<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-01-22 06:34:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566073" ref_strand="+" ref_description="SGN-U566073 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157355272|emb|CAO48648.1| (e_value=8e-116) unnamed; (*ATH) AT3G49250.1 (e_value=2e-96) | Symbol: None | expressed protein | chr3:18269246-18271983 REVERSE | Aliases: F2K15.110; ">
      <seq>ccttaacggcgatactctcactcttctcggaatctccggcgacccaacaatggacggcggccaacggagaatgtccatagacaatgagaagctgccaatcagtcctaaggcattaggtgtgcatgatccatcgctcaatcaaggaggccagattaattcccccatttttgctgccaatcgtgatccaatacaaaatggatctgctgaggcagtcatctgcaattccaagaaacttgaggatgcaatgcaggagtttggtcttaaaattaagcaccatgaagataatgtcaaatacttgaaggctgtgaagaacgagttggatgattcaattttggatatacgagttgctcttggcacgactaaatcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagctgccatctgtgtccagctgcaaaagcgtagtggaactcagattacacagattccatttatgaaggacataataggaattgttgctttgcttgggaaggtcgatgatgataatctcagcagatctctctcggattatcttgggctcgaaaccatgttaggagttgtttgcaagacgcgtgatggagttaaagcactggaaacatatgatagggaaggtcgtataaataaaagttctggttttcatggacttggagctccaattgggagacccttggatgacagatatctcgtaatctgtcttgaggacttaagaccatacactggtaaatttattgctgatgaccctcagaggaggcttgacataaagaagccaagatacctcaatgaggaaactcctcctggttttcttggttttgctgtcaatatgatcaatatcgacactgcgaacttatattgtgtcacaagcactggttatggcctgagagagaccctcttctatagactcttctcacgtttgcaagtatacaaaacaagggctgacatgctgcaggcactacctcttatagctgatggagccatatcgttggatggtgggatcataaagagtagtggtatatcctccctaggcgagagggaagtcaagatcaaatttccaatgagttctggaaggccgaatgtacctgaaaactattatgagactgagatccggttgaaggagctgcagtggaaaagggcaagatttgtggatgatttacagagagaacaaacattactggaccatgcaaagttcaactttgaaataaagaaacaagactttgtcaagtttcttgcacgaagctcatcctatgcttcagcgcctcagtttccagcaggaggggagcggtcaactccgatatcatgattgtgtgggaactttgagaccatttctatattagacagatggatgctttatcagttgatttgaagcttcagcttttattttatattctggataatgacctcttggataatatgtgcactttgggtcaatttcagcattaggtgcaggcttatgccagtctgattcaggtttaggtgaattttcatggatgagtggttgttcgcttaacgttaaggttgatctgtattgcaacttgcatcccccctcttattagctattgatatctagtatcagttgacaaattggctatgcttatgattgcgggtttgagatgaatatgaatgtagaaaattgaggattcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5512" stop="21046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5812" g_stop="5902" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="229" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="344" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="582" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12887" g_stop="13078" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="774" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13176" g_stop="13496" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="1095" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14287" g_stop="14509" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1096" r_stop="1318" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14510" i_stop="18299" i_length="3790">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.286" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18300" g_stop="18318" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1319" r_stop="1335" r_length="17" r_score="0.579"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18319" i_stop="20113" i_length="1795">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20114" g_stop="20126" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1336" r_stop="1348" r_length="13" r_score="0.385"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20127" i_stop="20312" i_length="186">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20313" g_stop="20534" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1349" r_stop="1564" r_length="216" r_score="0.833"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="20535" i_stop="20603" i_length="69">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="20604" g_stop="20746" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1565" r_stop="1707" r_length="143" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U566073" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>1715</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5812" e_stop="5902"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="13078"/>
          <exon e_start="13176" e_stop="13496"/>
          <exon e_start="14287" e_stop="14509"/>
          <exon e_start="18300" e_stop="18318"/>
          <exon e_start="20114" e_stop="20126"/>
          <exon e_start="20313" e_stop="20534"/>
          <exon e_start="20604" e_stop="20746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAGGTTTGATATTTTGATGATCTCTTCTTGCAAATGCTACTCATATTCTTTAGCACTTCTTTACTCTCTTTTCTTTTTCCTTTTTGAATTATTGTTTTAGACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAGGTAAAGAGGCTAGTCTTAAATAACGTCATTGTTTTATTCTCAACTTTTTCTTTCTTTCATAGTTCAACTTGTTTGTGAAGATACCCTAAAGAATTTATTGCCTATTAACTTGTTCCTTTTTGAGTATCAAGTAATATACTTGATCTCTAACTTTGCGCCTTAGTTGGAAATCTGATGTTATTTTGTGACCATGTTGCTTGACCTTTGTGGAGTGTAGTAGTTCGACCTTTCACTAACTTCCTCTTTCAATCTGCATAGAATAGTGTATGAAATCATGTTCTTCTCTTTCTATGTTCATTTCAAATGATTAACAGACCATTGGCATCTTTAATGAATCATTATTCTTTTTTAAAAAGGGGTGGGGGGGGGGTGTCTACAACACATTTTAGAAGTTAATCAGGAAACATTATCTATAATATTATATTCTGGTGGAGGAGTTTTCAGGATTTATCACGTTCAGAGTCTAACACAACTTTAGATTTACCTAAATGATGTTTGTCAATTATTGATATCTTAATCTCACTGTCTCCTAGGTGTTGTTCTTAATCCTACTCCTATGTTCATATATCATATGTATTTGAGTTTGTATGTTTATATATTAGATGTATTTGAATTTGCAGCACAATTTATTTTTCTTGTTGATTGCTTCATTGAATCATTATCCTCTCTACCTTCCCAAGGTAAGGGTAAGGCTGCCCAGACCCCACTTGTGGGATTTCACTGGATGTGTTGTTTGTTTGTGTTGCATCACTGAACCATTTGGATTCTGTCTTTCTCATGTACATTTTAGGGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCGGTAATATTTTGTGTTTCTAGTTAGACTATGCATGCTAATCAATGATTTATTTGTAATAATTTGTGTTGTTGATGCCAAGCAGATTAAGTCATCTCTGGGTTGGTTTAGGTAGCTTGAGGATTTCTAACTTGATCCTCGTTGCCCTTACATCCTGCTTTAATTGATTGACGATGTCATTTGATACTGCAAGCTATGCTTAAATTTTATCATGCTAGCAGGGAACTCTGCATGGAAAGAGATGCTATTTTTTCCCCCTTTTTAGAACTTTAAAGCTTGTGCTTGCTTTTGTATGCCTGCTGCAGATGTTCTCTTTGAGCAGTCCAAAGATGTAGAGATATAAGTAAAGTGCCTTTTTTTTAGTTCAAGCCATTACCTTAGTTGTGGGCCTGAGGTGTGGGGGGTTTTTGCTTGAACCCGACCATGTTAATTAAATATCAAAAATATGAACCCAACAAGAAGGGGACATGGAACCTTGCCTCAAGTCTACAAGAAAAGATTGCACAACAATCTTCCTAGGATAGGAAGTAGCCTACAAACAATCATTTCCAAATATCCAAAAAGAACTTAAATTAACAAAGAAGTTACATTTTTCATTAACCATTGGTAATTTTTGCTACAACAATTTCGTGAGAAAAGGACGATAGTTTTTTTCTTGGATGCAGTAAAACTGTCCCTTTTCAATTGAAGATGTTCATATTCTAACCTCATTACAGGTGAGAGAGAACACATCTGCTTCTAGTCTGTGAATGTGAATAGCTCTTTCCGACAACTGACCAGTTCCTTCTTGTTTGGAGGTGCTAATAAATTTCCTATTTCCCCATCTACTGTTCCTGATAGTCTCTGAATAGGGAATGTCTTTGTTTGTCAATCTTGAATTGAATGTCGATGGTAGAGAGGCATTTATGAATCTGCCTATCTTGTTAGCAATTGTCTTCCACCCAACATTAAAAGTTAGTCAGGGATGACAAGTGCAAGAATTCGTGCACGGAGGTTTGGCATCTACATATTTGCTTCCTTGTATTTGGAGTCCTCTAGTAGCAATATATGAAATTTTGGACATTGTTAGGCAAGACAAATGATAAGCTTGGGAAGGATCTTTTGCAGAACATACTGTAAAAGAATGGTCTAATTTATGTGCACTTCTGCTTTAGTAATTTGTTACAAGAGGAGACGTGGATAAATAGAAAATTTAGTAGTTCTGGTATTAAACAGTCAATATGTTGCGATGTTTTTCCCAATTCCTGCATCAAATTTGTCTGTTCTAAGCTTTTAGGGTCGAAAAACTGTTTTCTGCATAATGTTTTGATCTCCTAGTAATAGTGGTAAGAATTCATGAGAGAAAATATTGAAGAAATGAGTGGAATATATGTCAATGGTACCAAATGAAGACTAAGTAGATCAAATGAAGACCAAGTATATTTTTATTTTTTTTGATAAAGTTTAAGTTGTATTCTTCAGCTTAAGGTATGCTGGCTACCTCCAAAAAGTAACAAGCTAAGACCATAATTACATAGATCCTAGGAAATCTACCAACTGTTCTACTACGTCTATACCCTCTTCTTTACACCCAAAAAACATGTTAATGCAATTTTCTTCTACTTTCTGCATAGTGTTAGTAATAGTCTCATGACACCTAAGGTTTCTTTCTCTCCAAATAGCCCACCAGACACAAGTAGGTACTATAGACCATTGGGTGTTGCCCCCCCCCCCCCCCTCCTGACCTCATCCAACAGCTCAAAAGATCAGCAGTATGTTCTGGCCATCACCTAGGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGGACGGTAACCCTACAGTGTAAGAATAAGTGGCTGTTAGTTTCTTCCTTCTCATGACAAAAGAAACATCTGGAAACAATCTTGAAGCCTCTTTTCTTGAGTTTTCCGGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAGCATTTCACCTTGGTTGGGTTGTTGCCCTTCCGTATTTGTTTCCATGGACCATGAACTCCTCCAGAGTGAGTCATGACCTCTCTCTTATACAGTGTACACACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCTGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCATTTAGATTTCTCCTGAAGGTGAGGTTCCATCCTTGAGGGGACCAAATTTCAGCAATTGTACAAAAAGAAACGAGATCGGGGAAGACTGAGTTTATTAGACACTCTTGTCCAATCCACTTGTCCTTCCAAAAAAATATTTTGTTATCCTCTCCCACCTTGACCACCAAATTCACCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACTTTTTACGTGCTATCTACTACATTAGACACCCACTCCCCAGTCTGCCCATACTTGTTGAGAATTGCTCCTCCATAATGCCTGATCTTCAACACGAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCTTCAGATTTTATATGCGACGACCCCCTGTTTTCTTGCTTACTAAGGTTGTCTGCCATTTAATTCAGTGTATTTTTTCCCCCCTTTGTTCCCCAACCATAGAAAATCACGCCTTAATTTATTCAACCTCTCTTCTACCTTTGCTGGTAAAGGGAAAAGTGACATAACATATGTAGGCAAAACATCCAGGACCGAATTGATCAGAGTGACTCTTCCTCCCAGAGATTAGATAGTTTGCCTTCCTATTAACCAACCTCTTCTCTGTCTTCTCAATGATTCCATCCCAAATCTCCAGCTCCTTGTGATTATTCCCCACAGGCATTCTGCATTCCCAGGTAAGTAGTTGGTAAGTGCTCTATCTTGCATTGCAAGATGCTTGCCAACATCTGAATATTTGCCACTTGACTTGGAAGATGCTGCTTTTCCCCCCAGTTCACAGCCAGTCCAGAGATGGCCTCAAAAATCACCAAAACAACTCTAATGTTACTAACTTGTTCTGTCTTTGCATCACAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATATGCAGATTGACCCCTGACTGATTACCAATGTTGAAACCCTTTATCCAGTCGTTCTGATTGACCACTCTAATCATACTGTTGAGACCCTCCTTAGCTAAAATAATTAGGAAAGGGAAGAGAGGATCTCCAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAAACCTATCCATTTAAGCCATTTGTCTCCAAACCTCTTCTGCCTTAGAATATTGAGTAGAAACTCCGAATTGACATGATCATATGCCTTTTCTATATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTTGAGTCTACCCACTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATAACGGCCATTTGGTGATTGTTCTCTAATTTGCTTATCACTTTCTTTAATCTCTCCGCCAACAGCTTACCATAGACCTTGTACACACCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCATAGCTCCTGTCTTCTTTGGGATTAGAGCCACATAGGTGGCGTTGAGACTCTTCCCTATTTTCATGGAATTGTCTCACTGCATTCATGAAGTCTGTCTTCAGTATCTCCCAAAAGTTTTGGAAAAAACTCATCGGAGAGCCATCTGGTCTGGGGGCCTTATCACTAGAACATGATTTTATGCGATTGAAAACTTCATCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGTTTTCCGCTCCCTGTACATTAAATTCTGGCCTCCATTGTTCCGTTTTTATGTAAAGATTTTGATAGTAATTGATTATGGTTCCTTTAATTTCTTCTGAATCTGTTAATGTAACCCCTTCACCATCAGCTTGTCAATGGTGTTGAATCTTTTGTGTGCTGTAGCATCCAGTGAAAATACTTGGTATTTTTGTCTATGCAATTTAGGAAGATCTGGATAACAGGTCCCTGGTGTATTACCTGGACTGTTTGTAAAGAAGAAATTGGAGTTGTTCAAATGACGAACATAGCGATACTACATAGTATAAACTGTACATGTTTGTGAAACTAGCTTTTTACCATAGAATGCAAATGCCGAATATGTAGAATCTATTGAGGAATCCCATCCGCACTTGATTGGAAAAATAAGTACAGTCGGTCTTGTTTTGATTCGGGAAAAAATCTTTTTAAAAGGCATCTTAGCCTAAGAGGACTGAGAACTATAAGGCAAGCACAAACTGCTCCCACATACACTCATGATAAGGGAGGGTGGGGACAACCAGGCCACCACTTTTACCCTTAAGAGGCTAACAGGAAGTAAGCTTCACCCAGAATGTTACTCAGAATTCCTATCAAGGCCTTACCCTACTATTTATTTCCTAAATTCCTTTCACCTCAACTAGCTAACTCAAAACAAATTGAGTGTAGCCATGGATTCTTTTCTAGGACTTCAAGATATCTAGAGAGTAGAAGAGGAGAAGCTCCAATCAGAGTTCTGAGATCATTGCAAATATGATGCAACAAACTTGGAACCACACTCTCGGTGTGGAAGATAGGAATGAGCCTCTTGTCCTTAAATGAAAGGGAACTAACTGCGTGGGTCGCCCCCATAGCTTTGTATTCCTATAGGAAGTAGAATAGAAGAGTCTATCAACTATTTGTTGTTTTAGAAGGCTTAAATAAATGTGGATGCAAAGTAGTGTGTTTTGATTTGGGGTGTTCTTTGTCTTCTTTTAGTGGAGATCTATTACGATGCCTACTGAAGATAGACTCCTATCTATGCTCAATGTTATCAAAAGCAAAAAGCGCAAAAAAGTTCTAGGTTCCATTCGGGCTTAAGCTCAAAGTGCAAATAGAGCATGGATTTTAATGCAAAATGCTGCAAAGAGAGAAAAAAATACAATTATATATATGCTCAATTCAAGACTAATAATTATAAGTATGAATGACAATAAAAAAAACAAAGAAATTGAAAAAAAAATACGATAAAGTGAATATCAGTTGTTTAGTGTCACCTTTTCATAAGAGGTTCATTGACAAGGAAAAGTATGCCTTAGAATCTTGATGATGAAACTAAAGGTCAAACGCTCAACACGTATTGGGTCTCACTTCAGGGCTTAAGCGCTCTATGCCAACTATTTTGTTTGGCTTTATTAATTATGTTTGCGTGTATGGCAAAAACCCTGTTTGAAAATGTTGACTACTTATGCTATTATAATACTGATAAAGGCTTATTTGTATAAATGTGCTGAAAATTTTATTCTTTCCTTTTTTTTTTCTTTCTATAGTGGAGATAGTCGCACAAAATGACAGACATATTATTAAAGGACTTTACCTTTGCTTCCTTATCCTTGATAGCTAGATGTGAACCTTCACGAGTAGAGAAAAAGCACTTGGTCTATCTTGCACCCCTCATGCAAGACAAATGTATAATATGATATTGACTCTGATGGACCTAGTAGATTCCATATTGTTGTAAGCTTTTTGGCATAAAATGCAAGATGATTTTAACTCTATATAGAATCCATTACAGAGATGCAAGGGAGGTAGTCAATAGTCTTACCTACATATTTCTCCTTCACTGCTATTCTTTATAATAAGGTTATCCGTCCTTATAAAATGAAGAAGAGGATATCAGTTTACACTTTTGTTTTGACAGGATGTATTATTTACCAGTTGTACCTTATGAAGTTTTGCTCTCAATGTATGACCTATTGTCTCCGTGTGTGCAGCCTCAGTTTCCAGCAGGAGGGGAGCGGTCAACTCCGATATCATGATTGTGTGGGAACTTTGAGACCATTTATCAGTTGATTTGAAGCTTCAGCTTTTATTTTATATTCTGGATAATGACCTCTTGGATAATATGTGCAGTTTGGGTTAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATAGATGAGTGGTTGTTCGTTCATTCAGAACAGGTATACAGAAAATGTTCTATCAATTTACAGCATCGTACTAGTTACTGAACTTTCGCTTAACGTTAAGGTTGATCTGTATTGCAACTTGCATCCCCCCTCTTATTAGCTATTGATATCTAGTATCAGTTGACAAACTGGCTATGCTTATGATTGCGGGTTTGAGATGAATATGAATGTAGAAAAGTTAGGATTCATAT</genome_strand>
        <mrna_strand>CCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCATTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTGCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTCCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAG.................................................................................................ACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-T-CAGTTTCCAGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGAGCGGTCA..........................................................................................................................................................................................ACTCCG-AT--ATCATGA-TTGTGTGG-GAACTTTGAGACCATTTCTATATTAGACAGATG-GATGCTTTATCAGTTGATTTGAAGCTTCAGCTTTTATTTTATATTCTGGATAATGACCTCTTGGATAATATGTGCACTTTGGGTCAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATGGATGAGTGGTTGTTC.....................................................................GCTTAACGTTAAGGTTGATCTGTATTGCAACTTGCATCCCCCCTCTTATTAGCTATTGATATCTAGTATCAGTTGACAAATTGGCTATGCTTATGATTGCGGGTTTGAGATGAATATGAATGTAGAAAATTGAGGATTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589357" ref_strand="+" ref_description="SGN-U589357 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147789000|emb|CAN64660.1| (e_value=2e-78) hypothetical; (*ATH) AT4G00990.1 (e_value=1e-62) | Symbol: None | transcription factor jumonji (jmjC) domain-containing protein, contains Pfam domain, PF02373: jmjC domain | chr4:426944-431821 FORWARD | Aliases: F3I3.10; ">
      <seq>gagcaaaggtttgagctagaggttgaagcaaacattcgtggtgttcagctgacagaagaagacgtcatcatatcagccgttgatgatgatgatagagtgtattgtgataattgcaacacatccattgtcaatttccatagaagctgcccaaatcctgattgctcttacgatatctgtgtcaattgttgtcgggaactcagagatggtgcccagcatggagctactgaagtcagctcatctctcagcaagtcggtggaagctagtcgtatcacagcattgaagggaaacaatgcgccagatggctggagaagtccagagaccctccttgctaatgattgtccaactcacatgtccttcgatgttgctgagtggagagccaaatctgatggcagcataccctgtcctcctaaagagtgtggtggttgtggttcttctttaatggctctaaggcgtatcttcgaagcaaattgggtagaccaactaattcaaagtgctgaggccttaacatgcaactaccgccttccagatatagatttgtcgcatgggtgttcattttgtcttgctaccacttctgtccaagacggtgataaccgatgtcaagtaagagaagcatcttttaggaacaacagccatgataatcttctgtactgtcctaatgctgttcatgttgatggcaacgagtttgagcattttcaaatgcattggagggctggtgaacctgtaatagtttaaaatgcacaagctaaggcctctggtcttaactgggaaccaatggtaatgtggagggccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45957" stop="47981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46257" g_stop="46296" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46297" i_stop="46387" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46388" g_stop="46451" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="104" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46452" i_stop="46993" i_length="542">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46994" g_stop="47681" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="792" r_length="688" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U589357" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46257" e_stop="46296"/>
          <exon e_start="46388" e_stop="46451"/>
          <exon e_start="46994" e_stop="47681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAGGTTTGAGCTAGAGGTTGAAGCAAACATTCGTGGTACTATTTTAATTCATTCGGATAATTTCAACTAGCTTGTTGGTGGTGGCTCAGAATGTTCAGTGCTGTTTCTGGTCTCTTTTGTTTTCAGGTGTTCAGCTGACAGAAGAAGACGTCATCATATCAGCCGTTGATGATGATGATAGAGTGTATTGGTATGGTCTCCAATATAATGATTTTTTGTTGCGCTATCTATGCACATACACCATGTATAATGTTTTATGAGTTATTATTCATCCATAGTGACATTAGACGTAAGTTGTTTCTTCATGGAGTAAACAGTGGGATTGATTGTTCAAATATCTTTCTGTTGAAGTCAATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAAGTTTCCAGAAGTTCTTTTATTAGTTTGAAATGTAGTTTCTGTTGAACATATTCTTTGTCTTTATTTGTTTATTCTGGAAGAAAGGATGTAAGCTTACACAGAATGTTTACTATTTCCAGAGCTCAGTTTTGTCATGACACAATAGCTGTAATGATGCATGGTTCCTTATTTGGCAGTGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGATTGCTCTTACGATATCTGTGTCAATTGTTGTCGGGAACTCAGAGATGGTGCCCAGCATGGAGCTACTGAAGTCAGCTCATCTCTCAGCAAGTCGGTGGAAGCTAGTCGTATCACAGCATTGAAGGGAAACAATGCGCCAGATGGCTGGAGAAGTCCAGAGACCCTCCTTGCTAATGATTGTCCAACTCACATGTCCTTCGATGTTGCTGAGTGGAGAGCCAAATCTGATGGCAGCATACCCTGTCCTCCTAAAGAGTGTGGTGGTTGTGGTTCTTCTTTAATGGCTCTAAGGCGTATCTTCGAAGCAAATTGGGTAGACCAACTAATTCAAAGTGCTGAGGCCTTAACATGCAACTACCGCCTTCCAGATATAGATTTGTCGCATGGGTGTTCATTTTGTCTTGCTACCACTTCTGTCCAAGACGGTGATAACCGATGTCAAGTAAGAGAAGCATCTTTTAGGAACAACAGCCATGATAATCTTCTGTACTGTCCTAATGCTGTTCATGTTGATGGCAACGAGTTTGAGCATTTTCAAATGCATTGGAGGGCTGGTGAACCTGTAATAGTTAGAAATGCACAAGCTAAGGCCTCTGGTCTTAGCTGGGAGCCAATGGTAATGTGGAGGGCCTTC</genome_strand>
        <mrna_strand>GAGCAAAGGTTTGAGCTAGAGGTTGAAGCAAACATTCGTG...........................................................................................GTGTTCAGCTGACAGAAGAAGACGTCATCATATCAGCCGTTGATGATGATGATAGAGTGTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGATTGCTCTTACGATATCTGTGTCAATTGTTGTCGGGAACTCAGAGATGGTGCCCAGCATGGAGCTACTGAAGTCAGCTCATCTCTCAGCAAGTCGGTGGAAGCTAGTCGTATCACAGCATTGAAGGGAAACAATGCGCCAGATGGCTGGAGAAGTCCAGAGACCCTCCTTGCTAATGATTGTCCAACTCACATGTCCTTCGATGTTGCTGAGTGGAGAGCCAAATCTGATGGCAGCATACCCTGTCCTCCTAAAGAGTGTGGTGGTTGTGGTTCTTCTTTAATGGCTCTAAGGCGTATCTTCGAAGCAAATTGGGTAGACCAACTAATTCAAAGTGCTGAGGCCTTAACATGCAACTACCGCCTTCCAGATATAGATTTGTCGCATGGGTGTTCATTTTGTCTTGCTACCACTTCTGTCCAAGACGGTGATAACCGATGTCAAGTAAGAGAAGCATCTTTTAGGAACAACAGCCATGATAATCTTCTGTACTGTCCTAATGCTGTTCATGTTGATGGCAACGAGTTTGAGCATTTTCAAATGCATTGGAGGGCTGGTGAACCTGTAATAGTTTAAAATGCACAAGCTAAGGCCTCTGGTCTTAACTGGGAACCAATGGTAATGTGGAGGGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589355" ref_strand="+" ref_description="SGN-U589355 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gatggtctccaatataatgattttttgttgcgctatctatgcacatacaccatgtataatgttttatgagttattattcatccatagtgacattagacgtaagttgtttcttcatggagtaaacagtgggattgattgttcaaatatctttctgttgaagtcaattttgtttcttatctgctctttaactcagcagctattgcttacacgatctgtttcatgaagctgcattgttcattcctcctgataatgtattgccttctactttgacacccaaggatttctttgaccttttgatttgtgaacactaattttctatggttattacataaagaaaggtgtgtctgtggacgcggtagctcaaagtttccagaagttcttttattagtttgaaatgtagtttctgttgaacatattctttgtctttatttgattattctggaagaaaggatgtaagcttacacagaatgtttactatttccagagctcagatttgtcatgacacaatagctgtaatgatgcatggttccttatttggcagtgataattgcaacacatccattgtcaatttccatagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46154" stop="47334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46453" g_stop="47034" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U589355" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46453" e_stop="47034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTCTCCAATATAATGATTTTTTGTTGCGCTATCTATGCACATACACCATGTATAATGTTTTATGAGTTATTATTCATCCATAGTGACATTAGACGTAAGTTGTTTCTTCATGGAGTAAACAGTGGGATTGATTGTTCAAATATCTTTCTGTTGAAGTCAATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAAGTTTCCAGAAGTTCTTTTATTAGTTTGAAATGTAGTTTCTGTTGAACATATTCTTTGTCTTTATTTGTTTATTCTGGAAGAAAGGATGTAAGCTTACACAGAATGTTTACTATTTCCAGAGCTCAGTTTTGTCATGACACAATAGCTGTAATGATGCATGGTTCCTTATTTGGCAGTGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCT</genome_strand>
        <mrna_strand>GATGGTCTCCAATATAATGATTTTTTGTTGCGCTATCTATGCACATACACCATGTATAATGTTTTATGAGTTATTATTCATCCATAGTGACATTAGACGTAAGTTGTTTCTTCATGGAGTAAACAGTGGGATTGATTGTTCAAATATCTTTCTGTTGAAGTCAATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAAGTTTCCAGAAGTTCTTTTATTAGTTTGAAATGTAGTTTCTGTTGAACATATTCTTTGTCTTTATTTGATTATTCTGGAAGAAAGGATGTAAGCTTACACAGAATGTTTACTATTTCCAGAGCTCAGATTTGTCATGACACAATAGCTGTAATGATGCATGGTTCCTTATTTGGCAGTGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589356" ref_strand="+" ref_description="SGN-U589356 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>atcgtggttcttatctgctctttaactcaacagctattgcttacacgatctgtttcatgaagctgcattgtataatccacctgataaataatggcctcttactctgacacccaaagatttctttgaccttttgatttgtgaacactaattttctatggatattacataaagaaaggtgtgtctgtggacgcggtagctcaaaagttttttttctatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46316" stop="47121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46616" g_stop="46817" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U589356" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46616" e_stop="46817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAA</genome_strand>
        <mrna_strand>ATCGTGGTTCTTATCTGCTCTTTAACTCAACAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTATAATCCACCTGATAAATAATGGCCTCTTACTCTGACACCCAAAGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGATATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602904" ref_strand="+" ref_description="SGN-U602904 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|3492803|emb|CAA05489.1| (e_value=1e-57) ENBP1 [Medicago truncatula]; (*ATH) AT4G00990.1 (e_value=3e-52) | Symbol: None | transcription factor jumonji (jmjC) domain-containing protein, contains Pfam domain, PF02373: jmjC domain | chr4:426944-431821 FORWARD | Aliases: F3I3.10; (*SWP) sp|Q5HZN1|JD2AB_XENLA (e_value=3e-14) JmjC domain-containing histone demethylation protein 2A-B OS=Xenopus laevis GN=jmjd1a-B; ">
      <seq>gnaaaaagctagaaagaggagcatttctctgtcatgtccnttgattgnttggattggtgtcaggntcagataaatattcatcagttcttcaagggctacttggagggtcgcaggcatcacaatgggtggccagaaattttaaaactgaaggattggcctccggctaatacttttnaagaatgtttgccgaggcatggagctgactttttttgctatgcttccgtttagcgaatacactcatcctagaaaaggtcttctaaatttggccactaagctccccgatactgccttgaagccagacttgggacctaaaacttatattgcttatggatatcaagaagagcttgnaagaggtgattctgtcactaagttgcattgtgatatctctgatgcggtcaacatattgactcatacaaccnaagcaaaagttgatcacaatcaacgtgaaatcattgaaaaactaaggaagcaacaagaggttgaagattcaaaggaacattgtccagncatagctgaggctccggattcncatcaaagatctgacnaaactgaaactataaaacttttattctcannnnncactggtgataacanaaagttgcttgccnnaaactatggacaaggggaaanatattgataaaggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47392" stop="50123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47692" g_stop="47753" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47754" i_stop="48469" i_length="716">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48470" g_stop="48799" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="394" r_length="331" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48800" i_stop="49570" i_length="771">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49571" g_stop="49824" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="649" r_length="255" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U602904" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47692" e_stop="47753"/>
          <exon e_start="48470" e_stop="48799"/>
          <exon e_start="49571" e_stop="49824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAGCT-GAAAGAGGAGCATTTCTCTGTCATGTCCATTGATTGCTTGGATTGGTGTCAGGTATGCATTTTATTTGTGTAAATTATTCCTTGCGGAAAAAAGAGATAGAATCACAGCATACCTGTTCTCAAGTTATCATATGCTTCCTAAATTTTGGTCCTAAAGCTACTATATATATATAACATGAGTTGCTTATTTATTTTCTCTAATTTTTATTCTCGTCAAATTTCATTGCATTGTTCACGATGGCTTGCAGTTGACCTTTTTTTTTCATCTAAAATGAATTTGAATCTGGGAAATTATCTCTTGCGTAATTTTACTCCCAACATCTCCTAGCTGGTCTCTTGTGTATTTTACCCTACCTGACCAAATTGCAGTTTTCCATTACCTGATTAGAATTACAAAAAATTATCCAAAAAAATATAAAAAAAAAGAAGTCTAGAATTGGCAATTACCTTTCCTGGTAGGTTGGTGCTAAACTGCTAATTTGCTATATTGGTTTGTCTTTGTTATTTGCTCCTTACTATGATATCATGATTGGCTGGTTTAGCTTACCATGAATCCTGGTGTTATTGCTGTGCTGTTATTATTTTAATTACTATCATTATTATTATCATTATCATTATCATTATCATTATCATTATTATTATTATTATTATTATTATTTTTTTTTTTTTTTTTTTTATTATTATTACTACTGTTATTATTATTATTATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTATTTTATGATGCAGGTTCAGATAAATATTCATCAGTTCTTCAAGGGCTACTTGGAGGGTCGCAGGCATCACAATGGGTGGCCAGAAATTTTAAAACTGAAGGATTGGCCTCCGGCTAATACTTTTGAAGAATGTTTGCCGAGGCATGGAGCTGAC-TTTTTTGCTATGCTTCCGTTTAGCGAATACACTCATCCTAGAAAAGGTCTTCTAAATTTGGCCACTAAGCTCCCCGATACTGCCTTGAAGCCAGACTTGGGACCTAAAACTTATATTGCTTATGGATATCAAGAAGAGCTTGGAAGAGGTGATTCTGTCACTAAGTTGCATTGTGATATCTCTGATGCGGTATGCTCATTCCAACAACTGTTCGATTAATCTTATTCCAGGTTCCTGTTTGGCTGATTTCATTTTGCTTTTCATGGGGATTGCATCCCTTCCCAAATTCTATACTGACATCTAATACAATCTTCTCCTTGAGATCAGAAACTGCATGTGCTTCAATAGGCAAGTGTAAGATTGGAGTTCTACTTTTTATTGTTTTGGTATAAATCACAGGACTTTGATATGTCTTAAATGATACTGATAATAATATGAATACCATACCTAAATGAATAGTTGCATTATGGAAGCAAATCTTATTGTTCAATTAATTAATAAAAATCTTAAATTTTTTATGATTTTTCAATCCTTGGAACGGGAAGACCTAAATCTATATTAATTTTTATTTTTTGAGAAGTAATATGCTTGCTGGTTAGGGCAGAATTTTCCTCTGAGAAAGAAAATTTTGAGGAGTTGGCAAGGGCAGAATTCCAAGGAAAGAATTGATGAATTCGAAGGAGCTGGTCAGCTCGTAATAATACATTACTTATTTCCTCTCAATGCTACTTTATCTAATCAACCTTTTGATCAATTCAAGTTTTATGTATATTCTTTTTCTTTTTTGGATTTGTAAAATTATTGTTACTAAAAAGCAGCAATCTGCTGCAAAATATTAACATACGAAAAGCCTCAGTACAGGTTGTGTAATGAGCTCAAGAAGTCTATCATGGCCTCTGTGTGATTTTCAATTAACATGTTACAACAATAAAACAACTTGGTTTTGTGTGTGTTCTTCAGGTCAACATATTGACTCATACAACCAAAGCAAAAGTTGATCACAATCAACGTGAAATCATTGAAAAACTAAGGAAGCAACAAGAGGTTGAAGATTCAAAGGAACATTGTCCAGGCATAGCTGAGGCTCCGGATTCTCATCAAAGATCTGACGAAACTGAAACTAT-AAACTTTTATTCTCAGGAAAGCACTGGTGATAACA-AAAGTTGCTTGCCAGAAACTATGGACAAGGGGAAAGATATTGATAAAGGAGAAAA</genome_strand>
        <mrna_strand>GNAAAAAGCTAGAAAGAGGAGCATTTCTCTGTCATGTCCNTTGATTGNTTGGATTGGTGTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GNTCAGATAAATATTCATCAGTTCTTCAAGGGCTACTTGGAGGGTCGCAGGCATCACAATGGGTGGCCAGAAATTTTAAAACTGAAGGATTGGCCTCCGGCTAATACTTTTRAAGAATGTTTGCCGAGGCATGGAGCTGACTTTTTTTGCTATGCTTCCGTTTAGCGAATACACTCATCCTAGAAAAGGTCTTCTAAATTTGGCCACTAAGCTCCCCGATACTGCCTTGAAGCCAGACTTGGGACCTAAAACTTATATTGCTTATGGATATCAAGAAGAGCTTGNAAGAGGTGATTCTGTCACTAAGTTGCATTGTGATATCTCTGATGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACATATTGACTCATACAACCNAAGCAAAAGTTGATCACAATCAACGTGAAATCATTGAAAAACTAAGGAAGCAACAAGAGGTTGAAGATTCAAAGGAACATTGTCCAGNCATAGCTGAGGCTCCGGATTCNCATCAAAGATCTGACNAAACTGAAACTATAAAACTTTTATTCTCA-NNNNNCACTGGTGATAACANAAAGTTGCTTGCCNNAAACTATGGACAAGGGGAAANATATTGATAAAGGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572879" ref_strand="+" ref_description="SGN-U572879 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|157355278|emb|CAO48654.1| (e_value=5e-16) unnamed; (*ATH) AT5G53350.1 (e_value=2e-12) | Symbol: None | ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX), identical to CLP protease regulatory subunit CLPX GI:2674203 from (Arabidopsis thaliana) | chr5:21661124-21664933 FORWARD | Aliases: K19E1.15, K19E1_15; ">
      <seq>gtaggaatgacaagaaatcaagaaaccaaagagagacagtacgacatcgttacttgattcctgtagattttttttcccaaacacttcatgtagatattcctgaaagtaactatcatttcattgcttgctgcttatcactcttttggatattaaaatttaattcttctgtgttgctctagaaaatcctcattactcctccactaccaaaatcctctctgtaaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaaacctgtatcgtttcgtggtgaatttgttgaccgatgttatgataatttgaagaattcaagtaggaagagtaaggagaaaattaatatgtctagtaactatggggaacctcctgagatttggcaaccacctggtgaggggattgtggttcgtcctggtgtgaaatttgttcaggtgggtgaaggggaaggtcctggttcgggttcgggttctggaggtgggtttggttccgggtcaaaagatgggtcttggggtggatccaatttgggtacccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54446" stop="55957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54746" g_stop="55657" g_length="912"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="912" r_length="912" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U572879" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54746" e_stop="55657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGAATGACAAGAAATCAAGAAACCAAAGAGAGACAGTACGACATCGTTACTTGATTCCTGTAGATTTTTTTTCCCAAACACTTCATGTAGATATTCCTGAAAGTAACTATCATTTCATTGCTTGCTGCTTATCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTT</genome_strand>
        <mrna_strand>GTAGGAATGACAAGAAATCAAGAAACCAAAGAGAGACAGTACGACATCGTTACTTGATTCCTGTAGATTTTTTTTCCCAAACACTTCATGTAGATATTCCTGAAAGTAACTATCATTTCATTGCTTGCTGCTTATCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTGTAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGGTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595791" ref_strand="+" ref_description="SGN-U595791 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tttggatattaaaatttaatttttctgtgttgttctagaaaatcctcattgctcctccactaccaaaatactgtctgccaacaagaatccctcaatttttcagttttctttgtctgatgggtcatctcccaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttagaagatttcattacataatcatctgtatcttgttcagacatataaaaagaaagaatctttactttgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgacatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtaatcgaaccaactgggataatttggtctcaaattctggtcatagttcttctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54587" stop="55677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54887" g_stop="55377" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U595791" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54887" e_stop="55377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCC---T------TTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATT</genome_strand>
        <mrna_strand>TTTGGATATTAAAATTTAATTTTTCTGTGTTGTTCTAGAAAATCCTCATTGCTCCTCCACTACCAAAATACTGTCTGCCAACAAGAA-TCCCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCCCAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTAGAAGATTTCATTACATAATCATCTGTATCTTGTTCAGACATATAAAAAGAAAGAATCTTTACTTTGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGACATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAATCGAACCAACTGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586324" ref_strand="+" ref_description="SGN-U586324 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|18423503|ref|NP_568792.1| (e_value=9e-157) ATP-dependent Clp protease ATP-binding subunit ClpX1 [Arabidopsis thaliana]; (*ATH) AT5G53350.1 (e_value=6e-159) | Symbol: None | ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX), identical to CLP protease regulatory subunit CLPX GI:2674203 from (Arabidopsis thaliana) | chr5:21661124-21664933 FORWARD | Aliases: K19E1.15, K19E1_15; (*SWP) sp|A1U1Q2|CLPX_MARAV (e_value=7e-93) ATP-dependent Clp protease ATP-binding subunit clpX OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=clpX; ">
      <seq>ggtaccaaggcctgcaggaaatgacagtagtgaaaaaacagatggagtagaaaatgaatctgtggagcttgagaagagtaacatccttttaatgggaccaacaggttcaggacagggaaaactttacttgccaagaccttagctcgattggtgaatgttccctttgtaatagcagatgctacgacactaactcaggcaggatatgttggggaagatgtggaatctattctatataagctcctcactgttgctgactacaatgtagcagctgctcagcaaggcatagtgtatattgatgaagttgacaaaatcacgaaaaaggctgaaagcctcaacatcagtagagatgtctcaggagagggcgtccagcaggcattgctgaagatgcttgaaggaacaattgtcaatgtgccggagaagggagctcggaagcaccctagaggggataatattcagattgataccaaagatattctctttatatgtggtggagccttcattgacttggagaaaacaatctcagaaaggcgccaagattcttctataggatttggcgcaccagttcgcacaaacatgaggactggtggtgttacaagtgctgctgtgacgtcatctttattggagacagttgaaagtagtgatcttatatcatacggtctgatacctgagtttgtcggccgattccccattcttgttagtctgtcagctttaactgaggatcaacttgtgcaggttctaacggagccaaaaaatgcgctagggaagcagtacaaaaagatgttccagatgaacggggtaaagttgcattttgttgaagctgcactaagattggtagctaggaaagcaatatctaaaaatactggtgctcgtggattgcgatccatattggagaatatattgatggatgctatgtatgagattcctgatgtcagaacaggcgatgatgtaatagatgccgttgtagttgatgaggagtctgtaggaactgaggggcgaggatgcgggggtaaaatcctttatggcaaaggtgcatttgaccgacacttcccacagaatagatcaaaggattctgaggcaaacatggaggcgtccgatggagaccatgaggcagaacaggaacttccttccattgttgctttgtaaatgttctgtgaggtgtatttctggtctcacttgtgtacagtaatctaaaattcaaataaacaatgttatttaaatagagctcaatgtactttcatactgcattttgttgtgtttttactgttatctggatatttattctttgatcttcactagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55858" stop="63569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56158" g_stop="56267" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56268" i_stop="56800" i_length="533">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56801" g_stop="56885" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="195" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58269" g_stop="58319" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="246" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58506" g_stop="58580" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="321" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58685" g_stop="58762" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="399" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59610" g_stop="59666" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="456" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60156" g_stop="60226" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="527" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60313" g_stop="60412" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="627" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61062" g_stop="61166" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="732" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="61386" g_stop="61448" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="795" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166">
            <donor d_prob="0.254" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="61615" g_stop="61737" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="918" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="62798" g_stop="62953" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="919" r_stop="1074" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="63046" g_stop="63269" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1075" r_stop="1298" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U586324" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56158" e_stop="56267"/>
          <exon e_start="56801" e_stop="56885"/>
          <exon e_start="58269" e_stop="58319"/>
          <exon e_start="58506" e_stop="58580"/>
          <exon e_start="58685" e_stop="58762"/>
          <exon e_start="59610" e_stop="59666"/>
          <exon e_start="60156" e_stop="60226"/>
          <exon e_start="60313" e_stop="60412"/>
          <exon e_start="61062" e_stop="61166"/>
          <exon e_start="61386" e_stop="61448"/>
          <exon e_start="61615" e_stop="61737"/>
          <exon e_start="62798" e_stop="62953"/>
          <exon e_start="63046" e_stop="63269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAGGTAATCTTTATAATTGTCCATTGCGCTTCTTGAGGTCTCAAAATGTTGGAAAGAAACATTTCAGATAAACACGCCCTTGAAGTATGGAACTTAAGATTCACCAGCAGAGAAATCTGTTTTCCCCTTTCTCCTGCTTTCTTTTTGTTTTTAATTATAAAATTTTTCTGAAGATACTGCGTGGTGCTATTTACTTATAGTGGTGATATGATGGTCTCAAGCTAATGCTCATTCTCTGATTCATAATATAACTATACATGTGCGCTGATATGAGATAACTTTGACTATGTATATTAAAGCTTAGACTGTGATGATGAGGGTGACATGATTTTTGCTTTTTGACTATGATTTAGTAATTTTAATGCATCGCTCTCGTTTATCTATCCCATAAAGTTATCCTGGCTCCCTGCTTTTGTCATTGGAGGGGGTAGGGGTGAATGAGTAGAGCTCTAACATTATTGTTATCATCGTTGATAGCGTGATCCTTATTTTAATAAAAAATACTTTTTCACTTGAGTATTTTGTGTCATATCAAGGACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGTATGTTGTTATCCTGTCACCTTGGTAGAGATAGGAAACAACTCTCAGCTTAAAAATCTATAAATAGGATTAATATTTTTCTAAATCTTGTTCTCTTAAATGTAAATTATGTCAACACTGTCCTTAAAGTTCAAATTTCTTATTTCAATACATAATTTCCCCCCTTGTATATTTGTTACTCCTGCAAATATATTGTGTGTGTTAAATTGTTTGAAACTTTCTTGAGCCGGCAGTCTATCGGAAACAACCTAGTTACCGCACAAAGGTAGGGGTAAGGTCTGTGAATTCCCCACCCTCCCCAGACCACACTTGTAATATACTAGGTATGTTGTTTATTAATTATTTGCAAGATCCCATAAGCCTTGGGAACCGTTTGCAGATGGTCTGTTTGAGGCCAGAGTTAGTCCGTGTAAGGTGAGAAATCTGAATTAGCTCTTTTGGAGCTACAACTGAGCTGATTTTGCTTTTGATTCAGTGAAAACGTATAATGGAGGAGACCCGTCTTCATCTATTGAAGGCGAGAGTGTTTTGAGGATTAGTGTTGGTATTGAAGACCGTGTAGTACATTGGTGCACGTGAGGAACTTTTGTGGGGACAAAATCATGTTAATGCCTTAGAAGCTAATATGAAAAAGATGAGAAAAGAAGTTGAAAGTAGTGAGGTTGTAAGAAGATGGAGAATAAAGAATAGCTGCTCTCACAATGATTAGGCAAACCCATGTTTCACAGTTCAACTTCTTGGAACTGTGAATTTCATGAGTCTACTTTTTCAGAGGGTTATTACTATGAACCTGAAGACAAAAATAGATAGGCTGTTCTTCATTTTGACATTCCAAGACTATTGACACCTAAGTATGTGTATAGATCAATGACACTTGGTATCCGAACTTTAGGCCATCATTAAAAGAGATGCCACTGTTAATCTAAGTCTACCTTGAGATTAAATAACTAGAATTTCCTGGTGGTTAGGTTAATTTAGTCTGAACATGTTTACTATTCCCTGCCTACCCTGTTTCCAGTGCTTAATCGCTGAAGTCTTTCATAGAAGTAGAGTAGCAGAAAACAAGTGATGTTATCATTAAACATAGGGATATTTCTTTTGGGTGATCTAGTTTACAAAATAGCCAACAAATGTTTAGGTTTTGTATATCCAAGTATAATATGCATATACTTTACCATAAGATACATACCTATACATAATTAGTGTACAGGTTTTGTATATTTCAGCCTTATTGGTAAGTAAGTTTTGGATGAACTGTATATATTGGTAAATTCTCCATTAAAAATAGTTGTCACCTTGATAAGAGTCCTGAAACTGTGGGTTTCCATTCAATGGTATACTCGTTCCAAAAAAGCCAGTCAATGATAATACTTTTGTCTGCAGGCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTAAGTACTAAACCTGTTGAGTCTTTTTATCTATAATTTATTGTTCTATTCATGTTTTATTTTCTTTGTCTTGAGAAAAATGTTCTTGCTTCTTAATCAGAATGCATGATTTTGTGCATCCTTTCCAGTGATTTCTAGCCTTGATATGACTTCTCATTTTATTACTCTGGTATGATATTATTGCAGGTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAGGTTGATATTGACTTATTGATTGTTATTTTCTTTTTCAGATTTAACTTCACTAGCGACTTCTCATGTGTCAGTTTAGCTGATTCCTCCTATACTGATATTTCCAGGCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACAGTAAGTGTATAGCTTAGTTTTTTGCATGTTAATGGTGAATTGATCGCCTCAATCTTTACCACGTGTGGATATTGTTTAATGTTGCAAATGTAGAAGCAACTTTGGCTGCTGATGGCTCATCAACATTAGATCTAGACAAATAGCTTTTGTATATGATGATAACCAGATTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTGAAAGTTGGAGGCTTAGTGTCGGACACTTTATCTAACCAAACTATATAAGCTGATTTTTTTTAGATCCCATGGACTGGCTGAATGTAGCTCATCTTCTATGATATAACTTTTATCTTGCTGGTGTCCTTGGTACTTGTTTCATGTCTTTTTCAGTTTCCTGTAACACAATCTGCATGTGCTAACCGTGAGTCCTTTTGCCCTTTCTGCTAGTTTATTCCAGAAGTAGTAGTGGTGGTTTTCTCTTGTAATATTCTTTCCTCTTTCTTCTTTATTTTGAAGATATTTATTGGAATTACTTGAATCTTTCGATAAAGAAGGAATGGTTTCTTCTTCTTTTTTCTCCTTTCGATTTTCACATTTCTATTATTATATATCTATCCTTATTCAAATGACCTCCAGATGTACAAAACAATTGTTGTGATCAAAGAATGGTCTGACTATTTTAACGACTAGATTTGCGATTGCGGATCATGGTTTGATTTATAGTTCAGTCGTAATGATTGGAATAATTAATGTTTACATCATTTGTTTTTATAATTAGGTTTCTGTTACTTATCCCAAAATTAATAATAACAATCAGCTTTCTGTTGCAGATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAGGTAGGTTATGAAAACTTCTCATTTTGGGATTAAGATATTTATTCGCAATCAAGAAGAATTTGGAGTGTCCTGGGATTAAAAATGTTTATTTTTGGCTTTGTACTGTTAATTGTTTATATGGATGTCTTCAAATGGATAAAGATTTGTATCCAATAAGATAATTTGATGTGCTCATGAGCTTGAGTTTAGGATGAATTAATTTACCTTCGTAATTATTTACTGATTTTATAACTGAGGTATAGTGACTGTTTCATTTGGCCTTCTGTTAGTGGGTGTATGATAGCTGTTCTTGAAGAACTAGTAAAGTGATCTTTGACTAGTTCTTTTGTCTAAGATTATCTTCATAGTTATTTGTTAACTCTTTGCGCTTTTATATCGTTGGATGACCCTGATTCTTTTGGCATGCTAGGTTTACAGTTGATTTGATGTTTCAGATATATTTCTTTGAGCAAAAAGTTTCTTATATCATAATTGTTTATGTCATTACAGATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAGGTCTTGCTACTTCCACGTCGTAGTTTTATCTCTTTCCTTTAGTCTGATATTCACCTTATTCCTGATATACTTGTTCTTGTTTTCAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTAAGTTTCTTCTGAACCCTTGCAGCTTAGCGAACCTTCCAGACCACATATACTAATAGTTTTTTAGCTTGATTGTGGTTGTATTTTGCATGATCATATATGTAGCCTCCATGTTAGCTGCATAGAGAAACTGATGTCTATGTGTTGCTGTGCTTATTGGTCAATGAAAGTAGTTACATGTGCATCAGATGAAGTCAAATATATGCTACAAGATGAACTGAGATATTAATTTACTGATGTGAAACTTGTTATTACTGTTTGCTATCATTATTCTTCTGCATCTCCAACACGTTTTTCCTAGAATTCGGGTTTTTCCCTGCATTTGTAGTTTGAGCAGATGCAGAGTTGTATTTGCTTTGACCAATTAAAAAAGAGTTGTATGTACTGTTTCATTTACTTCCTCTGGCTTGTTTTATGTCAGTTAAATAAAGTGATATTTGACTGAGATCTTTAAATTTATTATTTTTCCACTTTAATATGGAAAAAGTTCAGGCCCATATAGTACTTCATGTAATTTCTAAATATTTTAGTTTTATTTTTTGAACTATGGATAATTCCTGTGACCAATATAACTCTTTATTCTTACTCTTTTTTATGGCATGTTTTGAAGCATTTACTAATCATTGTACATAATACTCCTGTTATGCAGGTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATACTTGGAGACTTCTTTCTCAGGTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAGGTATGTAGTATGCCTTTTTTTCCTCTTCTTTTCCTCTGTGGACCTACAGCGTCTAGTGAGGACTGTTCAGAATATACGTTCTGTAGTTGTTATGCTAACCTGGAAATGAACTAGTTAATTATGTGAAGCAAACTGCTTGACATTATGAAATTTAATTACACATTTGCTTAGTGTACTTCTCTTCCAAGTTGCGCGGACTCTTCACTTTCTGTGCCGCTACATAGGGTGTAGGATCCGTACCCGATGTGGTCAACCAATTTTATGTTACCCAAAGTTGATGGTGAAATTCGGTACAGATACAATGATTTCTGTAATCAAAGCACAAGCTAAGGTAAAATTGAAGAAAATGGAATACTCTATGTTTACAAAATTTCTCTGTCAGTCATTTTCCTTGTATCACCTTATGGGATTCTCCTCTTGATCTATATTTTGTTATTTTTTCTTCATAATACCTTGTAAGTTCCCACAATATGTCTCATAATTTATACATATAACTCGACTTTTAGATTTTGAATTATTATTAGCCAAATCTCTACACTCATATTCATACCCCCGAATCTTAAAATTTAGATCATGAAGGATTTGACCTCTAGATCCACACTTGTATCAGACACTCACACCTGAGTCCGAGCAACTTAGCTTTTCTTTGGTTGTGGATTATATTGCTGAACATAATGTTCAAAATAAAATTGATCAGACCATGGTGCTTATTTCAAATTCTGAACATCTATGATCGTGCTTAGAACATCCAGGTTGAGTTCTCTGTATGTTTATATCATTAAATATGTACCGAGTTAATGACAAATACTTGTTGTTTTTCACCAAGTATACTATGAAAGCGTTAGCTGATAATTCTTTTTTAACTAATAAACAGAAAACAACCAATCAAAATTTGGGAGGGGATCATCTAAACAAAACATAAAAATAAATAGCCTGGAGAGATACATTCTAAAGGAACTGTAGCCTGTTGCTGAACTCCCTCAAAACCGCTTGTCCTTTATTTTATTTCCTTTTGTCTCGTTCCTTCTGCTAGCGTATTCCTAATTTGTATGTCTTGCAGATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAGGTAAGTTTAACCTGGCATGATCTGGTATCTGATGTCGCGAATACAGTGTTAAATTATAGTATTATAACGTTTTTCATGTTGCACTACTACAGGCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTTGCTATTTATTCTTTGATCTGCACTAGCT</genome_strand>
        <mrna_strand>GGTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT..........................................................................................................................................................................................GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG........................................................................................................GCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG......................................................................................GCGCCAAGATTCTTCTATAGGATTTGGCGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG...........................................................................................................................................................................................................................GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG......................................................................................................................................................................GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG............................................................................................GCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTGGATATTTATTCTTTGATCTTCACTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597126" ref_strand="+" ref_description="SGN-U597126 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147791350|emb|CAN75136.1| (e_value=1e-38) hypothetical; (*ATH) AT5G53350.1 (e_value=5e-39) | Symbol: None | ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX), identical to CLP protease regulatory subunit CLPX GI:2674203 from (Arabidopsis thaliana) | chr5:21661124-21664933 FORWARD | Aliases: K19E1.15, K19E1_15; (*SWP) sp|Q2RU44|CLPX_RHORT (e_value=2e-17) ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=clpX; ">
      <seq>taggttataaaaacttctcattttgggattaagatattctctttatatgtggtggagccttcattgacttggagaaaacaatctcagaaaggcgccaagattcttctataggatttggcgcaccagttcgcacaaacatgaggactggtggtgttacaagtgctgctgtgacgtcatctttattggagacagttgaaagtagtgatcttatatcatatggtctgatacctgagtttgtcggccgattccccatccttgttagtctgtcagctttaactgaggatcaacttgtgcaggtaatgactaatgtttgccgtaacttggttctttggcactaattgccttgtgcacattattagggcttgtatggaaagctgggtcttcctttgcttgaataaggtggatttgtacatatgttctgccattgggtttaatcttccagtactttcatccagaatatgagattatagagcaaattttgatttttctcttctctctgtttcgcttctttgcaggttctaacggagccaaaaaatgcgctagggaagcagtacaaaaagatgttccagangaacgggggtgagtgtttgcctctcaaaatccttcttgggtatgcanaaagatgcatccgtttatctttttagaccctgtatcatatgggcaaggagcnngttggagcttttctgggttcctgttgatttgatcanaatgntacttctctcanac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59368" stop="61895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59668" g_stop="59700" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59701" i_stop="60168" i_length="468">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60169" g_stop="60226" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="91" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60313" g_stop="60412" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="191" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61062" g_stop="61595" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="726" r_length="535" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U597126" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59668" e_stop="59700"/>
          <exon e_start="60169" e_stop="60226"/>
          <exon e_start="60313" e_stop="60412"/>
          <exon e_start="61062" e_stop="61595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTTATGAAAACTTCTCATTTTGGGATTAAGATATTTATTCGCAATCAAGAAGAATTTGGAGTGTCCTGGGATTAAAAATGTTTATTTTTGGCTTTGTACTGTTAATTGTTTATATGGATGTCTTCAAATGGATAAAGATTTGTATCCAATAAGATAATTTGATGTGCTCATGAGCTTGAGTTTAGGATGAATTAATTTACCTTCGTAATTATTTACTGATTTTATAACTGAGGTATAGTGACTGTTTCATTTGGCCTTCTGTTAGTGGGTGTATGATAGCTGTTCTTGAAGAACTAGTAAAGTGATCTTTGACTAGTTCTTTTGTCTAAGATTATCTTCATAGTTATTTGTTAACTCTTTGCGCTTTTATATCGTTGGATGACCCTGATTCTTTTGGCATGCTAGGTTTACAGTTGATTTGATGTTTCAGATATATTTCTTTGAGCAAAAAGTTTCTTATATCATAATTGTTTATGTCATTACAGATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAGGTCTTGCTACTTCCACGTCGTAGTTTTATCTCTTTCCTTTAGTCTGATATTCACCTTATTCCTGATATACTTGTTCTTGTTTTCAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTAAGTTTCTTCTGAACCCTTGCAGCTTAGCGAACCTTCCAGACCACATATACTAATAGTTTTTTAGCTTGATTGTGGTTGTATTTTGCATGATCATATATGTAGCCTCCATGTTAGCTGCATAGAGAAACTGATGTCTATGTGTTGCTGTGCTTATTGGTCAATGAAAGTAGTTACATGTGCATCAGATGAAGTCAAATATATGCTACAAGATGAACTGAGATATTAATTTACTGATGTGAAACTTGTTATTACTGTTTGCTATCATTATTCTTCTGCATCTCCAACACGTTTTTCCTAGAATTCGGGTTTTTCCCTGCATTTGTAGTTTGAGCAGATGCAGAGTTGTATTTGCTTTGACCAATTAAAAAAGAGTTGTATGTACTGTTTCATTTACTTCCTCTGGCTTGTTTTATGTCAGTTAAATAAAGTGATATTTGACTGAGATCTTTAAATTTATTATTTTTCCACTTTAATATGGAAAAAGTTCAGGCCCATATAGTACTTCATGTAATTTCTAAATATTTTAGTTTTATTTTTTGAACTATGGATAATTCCTGTGACCAATATAACTCTTTATTCTTACTCTTTTTTATGGCATGTTTTGAAGCATTTACTAATCATTGTACATAATACTCCTGTTATGCAGGTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAAC-GGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATAC</genome_strand>
        <mrna_strand>TAGGTTATAAAAACTTCTCATTTTGGGATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG......................................................................................GCGCCAAGATTCTTCTATAGGATTTGGCGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTAGTGATCTTATATCATATGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATCCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATATGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGANGAACGGGGGTGAGTGTTTGCCTCTCAAAATCCTTCTTGGGTATGCANAAAGATGCATCCGTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCNNGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCANAATGNTACTTCTCTCANAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570954" ref_strand="+" ref_description="SGN-U570954 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|4584255|emb|CAB40577.1| (e_value=7e-115) SINA1p [Vitis vinifera]; (*ATH) AT3G61790.1 (e_value=4e-110) | Symbol: None | seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035; contains Pfam profile PF03145: Seven in absentia protein family | chr3:22882768-22884665 REVERSE | Aliases: F21F14.2; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=3e-109) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3; ">
      <seq>ggggatttgaaggtgatcctcatttctctcacagaaattcagagccaccggagaggaagaagaagaggggtgggtgggggggttttcagggagaaaaaaagtttgtttgatttggttctttcatcagaatccgttgccgatctctataatttcatttcttttgcttcttcttcttgttgttgttcttgccgttaatatatcaagaaatgtgaattttgtgatatgcgccatttgtgacttgaaatttattgggtggagagaaagattgaatctttttctctatttgataattgggtcaaagtgggttgctttcagattttgtaaaggagcaatggaaatggagaacattgagtgtgtttcaacaactgatgggattgaagatgaagagatccagttatcacataatcaattttcttctgcaaaacctcataatattctttttcccggacttgcccctactagtgtacatgaattgcttgaatgccccgtttgtaccaattctatgtatccaccaattcatcagtgtcacaatgggcacacactttgttctacctgcaaaacaagggtgcacaatcgatgtcctacatgtagacaagagcttggtgatataaggtgcttagctctggagaaggttgcagagtcacttgaactgccttgcaaatatttttccttgggatgcccagaaatattcccgtattacagtaagctcaagcatgaggcactgtgcaactttagaccatacaattgcccatatgctggatcagaatgttcagtgactggtgacatcccttatttgggttcacatttaagagatgatcacaaagtggatatgcacacggggtgcacattcaaccatcgttacgtgaaatcaaatcctcgagaagtagaaaatgccacatggatgctgacggtcttccattgttttggacagtatttctgtctccactttgaggccttccagcttggcatggccctggtttatatgcatttctaccatttatgggtgatgaacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70488" stop="75032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70788" g_stop="71309" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71310" i_stop="73541" i_length="2232">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73542" g_stop="73928" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="910" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73929" i_stop="74625" i_length="697">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.189" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74626" g_stop="74732" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="1016" r_length="106" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U570954" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1016</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70788" e_stop="71309"/>
          <exon e_start="73542" e_stop="73928"/>
          <exon e_start="74626" e_stop="74732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATTTGAAGGTGATCCTCATTTCTCTCACAGAAATTCAGAGCCACCGGAGAGGAAGAAGAAGAGGGTGGGGTGGG-GGGTTTTCAGGGAGAAAAAAAGTTTGTTTGATTTGGTTCTTTCATCAGAATCCGTTGCCGATCTCTATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAGGTAATTTTTCTTTTTGTTTGTTTGGGTTTTGTCCCTTTTCCTATTTGTGAGATTCGTTTGTTTTCGTTTTTTTCTATGTAAAGGTTGGGTTTTTATGTCTTCAATGTTAATTCTTTGCTGTTTTTTGTTGATGGAAAATGATGTTAAATGTGTTGGAAATGATATGTTGATCTTTCTATGTGCTATTTTTTCCTTTAAGTTAAAAGCTGATTTTGTTAGAATTTTCAAATGCTCTTTTGACTCTTTAGAAATATTGCAAACTTTAGATTGAGGTAAAGCATGATAATCGGGGTTGATAGTTTTGGTTGTGGTATGTTGAGGAAGTGGGGATGATGAAAGACTTTTTGGAGAATTTGATTAGGTTTTTATGAATTTCAGAATGTTTAAATATTTGATGATCAACTTGTAACAGCTTGAGTTTTCTAAAATGACTGCAGACTATTGGTTATGCTGTATACTTTTTGACTGCTGGTTGTTCGCCGAATGAAGGCCACTGAACTTAACTGTTTTGCAATTAACTTAGTAGTTGATTTTTTTTTCATGAATATGAAAGAGAGATGTTTGCTGCTTGTTGAATAAACATATCAGCCTTATGACTTTGTTCTTTAATTTGGATTCTTCCATGAGATGGATTAATGAGAAAGATCTTTTCAGCCCCTTGCACCCAAAGATGTGGGATAGCAGTCAATGAATTGGGTGAAAATGATGTGAGACCAGGGTTCAAATTTTAGCTGAGAAAATAAAAATTGCTTTGTGATTTCCTCTCGATCTAAATCTTGGAGGCAGAGTAACTTGATACTTCTGCTAGTGGACATGGTAGGTACACGGTGGAACAGTCTAAGAGAGCAGATAATAGGTCCAAACACCACCATTATGAAAAACGTACTCTTGTTAATGTATTAGTATAGCAGCTCTGTGGAGAGTTACGCTGTTGTAACATCTGCCAGCTGCGTAGATAGGTTATAGTCATATTCTGCTTATTAATGCTCTTGGAAGATCATTATCTTTGATTGAGATTTGTGCAGCCTTTTAGGCTTTTGCCATTTTAGCATTGTATACTAGTGTAGTCTTAGAAGAAGGTTGCATCAACTTGGTCCTATAGATGTTAACATATGTAGGATAGGGTTGTCTGGGAAAAGAAATGAGTCTTCTGTCGGGAAGGCACTCAATCTATGGCAAACCACATAACCCTTACTGCTTTCACCCCAGTCAATGGTAAATAAATAATTACATGAAATTCCTCCTCGCTGGACAGAAAATGAGAGACTTGAGAAGGTGGAAAAGAAACTGTTTGTGAAAGTTTTGATGTGTTTGTATAACTGCAATTTACAAAGTTAAATTATATTGTTTCACCCTGTTATTATGAGTAAATTTTCTTGGATAAGTTATAAATGCAAATGGTACTCTCGGTGAGAGTAATTCAGCTATGGTCTTCCAGGAAATATGGAATGCCACTAGGAATTGTATAAGCCGAAATTAGAAATACATCAGCATATATATAGGTATCGTCTTTCTAGTTTATTTATGGGAAGCCTGTAAGTTGGTATAATCTTTGAGTATATTTCAGGTGACTTCATTGCAATTTGACATCGCTTAATTCTAATTCACTAGGATTCTATGAGCAGATATAGGAACTCCTCAGCATATATAGTTGCTATATTTTTGTTTCATTTTTTTAAGCCTGTTGGTACAACCTGAGAGTATATTTCAGGCAACTTGATCGAAATTTACATTGCTTGTATCTTATATAATAAATGCATTAAGTTTGTTTTCTGTTGAGAACAAGTCGGAAACTTGTCATGCATAACCACAGTTGACTAAATATCTGCCGTGGTTGAATCCTAAGGAAGAAAGATGGTAGCATAGGGTAGAGTAGATTCGTAACTTGTCTACCAAATTATTATCAATTAGTAAAAGAAGGCTTTGGCGGCTAAATCTAATAGCAGACTGCGCTTTCCTACATCATATAGAGTGGAAAGCATGTCCTTAGAGAATGTTGGACTTGTATAACCACTAACGAATATGTGTCGTCTCCTTACCCTAGAGCTTTCTCATTTGTTAAATTTTGTTTTTATGATTTTCCTTGCTGCAAGTAAGTTATTTTCTGATGATAGTTTGTGGTGCATAAACTGGGTGACTCGTAACAATCGTCTATGCTTTTGTTCATTTTTGTAAAATTAGAGTTCTTACAGTTGTGACTTGTGAAGACTTAAAAGTTTGTTTATTTTGCAGTGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCCTTATTTGGTTTCACATTTAAGAGATGATCACAAAGTGGATATGCACACGGGGTGCACATTCAACCATCGTTACGTGAAATCAAATCCTCGAGAAGTAGAAAATGCCACATGGATGCTGACGGTAAGTCCATCAACTTTTTAATTTATTTTTTTGAGTTCAATAATGATGCTCAACATAGCATCATGATTCATGTGTTGTATGTTCCGTGCTATTTTGGTTTATGAAAGTTCAAGAATCCTTTTTATTCACCCTAACAATCAGGATGCTAAGAAATAGACCCGTAAAAGTTCTGTGGATGAATTATTGAAATGGCAGAATGTGGATAACCAAATTATAGCTTTGGGAAACCCTGTATTATCTTGTTCTCTGTTTCTGCAATATTTTCTCTCATGTTTTCTTTGATAGGTAGATCCCTTCCTAGAGACTCTGTTAAGGAATAGATTGGACAGTATAATATCATTCTGTTGAAGGTCACACGTCTCTCATTAATTGGATATTGAGTTTCTGAATATCGACGAAGGAAGAAAGACATCCTTATGATGGTCTTCAAATAAAGAAAAATGACATCCTTATGGTGATCTTCAAATTAAAAAAAATTGGCCTGCATGATGTCGACGAAGATGTACTGTGGCATTTTACTTTTATATTATGTACAAATACAAGATAGATAGGGATGAATTTCAAGGCACGACATGTTTTAATTTCTGCCTAGACATGTTGTGGTTGCCTGGATTCTGCATAATGTCATTTTCTCTATATCCATGTTGACGTATCCCCAGTTCATTCTCATTGACCAACCTTGTTACTCCTTTCTCAGGTCTTCCATTGTTTTGGACAGTATTTCTGTCTCCACTTTGAGGCCTTCCAGCTTGGCATGGCCCCTGTTTATATGGCATTTCTACGATTTATGGGTGATGAATCTGA</genome_strand>
        <mrna_strand>GGGGATTTGAAGGTGATCCTCATTTCTCTCACAGAAATTCAGAGCCACCGGAGAGGAAGAAGAAGAGGGGTGGGTGGGGGGGTTTTCAGGGAGAAAAAAAGTTTGTTTGATTTGGTTCTTTCATCAGAATCCGTTGCCGATCTCTATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCCTTATTTGGGTTCACATTTAAGAGATGATCACAAAGTGGATATGCACACGGGGTGCACATTCAACCATCGTTACGTGAAATCAAATCCTCGAGAAGTAGAAAATGCCACATGGATGCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCATTGTTTTGGACAGTATTTCTGTCTCCACTTTGAGGCCTTCCAGCTTGGCATGGCCCTGGTTTATAT-GCATTTCTACCATTTATGGGTGATGAACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570957" ref_strand="-" ref_description="SGN-U570957 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|4584255|emb|CAB40577.1| (e_value=8e-27) SINA1p [Vitis vinifera]; (*ATH) AT3G61790.1 (e_value=1e-21) | Symbol: None | seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035; contains Pfam profile PF03145: Seven in absentia protein family | chr3:22882768-22884665 REVERSE | Aliases: F21F14.2; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=1e-20) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3; ">
      <seq>aattattcaagaattgagatgacactaccaacacaaggagttgtaagatggttattaacaattgatacaactaaatcttcagggacaatgatatgtagctgggcagagcatcaagtttcgagggtacaaacagattgatgtctgtctctttacacccactgtcacacggacatacatccacaggaaaaaataggggagggaaaaggaaaaaaaagaaagaacaatcactctggagaaataaattagctacacagattcggtatgcacactccaccttctggattttgctgttctttccatatccttccagtgactcgaagttttagctcctttcgatcccctccaggaaaagaaaagtgccatgttacgttggattattagaccatcatgactgtccctgaccttgcggtggctatctcgaacacttcttggtgttccctcccatatgagctttctaccatttcctcctacttcgagactataactgtccaatctattccttaacagagtctctaggaagggatctacctatcaaagaaaacatgagagaaaatattgcagaaacagagaacaagataatacagggtttcccaaagctataatttggttatccacattctgccatttcaataattcatccacagaacttttacgggtttatttcttagcatcctgattgttagggtgaataaaaaggattcttgaactttcataaaccaaaatagcacggaacatacaacacatgaatcatgatgctatgttgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="75530" stop="73676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75230" g_stop="74746" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74745" i_stop="74256" i_length="490">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74255" g_stop="73975" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="767" r_length="281" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-U570957" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570957" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75230" e_stop="74746"/>
          <exon e_start="74255" e_stop="73975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTCAAGAATTGAGATGACACTACCAACACAAGGAGTTGTAAGATGGTTATTAACAATTGATACAACTAAATCTTCAGGGACAATGATATGTAGCTGGGCAGAGCATCAAGTTTCGAGGGTACAAACAGATTGATGTCTGTCTCTTTACACCCACTGTCACACGCACATACATCCACAGGAAAAAATAGGGGAGGGAAAAGGAAAAAAAAGAAAGAACAATCACTCTGGAGAAATAAATTAGCTACACAGATTCGGTATGCACACTCCACCTTCTGGATTTTGCTGTTCTTTCCATATCCTTCCAGTGACTCGAAGTTTTAGCTCCTTTCGATCCCCTCCA-GAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCATGACTGTCCCTGACCTTGCGGTGGCTATCTCGAACACTTCTTGGTGTTCCCTCCCATATGAGCTTTCTACCATTTCCTCCTACTTCGAGACTATAACTGTAATTGCGTGCCTCAGATTCATCACCCATAAATCGTAGAAATGCCATATAAACAGGGGCCATGCCAAGCTGGAAGGCCTCAAAGTGGAGACAGAAATACTGTCCAAAACAATGGAAGACCTGAGAAAGGAGTAACAAGGTTGGTCAATGAGAATGAACTGGGGATACGTCAACATGGATATAGAGAAAATGACATTATGCAGAATCCAGGCAACCACAACATGTCTAGGCAGAAATTAAAACATGTCGTGCCTTGAAATTCATCCCTATCTATCTTGTATTTGTACATAATATAAAAGTAAAATGCCACAGTACATCTTCGTCGACATCATGCAGGCCAATTTTTTTTAATTTGAAGATCACCATAAGGATGTCATTTTTCTTTATTTGAAGACCATCATAAGGATGTCTTTCTTCCTTCGTCGATATTCAGAAACTCAATATCCAATTAATGAGAGACGTGTGACCTTCAACAGAATGATATTATACTGTCCAATCTATTCCTTAACAGAGTCTCTAGGAAGGGATCTACCTATCAAAGAAAACATGAGAGAAAATATTGCAGAAACAGAGAACAAGATAATACAGGGTTTCCCAAAGCTATAATTTGGTTATCCACATTCTGCCATTTCAATAATTCATCCACAGAACTTTTACGGGTCTATTTCTTAGCATCCTGATTGTTAGGGTGAATAAAAAGGATTCTTGAACTTTCATAAACCAAAATAGCACGGAACATACAACACATGAATCATGATGCTATGTTGAGCA</genome_strand>
        <mrna_strand>AATTATTCAAGAATTGAGATGACACTACCAACACAAGGAGTTGTAAGATGGTTATTAACAATTGATACAACTAAATCTTCAGGGACAATGATATGTAGCTGGGCAGAGCATCAAGTTTCGAGGGTACAAACAGATTGATGTCTGTCTCTTTACACCCACTGTCACACGGACATACATCCACAGGAAAAAATAGGGGAGGGAAAAGGAAAAAAAAGAAAGAACAATCACTCTGGAGAAATAAATTAGCTACACAGATTCGGTATGCACACTCCACCTTCTGGATTTTGCTGTTCTTTCCATATCCTTCCAGTGACTCGAAGTTTTAGCTCCTTTCGATCCCCTCCAGGAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCATGACTGTCCCTGACCTTGCGGTGGCTATCTCGAACACTTCTTGGTGTTCCCTCCCATATGAGCTTTCTACCATTTCCTCCTACTTCGAGACTATAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATCTATTCCTTAACAGAGTCTCTAGGAAGGGATCTACCTATCAAAGAAAACATGAGAGAAAATATTGCAGAAACAGAGAACAAGATAATACAGGGTTTCCCAAAGCTATAATTTGGTTATCCACATTCTGCCATTTCAATAATTCATCCACAGAACTTTTACGGGTTTATTTCTTAGCATCCTGATTGTTAGGGTGAATAAAAAGGATTCTTGAACTTTCATAAACCAAAATAGCACGGAACATACAACACATGAATCATGATGCTATGTTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568446" ref_strand="+" ref_description="SGN-U568446 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157355275|emb|CAO48651.1| (e_value=8e-74) unnamed; (*ATH) AT3G49240.1 (e_value=2e-63) | Symbol: EMB1796 | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:18266964-18269085 FORWARD | Aliases: F2K15.100, EMB1796, EMBRYO DEFECTIVE 1796; (*SWP) sp|Q9M9X9|PPR18_ARATH (e_value=8e-18) Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710; ">
      <seq>gggaaggttcaaagacgcaatcaatgtttttaacagcatgggagagaagaggtgtagaccagacacattgtcttacaataatctgattgagcagttgtgcaaaaatgacttgttgggtgaggctgaggagctctataaggatatgggcgaaaaaggggtcagccctgatgagttcacgtttgttttgttgatggatacttgctttaaagaaagtaggcctgatgacgctgctgcgtattttaagaccatggtggagtctaaattgaggcctaatcttggagtttatgataggttggttgatggtttggtcaaagttggtaaagttgatgaagcaaaatcattttttgatctgatgatgggaaagctcaggatgaatgatgatagctacaagtttatgatgaacgcattgtttgatattgggcagcatgatgaggtgcttaagattgtggatagaatgttgagggaggatccagctgatttctctgatgagttgcaagagtttgttcgagaagccttggcgaaggaaggtagagatgaggagttgaccaaacttatggatgatattgaaagggagaagaaagaagctgctgacagggaggctgaagcagctgaaaaagcgaaggccagtgcaagagctgctgtttcctctttgataaatagtcctaaattgtttggaaataagcagcctgaagagcagtcaacaattactggtgaggctgccagcatcaacgacaatgacaaacaagaggaggtgagtgttcaagaaactgctgcggaggctagttcctctggtgagggtggagaagctgagagccttgttgctgcagaagctagaagtgatggtgcactttgatgaggtagcagaatgataaaatatgttgggtgacaactaatgagaaacagtagtaggtttcctttcactctgccacacttgcaagcacgaactatataatgctcttatgataaattactagtgggaaattgtttgtaatttagatggaaatgaaatgaaatgatttttttgatcatcttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77618" stop="75982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77318" g_stop="76282" g_length="1037"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1037" r_length="1037" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-U568446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1037</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77318" e_stop="76282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGT</genome_strand>
        <mrna_strand>GGGAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599795" ref_strand="+" ref_description="SGN-U599795 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355275|emb|CAO48651.1| (e_value=2e-75) unnamed; (*ATH) AT3G49240.1 (e_value=2e-58) | Symbol: EMB1796 | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:18266964-18269085 FORWARD | Aliases: F2K15.100, EMB1796, EMBRYO DEFECTIVE 1796; (*SWP) sp|Q9SY69|PPR29_ARATH (e_value=3e-35) Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23; ">
      <seq>attcgagatggctctctccaagcacatctttttaacccatcacctcagaaccttagctaaaccccattatctccgccaccctcaaccaccaccttccttcatttccctccgtctcctttcatttgccactccggaagaagctgccgctgaacgccgtaaacgcaaacgccgactccgtattgaaccccctttatcatccctccgtcagcaacatcaacctcgtcccactacacctcaaaaccctagctccactaataacccgaatgcaccgaagattcccgaaactgtttctgtactatccggtaatagacttaatctgcataatcggattcttaaactcattcgtgagaatgatttggatgaagctgctttgtacacgcggcactctgtttactctaattgccgccctactatctttacttgcaacgctgtaatggctgcgcaactccggcagtccagatattctgatctactttctcttcaccggttcatcacgcaggctggtattggggctaatattgtcacacataatttgctcctcacggcttttatggattgccggaaaactgatatggctatggaacattacaagcagctcatcaataatgcaccttttaacccttccccgactacgtatcgganacttattaaaggacttgttgataacaacaagattgatagggcgangganttgannnangaaatgntgtccaaaggnnttantgntgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78731" stop="77437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78431" g_stop="77700" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-U599795" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78431" e_stop="77700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAGATGGCTCTCTCCAAGCACATCTTTTTAACCCATCACCTCAGAACCTTAGCTAAACCCCATTATCTCCGCCACCCTCAACCACCACCTTCCTTCATTTCCCTCCGTCTCCTTTCATTTGCCACTCCGGAAGAAGCTGCCGCTGAACGCCGTAAACGCAAACGCCGACTCCGTATTGAACCCCCTTTATCATCCCTCCGTCAGCAACATCAACCTCGTCCCACTACACCTCAAAACCCTAGCTCCACTAATAACCCGAATGCACCGAAGATTCCCGAAACTGTTTCTGTACTATCCGGTAATAGACTTAATCTGCATAATCGGATTCTTAAACTCATTCGTGAGAATGATTTGGATGAAGCTGCTTTGTACACGCGGCACTCTGTTTACTCTAATTGCCGCCCTACTATCTTTACTTGCAACGCTGTAATGGCTGCGCAACTCCGGCAGTCCAGATATTCTGATCTACTTTCTCTTCACCGGTTCATCACGCAGGCTGGTATTGGGGCTAATATTGTCACACATAATTTGCTCCTCACGGCTTTTATGGATTGCCGGAAAACTGATATGGCTATGGAACATTACAAGCAGCTCATCAATAATGCACCTTTTAACCCTTCCCCGACTACGTATCGGATACTTATTAAAGGACTTGTTGATAACAACAAGATTGATAGGGCGATGGAGTTGAAGGAGGAAATGTTGTCCAAAGGGCTTAGTGCTGATCC</genome_strand>
        <mrna_strand>ATTCGAGATGGCTCTCTCCAAGCACATCTTTTTAACCCATCACCTCAGAACCTTAGCTAAACCCCATTATCTCCGCCACCCTCAACCACCACCTTCCTTCATTTCCCTCCGTCTCCTTTCATTTGCCACTCCGGAAGAAGCTGCCGCTGAACGCCGTAAACGCAAACGCCGACTCCGTATTGAACCCCCTTTATCATCCCTCCGTCAGCAACATCAACCTCGTCCCACTACACCTCAAAACCCTAGCTCCACTAATAACCCGAATGCACCGAAGATTCCCGAAACTGTTTCTGTACTATCCGGTAATAGACTTAATCTGCATAATCGGATTCTTAAACTCATTCGTGAGAATGATTTGGATGAAGCTGCTTTGTACACGCGGCACTCTGTTTACTCTAATTGCCGCCCTACTATCTTTACTTGCAACGCTGTAATGGCTGCGCAACTCCGGCAGTCCAGATATTCTGATCTACTTTCTCTTCACCGGTTCATCACGCAGGCTGGTATTGGGGCTAATATTGTCACACATAATTTGCTCCTCACGGCTTTTATGGATTGCCGGAAAACTGATATGGCTATGGAACATTACAAGCAGCTCATCAATAATGCACCTTTTAACCCTTCCCCGACTACGTATCGGANACTTATTAAAGGACTTGTTGATAACAACAAGATTGATAGGGCGANGGANTTGANNNANGAAATGNTGTCCAAAGGNNTTANTGNTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572068" ref_strand="+" ref_description="SGN-U572068 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157343196|emb|CAO66685.1| (e_value=3e-51) unnamed; (*ATH) AT2G32060.3 (e_value=3e-42) | Symbol: None | 40S ribosomal protein S12 (RPS12C) | chr2:13646122-13647257 REVERSE | Aliases: None; (*SWP) sp|Q9XHS0|RS12_HORVU (e_value=5e-49) 40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12; ">
      <seq>gcctcgtgccgtataaattagttgtatttggtacccaaatgtgggatctgcatatgcacggtatatttgggatgagggtttatggagtctattgttgattctatttacctaactaaattccgtgttttacttttgagaggaacaggtagcagagtttttggtataccaatattgctggaaaaatgtcgggagaggatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaattcgcggtgcatatgaaggaagacctcttccctccctaccaaaatgataatccagaagacattagttctgcagatgattttcagtttttaagattaggttgaaactattaaacctagcatcggaaaactctctctgttgttcttttactttgttgacttcaaaaggaattaaatactcaattggaaattgcaggttttattttaggttgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80837" stop="84343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81148" g_stop="81316" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="190" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.566" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="482" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="548" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83769" g_stop="84043" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="823" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U572068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81148" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="84043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAGGTTGCTATG</genome_strand>
        <mrna_strand>TTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAGGTTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596235" ref_strand="+" ref_description="SGN-U596235 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcctcgtgccgtataaattagttgtatttggtacccaaatgtgggatctgcatatgcacggtatatttgggatgagggtttatggagtctattgttgattctatttacctaactaaattccgtgttttacttttgagaggaacaggtagcagagtttttggtataccaatattgctggaaaaatgtcggggtaagtagaattcagttaattttattgtcaaattcagtttgtttacttgactgtaagtgttgctgtcgatgtcgttttcggttgtaatgagctggagaccagtatcttgatcagctttaccagtagtttttgcaacttggtgtgtgattatgtttgtgtgtgtagtagtctgttgttatttgagtgctatttgaactattcatttacaattacattcctatgtttgcgaggagccattagtttggttatagatttgtatgccaatgtagggaataagtgtgctgtttagtgaatcgcttctttcagggagttcgttacaaattattgagtattagaactatctgggtctaagtatagtggaatcgatatattgggatangtgattgattgtagtacacaagactttgtacgatcgtgtcatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80837" stop="82041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81148" g_stop="81741" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="615" r_length="594" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U596235" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81148" e_stop="81741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTT</genome_strand>
        <mrna_strand>TTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATANGTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596863" ref_strand="+" ref_description="SGN-U596863 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157357958|emb|CAO64970.1| (e_value=7e-45) unnamed; (*ATH) AT1G16430.1 (e_value=5e-42)  Symbol: None | surfeit locus protein 5 family protein / SURF5 family protein, similar to Surfeit locus protein 5 (surf5) (SP:Q62276) (Mus musculus); similar to Surfeit locus protein 5 (SP:Q15528) (Homo sapiens) | chr1:5614613-5615504 FORWARD | Alias... ; ">
      <seq>cgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccacgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcaggatttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggtttttccctctctctcctcttactaagtatatttgtctaccttgaaggtagtaatacatactatgaggttactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86329" stop="84085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86029" g_stop="85936" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="160" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84439" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="480" r_length="320" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84438" i_stop="84180" i_length="259">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.454" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84179" g_stop="84169" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="491" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="554"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-U596863" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86029" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84439"/>
          <exon e_start="84179" e_stop="84169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGATTATCCTTATTGAAAGATTCAAGTTGGAGAAAGTTGTGTTCTTGAAACAGCATACTGTTAG</genome_strand>
        <mrna_strand>CGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGATTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGG--------------TT-TTTCCC--T-CTCTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAATA...................................................................................................................................................................................................................................................................CATACTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563433" ref_strand="+" ref_description="SGN-U563433 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157357958|emb|CAO64970.1| (e_value=2e-43) unnamed; (*ATH) AT1G16430.1 (e_value=2e-41)  Symbol: None | surfeit locus protein 5 family protein / SURF5 family protein, similar to Surfeit locus protein 5 (surf5) (SP:Q62276) (Mus musculus); similar to Surfeit locus protein 5 (SP:Q15528) (Homo sapiens) | chr1:5614613-5615504 FORWARD | Alias... ; ">
      <seq>ggcgattggcggccaatcggccgaattcacgatttactacttcaaaatttctaagatttaatgctttttgatagcatgaattaatttgaacttgtggtctctgttaatttgaccattgcaaatttctgataaaaataagaaaaaggaagttaggtttcaaccaacaatgaataaaggagcaaatgttggaggcggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaggtaccaattttactgctattttgaagatttcactctatagcttatcatatatgtcacaccatggacactgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86529" stop="83929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86221" g_stop="85936" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="316" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="382" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84229" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="930" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-U563433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86221" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTACTACTTCAAAATTTCTAAGATTTAATGCTTTTTGATAGCATGAATTAATTTGAACTTGTGGTCTCTGTTAATTTGACCATTGCAAATTTCTGATAAAAATAAGAAAAAGGAAGTTAGGTTTCAACCAACAATGAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGAT</genome_strand>
        <mrna_strand>GATTTACTACTTCAAAATTTCTAAGATTTAATGCTTTTTGATAGCATGAATTAATTTGAACTTGTGGTCTCTGTTAATTTGACCATTGCAAATTTCTGATAAAAATAAGAAAAAGGAAGTTAGGTTTCAACCAACAATGAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596862" ref_strand="+" ref_description="SGN-U596862 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggggaccaaattggatttctcatcattagattgtttggccagttactaccttcaaggtagacaaatatacttagtaagaaggagaaaccaatgggaaacaaaaaggtgattgcacccatggtcagggcattgtttattggctgcaagaaggaagactacgggttctttctgcaaaagaataatagggcgactcaagctccttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84100" stop="84901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84399" g_stop="84601" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U596862" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84399" e_stop="84601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACCAAATTGGATTTCTCATCATTAGATTGTTTGTCCAGTTACTACCTTCAAGGTAGACAAATATACTTAGTAAG-AGGAGAAACCAATGGGAAAGAAGAAGGTGATTGTAGCCATGGTTAGGGCATTGTTTCTTGGCTGTAAGAAGGCAGACTACTGGTTCTTTCTGCAGAAGAATAATAATGTGACTCAAGCTCCTTAA</genome_strand>
        <mrna_strand>GGGGACCAAATTGGATTTCTCATCATTAGATTGTTTGGCCAGTTACTACCTTCAAGGTAGACAAATATACTTAGTAAGAAGGAGAAACCAATGGGAAACAAAAAGGTGATTGCACCCATGGTCAGGGCATTGTTTATTGGCTGCAAGAAGGAAGACTACGGGTTCTTTCTGCAAAAGAATAATAGGGCGACTCAAGCTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582456" ref_strand="+" ref_description="SGN-U582456 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|4519673|dbj|BAA75685.1| (e_value=6e-169) WREBP-2 [Nicotiana tabacum]; (*ATH) AT4G06634.1 (e_value=5e-123) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam PF00096: Zinc finger, C2H2 type | chr4:3764299-3766536 REVERSE | Aliases: None; (*SWP) sp|Q2V3L3|Y4634_ARATH (e_value=5e-122) Uncharacterized zinc finger protein At4g06634 OS=Arabidopsis thaliana GN=At4g06634; ">
      <seq>aagagcctctacaatggcggattcacttctctccattaacttgtcagaacccaaaatcaacaataaatttccccgcaaacattgaactcaaaccctaaccctaatcgtgaaaattcatctaataaattgcagttcaccggttgacgaggagatggaaactcacatgtctcatcatcatcagtatgaaagacgacccatatacaagtccaaagctcctgcttccaaatggtttaaggaatgggtcccacaagatgttgtagcaactggtgggaagtgctacgtcttaaagtgggtgaatgaggccacattaaaagctctgagggagaagccaaaagaggcaggagtacctgtgtcagaaccagagccaactactgaagttctttttctttgtagctatgaaggttgtggaaagacatttattgatgctggggccttgaggaagcattctcacatccacggggagaggcagtatgtatgccactatgagggttgtggaaagaaattcttggatagttccaagctaaaacgacactttcttattcacactggagaaagagactatgtgtgtccacatgaaggctgtggtaaggcattctcactggattttaacttaagatcacacatgaaaacacactcccaggagaactatcatatttgcccgtatccagaatgtggaaagcgatatgcacatgagtacaagcttaaaaatcatatttcatctactcaccagaagaacaacacaccagatgcacatgcacatccacatccacatgctcatgcaccaaagtataccccgcctgtggagaagccagtgaagactccgaaatcttcttcagcagcttatggctcatcatcatctgaccgtccttacagctgtccatacgaaggttgtgacaaatcttacatccatgagtacaagctgaatcttcatttgaggaacatgcaccctggtcatttcccagaggagaacgcgagaaatgttcaatccactgctgacaatgagatagatgaaggcagtgatcaggacgcatatgctgcaagacgtggaaacggaagaagtcagaaacagagcagaccaaaaccaagcttaaagcagccgcctttgaaagttgcacgcaaaagctcatctagtgctgctcaagccaatctaattatatcgaagaaaccttggccggttaaagaagagaacttcaatgaagaagatagtgaagaaacagaggaggagcgggatgatgttggcgatggatggaggtatggtgaaaacgatgacgacgatgaagagactgaagaagatgactaggcttatatgtcatacatactcataggtagttaagtagtacactatgttttgggatataaatggttgtcattgtctagaaaatgggattggtccttgcttgttaatgcctttttgtgttttatgaaaagcatgaggctttagctgtttcctaaaccccaccctctcacctagctccatggaacatggagatttgcagaacactctgagcttcttattcatttttattccataaaaacaaactgacatctcttattactattattattatgtataaatttggccatttcgaggacttttctccataattgaaatatataatcaaacaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94912" stop="86271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94612" g_stop="94373" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94372" i_stop="93148" i_length="1225">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93147" g_stop="93089" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="299" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93088" i_stop="92920" i_length="169">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92919" g_stop="92720" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="499" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92719" i_stop="90641" i_length="2079">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90640" g_stop="90551" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="589" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90550" i_stop="88301" i_length="2250">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88300" g_stop="88157" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="733" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88156" i_stop="87433" i_length="724">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87432" g_stop="86534" g_length="899"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="1629" r_length="896" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-U582456" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94612" e_stop="94373"/>
          <exon e_start="93147" e_stop="93089"/>
          <exon e_start="92919" e_stop="92720"/>
          <exon e_start="90640" e_stop="90551"/>
          <exon e_start="88300" e_stop="88157"/>
          <exon e_start="87432" e_stop="86534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCTCTACAATGGCGGATTCACTTCTCTCCATTAACTTGTCAGAACCCAAAATCAACAATAAATTTCCCCGCAAACATTGAACTCAAACCCTAACCCTAATCGTGAAAATTCATCTAATAAATTGCAGTTCACCGGTTGACGAGGAGATGGAAACTCACATGTCTCATCATCATCAGTATGAAAGACGACCCATATACAAGTCCAAAGCTCCTGCTTCCAAATGGTTTAAGGAATGGTAAGCGAAACAGCTCAAAATTATTCTCAATTCCGTATTAATCACTTGTTAAATTATGCTTTTATTCCGTATGGAAAAAGATGTTACTTATAAGCATGGGATAGAAGAGGCGAGAAGGATTTCTGTTGGTTTAAGGACCGGAAGAGCAGGATAGATACAGGAGAATTAGTTGTCTGATTCCAATTCACTACTCGAAGCTACTTTCTAGTGCTATATCGGAGGAGCGGTGCACAAGCAATTATAACTATGAATTGAATTTGCTTCTTGATTTCTTTCTGCCAATTATAATTGGAGACTTCATAGGATGGGCATTTGTTTGTAACTTGATGGGGCATGATTTGCACTAATTTTTATCAAGAAATTTTTCTGAATGAACGGGATTTGATTAAAAGGAGTCATATGTGGGTCTGATTCATGTGCGTTTTTTGGAGTTCTGGGGTAGTTTTTATCATGTTTAGGTTTTGTTAGATTGACTGTCTGTCTTATTGGGTGTAAATTTGACTGTGATGGTGCATCTATGGAGGAAAATGGTTATAGTTTTATGATTATCTAAGGATAGTATCAAGCAACTAAGCGTCAATCTCAAATTAGTTCAATCGGCAGCATGAATCTGTTATATACTCAACTCTATTAGGTCTCAGTATTCATCATATTTGGACAATTTATGTTACCGTTAACCTACCGTAACACTCCTCCATTATCTGGATATTGGATGGGCTAATTCGTTAAGAAGCTCACATGGGAAAAATTGTAAAGATGCTAAAAGGGAAGTATTTCTCGTCAAGAGAAAGATGATGTGATTCAGTATGAATCAGTTGTATTGCAACCTCGAATTTGCAACTTCTTTGCTTGATATTTTTCATCAGGGGAGGGTTAGGACCTAGAATTCAGCCACTAAAAGCTGCAAAAGAGATCACTGGACAAATTGCTTCTTTAGCTCCAAGCAAACTTGTCAGTTCACAATCATGTTAGGGAGAACTGGAGGAGTGATTACAATAATACATTAGAAAATCGCATTGTATCATGTTCCTTGTATTGCTAATGTTCTATAACTTGCATGAACTGTTAGTAGGTTAGATACATGTTTGATTTGTATAACCGTTCCTTTAATCATCTCAGAGGATCAGTCATTAGTCACTGACTGATGAAAGTATGTTTAGCCATGTATTTTCATTATAATTCCTACCATGTTTTAATTCTTTTACTAAAATCAATTTTATCCCAGGGTCCCACAAGATGTTGTAGCAACTGGTGGGAAGTGCTACGTCTTAAAGTGGGTGAATGGTAAGTTCTGAATTCTGCTTCAGTACATCTTTTGGATAGTCTTGTGTTGATTAATCTTATATTCTTTATTTTTCCGTATCTTTTCTTGATTTTCAAATGCATATGCTGTGGCTTTTGGGTTGTACATTGAATTTGACCTTATACTCCTCCTTTCTATTTTGTTTATCAGAGGCCACATTAAAAGCTCTGAGGGAGAAGCCAAAAGAGGCAGGAGTACCTGTGTCAGAACCAGAGCCAACTACTGAAGTTCTTTTTCTTTGTAGCTATGAAGGTTGTGGAAAGACATTTATTGATGCTGGGGCCTTGAGGAAGCATTCTCACATCCACGGGGAGAGGCAGTATGTATGCCACTATGAGGGTTGTGGAAAGGTGAGTTTTTGTTGTCTTTGTATTGAGACTGCACTAAATGCTTGATTATTTCATTGTATTGATTCTACCATCATTTTACTTATTTTGCTTTCATGATACTTCCCTCCGGACTCTGGCAGGGTTTGATTGGGGGAGGAAGTGATGGGCATATGGAATTCGTTCTTTTTCGCAATTATATTACCTTCGTTTATGTAGTGCTTCTTTCTAGAAATCTGCTTTTCAAGATACCGTAGGTGTTCCTTGAGCTCATAAGATACTTCCGTAATAAATATTGATTGGCTGAGGAGTTGATTTAGGTTGTATTACTTATCAAACAAACGTTCACTGAAGTTGTATTTCCGGAAGTATTGTTTCATTTACTGCTGAACCGTCTTCAACCATTTTGAGCCTCAGATTGTGGGAAAAAAGAACCTCTCAATCTTATACAAGGAAGAGGAAAGGTTTGCGTATGGTGAAAAAAAGAAAAATCAGAGTTAGGTTTGTACAACAACTACTACTACACTTCAATCTCAAGCATTACTCATTATCAAGTAGGGAATTGAAAAATGTCAAAGATCATTCTTGAGATTTTGAGTTATCTGTCAGTGAAAGGAACGAAGTTTCAAAAAAAATAAAAAATTCCCATAACTGTAGTTTGTTCCCTTCCTTAATTTGGTTAAGTGGGATAATTTACAACTTCTTGGTTATAAAGTTATCGCAGTAGAGCTTGCTTGGACACCACCTTACAAAAGGTTATACATTAAGGGAGAATTACCTATAGTGAAGTTACCCTGCTTCCAGGGAGATTAGAAGCCAAGATGTTAAGGATCTTTGGAGCTCAGCAACACAATTCTGGAATGTTCCAGATGGGACGTCTCATTGACACAGTATTCATTATTCATAGTATTGGATGTGAGACTTTAAAGCTTACTTTTCAGGGGAAAGTCCGTGTTTACATTTTTTCATATCAAACTTCTTTTCGCATAAAGTGTTCTCAACATGATTTATGCAAACAACAAAGTTCTGTCTTCACTTGTTGAGAAGCAGTCGCTCATTTAAACTTACTCCCTCCGTTCTGGTTGTCCACCTTTTTGCTTGGTCTCACTGGTTCAGACTTCAGAGGAGCAGCCATTTTATCATGGTTGCCCTTAAACTATCCATTTGTTACTCTACCATAATGTTTCGTCAGGTGAAAAATATTGCATGGATGATTTTGCTAGGCGAAAGGTCATTCCTCTTATAAAAGAAAATGAAAATGTTCTATGTTCTTTGTTCGGCCAAAAGATGAAAGCATCTAAAAGAAAGTGAGGAATGGAAAGAATAAAACTAATAATGGTTGTAAATCTTGGTGAGGCTGTAGATACCTGGTAAAATTTTCAAGGTGCGAGTAAGTAAGCTAGCGAAGACACCACAGTTAACAAAAACAAATAAATGTAATTAGACTATCACTAATTTATCTTATCCAACCAAGAAATAAATAAAACTAATAACTGTTGAAATGATTATTCCCAGTGAGAATGAGAGATCCGAAGGGAAGGAAAAAAGAATTGGAGGGGAGATTCCATTCAGTGCCATGAAGGGTAAATGTATAACAGTGTCAATTTTTGGTCAGTAGACACTGTTTTAGGAGATTGGAAAAAAGGTTCAGGGGCTAATCAGTTGGTTTGGAGTAGGTAGTAGGTACATTTTCTTCTTTTAAAAAAGTACCATGCATTCAGGCTAAACCAAGACTTTCACTTTAGGTAAATATTTTTCAGAGCACTGTTTGATTTTCTCTTTGATGGAAGAGATTGAGCGTCAAAGGAATCTTGCGCAAAATAGGAGTCAATGCATAGTGTGTTGGTGAATATATTAGATTACCATAAAAAAAAACCAATAGTCTTATTGGTGGGGATAAAAAGCAAGCAAGACAATAGATTTAAGTGTGTGCTCATCATGCATGATTGGATTTTGGTTTGCCAAACTGTTTAGGGTGAAGAAATAACAAATCCATTTATTTCTACGATTTGCAAGTTCAAGCATATGCATCCTTTATTATTATTTTTTTAAACCTTGTGATTTTATTACAGGTCTTTAATTGCATCTTGTCTTCTTTTGCAGAAATTCTTGGATAGTTCCAAGCTAAAACGACACTTTCTTATTCACACTGGAGAAAGAGACTATGTGTGTCCACATGAAGGCTGTGGTAAGGTAATAAATCCATCTGCTATCCAAATACTTCTCCCAGCATACATTTTGTTTCTATTGCAACTGTTATAATAATAATGCTGTCCTTTTCTCTTGTATATAAATGAGACGTGTACATTCTCTTAACTTTCATATATTGGTGATATCTGTGACAATTTTCAATACCAATATTAGTTATAATTGTATTGGGAATTTTGGAAGAAACTATGGACAACTTCTCGATGATTTGAGAATATGTCTTCTGTAAGAACGTCAACATTGGCTATGTGGATGTTAGATGCGTATTGGAAATTGGAATGTCAAGAATGGTTCCTAAGTACTGCAAGTGCTCAATGTTTGTCTGAAATGGAAAACAGTACTTCCTTCGTTCTAGTTTGTGGCCCTATTTCTTTTTTAGTTTGTTCCATAAAGAATGGTCTCTTTCTAAATTTGGAAATAATTTAATTGGCCAAATACACAAGCAGCTCCCTAAACTTATCCAATGCTTTCAATACGACACCTGAACCAAGACCAGTACCTATGAATGCCTATACTACTCAAGATACGTACCTATTGATTGCAAAATGCTAACATGGCTAAAAAGTGTTATTCACTTCCTTGGGCATGTGTATCAATCCCAAAATAATTGTTATATTCCTTTTCATTAAAAATTCACATTTTTCTCTCCATTGCCGCCACCATCCACCATTGCTTCCACCACTTCTTTTTCTGCCGCCGCTGCCCTTCTCCTCCTTCCACCATTGCTCCACCAGTGCACCTTCAAATTACCACTCGAAGAATCACCTTCAACCTCTGAAATCACCTCCCTCACCTTCATCCTTAGCGACTCATCATCATTTAAACAGCTACCAAAAATTCCTTCCTGTCATCTGAAACCACACCCACAACCACCAAAGCCCACCTAAAAAAACAAAATAACCAGTTTCCTTCCATGAACTGTGGAATCTCCAGACACAAACATTTACACGAACACTTGCAGTGCACATACTATGCACTCACTCTCAGTCACACCACTGCTGCCATACCATACACGCCTCTTAACCTTCACCCCTCCCAGTTTCATGCCATTTCCTCATCTTTAAAACCACCATATGATACCACCCTTTGTTCCCTAGCAGCTGCACACATGGACGTAGTAGAATTCATTCAATCAGGGATAATCTCCATGTTATCACCATCACCGACAGCAGGTAATTGGGGGGATGGGGGGGGGGGGGTTCTGAGGGGAAGGAAGAAGAGAAGGGGGAGGAGACAAGTCCGGGGAAAGACATTGGGGTGGGGAATTGAAGGAGAAATAAGTGGGTGGGGGGACAACAGGAGGGGCGTGTGGTGATTGGTATCGATTGGAGGGGGTTTCTGATGTGGAAGAATCTATGAGATTCATAGTTGCATTACTTGTAGCTTCCTTTCTATGGGTACATAGGATCAAACGTAAAGCAATGCTCTCTTGGCAGAGTTATGTTAAATAACCATACAAATGTTATTGCTTGTTTAAGACCACGAGTTCCAAAAGTTTCCACTTATTTCTTTAATTTTGTGCCCAGTCAAATAGGTTAACAAACATTGAAACATAGTAATTGCGTGAAGAACAAATACAGCTTGTGCGATTGGGCACTTTCCTGGCAACTCTGTTCTCTCTGCCAAAAGAATAAAAGAAAAGGAAAATAATTAAATTAAAGAGAAGAAACCCCAGAATACCAAAAACAAAATGGGAACTTCCTTTATGCAAAAGGTGCAAGGTTTGCTTCTCATCAGGCGCCCTATGATGGGCTTCTTTGTCCCACAACTCCAAAGATAAAACAAAGAAAAGAAAAGAAAGGGACAAGAAACAAAAAAAAAATAGAAGTGTTTGTATAACCCTTATTTATGTTTCCAAATTCTTTCTGGCTCAGGGCTTTGGTTTAGTGATAAGAGAGCGACACTTGTAGTGTGAATTAGGCCCACATCCTGAGTTTGAACCCAGTCGTAGATAATTTGATAAAAGCTTGTTATTTAAATGGAAAGGGCTAGAGTATGGGCCTATTATCCACTAAGTTTAAGCTGTTCGTCAGGTGGCCCTTGGGATTTCTTGGCCATCAAAAAATGTTCCCAAATATTTTCTGTTACTTTAGCCATAGGAATTCTATCTTGTTTCTTGTTCTGTTCGGGATAAATGTCATGGAACACAGACATTGCTTGTATGTATATGTTTTTATGACACTTCTGCTTCTTATTGTGGTTCAATTTCACAGATTCCTTTTGAAATCAATGCAGGCATTCTCACTGGATTTTAACTTAAGATCACACATGAAAACACACTCCCAGGAGAACTATCATATTTGCCCGTATCCAGAATGTGGAAAGCGATATGCACATGAGTACAAGCTTAAAAATCATATTTCATCTACTCACCAGAAGGTTTGTGATTTGCTCTATCGTCCTTGTCTTGACCAGGATATACTTATACAGACTTTATGAACTTTTTCCATCTTTGATCACAAACAAGGTGCTAAATGTCCTAAATGTTTCATCAATAATCACTTGCTGTTTCTTCCCAACTTTGGATCGTTAACATTATTTAAGCCAATTCTTCTTTGTAAACCAGACTGAACTTTAATTTCATATGCACATGTTTACTTTCTTTGAACATATTTATCTTTAAGATTTTCCTTGCCCATAAATTCCAATATGCTGGAGGAGCTCTGTTAGATATCTTTATTGGTATTTTTTATGTTGCATACCCATTACTCCTTCATTTCCTTGTTAAAGATGTTTTAAAGGAAAAAGATGCTATTCAATGTGTAATCTTTTCCTCAAAATAAATGTGGATAGAATTTTTATCGCCTGTTAATGGTTGGCTTCAGTCACTTTTAAGTATACTGCGTAGAATAGAAGTTGACTTCATAACCAGAACTCAGCATAAAAGACAGTAGTTATGTAGGGATTAATGTCCTGTATCACTTCATGCATCACTAAATTTATCACTTTTTGATGTTTGTGTTGACAGTTTCATCTAATGATTCACTAGATGTTTAAGCTAATAGTTTCCTGTAGACATGTCACATGTGGATGCACCTTGTTTTTCATCTTGTAACGTAGCACTTGAAGCTGGATTTGCTTATTAAATCTTTTCATTATGTAGAACAACACACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCCTCTCACCTAGCTCCATGGAACATGGAGATTTGCAGAACACTCTGAGCTTCTTATTCATTTTTATTCCATAAAAACAAACTGACATCTCTTATTACTATTATTATTATGTATAAATTTGACCATTTCGAGGACTTGAGATCCATAATTTGTTATATATAATTCAAACAATTA</genome_strand>
        <mrna_strand>AAGAGCCTCTACAATGGCGGATTCACTTCTCTCCATTAACTTGTCAGAACCCAAAATCAACAATAAATTTCCCCGCAAACATTGAACTCAAACCCTAACCCTAATCGTGAAAATTCATCTAATAAATTGCAGTTCACCGGTTGACGAGGAGATGGAAACTCACATGTCTCATCATCATCAGTATGAAAGACGACCCATATACAAGTCCAAAGCTCCTGCTTCCAAATGGTTTAAGGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCACAAGATGTTGTAGCAACTGGTGGGAAGTGCTACGTCTTAAAGTGGGTGAATG.........................................................................................................................................................................AGGCCACATTAAAAGCTCTGAGGGAGAAGCCAAAAGAGGCAGGAGTACCTGTGTCAGAACCAGAGCCAACTACTGAAGTTCTTTTTCTTTGTAGCTATGAAGGTTGTGGAAAGACATTTATTGATGCTGGGGCCTTGAGGAAGCATTCTCACATCCACGGGGAGAGGCAGTATGTATGCCACTATGAGGGTTGTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCTTGGATAGTTCCAAGCTAAAACGACACTTTCTTATTCACACTGGAGAAAGAGACTATGTGTGTCCACATGAAGGCTGTGGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTCACTGGATTTTAACTTAAGATCACACATGAAAACACACTCCCAGGAGAACTATCATATTTGCCCGTATCCAGAATGTGGAAAGCGATATGCACATGAGTACAAGCTTAAAAATCATATTTCATCTACTCACCAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCCTCTCACCTAGCTCCATGGAACATGGAGATTTGCAGAACACTCTGAGCTTCTTATTCATTTTTATTCCATAAAAACAAACTGACATCTCTTATTACTATTATTATTATGTATAAATTTGGCCATTTCGAGGACTT-TTCTCCATAA-TTGAAATATATAA-TCAAACAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589176" ref_strand="+" ref_description="SGN-U589176 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|66765939|emb|CAG30525.1| (e_value=7e-117) calcium sensor calcineurin B-like protein [Lycopersicon esculentum]; (*ATH) AT5G24270.1 (e_value=1e-86)  Symbol: None | calcineurin B-like protein, putative / calcium sensor homolog (SOS3), identical to calcium sensor homolog (Arabidopsis thaliana) GI:3309575; similar to calcineurin B-like protein 8 (GI:15866276) (Arabidopsis thaliana) | chr5:8238784-8... ; (*SWP) sp|O81223|CNBL4_ARATH (e_value=1e-85) Calcineurin B-like protein 4 OS=Arabidopsis thaliana GN=CBL4; ">
      <seq>tgttgtaatatgttttctttcagagctatggtattttaggtccatacatattagtaactccagtttatttgtgagggaaaaaaatgtttatgtcataactatatctctttgcattgtcaaggctataagtaaattagttgcgaaaacagaatggtatagtgctgctgaagatataagatgcagattttgaagtgaagggcaattgctatatagagctagaagctttgatccatttgttcttctattcttgtttttatcttattttgagtaagcgataacattcgatgtcctggaggctgtttgacgaagcttcactagaatatatcgttagttaaccaacattttattgaatttggtcttttgatgggctgctttccctcaaaaatctgccgattcagtacccctggttacgaggatccaacactgctggctgctgagaccgcttttacggtgagtgaagttgaagcattatatgagctgttcaagaaaataagcagctctataattgatgatggactaattcacaaggaagaatttcagctggcaattttcaagaaccaaaacaggagagatctttttgcagacaggatttttgatctatttgatttcaagcgcaacggagtgattggatttggagaatttgtcagatcattgagtgtattccacccaaatgcaccagtagcagataaaattgcatttgcattccgattatatgatctaaggcagactggttatattgagagagaagagctgaaagagatggttttggcgctgctgaatgagtcagacttgattctttcggatgatatagttgaaatgattgtagataagacatttgatgaagcagataaaaagagtgacgggaagatagatgaagaagaatggaaggagtttgtttcaatgaatccctctcttctaaagaatatgacccttccatatctcaaggatataactttagcatttcctagctttgtgatgaactctgaggtggaagattcggaagtctagactcatgcttttagcatataacacgcgtagttgaaactcccacgtatcaggtaatctcttccgaactagtgatgcaacagaaatgcaaaagagtcgagattaatcggattttgcattgaaattttggaagttggctaccccagattgatgcagaaaatcagttcttttgccagctccaataggcattagcaagatgtactacttttaaagtatctagctagtctgttggagttagatatcaaggtagtattgaaagtcgaagttttgttcaaatgtaataaacaaacctgaatttcaaatttgaaatccaaattgccatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100260" stop="103780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100560" g_stop="100851" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100852" i_stop="101014" i_length="163">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.575" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101015" g_stop="101167" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="445" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101168" i_stop="101796" i_length="629">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101797" g_stop="101879" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="528" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102036" g_stop="102095" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="588" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102277" g_stop="102385" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="697" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102494" g_stop="102546" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="750" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102640" g_stop="102720" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="831" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="102817" g_stop="102929" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="944" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="103097" g_stop="103481" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1329" r_length="385" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U589176" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100560" e_stop="100851"/>
          <exon e_start="101015" e_stop="101167"/>
          <exon e_start="101797" e_stop="101879"/>
          <exon e_start="102036" e_stop="102095"/>
          <exon e_start="102277" e_stop="102385"/>
          <exon e_start="102494" e_stop="102546"/>
          <exon e_start="102640" e_stop="102720"/>
          <exon e_start="102817" e_stop="102929"/>
          <exon e_start="103097" e_stop="103481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTAATATGTTTTCTTTCAGAGCTATGGTATTTTAGGTCCATACATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTTGTGAGTATATATGCATATCCTTACCAAATTGGTATTTTGTTTCGATCAGTTGTCTTTATTTCTGTTTTTTTCCCCATCCTCAAGTTCTGGATCTTCAAAGTCATTCAGACACCAAGAGGGCCTATTGCTGAAGGAAAATACTAGAGGGTAATAAATTAATATGATTTTTTTTTCTACACAGCGAGGAGGTCTCAAACTCCTTTAGTGCATATGGATGATGTTAAAGAATTTTTCACATATGTGTTATAACTTATAATAGAAGAAAATGAAGGAACAACGGAATAGTATATGGTTGAGCTTCAGAATGAAAATTTCCTCCTCGATCTAGCTTAGATCATAGTACGAGTAACCAAACAACCAAAAATTTTCCATATCCTGAACCAATGAGATAGTTGAGGGTAGTTTTAGTACTCAACGAAAAGCCTTTAAATTGTCTCCTGACAAAATTTTATATTATGAATGTGACGACTGAACTAGTAGTTCAGTGTTCTGGCCTCCACTGCAGGCATGTAAGTAAACAAGTGCTATAAACATGTATAAAGTTATTTAATCGACAGCAAGTTATGTCTGCTTTTATTCAGTCCAAAACAGCAAATTGAGCATTCTGTTCAACGATTTATGTATTGCAGTTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAGGTATAATTTCTCTACTACTTGAATAACCGTTAAGCCATATATCGTTTATGTGTTCTTGGAGTTCCACATTTATAATTTACTAGTATTGAACTCTTTGATTACACGTAGAATATGTTATAGAGTTTCCTATTAACTTCTCTGGCATTCCATCATTAGGAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGGGTATGTTTTGTTGATTAACTTTTTCTTTGAAATGGATTCTCCATATTAATGATTAAGCATTACAACTCTTATGCTTTGGATCAATCGTTTCTGTTTCATTTGAAGAACGACCATTCGTCTGGCTTTAATCTGACTTATATTTGCTGAGTTTTTCTTTTCCACTCTTTCTGGAATCATGCAGATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCATGTAGGTGGCTTATATTCAACTATCTACAGCTTTAGAATTCTAAACATGATCTTTTTAACCTCTTCTGCAACATTATTAATGTGTACACACGGTGGATTCTTTCTGCAGTTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAGGTAGGTGTTGCAACCGTACTTATACTGATTTACTCTATGCTCCCTTGTCATGAACATTAGTCATATTCGCTGCTTGCTTGGTTTTTATTACAGCTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAGGTTGACTCCTCGACTCCATGATTGTCTGCTAATATGTTTGATTGTGTGCCTTTGTGTTATTCATATTGACCACCTAGTTTTATCTTGTTGCACCAGACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAAGTAAGTTATAACATCGAGCTGCATCAAGGCAGCTTGTGTGTTTGCGTTTATCTTTTCACCATTCCTCTGGAAATGTTCAAAAATCAAGCTCATTGGCCTTAAATCTACTATCAAATTTGTGTGCTATAAAGCAACTTTTGAGTGTTGTTTGTTACCTTTCATTATAGGGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACATGAATTTCAAATTTGAAATCCAAATTGCAATGA</genome_strand>
        <mrna_strand>TGTTGTAATATGTTTTCTTTCAGAGCTATGGTATTTTAGGTCCATACATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTG...................................................................................................................................................................GAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAG............................................................................................................................................................GAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGG.....................................................................................................................................................................................ATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT............................................................................................................TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG.............................................................................................CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG................................................................................................ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAA.......................................................................................................................................................................GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACCCCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACCTGAATTTCAAATTTGAAATCCAAATTGCCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584545" ref_strand="+" ref_description="SGN-U584545 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|66765939|emb|CAG30525.1| (e_value=5e-27) calcium sensor calcineurin B-like protein [Lycopersicon esculentum]; (*ATH) AT5G24270.1 (e_value=1e-17)  Symbol: None | calcineurin B-like protein, putative / calcium sensor homolog (SOS3), identical to calcium sensor homolog (Arabidopsis thaliana) GI:3309575; similar to calcineurin B-like protein 8 (GI:15866276) (Arabidopsis thaliana) | chr5:8238784-8... ; (*SWP) sp|O81223|CNBL4_ARATH (e_value=1e-16) Calcineurin B-like protein 4 OS=Arabidopsis thaliana GN=CBL4; ">
      <seq>gatattagtaactccagtttatttgtgagggaaaaaaatgtttatgtcataactatatctctttgcattgtcaaggctataagtaaattagttgcgaaaacagaatggtatagtgctgctgaagatataagatgcagattttgaagtgaagggcaattgctatatagagctagaagctttgatccatttgttcttctattcttgtttttatcttattttgagtaagcgataacattcgatgtcctggtgattaccttgaacctgataaagtagcacaaatcagtatttcttctttctgctatcttcctactgtttcattttgactttgacataatattattatgcatgactcgtttgctcaattccctgatgatgaggttgaagttgttctcttgtatttgattgtcaggaggctgtttgacgaagcttcactagaatatatcgttagttaaccaacattttattgaatttggtcttttgatgggctgctttccctcaaaaatctgccgattcagtacccctggttacgaggatccaacactgctggctgctgagaccgcttttacggtgagtgaagttgaagcattatatgagctgttcaagaaaataagcagctctataattgatgatggactaattcacaaggaaagatttcagctggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100307" stop="102356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100606" g_stop="101167" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101168" i_stop="101796" i_length="629">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101797" g_stop="101879" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="645" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102036" g_stop="102056" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="666" r_length="21" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U584545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100606" e_stop="101167"/>
          <exon e_start="101797" e_stop="101879"/>
          <exon e_start="102036" e_stop="102056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTTGTGAGTATATATGCATATCCTTACCAAATTGGTATTTTGTTTCGATCAGTTGTCTTTATTTCTGTTTTTTTCCCCATCCTCAAGTTCTGGATCTTCAAAGTCATTCAGACACCAAGAGGGCCTATTGCTGAAGGAAAATACTAGAGGGTAATAAATTAATATGATTTTTTTTTCTACACAGCGAGGAGGTCTCAAACTCCTTTAGTGCATATGGATGATGTTAAAGAATTTTTCACATATGTGTTATAACTTATAATAGAAGAAAATGAAGGAACAACGGAATAGTATATGGTTGAGCTTCAGAATGAAAATTTCCTCCTCGATCTAGCTTAGATCATAGTACGAGTAACCAAACAACCAAAAATTTTCCATATCCTGAACCAATGAGATAGTTGAGGGTAGTTTTAGTACTCAACGAAAAGCCTTTAAATTGTCTCCTGACAAAATTTTATATTATGAATGTGACGACTGAACTAGTAGTTCAGTGTTCTGGCCTCCACTGCAGGCATGTAAGTAAACAAGTGCTATAAACATGTATAAAGTTATTTAATCGACAGCAAGTTATGTCTGCTTTTATTCAGTCCAAAACAGCAAATTGAGCATTCTGTTCAACGATTTATGTATTGCAGTTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAGGTATAATTTCTCTACTACTTGAATAACCGTTAAGCCATATATCGTTTATGTGTTCTTGGAGTTCCACATTTATAATTTACTAGTATTGAACTCTTTGATTACACGTAGAATATGTTATAGAGTTTCCTATTAACTTCTCTGGCATTCCATCATTAGGAAGAATTTCAGCTGGCAATT</genome_strand>
        <mrna_strand>GATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAG............................................................................................................................................................GAAAGATTTCAGCTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584544" ref_strand="+" ref_description="SGN-U584544 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|66765939|emb|CAG30525.1| (e_value=1e-101) calcium sensor calcineurin B-like protein [Lycopersicon esculentum]; (*ATH) AT5G24270.1 (e_value=1e-79)  Symbol: None | calcineurin B-like protein, putative / calcium sensor homolog (SOS3), identical to calcium sensor homolog (Arabidopsis thaliana) GI:3309575; similar to calcineurin B-like protein 8 (GI:15866276) (Arabidopsis thaliana) | chr5:8238784-8... ; (*SWP) sp|Q3HRP0|CNBL7_ORYSJ (e_value=2e-80) Calcineurin B-like protein 7 OS=Oryza sativa subsp. japonica GN=CBL7; ">
      <seq>cgattcggcgcgaggcaacactggtggctgctgagaccgcttttacggtgagtgaagttgaagcattatatgagctgttcaagaaaacaaccacctctataattgatgatggactaattcacaaggaagaatttcagctggcaattttcaagaaccaaaacaggagagatctttgtgcagacaggatttttgatctatttgatttcaagcgcaacggagtgattggatttggagaatttgtcagatcattgagtgtattccacccaaatgcaccagtagcagataaaattgcatttgcattccgattatatgatctaaggcagactggttatattgagagagaagagctgaaagagatggttttggcgctgctgaatgagtcagacttgattctttcggatgatatagttgaaatgattgtagataagacatttgatgaagcagataaaaagagtgacgggaagatagatgaagaagaatggaaggagtttgtttcaatgaatccctctcttctaaagaatatgacccttccatatctcaaggatataactttagcatttcctagctttgtgatgaactctgaggtggaagattcggaagtctagactcatgcttttagcatataacacgcgtagttgaaactcccacgtatcaggtaatctcttccgaactagtgatgcaacagaaatgcaaaagagtcgagattaatcggattttgcattgaaattttggaagttggctacaccagattgatgcagaaaatcagttcttttgccagctccaataggcattagcaagatgtactacttttaaagtatctagctagtctgttggagttagatatcaaggtagtattgaaagtcgaagttttgttcaaatgtaataaacaaacctgaatttcaaatttgaaatccaaattgcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101484" stop="103780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101797" g_stop="101879" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="125" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.736" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102036" g_stop="102095" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="185" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102277" g_stop="102385" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="294" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102494" g_stop="102546" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="347" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102640" g_stop="102720" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="428" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102817" g_stop="102929" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="541" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103097" g_stop="103480" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="925" r_length="384" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U584544" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101797" e_stop="101879"/>
          <exon e_start="102036" e_stop="102095"/>
          <exon e_start="102277" e_stop="102385"/>
          <exon e_start="102494" e_stop="102546"/>
          <exon e_start="102640" e_stop="102720"/>
          <exon e_start="102817" e_stop="102929"/>
          <exon e_start="103097" e_stop="103480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAGGTATAATTTCTCTACTACTTGAATAACCGTTAAGCCATATATCGTTTATGTGTTCTTGGAGTTCCACATTTATAATTTACTAGTATTGAACTCTTTGATTACACGTAGAATATGTTATAGAGTTTCCTATTAACTTCTCTGGCATTCCATCATTAGGAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGGGTATGTTTTGTTGATTAACTTTTTCTTTGAAATGGATTCTCCATATTAATGATTAAGCATTACAACTCTTATGCTTTGGATCAATCGTTTCTGTTTCATTTGAAGAACGACCATTCGTCTGGCTTTAATCTGACTTATATTTGCTGAGTTTTTCTTTTCCACTCTTTCTGGAATCATGCAGATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCATGTAGGTGGCTTATATTCAACTATCTACAGCTTTAGAATTCTAAACATGATCTTTTTAACCTCTTCTGCAACATTATTAATGTGTACACACGGTGGATTCTTTCTGCAGTTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAGGTAGGTGTTGCAACCGTACTTATACTGATTTACTCTATGCTCCCTTGTCATGAACATTAGTCATATTCGCTGCTTGCTTGGTTTTTATTACAGCTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAGGTTGACTCCTCGACTCCATGATTGTCTGCTAATATGTTTGATTGTGTGCCTTTGTGTTATTCATATTGACCACCTAGTTTTATCTTGTTGCACCAGACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAAGTAAGTTATAACATCGAGCTGCATCAAGGCAGCTTGTGTGTTTGCGTTTATCTTTTCACCATTCCTCTGGAAATGTTCAAAAATCAAGCTCATTGGCCTTAAATCTACTATCAAATTTGTGTGCTATAAAGCAACTTTTGAGTGTTGTTTGTTACCTTTCATTATAGGGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACATGAATTTCAAATTTGAAATCCAAATTGCAATG</genome_strand>
        <mrna_strand>TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAACAACCACCTCTATAATTGATGATGGACTAATTCACAAG............................................................................................................................................................GAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTGTGCAGACAGG.....................................................................................................................................................................................ATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT............................................................................................................TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG.............................................................................................CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG................................................................................................ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAA.......................................................................................................................................................................GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACCTGAATTTCAAATTTGAAATCCAAATTGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599800" ref_strand="+" ref_description="SGN-U599800 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147835769|emb|CAN75198.1| (e_value=3e-51) hypothetical; (*ATH) AT5G24260.1 (e_value=6e-40)  Symbol: None | prolyl oligopeptidase family protein, similar to dipeptidyl peptidase IV (Stenotrophomonas maltophilia) GI:1753197; contains Pfam profiles PF00326: prolyl oligopeptidase family, PF00930: Dipeptidyl peptidase IV (DPP IV) N-terminal reg... ; ">
      <seq>ggacccaacaatctccgattctatttttcagaaaaaaataaaaatttctaaatagaaactaaaacccaaatttatgaatccaaatcttgcccactgaatctaaaaaagtgccgataggatttccactttcagaattgtgagattgattggatcaatgtgtgaactgtggatgacttaatctgtaatgcaatcaataaattcgggtgaaaagaagtgtttgaaacgttcgagatcattttcaagtgagatgccagggactgatacaaatgttgcaaagcctttagaggattgcgtcctgtttcctgttgaagatatagtgcagtatcctctacctggttgtggttcaccaacgtctataggttttagtccagatgatagtttagttacatatttatatagtccaaaccaaaatctatgtagaaaggtttttgtattggatctcaagaatggaaggcatgaattgttctttagtccaccagatggtggactcgatgagaataacttatctgctgaagagaagcttanaagggagaggtcaagggaacgtggtttaggggtaacacgatatgagtgggttaaggcaagcgccagacggaaagtcattatggtaccactacctgctggagtatacttgaaggatcanaatgcanaaccagaacttaanatagcaagtacatcctcctcgccagtcttggntccacatatttcacctganggtaccnnnttgcatatgtganana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="104629" stop="107165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104929" g_stop="105060" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105061" i_stop="105596" i_length="536">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105597" g_stop="106089" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="625" r_length="493" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106090" i_stop="106769" i_length="680">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106770" g_stop="106885" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="740" r_length="115" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U599800" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104929" e_stop="105060"/>
          <exon e_start="105597" e_stop="106089"/>
          <exon e_start="106770" e_stop="106885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCAACAATCTCCGATTCTATTTTTCAGAAAAAAATAAAAATTTCTAAATAGAAACTAAAACCCAAATTTATGAATCCAAATCTTGCCCACTGAATCTAAAAAAGTGCCGATAGGATTTCCACTTTCAGGCATGTTCATTCAATCTCTTAATCACTTATTACAGATTGGGATTTATCAATCCCCTTTAGTTTTTTGTTTTTTTGTTTTTGCATTTTTTCTATGCTTTTTGATTGTTTTATAATCTTTGTTTACTCTATTTGAAGTGAAGAGTTTGGTGGTAGTGTAAAGATTGGAACTTTATTTGGTTTTGTTTAGAATCTTGAAGTAAAGAGTTTGATGGTAGTATAAAGATTGCAGCTTTATTTGGTTTTGTCTTAGAATCTTGGTTTATTTGGTAATTGGACTAGTGGGTGTTTTCTGTTTTCTTGTTTTAGTTTTTTGTTTGGTTTGTTTTCTTGTTTTAGTTCTGTATTTGGTTTATTTTAATTGTGGGTGTTTTCTGTTTTCTTGTTTTAGTTCATTGTTTGGTTTATTTTACTAGTGGGTGTTTTCTATGTTCTTGTTTTAGTTCTTTTGGTTTATTTTCTTGTTGTTAGAACGTATAAGAAGTACTTTGGCGAAGAGTTGGTAGCATTAGATTGAATTTGTATCCTGTTTTGTGCAGAATTGTGAGATTGATTGGATCAATGTGTGAACTGTGGATGACTTAATCTGTAATGCAATCAATAAATTCGGGTGAAAAGAAGTGTTTGAAACGTTCGAGATCATTTTCAAGTGAGATGCCAGGGACTGATACAAATGTTGCAAAGCCTTTAGAGGATTGCGTCCTGTTTCCTGTTGAAGATATAGTGCAGTATCCTCTACCTGGTTGTGGTTCACCAACGTCTATAGGTTTTAGTCCAGATGATAGTTTAGTTACATATTTATATAGTCCAAACCAAAATCTATGTAGAAAGGTTTTTGTATTGGATCTCAAGAATGGAAGGCATGAATTGTTCTTTAGTCCACCAGATGGTGGACTCGATGAGAATAACTTATCTGCTGAAGAGAAGCTTAGAAGGGAGAGGTCAAGGGAACGTGGTTTAGGGGTAACACGATATGAGTGGGTTAAGGCAAGCGCCAGACGGAAAGTCATTATGGTACCACTACCTGCTGGAGTAAGTTATCTTTTCTCATGTAAGTTTTAGTGCTCAATTTCTATTTAATGCTATCCCTATTGTTCAACTGAACTATAATCTCCCAAACTATTTGTTGATGCAATTGGTAATTAAAGAATAAAAAATAGCTGTTGTCTTCCAGTTGTGAAATTCTCTCAATTTTTTCTATTCCGAAATGTTACAATGTGTATTCTGCACTGGGCCGACCCCCTGATTCTCTTTTTTTTTCTGGAAAAAACTAATATACATGCTCAACCTCACTGCTAACATGTATTTTACAGGAGTAATCATTTAGTGGTAAAGGCCTTCTTTTGGGTTAAAAAAGAATTTAAATTGTGAAAAATTAGAACAGTCTTATCTGAGATAGTGATAGTTTTTCTGTCCATATTAGTCCGCTGGATAGATCGTCCTTCTTTTGGCCTTTGTAGTCCTCAAATATTTGAGTTTTGATTAACACATTCTTATTCTCTGCGCTCTGTTCCATCTGCAAAAAGAAATCCTTCACAGGACTGCTTGGGAGATAATAGTAATAATTTCTTTTCATTTTTAAATTCGGTTCTTTACCTGAAATCATGTATATATCTGTACCATATCATTTTTTGTGGGGGTCCAAACTGATTTTTTGTGTTTGTTTCTCCAATTATCAGATCTAATCAGAGTTCACTTTATACGTAAAACAGGTATACTTGAAGGATCAGAATGCAGAACCAGAACTTAAGATAGCAAGTACATCCTCCTCGCCAGTCTTGGATCCACATATTTCACCTGATGGTACCAGGCTTGCATATGTGAGAGA</genome_strand>
        <mrna_strand>GGACCCAACAATCTCCGATTCTATTTTTCAGAAAAAAATAAAAATTTCTAAATAGAAACTAAAACCCAAATTTATGAATCCAAATCTTGCCCACTGAATCTAAAAAAGTGCCGATAGGATTTCCACTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGAGATTGATTGGATCAATGTGTGAACTGTGGATGACTTAATCTGTAATGCAATCAATAAATTCGGGTGAAAAGAAGTGTTTGAAACGTTCGAGATCATTTTCAAGTGAGATGCCAGGGACTGATACAAATGTTGCAAAGCCTTTAGAGGATTGCGTCCTGTTTCCTGTTGAAGATATAGTGCAGTATCCTCTACCTGGTTGTGGTTCACCAACGTCTATAGGTTTTAGTCCAGATGATAGTTTAGTTACATATTTATATAGTCCAAACCAAAATCTATGTAGAAAGGTTTTTGTATTGGATCTCAAGAATGGAAGGCATGAATTGTTCTTTAGTCCACCAGATGGTGGACTCGATGAGAATAACTTATCTGCTGAAGAGAAGCTTANAAGGGAGAGGTCAAGGGAACGTGGTTTAGGGGTAACACGATATGAGTGGGTTAAGGCAAGCGCCAGACGGAAAGTCATTATGGTACCACTACCTGCTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTTGAAGGATCANAATGCANAACCAGAACTTAANATAGCAAGTACATCCTCCTCGCCAGTCTTGGNTCCACATATTTCACCTGANGGTACC-NNNTTGCATATGTGANANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570600" ref_strand="+" ref_description="SGN-U570600 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157355279|emb|CAO48655.1| (e_value=2e-125) unnamed; (*ATH) AT5G24260.1 (e_value=2e-106)  Symbol: None | prolyl oligopeptidase family protein, similar to dipeptidyl peptidase IV (Stenotrophomonas maltophilia) GI:1753197; contains Pfam profiles PF00326: prolyl oligopeptidase family, PF00930: Dipeptidyl peptidase IV (DPP IV) N-terminal reg... ; (*SWP) sp|Q86TI2|DPP9_HUMAN (e_value=1e-13) Dipeptidyl peptidase 9 OS=Homo sapiens GN=DPP9; ">
      <seq>cgttaacggaaaaatgggtactggtggtcattggacagcaaatatatagcattcacacaggttgattcatctgggatacctttattcagaattatgcatcaaggtaaaagttccgttggtcctgaggcacaggaagaccacgcttacccttttgctggagggccaaatgtcaaaattcgcctgggagtggtttcagctaacgggggtcaaataacatggatggatcttctttgtggtgtaaaggacaaagcaaatgaggacgaggaatatttggcgagagtgaattggatgcatggaaatattctgactgcacaagtcttgagtcgatcacaatccaaactgaaaatcattaaatttgatatcaagacagggaaaaggagtgtaatattggttgaagaacatgatacatgggtcaatcttcacgattgttttatacctttggacaaaggactcaacagaactaatggtgcatttatttgggccagcgagaaaacagggttcaaacatttgtatcttcatgacacaaatggagtctgtttgggaccgataactcaaggtgattggttggttgaacaaattgcgggtgtaaatgaagttactggccttgtatattttacaggaactttggatgggcctatggaatctcacctttactgtgctaaattgttccccgaagctaacggtccattgcagtcccctttgagattgactaatggacatggaaaacatgtcgttgtgcttgatcgtcaaatgcaaagattcatagatatccatgattccttggtctcacctcccagaatttcactctgctccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="109322" stop="110735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109618" g_stop="110435" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="818" r_length="818" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U570600" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109618" e_stop="110435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACGGAAAAATGGGTACTGGTGGTCATTGGACAGCAAATATATAGCATTCACACAGGTTGATTCATCTGGGATACCTTTATTCAGAATTATGCATCAAGGTAAAAGTTCCGTTGGTCCTGAGGCACAGGAAGACCACGCTTACCCTTTTGCTGGAGGGCCAAATGTCAAAATTCGCCTGGGAGTGGTTTCAGCTAACGGGGGTCAAATAACATGGATGGATCTTCTTTGTGGTGTAAAGGACAAAGCAAATGAGGACGAGGAATATTTGGCGAGAGTGAATTGGATGCATGGAAATATTCTGACTGCACAAGTCTTGAGTCGATCACAATCCAAACTGAAAATCATTAAATTTGATATCAAGACAGGGAAAAGGAGTGTAATATTGGTTGAAGAACATGATACATGGGTCAATCTTCACGATTGTTTTATACCTTTGGACAAAGGACTCAACAGAACTAATGGTGCATTTATTTGGGCCAGCGAGAAAACAGGGTTCAAACATTTGTATCTTCATGACACAAATGGAGTCTGTTTGGGACCGATAACTCAAGGTGATTGGTTGGTTGAACAAATTGCGGGTGTAAATGAAGTTACTGGCCTTGTATATTTTACAGGAACTTTGGATGGGCCTATGGAATCTCACCTTTACTGTGCTAAATTGTTCCCCGAAGCTAACGGTCCATTGCAGTCCCCTTTGAGATTGACTAATGGACATGGAAAACATGTCGTTGTGCTTGATCGTCAAATGCAAAGATTCATAGATATCCATGATTCCTTGGTCTCACCTCCCAGAATTTCACTCTGCTCCTTGCA</genome_strand>
        <mrna_strand>CGTTAACGGAAAAATGGGTACTGGTGGTCATTGGACAGCAAATATATAGCATTCACACAGGTTGATTCATCTGGGATACCTTTATTCAGAATTATGCATCAAGGTAAAAGTTCCGTTGGTCCTGAGGCACAGGAAGACCACGCTTACCCTTTTGCTGGAGGGCCAAATGTCAAAATTCGCCTGGGAGTGGTTTCAGCTAACGGGGGTCAAATAACATGGATGGATCTTCTTTGTGGTGTAAAGGACAAAGCAAATGAGGACGAGGAATATTTGGCGAGAGTGAATTGGATGCATGGAAATATTCTGACTGCACAAGTCTTGAGTCGATCACAATCCAAACTGAAAATCATTAAATTTGATATCAAGACAGGGAAAAGGAGTGTAATATTGGTTGAAGAACATGATACATGGGTCAATCTTCACGATTGTTTTATACCTTTGGACAAAGGACTCAACAGAACTAATGGTGCATTTATTTGGGCCAGCGAGAAAACAGGGTTCAAACATTTGTATCTTCATGACACAAATGGAGTCTGTTTGGGACCGATAACTCAAGGTGATTGGTTGGTTGAACAAATTGCGGGTGTAAATGAAGTTACTGGCCTTGTATATTTTACAGGAACTTTGGATGGGCCTATGGAATCTCACCTTTACTGTGCTAAATTGTTCCCCGAAGCTAACGGTCCATTGCAGTCCCCTTTGAGATTGACTAATGGACATGGAAAACATGTCGTTGTGCTTGATCGTCAAATGCAAAGATTCATAGATATCCATGATTCCTTGGTCTCACCTCCCAGAATTTCACTCTGCTCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568544" ref_strand="+" ref_description="SGN-U568544 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157355279|emb|CAO48655.1| (e_value=1e-51) unnamed; (*ATH) AT5G24260.1 (e_value=1e-44)  Symbol: None | prolyl oligopeptidase family protein, similar to dipeptidyl peptidase IV (Stenotrophomonas maltophilia) GI:1753197; contains Pfam profiles PF00326: prolyl oligopeptidase family, PF00930: Dipeptidyl peptidase IV (DPP IV) N-terminal reg... ; (*SWP) sp|Q8BVG4|DPP9_MOUSE (e_value=3e-22) Dipeptidyl peptidase 9 OS=Mus musculus GN=Dpp9; ">
      <seq>cacgaggggtgctcctgttacatcatgggacggatatgatacattttacacagaaaagtatatgggcctaccatctgaaaatccatcagtctatcaagagggctccgtaatgcaccacgttgacaagatcaaagggaagcttttactcgtgcatggcatgatcgatgaaaatgtgcattttaggcacactgctaggcttattaacgcacttgtggcagccagaaagccttacgagttgttaatattcccagatgaacgtcacatgcctcggagactgagagatcgtatatacatggaggagagaatttgggaattcatcgagagaaacttgtgaatggcctactcattgttctagcaatcgcttatatgccctcggctctcgggtagagaaaattttggggctcatttccaggtcaacacagcatggttcacttgattatagaagaaaaatttgtactattctcaggctaataaaagttgtttgtgttaacttaatctgtgttatagctgccatgtaccattagtaccagatgtacaaaaataatgcaacactccatttcctgggaagaaattaatttgtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110933" stop="112110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111226" g_stop="111810" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-U568544" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111226" e_stop="111810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTGGTGCTCCTGTTACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACACAGCATGGTTCACTTGATTATAGAAGAAAAATTTGTACTATTCTCAGGCTAATAAAAGTTGTTTGTGTTAACTTAATCTGTGTTATAGCTGCCATGTACCATTAGTACCAGATGTACAAAAATAATGCAACACTCCATTTCCTGGGAAGAAATTAATTTGTTTTTC</genome_strand>
        <mrna_strand>CACGAGGGGTGCTCCTGTTACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACACAGCATGGTTCACTTGATTATAGAAGAAAAATTTGTACTATTCTCAGGCTAATAAAAGTTGTTTGTGTTAACTTAATCTGTGTTATAGCTGCCATGTACCATTAGTACCAGATGTACAAAAATAATGCAACACTCCATTTCCTGGGAAGAAATTAATTTGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572035" ref_strand="+" ref_description="SGN-U572035 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157355280|emb|CAO48656.1| (e_value=4e-36) unnamed; (*ATH) AT2G46500.2 (e_value=2e-30) | Symbol: None | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin domain | chr2:19093633-19096005 REVERSE | Aliases: None; ">
      <seq>gtggctgttttatttttatatcaagtcatattttttccacaataacaaaaagctaattatttcaagttaaaagagcccctacaaacaccacattaacatcccaccctttcccacaatttagtttcaaccaggtaactattaatatatgcacaaaatttacatcttcatacatacatatttacttaatcaggtcaccaaggcgtcgatccatgatgaccgaaacagactgcatgaatgctgcctcacttgttcctgggagcacactctcttcagcttcttcaacaatctgctcaatcatagactccttcttcagtgcttccctgcacatgattcctccaattgcacaaggggtgagacctctctctgcacctttcttcagaagcatagtagagatacgaaatacacgtgcacaagcaagggacatggtccaaccatgaaacttcagaagctcaatgtctttctcagcatcaagagacttaataagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="136417" stop="135346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136111" g_stop="135646" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="481" r_length="463" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-U572035" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136111" e_stop="135646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAGTCATACTTTTTTCCACAATAACAAAAAGCTAAATATTTCAAGTTAAAAGAGCCCCCCTACAAACACCACATTAACATCCCACCCTTTCCCAGAATTTAGTTTCAACCAGGTAACTATTAATATATGCACAAAATTTACATCTTCATACATACATATTTACTTAATCAGGTCACCAAGGCGTCGATCCATGATGACCGAAACAGACTGCAAGAATGCTGCCTCACTTGTTCCTGGGAGCACACTCTCTTCAGCTTCTTCAACAATCTGCTCAATCATAGACTCCTTCTTCAGTGCTTCCCTGCACATGATTCCTCCAATTGCACAAGGGGTGAGACCTCTCTCTGCACCTTTCTTCAGAAGCATAGTAGAGATACGAAATACACGTGCACAAGCAAGGGACATGGTCCAACCATGAAACTTCAGAAGCTCAATATCTTTCTCAGCATCAAGAGAGTTTAT</genome_strand>
        <mrna_strand>TATCAAGTCATA-TTTTTTCCACAATAACAAAAAGCTAATTATTTCAAGTTAAAAGAGC--CCCTACAAACACCACATTAACATCCCACCCTTTCCCACAATTTAGTTTCAACCAGGTAACTATTAATATATGCACAAAATTTACATCTTCATACATACATATTTACTTAATCAGGTCACCAAGGCGTCGATCCATGATGACCGAAACAGACTGCATGAATGCTGCCTCACTTGTTCCTGGGAGCACACTCTCTTCAGCTTCTTCAACAATCTGCTCAATCATAGACTCCTTCTTCAGTGCTTCCCTGCACATGATTCCTCCAATTGCACAAGGGGTGAGACCTCTCTCTGCACCTTTCTTCAGAAGCATAGTAGAGATACGAAATACACGTGCACAAGCAAGGGACATGGTCCAACCATGAAACTTCAGAAGCTCAATGTCTTTCTCAGCATCAAGAGACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>26</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5812" PGL_stop="20746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5812" e_stop="5902"/>
            <exon e_start="10933" e_stop="11070"/>
            <exon e_start="11306" e_stop="11420"/>
            <exon e_start="11832" e_stop="12069"/>
            <exon e_start="12887" e_stop="13078"/>
            <exon e_start="13176" e_stop="13496"/>
            <exon e_start="14287" e_stop="14509"/>
            <exon e_start="18300" e_stop="18318"/>
            <exon e_start="20114" e_stop="20126"/>
            <exon e_start="20313" e_stop="20534"/>
            <exon e_start="20604" e_stop="20746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.890" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.981" e_score="0.971"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.286" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.569" e_score="0.579"/>
          <exon-intron don_prob="0.970" acc_prob="0.992" e_score="0.385"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.833"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5812" e_stop="5902" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.890" acc_prob="0.974">
            <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="10933" e_stop="11070" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.981">
            <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11306" e_stop="11420" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11832" e_stop="12069" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.927">
            <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="12887" e_stop="13078" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13176" e_stop="13496" e_length="321"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.928">
            <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14287" e_stop="14509" e_length="223"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.286">
            <gDNA_intron_boundary i_start="14510" i_stop="18299" i_length="3790"/>
          </intron>
          <exon e_serial="8" e_score="0.579">
            <gDNA_exon_boundary e_start="18300" e_stop="18318" e_length="19"/>
          </exon>
          <intron i_serial="8" don_prob="0.955" acc_prob="0.569">
            <gDNA_intron_boundary i_start="18319" i_stop="20113" i_length="1795"/>
          </intron>
          <exon e_serial="9" e_score="0.385">
            <gDNA_exon_boundary e_start="20114" e_stop="20126" e_length="13"/>
          </exon>
          <intron i_serial="9" don_prob="0.970" acc_prob="0.992">
            <gDNA_intron_boundary i_start="20127" i_stop="20312" i_length="186"/>
          </intron>
          <exon e_serial="10" e_score="0.833">
            <gDNA_exon_boundary e_start="20313" e_stop="20534" e_length="222"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20535" i_stop="20603" i_length="69"/>
          </intron>
          <exon e_serial="11" e_score="0.979">
            <gDNA_exon_boundary e_start="20604" e_stop="20746" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5812" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13496"/>
              <exon start="14287" stop="14509"/>
              <exon start="18300" stop="18318"/>
              <exon start="20114" stop="20126"/>
              <exon start="20313" stop="20534"/>
              <exon start="20604" stop="20746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAG : CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG : AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG : TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG : ATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAG : ACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAG : GGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCG : CCATACATTTTCCTCTTGT : AGATGCAAGGGAG : CCTCAGTTTCCAGCAGGAGGGGAGCGGTCAACTCCGATATCATGATTGTGTGGGAACTTTGAGACCATTTATCAGTTGATTTGAAGCTTCAGCTTTTATTTTATATTCTGGATAATGACCTCTTGGATAATATGTGCAGTTTGGGTTAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATAGATGAGTGGTTGTTC : GCTTAACGTTAAGGTTGATCTGTATTGCAACTTGCATCCCCCCTCTTATTAGCTATTGATATCTAGTATCAGTTGACAAACTGGCTATGCTTATGATTGCGGGTTTGAGATGAATATGAATGTAGAAAAGTTAGGATTCATAT</gDNA_template>
            <first_frame> P  *  R  R  Y  S  H  S  S  R  N  L  R  R  P  N  N  G  R  R  P  T  E  N  V  H  R  Q  *  E   : A  A  N  Q  S  *  G  I  R  C  A  *  S  I  A  Q  S  S  R  P  Q  *  F  P  H  F  C  C  Q  S  *  S  N  T  K  W  I  C  *  G  S  H  L  Q  F  Q   : E  T  *  G  C  N  A  G  V  W  S  *  N  *  A  P  *  R  *  C  Q  I  L  E  G  C  E  E  R  V  G  *  F  N  F  G  Y  T  S :   C  S  W  H  D  *  I  S  K  *  N  W  F  *  K  *  G  I  F  Q  W  A  E  *  G  G  D  H  *  T  N  L  K  F  *  *  I  C  S  C  H  L  C  P  A  A  K  A  *  W  N  S  D  Y  T  D  S  I  Y  E  G  H  N  R  N  C  C  F  A  W  E  G  R  *  *  *  S  Q  Q  :  I  S  L  G  L  S  W  A  R  N  H  V  R  S  C  F  Q  D  A  *  W  S  *  S  T  G  N  I  *  *  G  R  S  Y  K  *  K  F  W  F  S  W  T  W  S  F  N  W  E  T  L  G  *  Q  I  S  R  N  L  S  *  G  L  K  :  T  I  H  W  *  I  Y  C  *  *  P  S  E  E  A  *  H  K  E  A  K  I  P  Q  *  G  N  S  S  W  F  S  W  F  C  C  Q  Y  D  Q  Y  R  H  C  E  L  I  L  C  H  K  H  W  L  W  P  E  R  D  P  L  L  *  T  L  L  T  F  A  S  I  Q  N  K  G  *  H  A  A  G  T  T  S  Y  S  *  W  S  H  I  V  G  W  W  D  H  K  E  *  W  Y  I  L  P  R  R  E  :  G  S  Q  D  Q  I  S  N  E  F  W  K  A  E  C  T  *  K  L  L  *  D  *  D  P  V  E  G  A  A  V  E  K  G  K  I  C  G  *  F  T  E  R  T  N  I  T  G  P  C  K  V  Q  L  *  N  K  E  T  R  L  C  Q  V  S  C  T  K  L  I  L  C  F  S   : A  I  H  F  P  L  V :   D  A  R  E  :  P  Q  F  P  A  G  G  E  R  S  T  P  I  S  *  L  C  G  N  F  E  T  I  Y  Q  L  I  *  S  F  S  F  Y  F  I  F  W  I  M  T  S  W  I  I  C  A  V  W  V  N  F  S  I  R  C  R  L  M  P  V  *  F  R  F  R  *  I  F  I  D  E  W  L  F  :  A  *  R  *  G  *  S  V  L  Q  L  A  S  P  L  L  L  A  I  D  I  *  Y  Q  L  T  N  W  L  C  L  *  L  R  V  *  D  E  Y  E  C  R  K  V  R  I  H   </first_frame>
            <second_frame>  L  N  G  D  T  L  T  L  L  G  I  S  G  D  P  T  M  D  G  G  Q  R  R  M  S  I  D  N  E  K  :  L  P  I  S  P  K  A  L  G  V  H  D  P  S  L  N  Q  V  G  H  S  N  S  P  T  F  A  A  N  R  D  P  I  Q  N  G  S  A  E  A  V  I  C  N  S  K  :  K  L  E  D  A  M  Q  E  F  G  L  K  I  K  H  H  E  D  N  V  K  Y  L  K  A  V  K  N  E  L  D  D  S  I  L  D  I  R   : V  A  L  G  T  T  K  S  A  S  E  T  G  S  E  N  K  E  S  S  N  G  Q  N  E  E  E  T  I  E  Q  I  L  S  F  D  K  S  A  A  A  I  C  V  Q  L  Q  K  R  S  G  T  Q  I  T  Q  I  P  F  M  K  D  I  I  G  I  V  A  L  L  G  K  V  D  D  D  N  L  S  R :   S  L  S  D  Y  L  G  L  E  T  M  L  G  V  V  F  K  T  R  D  G  V  K  A  L  E  T  Y  D  R  E  G  R  I  N  K  S  S  G  F  H  G  L  G  A  S  I  G  R  P  L  D  D  R  Y  L  V  I  C  L  E  D  L  R :   P  Y  T  G  K  F  I  A  D  D  P  Q  R  R  L  D  I  K  K  P  R  Y  L  N  E  E  T  P  P  G  F  L  G  F  A  V  N  M  I  N  I  D  T  A  N  L  Y  C  V  T  S  T  G  Y  G  L  R  E  T  L  F  Y  R  L  F  S  R  L  Q  V  Y  K  T  R  A  D  M  L  Q  A  L  P  L  I  A  D  G  A  I  S  L  D  G  G  I  I  K  S  S  G  I  S  S  L  G  E  R :   E  V  K  I  K  F  P  M  S  S  G  R  P  N  V  P  E  N  Y  Y  E  T  E  I  R  L  K  E  L  Q  W  K  R  A  R  F  V  D  D  L  Q  R  E  Q  T  L  L  D  H  A  K  F  N  F  E  I  K  K  Q  D  F  V  K  F  L  A  R  S  S  S  Y  A  S  A  :  P  Y  I  F  L  L   : *  M  Q  G  S :   L  S  F  Q  Q  E  G  S  G  Q  L  R  Y  H  D  C  V  G  T  L  R  P  F  I  S  *  F  E  A  S  A  F  I  L  Y  S  G  *  *  P  L  G  *  Y  V  Q  F  G  L  I  S  A  L  G  A  G  L  C  Q  S  D  S  G  L  G  E  F  S  *  M  S  G  C  S :   L  N  V  K  V  D  L  Y  C  N  L  H  P  P  S  Y  *  L  L  I  S  S  I  S  *  Q  T  G  Y  A  Y  D  C  G  F  E  M  N  M  N  V  E  K  L  G  F  I  </second_frame>
            <third_frame>   L  T  A  I  L  S  L  F  S  E  S  P  A  T  Q  Q  W  T  A  A  N  G  E  C  P  *  T  M  R  S :   C  Q  S  V  L  R  H  *  V  C  M  I  H  R  S  I  K  *  A  T  V  I  P  P  L  L  L  P  I  V  I  Q  Y  K  M  D  L  L  R  Q  S  S  A  I  P  R :   N  L  R  M  Q  C  R  S  L  V  L  K  L  S  T  M  K  I  M  S  N  T  *  R  L  *  R  T  S  W  M  I  Q  F  W  I  Y  E  :  L  L  L  A  R  L  N  Q  Q  V  K  L  V  L  K  I  R  N  L  P  M  G  R  M  R  R  R  P  L  N  K  S  *  V  L  I  N  L  Q  L  P  S  V  S  S  C  K  S  V  V  E  L  R  L  H  R  F  H  L  *  R  T  *  *  E  L  L  L  C  L  G  R  S  M  M  I  I  S  A   : D  L  S  R  I  I  L  G  S  K  P  C  *  E  L  F  S  R  R  V  M  E  L  K  H  W  K  H  M  I  G  K  V  V  *  I  K  V  L  V  F  M  D  L  E  L  Q  L  G  D  P  W  M  T  D  I  S  *  S  V  L  R  T  *   : D  H  T  L  V  N  L  L  L  M  T  L  R  G  G  L  T  *  R  S  Q  D  T  S  M  R  K  L  L  L  V  F  L  V  L  L  S  I  *  S  I  S  T  L  R  T  Y  I  V  S  Q  A  L  V  M  A  *  E  R  P  S  S  I  D  S  S  H  V  C  K  Y  T  K  Q  G  L  T  C  C  R  H  Y  L  L  *  L  M  E  P  Y  R  W  M  V  G  S  *  R  V  V  V  Y  P  P  *  A  R   : G  K  S  R  S  N  F  Q  *  V  L  E  G  R  M  Y  L  K  T  I  M  R  L  R  S  G  *  R  S  C  S  G  K  G  Q  D  L  W  M  I  Y  R  E  N  K  H  Y  W  T  M  Q  S  S  T  L  K  *  R  N  K  T  L  S  S  F  L  H  E  A  H  P  M  L  Q  R :   H  T  F  S  S  C  :  R  C  K  G   : A  S  V  S  S  R  R  G  A  V  N  S  D  I  M  I  V  W  E  L  *  D  H  L  S  V  D  L  K  L  Q  L  L  F  Y  I  L  D  N  D  L  L  D  N  M  C  S  L  G  *  F  Q  H  *  V  Q  A  Y  A  S  L  I  Q  V  *  V  N  F  H  R  *  V  V  V   : R  L  T  L  R  L  I  C  I  A  T  C  I  P  P  L  I  S  Y  *  Y  L  V  S  V  D  K  L  A  M  L  M  I  A  G  L  R  *  I  *  M  *  K  S  *  D  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5813" stop="5902"/>
                    <exon start="10933" stop="11070"/>
                    <exon start="11306" stop="11420"/>
                    <exon start="11832" stop="12069"/>
                    <exon start="12887" stop="13078"/>
                    <exon start="13176" stop="13496"/>
                    <exon start="14287" stop="14509"/>
                    <exon start="18300" stop="18318"/>
                    <exon start="20114" stop="20115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1335</number_coding_nucleotides>
                  <number_encoded_amino_acids>445</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNGDTLTLLGISGDPTMDGGQRRMSIDNEKLPISPKALGVHDPSLNQVGHSNSPTFAANRDPIQNGSAEAVICNSKKLEDAMQEFGLKIKHHEDNVKYLKAVKNELDDSILDIRVALGTTKSASETGSENKESSNGQNEEETIEQILSFDKSAAAICVQLQKRSGTQITQIPFMKDIIGIVALLGKVDDDNLSRSLSDYLGLETMLGVVFKTRDGVKALETYDREGRINKSSGFHGLGASIGRPLDDRYLVICLEDLRPYTGKFIADDPQRRLDIKKPRYLNEETPPGFLGFAVNMINIDTANLYCVTSTGYGLRETLFYRLFSRLQVYKTRADMLQALPLIADGAISLDGGIIKSSGISSLGEREVKIKFPMSSGRPNVPENYYETEIRLKELQWKRARFVDDLQREQTLLDHAKFNFEIKKQDFVKFLARSSSYASAPYIFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="46257" PGL_stop="47681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46453" e_stop="47034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="46453" e_stop="47034" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46453" stop="47034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46616" stop="46817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGGTCTCCAATATAATGATTTTTTGTTGCGCTATCTATGCACATACACCATGTATAATGTTTTATGAGTTATTATTCATCCATAGTGACATTAGACGTAAGTTGTTTCTTCATGGAGTAAACAGTGGGATTGATTGTTCAAATATCTTTCTGTTGAAGTCAATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAAGTTTCCAGAAGTTCTTTTATTAGTTTGAAATGTAGTTTCTGTTGAACATATTCTTTGTCTTTATTTGTTTATTCTGGAAGAAAGGATGTAAGCTTACACAGAATGTTTACTATTTCCAGAGCTCAGTTTTGTCATGACACAATAGCTGTAATGATGCATGGTTCCTTATTTGGCAGTGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCT</gDNA_template>
            <first_frame> Y  G  L  Q  Y  N  D  F  L  L  R  Y  L  C  T  Y  T  M  Y  N  V  L  *  V  I  I  H  P  *  *  H  *  T  *  V  V  S  S  W  S  K  Q  W  D  *  L  F  K  Y  L  S  V  E  V  N  F  V  S  Y  L  L  F  N  S  A  A  I  A  Y  T  I  C  F  M  K  L  H  C  S  F  L  L  I  M  Y  C  L  L  L  *  H  P  R  I  S  L  T  F  *  F  V  N  T  N  F  L  W  L  L  H  K  E  R  C  V  C  G  R  G  S  S  K  F  P  E  V  L  L  L  V  *  N  V  V  S  V  E  H  I  L  C  L  Y  L  F  I  L  E  E  R  M  *  A  Y  T  E  C  L  L  F  P  E  L  S  F  V  M  T  Q  *  L  *  *  C  M  V  P  Y  L  A  V  I  I  A  T  H  P  L  S  I  S  I  E  A </first_frame>
            <second_frame>  M  V  S  N  I  M  I  F  C  C  A  I  Y  A  H  T  P  C  I  M  F  Y  E  L  L  F  I  H  S  D  I  R  R  K  L  F  L  H  G  V  N  S  G  I  D  C  S  N  I  F  L  L  K  S  I  L  F  L  I  C  S  L  T  Q  Q  L  L  L  T  R  S  V  S  *  S  C  I  V  H  S  S  *  *  C  I  A  F  Y  F  D  T  Q  G  F  L  *  P  F  D  L  *  T  L  I  F  Y  G  Y  Y  I  K  K  G  V  S  V  D  A  V  A  Q  S  F  Q  K  F  F  Y  *  F  E  M  *  F  L  L  N  I  F  F  V  F  I  C  L  F  W  K  K  G  C  K  L  T  Q  N  V  Y  Y  F  Q  S  S  V  L  S  *  H  N  S  C  N  D  A  W  F  L  I  W  Q  *  *  L  Q  H  I  H  C  Q  F  P  *  K   </second_frame>
            <third_frame>   W  S  P  I  *  *  F  F  V  A  L  S  M  H  I  H  H  V  *  C  F  M  S  Y  Y  S  S  I  V  T  L  D  V  S  C  F  F  M  E  *  T  V  G  L  I  V  Q  I  S  F  C  *  S  Q  F  C  F  L  S  A  L  *  L  S  S  Y  C  L  H  D  L  F  H  E  A  A  L  F  I  P  P  D  N  V  L  P  S  T  L  T  P  K  D  F  F  D  L  L  I  C  E  H  *  F  S  M  V  I  T  *  R  K  V  C  L  W  T  R  *  L  K  V  S  R  S  S  F  I  S  L  K  C  S  F  C  *  T  Y  S  L  S  L  F  V  Y  S  G  R  K  D  V  S  L  H  R  M  F  T  I  S  R  A  Q  F  C  H  D  T  I  A  V  M  M  H  G  S  L  F  G  S  D  N  C  N  T  S  I  V  N  F  H  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46454" stop="46675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVSNIMIFCCAIYAHTPCIMFYELLFIHSDIRRKLFLHGVNSGIDCSNIFLLKSILFLICSLTQQLLLTRSVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46257" e_stop="46296"/>
            <exon e_start="46388" e_stop="46451"/>
            <exon e_start="46994" e_stop="47681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46257" e_stop="46296" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46297" i_stop="46387" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46388" e_stop="46451" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.961">
            <gDNA_intron_boundary i_start="46452" i_stop="46993" i_length="542"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="46994" e_stop="47681" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46257" stop="46296"/>
              <exon start="46388" stop="46451"/>
              <exon start="46994" stop="47681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAGGTTTGAGCTAGAGGTTGAAGCAAACATTCGTG : GTGTTCAGCTGACAGAAGAAGACGTCATCATATCAGCCGTTGATGATGATGATAGAGTGTATTG : TGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGATTGCTCTTACGATATCTGTGTCAATTGTTGTCGGGAACTCAGAGATGGTGCCCAGCATGGAGCTACTGAAGTCAGCTCATCTCTCAGCAAGTCGGTGGAAGCTAGTCGTATCACAGCATTGAAGGGAAACAATGCGCCAGATGGCTGGAGAAGTCCAGAGACCCTCCTTGCTAATGATTGTCCAACTCACATGTCCTTCGATGTTGCTGAGTGGAGAGCCAAATCTGATGGCAGCATACCCTGTCCTCCTAAAGAGTGTGGTGGTTGTGGTTCTTCTTTAATGGCTCTAAGGCGTATCTTCGAAGCAAATTGGGTAGACCAACTAATTCAAAGTGCTGAGGCCTTAACATGCAACTACCGCCTTCCAGATATAGATTTGTCGCATGGGTGTTCATTTTGTCTTGCTACCACTTCTGTCCAAGACGGTGATAACCGATGTCAAGTAAGAGAAGCATCTTTTAGGAACAACAGCCATGATAATCTTCTGTACTGTCCTAATGCTGTTCATGTTGATGGCAACGAGTTTGAGCATTTTCAAATGCATTGGAGGGCTGGTGAACCTGTAATAGTTAGAAATGCACAAGCTAAGGCCTCTGGTCTTAGCTGGGAGCCAATGGTAATGTGGAGGGCCTTC</gDNA_template>
            <first_frame> E  Q  R  F  E  L  E  V  E  A  N  I  R   : G  V  Q  L  T  E  E  D  V  I  I  S  A  V  D  D  D  D  R  V  Y  C :   D  N  C  N  T  S  I  V  N  F  H  R  S  C  P  N  P  D  C  S  Y  D  I  C  V  N  C  C  R  E  L  R  D  G  A  Q  H  G  A  T  E  V  S  S  S  L  S  K  S  V  E  A  S  R  I  T  A  L  K  G  N  N  A  P  D  G  W  R  S  P  E  T  L  L  A  N  D  C  P  T  H  M  S  F  D  V  A  E  W  R  A  K  S  D  G  S  I  P  C  P  P  K  E  C  G  G  C  G  S  S  L  M  A  L  R  R  I  F  E  A  N  W  V  D  Q  L  I  Q  S  A  E  A  L  T  C  N  Y  R  L  P  D  I  D  L  S  H  G  C  S  F  C  L  A  T  T  S  V  Q  D  G  D  N  R  C  Q  V  R  E  A  S  F  R  N  N  S  H  D  N  L  L  Y  C  P  N  A  V  H  V  D  G  N  E  F  E  H  F  Q  M  H  W  R  A  G  E  P  V  I  V  R  N  A  Q  A  K  A  S  G  L  S  W  E  P  M  V  M  W  R  A  F </first_frame>
            <second_frame>  S  K  G  L  S  *  R  L  K  Q  T  F  V  :  V  F  S  *  Q  K  K  T  S  S  Y  Q  P  L  M  M  M  I  E  C  I   : V  I  I  A  T  H  P  L  S  I  S  I  E  A  A  Q  I  L  I  A  L  T  I  S  V  S  I  V  V  G  N  S  E  M  V  P  S  M  E  L  L  K  S  A  H  L  S  A  S  R  W  K  L  V  V  S  Q  H  *  R  E  T  M  R  Q  M  A  G  E  V  Q  R  P  S  L  L  M  I  V  Q  L  T  C  P  S  M  L  L  S  G  E  P  N  L  M  A  A  Y  P  V  L  L  K  S  V  V  V  V  V  L  L  *  W  L  *  G  V  S  S  K  Q  I  G  *  T  N  *  F  K  V  L  R  P  *  H  A  T  T  A  F  Q  I  *  I  C  R  M  G  V  H  F  V  L  L  P  L  L  S  K  T  V  I  T  D  V  K  *  E  K  H  L  L  G  T  T  A  M  I  I  F  C  T  V  L  M  L  F  M  L  M  A  T  S  L  S  I  F  K  C  I  G  G  L  V  N  L  *  *  L  E  M  H  K  L  R  P  L  V  L  A  G  S  Q  W  *  C  G  G  P   </second_frame>
            <third_frame>   A  K  V  *  A  R  G  *  S  K  H  S  W :   C  S  A  D  R  R  R  R  H  H  I  S  R  *  *  *  *  *  S  V  L  :  *  *  L  Q  H  I  H  C  Q  F  P  *  K  L  P  K  S  *  L  L  L  R  Y  L  C  Q  L  L  S  G  T  Q  R  W  C  P  A  W  S  Y  *  S  Q  L  I  S  Q  Q  V  G  G  S  *  S  Y  H  S  I  E  G  K  Q  C  A  R  W  L  E  K  S  R  D  P  P  C  *  *  L  S  N  S  H  V  L  R  C  C  *  V  E  S  Q  I  *  W  Q  H  T  L  S  S  *  R  V  W  W  L  W  F  F  F  N  G  S  K  A  Y  L  R  S  K  L  G  R  P  T  N  S  K  C  *  G  L  N  M  Q  L  P  P  S  R  Y  R  F  V  A  W  V  F  I  L  S  C  Y  H  F  C  P  R  R  *  *  P  M  S  S  K  R  S  I  F  *  E  Q  Q  P  *  *  S  S  V  L  S  *  C  C  S  C  *  W  Q  R  V  *  A  F  S  N  A  L  E  G  W  *  T  C  N  S  *  K  C  T  S  *  G  L  W  S  *  L  G  A  N  G  N  V  E  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46257" stop="46296"/>
                    <exon start="46388" stop="46451"/>
                    <exon start="46994" stop="47681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQRFELEVEANIRGVQLTEEDVIISAVDDDDRVYCDNCNTSIVNFHRSCPNPDCSYDICVNCCRELRDGAQHGATEVSSSLSKSVEASRITALKGNNAPDGWRSPETLLANDCPTHMSFDVAEWRAKSDGSIPCPPKECGGCGSSLMALRRIFEANWVDQLIQSAEALTCNYRLPDIDLSHGCSFCLATTSVQDGDNRCQVREASFRNNSHDNLLYCPNAVHVDGNEFEHFQMHWRAGEPVIVRNAQAKASGLSWEPMVMWRAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="47692" PGL_stop="49824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47692" e_stop="47753"/>
            <exon e_start="48470" e_stop="48799"/>
            <exon e_start="49571" e_stop="49824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="1.000" e_score="0.919"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.985"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="47692" e_stop="47753" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47754" i_stop="48469" i_length="716"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="48470" e_stop="48799" e_length="330"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48800" i_stop="49570" i_length="771"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="49571" e_stop="49824" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47692" stop="47753"/>
              <exon start="48470" stop="48799"/>
              <exon start="49571" stop="49824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAAAAGCTGAAAGAGGAGCATTTCTCTGTCATGTCCATTGATTGCTTGGATTGGTGTCAG : GTTCAGATAAATATTCATCAGTTCTTCAAGGGCTACTTGGAGGGTCGCAGGCATCACAATGGGTGGCCAGAAATTTTAAAACTGAAGGATTGGCCTCCGGCTAATACTTTTGAAGAATGTTTGCCGAGGCATGGAGCTGACTTTTTTGCTATGCTTCCGTTTAGCGAATACACTCATCCTAGAAAAGGTCTTCTAAATTTGGCCACTAAGCTCCCCGATACTGCCTTGAAGCCAGACTTGGGACCTAAAACTTATATTGCTTATGGATATCAAGAAGAGCTTGGAAGAGGTGATTCTGTCACTAAGTTGCATTGTGATATCTCTGATGCG : GTCAACATATTGACTCATACAACCAAAGCAAAAGTTGATCACAATCAACGTGAAATCATTGAAAAACTAAGGAAGCAACAAGAGGTTGAAGATTCAAAGGAACATTGTCCAGGCATAGCTGAGGCTCCGGATTCTCATCAAAGATCTGACGAAACTGAAACTATAAACTTTTATTCTCAGGAAAGCACTGGTGATAACAAAAGTTGCTTGCCAGAAACTATGGACAAGGGGAAAGATATTGATAAAGGAGAAAA</gDNA_template>
            <first_frame> V  K  S  *  K  R  S  I  S  L  S  C  P  L  I  A  W  I  G  V  R :   F  R  *  I  F  I  S  S  S  R  A  T  W  R  V  A  G  I  T  M  G  G  Q  K  F  *  N  *  R  I  G  L  R  L  I  L  L  K  N  V  C  R  G  M  E  L  T  F  L  L  C  F  R  L  A  N  T  L  I  L  E  K  V  F  *  I  W  P  L  S  S  P  I  L  P  *  S  Q  T  W  D  L  K  L  I  L  L  M  D  I  K  K  S  L  E  E  V  I  L  S  L  S  C  I  V  I  S  L  M  R :   S  T  Y  *  L  I  Q  P  K  Q  K  L  I  T  I  N  V  K  S  L  K  N  *  G  S  N  K  R  L  K  I  Q  R  N  I  V  Q  A  *  L  R  L  R  I  L  I  K  D  L  T  K  L  K  L  *  T  F  I  L  R  K  A  L  V  I  T  K  V  A  C  Q  K  L  W  T  R  G  K  I  L  I  K  E  K  </first_frame>
            <second_frame>  *  K  A  E  R  G  A  F  L  C  H  V  H  *  L  L  G  L  V  S   : G  S  D  K  Y  S  S  V  L  Q  G  L  L  G  G  S  Q  A  S  Q  W  V  A  R  N  F  K  T  E  G  L  A  S  G  *  Y  F  *  R  M  F  A  E  A  W  S  *  L  F  C  Y  A  S  V  *  R  I  H  S  S  *  K  R  S  S  K  F  G  H  *  A  P  R  Y  C  L  E  A  R  L  G  T  *  N  L  Y  C  L  W  I  S  R  R  A  W  K  R  *  F  C  H  *  V  A  L  *  Y  L  *  C   : G  Q  H  I  D  S  Y  N  Q  S  K  S  *  S  Q  S  T  *  N  H  *  K  T  K  E  A  T  R  G  *  R  F  K  G  T  L  S  R  H  S  *  G  S  G  F  S  S  K  I  *  R  N  *  N  Y  K  L  L  F  S  G  K  H  W  *  *  Q  K  L  L  A  R  N  Y  G  Q  G  E  R  Y  *  *  R  R  K </second_frame>
            <third_frame>   K  K  L  K  E  E  H  F  S  V  M  S  I  D  C  L  D  W  C  Q  :  V  Q  I  N  I  H  Q  F  F  K  G  Y  L  E  G  R  R  H  H  N  G  W  P  E  I  L  K  L  K  D  W  P  P  A  N  T  F  E  E  C  L  P  R  H  G  A  D  F  F  A  M  L  P  F  S  E  Y  T  H  P  R  K  G  L  L  N  L  A  T  K  L  P  D  T  A  L  K  P  D  L  G  P  K  T  Y  I  A  Y  G  Y  Q  E  E  L  G  R  G  D  S  V  T  K  L  H  C  D  I  S  D  A  :  V  N  I  L  T  H  T  T  K  A  K  V  D  H  N  Q  R  E  I  I  E  K  L  R  K  Q  Q  E  V  E  D  S  K  E  H  C  P  G  I  A  E  A  P  D  S  H  Q  R  S  D  E  T  E  T  I  N  F  Y  S  Q  E  S  T  G  D  N  K  S  C  L  P  E  T  M  D  K  G  K  D  I  D  K  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47694" stop="47753"/>
                    <exon start="48470" stop="48799"/>
                    <exon start="49571" stop="49822"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKLKEEHFSVMSIDCLDWCQVQINIHQFFKGYLEGRRHHNGWPEILKLKDWPPANTFEECLPRHGADFFAMLPFSEYTHPRKGLLNLATKLPDTALKPDLGPKTYIAYGYQEELGRGDSVTKLHCDISDAVNILTHTTKAKVDHNQREIIEKLRKQQEVEDSKEHCPGIAEAPDSHQRSDETETINFYSQESTGDNKSCLPETMDKGKDIDKGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="54746" PGL_stop="55657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54746" e_stop="55657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="54746" e_stop="55657" e_length="912"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54746" stop="55657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54887" stop="55377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGGAATGACAAGAAATCAAGAAACCAAAGAGAGACAGTACGACATCGTTACTTGATTCCTGTAGATTTTTTTTCCCAAACACTTCATGTAGATATTCCTGAAAGTAACTATCATTTCATTGCTTGCTGCTTATCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTT</gDNA_template>
            <first_frame> V  G  M  T  R  N  Q  E  T  K  E  R  Q  Y  D  I  V  T  *  F  L  *  I  F  F  P  K  H  F  M  *  I  F  L  K  V  T  I  I  S  L  L  A  A  Y  H  S  F  G  Y  *  N  L  I  L  L  C  C  S  R  K  S  S  L  L  L  H  Y  Q  N  P  L  Y  K  Q  E  F  S  Q  F  F  S  F  L  C  L  M  G  H  L  L  N  P  T  K  V  S  S  L  P  T  N  I  K  S  *  N  C  Y  S  Y  P  H  P  F  S  L  H  N  H  L  Y  L  V  H  T  Y  K  K  K  E  S  L  L  R  F  L  V  F  L  C  W  G  V  E  F  P  L  N  *  A  D  M  A  A  V  L  R  S  K  S  S  R  R  T  A  S  M  A  I  T  H  F  R  Y  F  I  I  N  D  F  H  T  G  H  L  P  N  F  H  L  C  S  R  T  K  W  D  N  L  V  S  N  S  G  H  S  S  S  L  F  K  P  V  S  F  R  G  E  F  V  D  R  C  Y  D  N  L  K  N  S  S  R  K  S  K  E  K  I  N  M  S  S  N  Y  G  E  P  P  E  I  W  Q  P  P  G  E  G  I  V  V  R  P  G  V  K  F  V  Q  V  G  E  G  E  V  P  G  S  G  S  G  S  G  G  G  F  G  S  G  S  K  D  G  S  W  G  G  S  N  L  G  T  Q  F </first_frame>
            <second_frame>  *  E  *  Q  E  I  K  K  P  K  R  D  S  T  T  S  L  L  D  S  C  R  F  F  F  P  N  T  S  C  R  Y  S  *  K  *  L  S  F  H  C  L  L  L  I  T  L  L  D  I  K  I  *  F  F  C  V  A  L  E  N  P  H  Y  S  S  T  T  K  I  L  S  I  N  K  N  F  L  N  F  S  V  F  F  V  *  W  V  I  S  *  T  P  Q  K  S  P  L  F  R  Q  T  S  N  L  E  I  V  T  H  T  H  I  P  F  H  Y  I  I  I  S  I  L  F  I  H  I  K  R  K  N  L  Y  F  V  F  L  F  F  F  V  G  A  L  S  F  H  *  T  K  P  I  W  Q  L  Y  L  D  R  N  R  L  D  V  R  L  L  W  L  L  P  T  S  D  T  L  S  S  M  I  F  T  R  V  I  Y  P  I  S  I  C  V  V  E  P  N  G  I  I  W  S  Q  I  L  V  I  V  L  L  Y  S  N  L  Y  R  F  V  V  N  L  L  T  D  V  M  I  I  *  R  I  Q  V  G  R  V  R  R  K  L  I  C  L  V  T  M  G  N  L  L  R  F  G  N  H  L  V  R  G  L  W  F  V  L  V  *  N  L  F  R  W  V  K  G  K  F  L  V  R  V  R  V  L  E  V  G  L  V  P  G  Q  K  M  G  L  G  V  D  P  I  W  V  P  N   </second_frame>
            <third_frame>   R  N  D  K  K  S  R  N  Q  R  E  T  V  R  H  R  Y  L  I  P  V  D  F  F  S  Q  T  L  H  V  D  I  P  E  S  N  Y  H  F  I  A  C  C  L  S  L  F  W  I  L  K  F  N  S  S  V  L  L  *  K  I  L  I  T  P  P  L  P  K  S  S  L  *  T  R  I  F  S  I  F  Q  F  S  L  S  D  G  S  S  L  K  P  H  K  S  L  L  S  S  D  K  H  Q  I  L  K  L  L  L  I  P  T  S  L  F  I  T  *  S  S  L  S  C  S  Y  I  *  K  E  R  I  F  T  S  F  S  C  F  S  L  L  G  R  *  V  S  T  E  L  S  R  Y  G  S  C  T  *  I  E  I  V  *  T  Y  G  F  Y  G  Y  Y  P  L  Q  I  L  Y  H  Q  *  F  S  H  G  S  F  T  Q  F  P  F  V  *  S  N  Q  M  G  *  F  G  L  K  F  W  S  *  F  F  F  I  Q  T  C  I  V  S  W  *  I  C  *  P  M  L  *  *  F  E  E  F  K  *  E  E  *  G  E  N  *  Y  V  *  *  L  W  G  T  S  *  D  L  A  T  T  W  *  G  D  C  G  S  S  W  C  E  I  C  S  G  G  *  R  G  S  S  W  F  G  F  G  F  W  R  W  V  W  F  R  V  K  R  W  V  L  G  W  I  Q  F  G  Y  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55196" stop="55657"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADMAAVLRSKSSRRTASMAITHFRYFIINDFHTGHLPNFHLCSRTKWDNLVSNSGHSSSLFKPVSFRGEFVDRCYDNLKNSSRKSKEKINMSSNYGEPPEIWQPPGEGIVVRPGVKFVQVGEGEVPGSGSGSGGGFGSGSKDGSWGGSNLGTQF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="56158" PGL_stop="63269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56158" e_stop="56267"/>
            <exon e_start="56801" e_stop="56885"/>
            <exon e_start="58269" e_stop="58319"/>
            <exon e_start="58506" e_stop="58580"/>
            <exon e_start="58685" e_stop="58762"/>
            <exon e_start="59610" e_stop="59666"/>
            <exon e_start="60156" e_stop="60226"/>
            <exon e_start="60313" e_stop="60412"/>
            <exon e_start="61062" e_stop="61166"/>
            <exon e_start="61386" e_stop="61448"/>
            <exon e_start="61615" e_stop="61737"/>
            <exon e_start="62798" e_stop="62953"/>
            <exon e_start="63046" e_stop="63269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.991" e_score="0.990"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.254" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56158" e_stop="56267" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.908">
            <gDNA_intron_boundary i_start="56268" i_stop="56800" i_length="533"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56801" e_stop="56885" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.967">
            <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58269" e_stop="58319" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58506" e_stop="58580" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.945">
            <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58685" e_stop="58762" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59610" e_stop="59666" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="60156" e_stop="60226" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="60313" e_stop="60412" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.932" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="61062" e_stop="61166" e_length="105"/>
          </exon>
          <intron i_serial="9" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61386" e_stop="61448" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.254" acc_prob="0.988">
            <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61615" e_stop="61737" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62798" e_stop="62953" e_length="156"/>
          </exon>
          <intron i_serial="12" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92"/>
          </intron>
          <exon e_serial="13" e_score="0.987">
            <gDNA_exon_boundary e_start="63046" e_stop="63269" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56158" stop="56267"/>
              <exon start="56801" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAG : GACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAG : GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT : GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG : GCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACA : ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG : ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG : GCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA : GTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG : GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG : GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG : ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG : GCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTTGCTATTTATTCTTTGATCTGCACTAGCT</gDNA_template>
            <first_frame> G  T  K  A  C  R  K  *  Q  *  *  K  N  R  W  S  R  K  *  I  C  G  A  *  E  E  *  H  P  F  N  G  T  N  R  F  R :   T  G  K  T  L  L  A  K  T  L  A  R  L  V  N  V  P  F  V  I  A  D  A  T  T  L  T  Q  :  A  G  Y  V  G  E  D  V  E  S  I  L  Y  K  L  L  T  :  V  A  D  Y  N  V  A  A  A  Q  Q  G  I  V  Y  I  D  E  V  D  K  I  T  K  K  :  A  E  S  L  N  I  S  R  D  V  S  G  E  G  V  Q  Q  A  L  L  K  M  L  E  G  T  :  I  V  N  V  P  E  K  G  A  R  K  H  P  R  G  D  N  I  Q  :  I  D  T  K  D  I  L  F  I  C  G  G  A  F  I  D  L  E  K  T  I  S  E  R :   R  Q  D  S  S  I  G  F  G  A  P  V  R  T  N  M  R  T  G  G  V  T  S  A  A  V  T  S  S  L  L  E  T  :  V  E  S  S  D  L  I  S  Y  G  L  I  P  E  F  V  G  R  F  P  I  L  V  S  L  S  A  L  T  E  D  Q  L  V  Q  :  V  L  T  E  P  K  N  A  L  G  K  Q  Y  K  K  M  F  Q  M  N  G  :  V  K  L  H  F  V  E  A  A  L  R  L  V  A  R  K  A  I  S  K  N  T  G  A  R  G  L  R  S  I  L  E  N  I  L  M  D  A  M  Y  E  :  I  P  D  V  R  T  G  D  D  V  I  D  A  V  V  V  D  E  E  S  V  G  T  E  G  R  G  C  G  G  K  I  L  Y  G  K  G  A  F  D  R  H  F  P  Q  N  R  S  K  D  S  E  :  A  N  M  E  A  S  D  G  D  H  E  A  E  Q  E  L  P  S  I  V  A  L  *  M  F  C  E  V  Y  F  W  S  H  L  C  T  V  I  *  N  S  N  K  Q  C  Y  L  N  R  A  Q  C  T  F  I  L  H  F  V  V  F  L  L  L  S  C  Y  L  F  F  D  L  H  *   </first_frame>
            <second_frame>  V  P  R  P  A  G  N  D  S  S  E  K  T  D  G  V  E  N  E  S  V  E  L  E  K  S  N  I  L  L  M  G  P  T  G  S   : G  Q  G  K  L  Y  L  P  R  P  *  L  D  W  *  M  F  P  L  *  *  Q  M  L  R  H  *  L  R :   Q  D  M  L  G  K  M  W  N  L  F  Y  I  S  S  S  L :   L  L  T  T  M  *  Q  L  L  S  K  A  *  C  I  L  M  K  L  T  K  S  R  K  R :   L  K  A  S  T  S  V  E  M  S  Q  E  R  A  S  S  R  H  C  *  R  C  L  K  E  Q :   L  S  M  C  R  R  R  E  L  G  S  T  L  E  G  I  I  F  R :   L  I  P  K  I  F  S  L  Y  V  V  E  P  S  L  T  W  R  K  Q  S  Q  K   : G  A  K  I  L  L  *  D  L  V  H  Q  F  A  Q  T  *  G  L  V  V  L  Q  V  L  L  *  R  H  L  Y  W  R  Q :   L  K  V  V  I  L  Y  H  T  V  *  Y  L  S  L  S  A  D  S  P  F  L  L  V  C  Q  L  *  L  R  I  N  L  C  R :   F  *  R  S  Q  K  M  R  *  G  S  S  T  K  R  C  S  R  *  T  G :   *  S  C  I  L  L  K  L  H  *  D  W  *  L  G  K  Q  Y  L  K  I  L  V  L  V  D  C  D  P  Y  W  R  I  Y  *  W  M  L  C  M  R :   F  L  M  S  E  Q  A  M  M  *  *  M  P  L  *  L  M  R  S  L  *  E  L  R  G  E  D  A  G  V  K  S  F  M  A  K  V  H  L  T  D  T  S  H  R  I  D  Q  R  I  L  R :   Q  T  W  R  R  P  M  E  T  M  R  Q  N  R  N  F  L  P  L  L  L  C  K  C  S  V  R  C  I  S  G  L  T  C  V  Q  *  S  K  I  Q  I  N  N  V  I  *  I  E  L  N  V  L  S  Y  C  I  L  L  C  F  Y  C  Y  L  A  I  Y  S  L  I  C  T  S  </second_frame>
            <third_frame>   Y  Q  G  L  Q  E  M  T  V  V  K  K  Q  M  E  *  K  M  N  L  W  S  L  R  R  V  T  S  F  *  W  D  Q  Q  V  Q  :  D  R  E  N  F  T  C  Q  D  L  S  S  I  G  E  C  S  L  C  N  S  R  C  Y  D  T  N  S   : G  R  I  C  W  G  R  C  G  I  Y  S  I  *  A  P  H   : C  C  *  L  Q  C  S  S  C  S  A  R  H  S  V  Y  *  *  S  *  Q  N  H  E  K   : G  *  K  P  Q  H  Q  *  R  C  L  R  R  G  R  P  A  G  I  A  E  D  A  *  R  N   : N  C  Q  C  A  G  E  G  S  S  E  A  P  *  R  G  *  Y  S   : D  *  Y  Q  R  Y  S  L  Y  M  W  W  S  L  H  *  L  G  E  N  N  L  R  K  :  A  P  R  F  F  Y  R  I  W  C  T  S  S  H  K  H  E  D  W  W  C  Y  K  C  C  C  D  V  I  F  I  G  D   : S  *  K  *  *  S  Y  I  I  R  S  D  T  *  V  C  R  P  I  P  H  S  C  *  S  V  S  F  N  *  G  S  T  C  A   : G  S  N  G  A  K  K  C  A  R  E  A  V  Q  K  D  V  P  D  E  R   : G  K  V  A  F  C  *  S  C  T  K  I  G  S  *  E  S  N  I  *  K  Y  W  C  S  W  I  A  I  H  I  G  E  Y  I  D  G  C  Y  V  *   : D  S  *  C  Q  N  R  R  *  C  N  R  C  R  C  S  *  *  G  V  C  R  N  *  G  A  R  M  R  G  *  N  P  L  W  Q  R  C  I  *  P  T  L  P  T  E  *  I  K  G  F  *   : G  K  H  G  G  V  R  W  R  P  *  G  R  T  G  T  S  F  H  C  C  F  V  N  V  L  *  G  V  F  L  V  S  L  V  Y  S  N  L  K  F  K  *  T  M  L  F  K  *  S  S  M  Y  F  H  T  A  F  C  C  V  F  T  V  I  L  L  F  I  L  *  S  A  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56239" stop="56267"/>
                    <exon start="56801" stop="56885"/>
                    <exon start="58269" stop="58319"/>
                    <exon start="58506" stop="58580"/>
                    <exon start="58685" stop="58762"/>
                    <exon start="59610" stop="59666"/>
                    <exon start="60156" stop="60226"/>
                    <exon start="60313" stop="60412"/>
                    <exon start="61062" stop="61166"/>
                    <exon start="61386" stop="61448"/>
                    <exon start="61615" stop="61737"/>
                    <exon start="62798" stop="62953"/>
                    <exon start="63046" stop="63114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPFNGTNRFRTGKTLLAKTLARLVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRTNMRTGGVTSAAVTSSLLETVESSDLISYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKMFQMNGVKLHFVEAALRLVARKAISKNTGARGLRSILENILMDAMYEIPDVRTGDDVIDAVVVDEESVGTEGRGCGGKILYGKGAFDRHFPQNRSKDSEANMEASDGDHEAEQELPSIVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59668" e_stop="59700"/>
            <exon e_start="60169" e_stop="60226"/>
            <exon e_start="60313" e_stop="60412"/>
            <exon e_start="61062" e_stop="61595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.991" e_score="0.990"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="59668" e_stop="59700" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59701" i_stop="60168" i_length="468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60169" e_stop="60226" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="60313" e_stop="60412" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="61062" e_stop="61595" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59668" stop="59700"/>
              <exon start="60169" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGTTATGAAAACTTCTCATTTTGGGATTAAG : ATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG : GCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA : GTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATAC</gDNA_template>
            <first_frame> *  V  M  K  T  S  H  F  G  I  K  :  I  F  S  L  Y  V  V  E  P  S  L  T  W  R  K  Q  S  Q  K   : G  A  K  I  L  L  *  D  L  V  H  Q  F  A  Q  T  *  G  L  V  V  L  Q  V  L  L  *  R  H  L  Y  W  R  Q :   L  K  V  V  I  L  Y  H  T  V  *  Y  L  S  L  S  A  D  S  P  F  L  L  V  C  Q  L  *  L  R  I  N  L  C  R  *  *  L  M  F  A  V  T  W  F  F  G  T  N  C  L  V  H  I  I  R  A  C  M  E  S  W  V  F  L  C  L  N  K  V  D  L  Y  I  S  S  A  I  G  F  N  L  P  V  L  S  S  R  I  *  D  Y  R  A  N  F  D  F  S  L  L  S  V  S  L  L  C  R  F  *  R  S  Q  K  M  R  *  G  S  S  T  K  R  C  S  R  *  T  G  *  V  L  A  S  Q  N  L  S  W  V  C  R  K  M  H  R  F  I  F  L  D  P  V  S  Y  G  Q  G  A  G  W  S  F  S  G  F  L  L  I  *  S  E  C  Y  F  S  H   </first_frame>
            <second_frame>  R  L  *  K  L  L  I  L  G  L  R :   Y  S  L  Y  M  W  W  S  L  H  *  L  G  E  N  N  L  R  K  :  A  P  R  F  F  Y  R  I  W  C  T  S  S  H  K  H  E  D  W  W  C  Y  K  C  C  C  D  V  I  F  I  G  D   : S  *  K  *  *  S  Y  I  I  R  S  D  T  *  V  C  R  P  I  P  H  S  C  *  S  V  S  F  N  *  G  S  T  C  A  G  N  D  *  C  L  P  *  L  G  S  L  A  L  I  A  L  C  T  L  L  G  L  V  W  K  A  G  S  S  F  A  *  I  R  W  I  C  T  *  V  L  P  L  G  L  I  F  Q  Y  F  H  P  E  Y  E  I  I  E  Q  I  L  I  F  L  F  S  L  F  R  F  F  A  G  S  N  G  A  K  K  C  A  R  E  A  V  Q  K  D  V  P  D  E  R  G  E  C  *  P  L  K  I  F  L  G  Y  A  E  R  C  I  V  L  S  F  *  T  L  Y  H  M  G  K  E  L  V  G  A  F  L  G  S  C  *  F  D  Q  N  V  T  S  L  I  </second_frame>
            <third_frame>   G  Y  E  N  F  S  F  W  D  *   : D  I  L  F  I  C  G  G  A  F  I  D  L  E  K  T  I  S  E  R :   R  Q  D  S  S  I  G  F  G  A  P  V  R  T  N  M  R  T  G  G  V  T  S  A  A  V  T  S  S  L  L  E  T  :  V  E  S  S  D  L  I  S  Y  G  L  I  P  E  F  V  G  R  F  P  I  L  V  S  L  S  A  L  T  E  D  Q  L  V  Q  V  M  T  N  V  C  R  N  L  V  L  W  H  *  L  P  C  A  H  Y  *  G  L  Y  G  K  L  G  L  P  L  L  E  *  G  G  F  V  H  K  F  C  H  W  V  *  S  S  S  T  F  I  Q  N  M  R  L  *  S  K  F  *  F  F  S  S  L  C  F  A  S  L  Q  V  L  T  E  P  K  N  A  L  G  K  Q  Y  K  K  M  F  Q  M  N  G  V  S  V  S  L  S  K  S  F  L  G  M  Q  K  D  A  S  F  Y  L  F  R  P  C  I  I  W  A  R  S  W  L  E  L  F  W  V  P  V  D  L  I  R  M  L  L  L  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59700" stop="60226"/>
                    <exon start="60313" stop="60412"/>
                    <exon start="61062" stop="61208"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DILFICGGAFIDLEKTISERRQDSSIGFGAPVRTNMRTGGVTSAAVTSSLLETVESSDLISYGLIPEFVGRFPILVSLSALTEDQLVQVMTNVCRNLVLWH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61353" stop="61595"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSSLCFASLQVLTEPKNALGKQYKKMFQMNGVSVSLSKSFLGMQKDASFYLFRPCIIWARSWLELFWVPVDLIRMLLLSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="70788" PGL_stop="74732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70788" e_stop="71309"/>
            <exon e_start="73542" e_stop="73928"/>
            <exon e_start="74626" e_stop="74732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.189" e_score="0.997"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="70788" e_stop="71309" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71310" i_stop="73541" i_length="2232"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="73542" e_stop="73928" e_length="387"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.189">
            <gDNA_intron_boundary i_start="73929" i_stop="74625" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="0.953">
            <gDNA_exon_boundary e_start="74626" e_stop="74732" e_length="107"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70788" stop="71309"/>
              <exon start="73542" stop="73928"/>
              <exon start="74626" stop="74732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAATTTGAAGGTGATCCTCATTTCTCTCACAGAAATTCAGAGCCACCGGAGAGGAAGAAGAAGAGGGTGGGGTGGGGGGTTTTCAGGGAGAAAAAAAGTTTGTTTGATTTGGTTCTTTCATCAGAATCCGTTGCCGATCTCTATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAG : TGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCCTTATTTGGTTTCACATTTAAGAGATGATCACAAAGTGGATATGCACACGGGGTGCACATTCAACCATCGTTACGTGAAATCAAATCCTCGAGAAGTAGAAAATGCCACATGGATGCTGACG : GTCTTCCATTGTTTTGGACAGTATTTCTGTCTCCACTTTGAGGCCTTCCAGCTTGGCATGGCCCCTGTTTATATGGCATTTCTACGATTTATGGGTGATGAATCTGA</gDNA_template>
            <first_frame> G  N  L  K  V  I  L  I  S  L  T  E  I  Q  S  H  R  R  G  R  R  R  G  W  G  G  G  F  S  G  R  K  K  V  C  L  I  W  F  F  H  Q  N  P  L  P  I  S  I  I  S  F  L  L  L  L  L  L  V  V  V  L  A  V  N  I  S  R  N  V  N  F  V  I  C  A  I  C  D  L  K  F  I  G  W  R  E  R  L  N  L  F  L  Y  L  I  I  G  S  K  W  V  A  F  R  F  C  K  G  A  M  E  M  E  N  I  E  C  V  S  T  T  D  G  I  E  D  E  E  I  Q  L  S  H  N  Q  F  S  S  A  K  P  H  N  I  L  F  P  G  L  A  P  T  S  V  H  E  L  L  E  C  P  V  C  T  N  S  M  Y  P  P  I  H  Q  :  C  H  N  G  H  T  L  C  S  T  C  K  T  R  V  H  N  R  C  P  T  C  R  Q  E  L  G  D  I  R  C  L  A  L  E  K  V  A  E  S  L  E  L  P  C  K  Y  F  S  L  G  C  P  E  I  F  P  Y  Y  S  K  L  K  H  E  A  L  C  N  F  R  P  Y  N  C  P  Y  A  G  S  E  C  S  V  T  G  D  I  P  Y  L  V  S  H  L  R  D  D  H  K  V  D  M  H  T  G  C  T  F  N  H  R  Y  V  K  S  N  P  R  E  V  E  N  A  T  W  M  L  T  :  V  F  H  C  F  G  Q  Y  F  C  L  H  F  E  A  F  Q  L  G  M  A  P  V  Y  M  A  F  L  R  F  M  G  D  E  S   </first_frame>
            <second_frame>  G  I  *  R  *  S  S  F  L  S  Q  K  F  R  A  T  G  E  E  E  E  E  G  G  V  G  G  F  Q  G  E  K  K  F  V  *  F  G  S  F  I  R  I  R  C  R  S  L  *  F  H  F  F  C  F  F  F  L  L  L  F  L  P  L  I  Y  Q  E  M  *  I  L  *  Y  A  P  F  V  T  *  N  L  L  G  G  E  K  D  *  I  F  F  S  I  *  *  L  G  Q  S  G  L  L  S  D  F  V  K  E  Q  W  K  W  R  T  L  S  V  F  Q  Q  L  M  G  L  K  M  K  R  S  S  Y  H  I  I  N  F  L  L  Q  N  L  I  I  F  F  F  P  D  L  P  L  L  V  Y  M  N  C  L  N  A  P  F  V  P  I  L  C  I  H  Q  F  I  S :   V  T  M  G  T  H  F  V  L  P  A  K  Q  G  C  T  I  D  V  L  H  V  D  K  S  L  V  I  *  G  A  *  L  W  R  R  L  Q  S  H  L  N  C  L  A  N  I  F  P  W  D  A  Q  K  Y  S  R  I  T  V  S  S  S  M  R  H  C  A  T  L  D  H  T  I  A  H  M  L  D  Q  N  V  Q  *  L  V  T  S  L  I  W  F  H  I  *  E  M  I  T  K  W  I  C  T  R  G  A  H  S  T  I  V  T  *  N  Q  I  L  E  K  *  K  M  P  H  G  C  *  R :   S  S  I  V  L  D  S  I  S  V  S  T  L  R  P  S  S  L  A  W  P  L  F  I  W  H  F  Y  D  L  W  V  M  N  L  </second_frame>
            <third_frame>   E  F  E  G  D  P  H  F  S  H  R  N  S  E  P  P  E  R  K  K  K  R  V  G  W  G  V  F  R  E  K  K  S  L  F  D  L  V  L  S  S  E  S  V  A  D  L  Y  N  F  I  S  F  A  S  S  S  C  C  C  S  C  R  *  Y  I  K  K  C  E  F  C  D  M  R  H  L  *  L  E  I  Y  W  V  E  R  K  I  E  S  F  S  L  F  D  N  W  V  K  V  G  C  F  Q  I  L  *  R  S  N  G  N  G  E  H  *  V  C  F  N  N  *  W  D  *  R  *  R  D  P  V  I  T  *  S  I  F  F  C  K  T  S  *  Y  S  F  S  R  T  C  P  Y  *  C  T  *  I  A  *  M  P  R  L  Y  Q  F  Y  V  S  T  N  S  S   : V  S  Q  W  A  H  T  L  F  Y  L  Q  N  K  G  A  Q  S  M  S  Y  M  *  T  R  A  W  *  Y  K  V  L  S  S  G  E  G  C  R  V  T  *  T  A  L  Q  I  F  F  L  G  M  P  R  N  I  P  V  L  Q  *  A  Q  A  *  G  T  V  Q  L  *  T  I  Q  L  P  I  C  W  I  R  M  F  S  D  W  *  H  P  L  F  G  F  T  F  K  R  *  S  Q  S  G  Y  A  H  G  V  H  I  Q  P  S  L  R  E  I  K  S  S  R  S  R  K  C  H  M  D  A  D   : G  L  P  L  F  W  T  V  F  L  S  P  L  *  G  L  P  A  W  H  G  P  C  L  Y  G  I  S  T  I  Y  G  *  *  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70788" stop="71309"/>
                    <exon start="73542" stop="73928"/>
                    <exon start="74626" stop="74730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNLKVILISLTEIQSHRRGRRRGWGGGFSGRKKVCLIWFFHQNPLPISIISFLLLLLLVVVLAVNISRNVNFVICAICDLKFIGWRERLNLFLYLIIGSKWVAFRFCKGAMEMENIECVSTTDGIEDEEIQLSHNQFSSAKPHNILFPGLAPTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSVTGDIPYLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="75230" PGL_stop="73975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75230" e_stop="74746"/>
            <exon e_start="74255" e_stop="73975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.399" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="75230" e_stop="74746" e_length="485"/>
          </exon>
          <intron i_serial="1" don_prob="0.399" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74745" i_stop="74256" i_length="490"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="74255" e_stop="73975" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75230" stop="74746"/>
              <exon start="74255" stop="73975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570957" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATTCAAGAATTGAGATGACACTACCAACACAAGGAGTTGTAAGATGGTTATTAACAATTGATACAACTAAATCTTCAGGGACAATGATATGTAGCTGGGCAGAGCATCAAGTTTCGAGGGTACAAACAGATTGATGTCTGTCTCTTTACACCCACTGTCACACGCACATACATCCACAGGAAAAAATAGGGGAGGGAAAAGGAAAAAAAAGAAAGAACAATCACTCTGGAGAAATAAATTAGCTACACAGATTCGGTATGCACACTCCACCTTCTGGATTTTGCTGTTCTTTCCATATCCTTCCAGTGACTCGAAGTTTTAGCTCCTTTCGATCCCCTCCAGAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCATGACTGTCCCTGACCTTGCGGTGGCTATCTCGAACACTTCTTGGTGTTCCCTCCCATATGAGCTTTCTACCATTTCCTCCTACTTCGAGACTATAACT : GTCCAATCTATTCCTTAACAGAGTCTCTAGGAAGGGATCTACCTATCAAAGAAAACATGAGAGAAAATATTGCAGAAACAGAGAACAAGATAATACAGGGTTTCCCAAAGCTATAATTTGGTTATCCACATTCTGCCATTTCAATAATTCATCCACAGAACTTTTACGGGTCTATTTCTTAGCATCCTGATTGTTAGGGTGAATAAAAAGGATTCTTGAACTTTCATAAACCAAAATAGCACGGAACATACAACACATGAATCATGATGCTATGTTGAGCA</gDNA_template>
            <first_frame> N  Y  S  R  I  E  M  T  L  P  T  Q  G  V  V  R  W  L  L  T  I  D  T  T  K  S  S  G  T  M  I  C  S  W  A  E  H  Q  V  S  R  V  Q  T  D  *  C  L  S  L  Y  T  H  C  H  T  H  I  H  P  Q  E  K  I  G  E  G  K  G  K  K  R  K  N  N  H  S  G  E  I  N  *  L  H  R  F  G  M  H  T  P  P  S  G  F  C  C  S  F  H  I  L  P  V  T  R  S  F  S  S  F  R  S  P  P  E  K  K  S  A  M  L  R  W  I  I  R  P  S  *  L  S  L  T  L  R  W  L  S  R  T  L  L  G  V  P  S  H  M  S  F  L  P  F  P  P  T  S  R  L  *  L :   S  N  L  F  L  N  R  V  S  R  K  G  S  T  Y  Q  R  K  H  E  R  K  Y  C  R  N  R  E  Q  D  N  T  G  F  P  K  A  I  I  W  L  S  T  F  C  H  F  N  N  S  S  T  E  L  L  R  V  Y  F  L  A  S  *  L  L  G  *  I  K  R  I  L  E  L  S  *  T  K  I  A  R  N  I  Q  H  M  N  H  D  A  M  L  S  </first_frame>
            <second_frame>  I  I  Q  E  L  R  *  H  Y  Q  H  K  E  L  *  D  G  Y  *  Q  L  I  Q  L  N  L  Q  G  Q  *  Y  V  A  G  Q  S  I  K  F  R  G  Y  K  Q  I  D  V  C  L  F  T  P  T  V  T  R  T  Y  I  H  R  K  K  *  G  R  E  K  E  K  K  E  R  T  I  T  L  E  K  *  I  S  Y  T  D  S  V  C  T  L  H  L  L  D  F  A  V  L  S  I  S  F  Q  *  L  E  V  L  A  P  F  D  P  L  Q  K  R  K  V  P  C  Y  V  G  L  L  D  H  H  D  C  P  *  P  C  G  G  Y  L  E  H  F  L  V  F  P  P  I  *  A  F  Y  H  F  L  L  L  R  D  Y  N   : C  P  I  Y  S  L  T  E  S  L  G  R  D  L  P  I  K  E  N  M  R  E  N  I  A  E  T  E  N  K  I  I  Q  G  F  P  K  L  *  F  G  Y  P  H  S  A  I  S  I  I  H  P  Q  N  F  Y  G  S  I  S  *  H  P  D  C  *  G  E  *  K  G  F  L  N  F  H  K  P  K  *  H  G  T  Y  N  T  *  I  M  M  L  C  *  A </second_frame>
            <third_frame>   L  F  K  N  *  D  D  T  T  N  T  R  S  C  K  M  V  I  N  N  *  Y  N  *  I  F  R  D  N  D  M  *  L  G  R  A  S  S  F  E  G  T  N  R  L  M  S  V  S  L  H  P  L  S  H  A  H  T  S  T  G  K  N  R  G  G  K  R  K  K  K  K  E  Q  S  L  W  R  N  K  L  A  T  Q  I  R  Y  A  H  S  T  F  W  I  L  L  F  F  P  Y  P  S  S  D  S  K  F  *  L  L  S  I  P  S  R  K  E  K  C  H  V  T  L  D  Y  *  T  I  M  T  V  P  D  L  A  V  A  I  S  N  T  S  W  C  S  L  P  Y  E  L  S  T  I  S  S  Y  F  E  T  I  T  :  V  Q  S  I  P  *  Q  S  L  *  E  G  I  Y  L  S  K  K  T  *  E  K  I  L  Q  K  Q  R  T  R  *  Y  R  V  S  Q  S  Y  N  L  V  I  H  I  L  P  F  Q  *  F  I  H  R  T  F  T  G  L  F  L  S  I  L  I  V  R  V  N  K  K  D  S  *  T  F  I  N  Q  N  S  T  E  H  T  T  H  E  S  *  C  Y  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75132" stop="74905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGRASSFEGTNRLMSVSLHPLSHAHTSTGKNRGGKRKKKKEQSLWRNKLATQIRYAHSTFWILLFFPYPSSDSKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="77318" PGL_stop="76282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77318" e_stop="76282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77318" e_stop="76282" e_length="1037"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77318" stop="76282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGT</gDNA_template>
            <first_frame> G  K  V  Q  R  R  N  Q  C  F  *  Q  H  G  R  E  E  V  *  T  R  H  I  V  L  Q  *  S  D  *  A  V  V  Q  K  *  L  V  G  *  G  *  G  A  L  *  G  Y  G  R  K  R  G  Q  P  *  *  V  H  V  C  F  V  D  G  Y  L  L  *  R  K  *  A  *  *  R  C  C  V  F  *  D  H  G  G  V  *  I  E  A  *  S  W  S  L  *  *  V  G  *  W  F  G  Q  S  W  *  S  *  *  S  K  I  I  F  *  S  D  D  G  K  A  Q  D  E  *  *  *  L  Q  V  Y  D  E  R  I  V  *  Y  W  A  A  *  *  G  A  *  D  C  G  *  N  V  E  G  G  S  S  *  F  L  *  *  V  A  R  V  C  S  R  S  L  G  E  G  R  *  R  *  G  V  D  Q  T  Y  G  *  Y  *  K  G  E  E  R  S  C  *  Q  G  G  *  S  S  *  K  S  E  G  Q  C  K  S  C  C  F  L  F  D  K  *  S  *  I  V  W  K  *  A  A  *  R  A  V  N  N  Y  W  *  G  C  Q  H  Q  R  Q  *  Q  T  R  G  G  E  C  S  R  N  C  C  G  G  *  F  L  W  *  G  W  R  S  *  E  P  C  C  C  R  S  *  K  *  W  C  T  L  M  R  *  Q  N  D  K  I  C  W  V  T  T  N  E  K  Q  *  *  V  S  F  H  S  A  T  L  A  S  T  N  Y  I  M  L  L  *  *  I  T  S  G  K  L  F  V  I  *  M  E  M  K  *  N  D  F  F  D  H  L  Q   </first_frame>
            <second_frame>  G  R  F  K  D  A  I  N  V  F  N  S  M  G  E  K  R  C  R  P  D  T  L  S  Y  N  N  L  I  E  Q  L  C  K  N  D  L  L  G  E  A  E  E  L  Y  K  D  M  G  E  K  G  V  S  P  D  E  F  T  F  V  L  L  M  D  T  C  F  K  E  S  R  P  D  D  A  A  A  Y  F  K  T  M  V  E  S  K  L  R  P  N  L  G  V  Y  D  R  L  V  D  G  L  V  K  V  G  K  V  D  E  A  K  S  F  F  D  L  M  M  G  K  L  R  M  N  D  D  S  Y  K  F  M  M  N  A  L  F  D  I  G  Q  H  D  E  V  L  K  I  V  D  R  M  L  R  E  D  P  A  D  F  S  D  E  L  Q  E  F  V  R  E  A  L  A  K  E  G  R  D  E  E  L  T  K  L  M  D  D  I  E  R  E  K  K  E  A  A  D  R  E  A  E  A  A  E  K  A  K  A  S  A  R  A  A  V  S  S  L  I  N  S  P  K  L  F  G  N  K  Q  P  E  E  Q  S  T  I  T  G  E  A  A  S  I  N  D  N  D  K  Q  E  E  V  S  V  Q  E  T  A  A  E  A  S  S  S  G  E  G  G  E  A  E  S  L  V  A  A  E  A  R  S  D  G  A  L  *  *  G  S  R  M  I  K  Y  V  G  *  Q  L  M  R  N  S  S  R  F  P  F  T  L  P  H  L  Q  A  R  T  I  *  C  S  Y  D  K  L  L  V  G  N  C  L  *  F  R  W  K  *  N  E  M  I  F  L  I  I  F  K  </second_frame>
            <third_frame>   E  G  S  K  T  Q  S  M  F  L  T  A  W  E  R  R  G  V  D  Q  T  H  C  L  T  I  I  *  L  S  S  C  A  K  M  T  C  W  V  R  L  R  S  S  I  R  I  W  A  K  K  G  S  A  L  M  S  S  R  L  F  C  *  W  I  L  A  L  K  K  V  G  L  M  T  L  L  R  I  L  R  P  W  W  S  L  N  *  G  L  I  L  E  F  M  I  G  W  L  M  V  W  S  K  L  V  K  L  M  K  Q  N  H  F  L  I  *  *  W  E  S  S  G  *  M  M  I  A  T  S  L  *  *  T  H  C  L  I  L  G  S  M  M  R  C  L  R  L  W  I  E  C  *  G  R  I  Q  L  I  S  L  M  S  C  K  S  L  F  E  K  P  W  R  R  K  V  E  M  R  S  *  P  N  L  W  M  I  L  K  G  R  R  K  K  L  L  T  G  R  L  K  Q  L  K  K  R  R  P  V  Q  E  L  L  F  P  L  *  *  I  V  L  N  C  L  E  I  S  S  L  K  S  S  Q  Q  L  L  V  R  L  P  A  S  T  T  M  T  N  K  R  R  *  V  F  K  K  L  L  R  R  L  V  P  L  V  R  V  E  K  L  R  A  L  L  L  Q  K  L  E  V  M  V  H  F  D  E  V  A  E  *  *  N  M  L  G  D  N  *  *  E  T  V  V  G  F  L  S  L  C  H  T  C  K  H  E  L  Y  N  A  L  M  I  N  Y  *  W  E  I  V  C  N  L  D  G  N  E  M  K  *  F  F  *  S  S  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77317" stop="76466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRFKDAINVFNSMGEKRCRPDTLSYNNLIEQLCKNDLLGEAEELYKDMGEKGVSPDEFTFVLLMDTCFKESRPDDAAAYFKTMVESKLRPNLGVYDRLVDGLVKVGKVDEAKSFFDLMMGKLRMNDDSYKFMMNALFDIGQHDEVLKIVDRMLREDPADFSDELQEFVREALAKEGRDEELTKLMDDIEREKKEAADREAEAAEKAKASARAAVSSLINSPKLFGNKQPEEQSTITGEAASINDNDKQEEVSVQETAAEASSSGEGGEAESLVAAEARSDGAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="78431" PGL_stop="77700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78431" e_stop="77700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="78431" e_stop="77700" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78431" stop="77700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGAGATGGCTCTCTCCAAGCACATCTTTTTAACCCATCACCTCAGAACCTTAGCTAAACCCCATTATCTCCGCCACCCTCAACCACCACCTTCCTTCATTTCCCTCCGTCTCCTTTCATTTGCCACTCCGGAAGAAGCTGCCGCTGAACGCCGTAAACGCAAACGCCGACTCCGTATTGAACCCCCTTTATCATCCCTCCGTCAGCAACATCAACCTCGTCCCACTACACCTCAAAACCCTAGCTCCACTAATAACCCGAATGCACCGAAGATTCCCGAAACTGTTTCTGTACTATCCGGTAATAGACTTAATCTGCATAATCGGATTCTTAAACTCATTCGTGAGAATGATTTGGATGAAGCTGCTTTGTACACGCGGCACTCTGTTTACTCTAATTGCCGCCCTACTATCTTTACTTGCAACGCTGTAATGGCTGCGCAACTCCGGCAGTCCAGATATTCTGATCTACTTTCTCTTCACCGGTTCATCACGCAGGCTGGTATTGGGGCTAATATTGTCACACATAATTTGCTCCTCACGGCTTTTATGGATTGCCGGAAAACTGATATGGCTATGGAACATTACAAGCAGCTCATCAATAATGCACCTTTTAACCCTTCCCCGACTACGTATCGGATACTTATTAAAGGACTTGTTGATAACAACAAGATTGATAGGGCGATGGAGTTGAAGGAGGAAATGTTGTCCAAAGGGCTTAGTGCTGATCC</gDNA_template>
            <first_frame> I  R  D  G  S  L  Q  A  H  L  F  N  P  S  P  Q  N  L  S  *  T  P  L  S  P  P  P  S  T  T  T  F  L  H  F  P  P  S  P  F  I  C  H  S  G  R  S  C  R  *  T  P  *  T  Q  T  P  T  P  Y  *  T  P  F  I  I  P  P  S  A  T  S  T  S  S  H  Y  T  S  K  P  *  L  H  *  *  P  E  C  T  E  D  S  R  N  C  F  C  T  I  R  *  *  T  *  S  A  *  S  D  S  *  T  H  S  *  E  *  F  G  *  S  C  F  V  H  A  A  L  C  L  L  *  L  P  P  Y  Y  L  Y  L  Q  R  C  N  G  C  A  T  P  A  V  Q  I  F  *  S  T  F  S  S  P  V  H  H  A  G  W  Y  W  G  *  Y  C  H  T  *  F  A  P  H  G  F  Y  G  L  P  E  N  *  Y  G  Y  G  T  L  Q  A  A  H  Q  *  C  T  F  *  P  F  P  D  Y  V  S  D  T  Y  *  R  T  C  *  *  Q  Q  D  *  *  G  D  G  V  E  G  G  N  V  V  Q  R  A  *  C  *  S </first_frame>
            <second_frame>  F  E  M  A  L  S  K  H  I  F  L  T  H  H  L  R  T  L  A  K  P  H  Y  L  R  H  P  Q  P  P  P  S  F  I  S  L  R  L  L  S  F  A  T  P  E  E  A  A  A  E  R  R  K  R  K  R  R  L  R  I  E  P  P  L  S  S  L  R  Q  Q  H  Q  P  R  P  T  T  P  Q  N  P  S  S  T  N  N  P  N  A  P  K  I  P  E  T  V  S  V  L  S  G  N  R  L  N  L  H  N  R  I  L  K  L  I  R  E  N  D  L  D  E  A  A  L  Y  T  R  H  S  V  Y  S  N  C  R  P  T  I  F  T  C  N  A  V  M  A  A  Q  L  R  Q  S  R  Y  S  D  L  L  S  L  H  R  F  I  T  Q  A  G  I  G  A  N  I  V  T  H  N  L  L  L  T  A  F  M  D  C  R  K  T  D  M  A  M  E  H  Y  K  Q  L  I  N  N  A  P  F  N  P  S  P  T  T  Y  R  I  L  I  K  G  L  V  D  N  N  K  I  D  R  A  M  E  L  K  E  E  M  L  S  K  G  L  S  A  D   </second_frame>
            <third_frame>   S  R  W  L  S  P  S  T  S  F  *  P  I  T  S  E  P  *  L  N  P  I  I  S  A  T  L  N  H  H  L  P  S  F  P  S  V  S  F  H  L  P  L  R  K  K  L  P  L  N  A  V  N  A  N  A  D  S  V  L  N  P  L  Y  H  P  S  V  S  N  I  N  L  V  P  L  H  L  K  T  L  A  P  L  I  T  R  M  H  R  R  F  P  K  L  F  L  Y  Y  P  V  I  D  L  I  C  I  I  G  F  L  N  S  F  V  R  M  I  W  M  K  L  L  C  T  R  G  T  L  F  T  L  I  A  A  L  L  S  L  L  A  T  L  *  W  L  R  N  S  G  S  P  D  I  L  I  Y  F  L  F  T  G  S  S  R  R  L  V  L  G  L  I  L  S  H  I  I  C  S  S  R  L  L  W  I  A  G  K  L  I  W  L  W  N  I  T  S  S  S  S  I  M  H  L  L  T  L  P  R  L  R  I  G  Y  L  L  K  D  L  L  I  T  T  R  L  I  G  R  W  S  *  R  R  K  C  C  P  K  G  L  V  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78430" stop="77702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEMALSKHIFLTHHLRTLAKPHYLRHPQPPPSFISLRLLSFATPEEAAAERRKRKRRLRIEPPLSSLRQQHQPRPTTPQNPSSTNNPNAPKIPETVSVLSGNRLNLHNRILKLIRENDLDEAALYTRHSVYSNCRPTIFTCNAVMAAQLRQSRYSDLLSLHRFITQAGIGANIVTHNLLLTAFMDCRKTDMAMEHYKQLINNAPFNPSPTTYRILIKGLVDNNKIDRAMELKEEMLSKGLSAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="81148" PGL_stop="84043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81148" e_stop="81316"/>
            <exon e_start="82857" e_stop="83148"/>
            <exon e_start="83545" e_stop="83610"/>
            <exon e_start="83769" e_stop="84043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.566" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.795" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81148" e_stop="81316" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.566">
            <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82857" e_stop="83148" e_length="292"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83545" e_stop="83610" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.795">
            <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83769" e_stop="84043" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81148" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGG : AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT : TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG : GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAGGTTGCTATG</gDNA_template>
            <first_frame> L  Y  L  V  P  K  C  G  I  C  I  C  T  V  Y  L  G  *  G  F  M  E  S  I  V  D  S  I  Y  L  T  K  F  R  V  L  L  L  R  G  T  G  S  R  V  F  G  I  P  I  L  L  E  K  C  R   : E  R  M  L  L  L  L  L  P  R  L  L  L  H  H  L  E  S  P  W  T  S  *  L  L  C  S  W  C  *  G  S  L  R  L  M  E  A  S  L  G  D  Y  M  K  V  Q  R  *  L  R  S  M  L  H  S  F  V  C  *  Q  R  T  V  T  S  Q  I  M  S  N  W  S  K  R  S  V  L  I  T  M  S  V  *  L  R  F  R  M  Q  K  L  L  A  N  G  L  V :   C  V  R  L  I  L  K  G  K  Q  G  R  W  S  A  V  A  V  L  L  *  R :   I  T  E  K  R  L  R  V  C  I  L  S  K  S  T  *  S  P  I  K  F  A  V  H  M  K  E  D  L  F  P  P  Y  Q  N  D  N  P  E  D  I  S  S  A  D  D  F  Q  F  L  R  L  G  *  N  Y  *  T  *  H  R  K  T  L  S  V  V  L  L  L  C  *  L  Q  K  E  L  N  T  Q  L  E  I  A  G  F  I  L  G  C  Y  </first_frame>
            <second_frame>  C  I  W  Y  P  N  V  G  S  A  Y  A  R  Y  I  W  D  E  G  L  W  S  L  L  L  I  L  F  T  *  L  N  S  V  F  Y  F  *  E  E  Q  V  A  E  F  L  V  Y  Q  Y  C  W  K  N  V  G  :  R  G  C  C  C  C  C  C  R  G  S  C  S  I  T  W  R  A  H  G  H  H  D  C  F  A  A  G  A  E  E  V  *  G  S  W  R  P  L  S  G  T  T  *  R  C  K  G  D  *  E  A  C  C  T  A  L  C  V  S  R  G  L  *  P  A  R  L  C  Q  I  G  Q  S  A  L  C  *  S  Q  C  Q  F  D  Y  G  S  E  C  K  N  S  W  R  M  G  W   : F  V  *  D  *  F  *  R  E  S  K  E  G  G  R  L  W  L  C  C  C  E   : G  L  R  R  R  D  *  G  S  A  Y  C  P  R  V  R  E  V  P  L  N  S  R  C  I  *  R  K  T  S  S  L  P  T  K  M  I  I  Q  K  T  L  V  L  Q  M  I  F  S  F  *  D  *  V  E  T  I  K  P  S  I  G  K  L  S  L  L  F  F  Y  F  V  D  F  K  R  N  *  I  L  N  W  K  L  Q  V  L  F  *  V  A  M </second_frame>
            <third_frame>   V  F  G  T  Q  M  W  D  L  H  M  H  G  I  F  G  M  R  V  Y  G  V  Y  C  *  F  Y  L  P  N  *  I  P  C  F  T  F  E  R  N  R  *  Q  S  F  W  Y  T  N  I  A  G  K  M  S  G :   E  D  V  A  V  A  V  A  E  A  P  A  P  S  L  G  E  P  M  D  I  M  T  A  L  Q  L  V  L  R  K  S  K  A  H  G  G  L  S  R  G  L  H  E  G  A  K  V  I  E  K  H  A  A  Q  L  C  V  L  A  E  D  C  D  Q  P  D  Y  V  K  L  V  K  A  L  C  A  D  H  N  V  S  L  I  T  V  P  N  A  K  T  L  G  E  W  A  G  :  L  C  K  I  D  S  E  G  K  A  R  K  V  V  G  C  G  C  V  V  V  K  :  D  Y  G  E  E  T  E  G  L  H  I  V  Q  E  Y  V  K  S  H  *  I  R  G  A  Y  E  G  R  P  L  P  S  L  P  K  *  *  S  R  R  H  *  F  C  R  *  F  S  V  F  K  I  R  L  K  L  L  N  L  A  S  E  N  S  L  C  C  S  F  T  L  L  T  S  K  G  I  K  Y  S  I  G  N  C  R  F  Y  F  R  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81276" stop="81316"/>
                    <exon start="82857" stop="83148"/>
                    <exon start="83545" stop="83610"/>
                    <exon start="83769" stop="83828"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSFWYTNIAGKMSGEDVAVAVAEAPAPSLGEPMDIMTALQLVLRKSKAHGGLSRGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCADHNVSLITVPNAKTLGEWAGLCKIDSEGKARKVVGCGCVVVKDYGEETEGLHIVQEYVKSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81148" e_stop="81741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="81148" e_stop="81741" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81148" stop="81741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTT</gDNA_template>
            <first_frame> L  Y  L  V  P  K  C  G  I  C  I  C  T  V  Y  L  G  *  G  F  M  E  S  I  V  D  S  I  Y  L  T  K  F  R  V  L  L  L  R  G  T  G  S  R  V  F  G  I  P  I  L  L  E  K  C  R  G  K  *  N  S  V  N  F  I  V  K  F  S  L  F  T  *  L  *  V  L  L  S  M  S  F  S  V  V  M  S  W  R  P  V  S  *  S  A  L  P  V  V  F  A  T  W  C  V  I  M  F  V  C  V  V  V  C  C  Y  L  S  A  I  *  T  I  H  L  Q  L  H  S  Y  V  C  E  E  P  L  V  W  L  *  I  C  M  P  M  *  G  I  S  V  L  F  S  E  S  L  L  S  G  S  S  L  Q  I  I  E  Y  *  N  Y  L  G  L  S  I  V  E  S  I  Y  W  D  S  *  L  I  V  V  H  K  T  L  Y  D  R  V  M  F </first_frame>
            <second_frame>  C  I  W  Y  P  N  V  G  S  A  Y  A  R  Y  I  W  D  E  G  L  W  S  L  L  L  I  L  F  T  *  L  N  S  V  F  Y  F  *  E  E  Q  V  A  E  F  L  V  Y  Q  Y  C  W  K  N  V  G  V  S  R  I  Q  L  I  L  L  S  N  S  V  C  L  L  D  C  K  C  C  C  R  C  R  F  R  L  *  *  A  G  D  Q  Y  L  D  Q  L  Y  Q  *  F  L  Q  L  G  V  *  L  C  L  C  V  *  *  S  V  V  I  *  V  L  F  E  L  F  I  Y  N  Y  I  P  M  F  A  R  S  H  *  F  G  Y  R  F  V  C  Q  C  R  E  *  V  C  C  L  V  N  R  F  F  Q  G  V  R  Y  K  L  L  S  I  R  T  I  W  V  *  V  *  W  N  R  Y  I  G  I  V  D  *  L  *  Y  T  R  L  C  T  I  V  S  C   </second_frame>
            <third_frame>   V  F  G  T  Q  M  W  D  L  H  M  H  G  I  F  G  M  R  V  Y  G  V  Y  C  *  F  Y  L  P  N  *  I  P  C  F  T  F  E  R  N  R  *  Q  S  F  W  Y  T  N  I  A  G  K  M  S  G  *  V  E  F  S  *  F  Y  C  Q  I  Q  F  V  Y  L  T  V  S  V  A  V  D  V  V  F  G  C  N  E  L  E  T  S  I  L  I  S  F  T  S  S  F  C  N  L  V  C  D  Y  V  C  V  C  S  S  L  L  L  F  E  C  Y  L  N  Y  S  F  T  I  T  F  L  C  L  R  G  A  I  S  L  V  I  D  L  Y  A  N  V  G  N  K  C  A  V  *  *  I  A  S  F  R  E  F  V  T  N  Y  *  V  L  E  L  S  G  S  K  Y  S  G  I  D  I  L  G  *  L  I  D  C  S  T  Q  D  F  V  R  S  C  H  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81336" stop="81605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYCQIQFVYLTVSVAVDVVFGCNELETSILISFTSSFCNLVCDYVCVCSSLLLFECYLNYSFTITFLCLRGAISLVIDLYANVGNKCAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="86221" PGL_stop="84169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86221" e_stop="85936"/>
            <exon e_start="85377" e_stop="85312"/>
            <exon e_start="84776" e_stop="84229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86221" e_stop="85936" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85377" e_stop="85312" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84776" e_stop="84229" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86221" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563433" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTACTACTTCAAAATTTCTAAGATTTAATGCTTTTTGATAGCATGAATTAATTTGAACTTGTGGTCTCTGTTAATTTGACCATTGCAAATTTCTGATAAAAATAAGAAAAAGGAAGTTAGGTTTCAACCAACAATGAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG : GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG : GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGAT</gDNA_template>
            <first_frame> D  L  L  L  Q  N  F  *  D  L  M  L  F  D  S  M  N  *  F  E  L  V  V  S  V  N  L  T  I  A  N  F  *  *  K  *  E  K  G  S  *  V  S  T  N  N  E  *  R  S  K  C  W  R  R  R  T  N  C  C  R  G  R  R  R  S  S  K  A  E  E  L  T  A  E  G  G  C  *  Y  W  E  Y  C  *  Q  L  W  L  H  C  *  R  C  T   : G  Q  *  S  T  S  P  K  F  A  R  S  I  Y  D  G  D  A  C  I  *  D   : G  P  C  S  *  F  T  A  *  V  G  V  G  V  E  T  N  S  H  V  F  R  V  C  I  S  K  R  S  C  G  A  E  N  R  R  I  Y  R  T  G  *  E  N  R  M  H  V  I  *  N  W  R  G  G  S  C  *  P  *  G  A  *  V  T  L  L  F  F  C  R  K  N  Q  *  S  A  F  L  Q  P  R  N  N  A  L  T  M  A  T  I  T  F  F  F  P  I  G  F  S  S  Y  *  V  Y  L  S  T  L  K  V  V  T  G  Q  T  I  *  *  *  E  I  Q  F  G  P  N  L  L  L  Q  G  L  I  N  S  V  F  V  V  T  N  Q  L  H  S  S  *  E  K  Y  E  T  P  V  I  V  E  V  P  I  L  L  L  F  *  R  F  H  S  I  A  Y  H  I  C  H  T  M  D  T  A  D </first_frame>
            <second_frame>  I  Y  Y  F  K  I  S  K  I  *  C  F  L  I  A  *  I  N  L  N  L  W  S  L  L  I  *  P  L  Q  I  S  D  K  N  K  K  K  E  V  R  F  Q  P  T  M  N  K  G  A  N  V  G  G  G  G  P  T  A  A  A  A  A  A  A  A  Q  K  Q  K  S  L  L  Q  R  V  D  A  D  I  G  N  I  V  D  N  Y  G  F  I  V  N  A  A  R  :  V  N  D  P  P  V  R  N  S  Q  E  A  F  M  M  E  M  R  A  S  R  M  :  V  H  A  A  D  S  L  L  K  L  V  S  E  L  K  Q  T  A  M  F  S  G  F  A  S  L  N  D  H  V  E  Q  R  T  E  E  F  T  E  Q  A  E  K  T  E  C  M  L  S  R  I  G  E  E  A  A  A  S  L  K  E  L  E  S  H  Y  Y  S  S  A  E  R  T  S  S  L  P  S  Y  S  Q  E  T  M  P  *  P  W  L  Q  S  P  S  S  F  P  L  V  S  P  L  T  K  Y  I  C  L  P  *  R  *  *  L  D  K  Q  S  N  D  E  K  S  N  L  V  P  T  Y  Y  Y  K  A  S  L  T  Q  Y  L  L  *  Q  I  N  C  I  L  A  K  K  N  M  K  H  Q  L  *  W  R  Y  Q  F  Y  C  Y  F  E  D  F  T  L  *  L  I  I  Y  V  T  P  W  T  L  L   </second_frame>
            <third_frame>   F  T  T  S  K  F  L  R  F  N  A  F  *  *  H  E  L  I  *  T  C  G  L  C  *  F  D  H  C  K  F  L  I  K  I  R  K  R  K  L  G  F  N  Q  Q  *  I  K  E  Q  M  L  E  A  A  D  Q  L  L  P  R  P  P  P  Q  L  K  S  R  R  A  Y  C  R  G  W  M  L  I  L  G  I  L  L  T  I  M  A  S  L  L  T  L  H  G :   S  M  I  H  Q  S  E  I  R  K  K  H  L  *  W  R  C  V  H  L  G  W :   S  M  Q  L  I  H  C  L  S  W  C  R  S  *  N  K  Q  P  C  F  Q  G  L  H  L  *  T  I  M  W  S  R  E  Q  K  N  L  P  N  R  L  R  K  Q  N  A  C  Y  L  E  L  E  R  R  Q  L  L  A  L  R  S  L  S  H  I  I  I  L  L  Q  K  E  P  V  V  C  L  L  T  A  K  K  Q  C  P  N  H  G  Y  N  H  L  L  L  S  H  W  F  L  L  L  L  S  I  F  V  Y  L  E  G  S  N  W  T  N  N  L  M  M  R  N  P  I  W  S  Q  L  T  T  T  R  P  H  *  L  S  I  C  C  N  K  S  T  A  F  *  L  R  K  I  *  N  T  S  Y  S  G  G  T  N  F  T  A  I  L  K  I  S  L  Y  S  L  S  Y  M  S  H  H  G  H  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86139" stop="85936"/>
                    <exon start="85377" stop="85312"/>
                    <exon start="84776" stop="84519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLQISDKNKKKEVRFQPTMNKGANVGGGGPTAAAAAAAAQKQKSLLQRVDADIGNIVDNYGFIVNAARVNDPPVRNSQEAFMMEMRASRMVHAADSLLKLVSELKQTAMFSGFASLNDHVEQRTEEFTEQAEKTECMLSRIGEEAAASLKELESHYYSSAERTSSLPSYSQETMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86029" e_stop="85936"/>
            <exon e_start="85377" e_stop="85312"/>
            <exon e_start="84776" e_stop="84439"/>
            <exon e_start="84179" e_stop="84169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.454" e_score="0.929"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86029" e_stop="85936" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85377" e_stop="85312" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="84776" e_stop="84439" e_length="338"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.454">
            <gDNA_intron_boundary i_start="84438" i_stop="84180" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="0.818">
            <gDNA_exon_boundary e_start="84179" e_stop="84169" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86029" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84439"/>
              <exon start="84179" stop="84169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG : GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG : GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACT : CATACTGTTAG</gDNA_template>
            <first_frame> R  S  S  K  A  E  E  L  T  A  E  G  G  C  *  Y  W  E  Y  C  *  Q  L  W  L  H  C  *  R  C  T   : G  Q  *  S  T  S  P  K  F  A  R  S  I  Y  D  G  D  A  C  I  *  D   : G  P  C  S  *  F  T  A  *  V  G  V  G  V  E  T  N  S  H  V  F  R  V  C  I  S  K  R  S  C  G  A  E  N  R  R  I  Y  R  T  G  *  E  N  R  M  H  V  I  *  N  W  R  G  G  S  C  *  P  *  G  A  *  V  T  L  L  F  F  C  R  K  N  Q  *  S  A  F  L  Q  P  R  N  N  A  L  T  M  A  T  I  T  F  F  F  P  I  G  F  S  S  Y  *  V  Y  L  S  T  L  K  V  V  T  :  H  T  V   </first_frame>
            <second_frame>  A  A  Q  K  Q  K  S  L  L  Q  R  V  D  A  D  I  G  N  I  V  D  N  Y  G  F  I  V  N  A  A  R  :  V  N  D  P  P  V  R  N  S  Q  E  A  F  M  M  E  M  R  A  S  R  M  :  V  H  A  A  D  S  L  L  K  L  V  S  E  L  K  Q  T  A  M  F  S  G  F  A  S  L  N  D  H  V  E  Q  R  T  E  E  F  T  E  Q  A  E  K  T  E  C  M  L  S  R  I  G  E  E  A  A  A  S  L  K  E  L  E  S  H  Y  Y  S  S  A  E  R  T  S  S  L  P  S  Y  S  Q  E  T  M  P  *  P  W  L  Q  S  P  S  S  F  P  L  V  S  P  L  T  K  Y  I  C  L  P  *  R  *  *  L :   I  L  L  </second_frame>
            <third_frame>   Q  L  K  S  R  R  A  Y  C  R  G  W  M  L  I  L  G  I  L  L  T  I  M  A  S  L  L  T  L  H  G :   S  M  I  H  Q  S  E  I  R  K  K  H  L  *  W  R  C  V  H  L  G  W :   S  M  Q  L  I  H  C  L  S  W  C  R  S  *  N  K  Q  P  C  F  Q  G  L  H  L  *  T  I  M  W  S  R  E  Q  K  N  L  P  N  R  L  R  K  Q  N  A  C  Y  L  E  L  E  R  R  Q  L  L  A  L  R  S  L  S  H  I  I  I  L  L  Q  K  E  P  V  V  C  L  L  T  A  K  K  Q  C  P  N  H  G  Y  N  H  L  L  L  S  H  W  F  L  L  L  L  S  I  F  V  Y  L  E  G  S  N   : S  Y  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86028" stop="85936"/>
                    <exon start="85377" stop="85312"/>
                    <exon start="84776" stop="84519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAQKQKSLLQRVDADIGNIVDNYGFIVNAARVNDPPVRNSQEAFMMEMRASRMVHAADSLLKLVSELKQTAMFSGFASLNDHVEQRTEEFTEQAEKTECMLSRIGEEAAASLKELESHYYSSAERTSSLPSYSQETMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="84399" PGL_stop="84601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84399" e_stop="84601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="84399" e_stop="84601" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84399" stop="84601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGACCAAATTGGATTTCTCATCATTAGATTGTTTGTCCAGTTACTACCTTCAAGGTAGACAAATATACTTAGTAAGAGGAGAAACCAATGGGAAAGAAGAAGGTGATTGTAGCCATGGTTAGGGCATTGTTTCTTGGCTGTAAGAAGGCAGACTACTGGTTCTTTCTGCAGAAGAATAATAATGTGACTCAAGCTCCTTAA</gDNA_template>
            <first_frame> W  D  Q  I  G  F  L  I  I  R  L  F  V  Q  L  L  P  S  R  *  T  N  I  L  S  K  R  R  N  Q  W  E  R  R  R  *  L  *  P  W  L  G  H  C  F  L  A  V  R  R  Q  T  T  G  S  F  C  R  R  I  I  M  *  L  K  L  L   </first_frame>
            <second_frame>  G  T  K  L  D  F  S  S  L  D  C  L  S  S  Y  Y  L  Q  G  R  Q  I  Y  L  V  R  G  E  T  N  G  K  E  E  G  D  C  S  H  G  *  G  I  V  S  W  L  *  E  G  R  L  L  V  L  S  A  E  E  *  *  C  D  S  S  S  L  </second_frame>
            <third_frame>   G  P  N  W  I  S  H  H  *  I  V  C  P  V  T  T  F  K  V  D  K  Y  T  *  *  E  E  K  P  M  G  K  K  K  V  I  V  A  M  V  R  A  L  F  L  G  C  K  K  A  D  Y  W  F  F  L  Q  K  N  N  N  V  T  Q  A  P  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0031P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="94612" PGL_stop="86534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94612" e_stop="94373"/>
            <exon e_start="93147" e_stop="93089"/>
            <exon e_start="92919" e_stop="92720"/>
            <exon e_start="90640" e_stop="90551"/>
            <exon e_start="88300" e_stop="88157"/>
            <exon e_start="87432" e_stop="86534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94612" e_stop="94373" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="94372" i_stop="93148" i_length="1225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93147" e_stop="93089" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93088" i_stop="92920" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92919" e_stop="92720" e_length="200"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="92719" i_stop="90641" i_length="2079"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90640" e_stop="90551" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="90550" i_stop="88301" i_length="2250"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88300" e_stop="88157" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88156" i_stop="87433" i_length="724"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="87432" e_stop="86534" e_length="899"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94612" stop="94373"/>
              <exon start="93147" stop="93089"/>
              <exon start="92919" stop="92720"/>
              <exon start="90640" stop="90551"/>
              <exon start="88300" stop="88157"/>
              <exon start="87432" stop="86534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGCCTCTACAATGGCGGATTCACTTCTCTCCATTAACTTGTCAGAACCCAAAATCAACAATAAATTTCCCCGCAAACATTGAACTCAAACCCTAACCCTAATCGTGAAAATTCATCTAATAAATTGCAGTTCACCGGTTGACGAGGAGATGGAAACTCACATGTCTCATCATCATCAGTATGAAAGACGACCCATATACAAGTCCAAAGCTCCTGCTTCCAAATGGTTTAAGGAATG : GGTCCCACAAGATGTTGTAGCAACTGGTGGGAAGTGCTACGTCTTAAAGTGGGTGAATG : AGGCCACATTAAAAGCTCTGAGGGAGAAGCCAAAAGAGGCAGGAGTACCTGTGTCAGAACCAGAGCCAACTACTGAAGTTCTTTTTCTTTGTAGCTATGAAGGTTGTGGAAAGACATTTATTGATGCTGGGGCCTTGAGGAAGCATTCTCACATCCACGGGGAGAGGCAGTATGTATGCCACTATGAGGGTTGTGGAAAG : AAATTCTTGGATAGTTCCAAGCTAAAACGACACTTTCTTATTCACACTGGAGAAAGAGACTATGTGTGTCCACATGAAGGCTGTGGTAAG : GCATTCTCACTGGATTTTAACTTAAGATCACACATGAAAACACACTCCCAGGAGAACTATCATATTTGCCCGTATCCAGAATGTGGAAAGCGATATGCACATGAGTACAAGCTTAAAAATCATATTTCATCTACTCACCAGAAG : AACAACACACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCCTCTCACCTAGCTCCATGGAACATGGAGATTTGCAGAACACTCTGAGCTTCTTATTCATTTTTATTCCATAAAAACAAACTGACATCTCTTATTACTATTATTATTATGTATAAATTTGACCATTTCGAGGACTTGAGATCCATAATTTGTTATATATAATTCAAACAATTA</gDNA_template>
            <first_frame> K  S  L  Y  N  G  G  F  T  S  L  H  *  L  V  R  T  Q  N  Q  Q  *  I  S  P  Q  T  L  N  S  N  P  N  P  N  R  E  N  S  S  N  K  L  Q  F  T  G  *  R  G  D  G  N  S  H  V  S  S  S  S  V  *  K  T  T  H  I  Q  V  Q  S  S  C  F  Q  M  V  *  G  M  :  G  P  T  R  C  C  S  N  W  W  E  V  L  R  L  K  V  G  E  * :   G  H  I  K  S  S  E  G  E  A  K  R  G  R  S  T  C  V  R  T  R  A  N  Y  *  S  S  F  S  L  *  L  *  R  L  W  K  D  I  Y  *  C  W  G  L  E  E  A  F  S  H  P  R  G  E  A  V  C  M  P  L  *  G  L  W  K   : E  I  L  G  *  F  Q  A  K  T  T  L  S  Y  S  H  W  R  K  R  L  C  V  S  T  *  R  L  W  *   : G  I  L  T  G  F  *  L  K  I  T  H  E  N  T  L  P  G  E  L  S  Y  L  P  V  S  R  M  W  K  A  I  C  T  *  V  Q  A  *  K  S  Y  F  I  Y  S  P  E   : E  Q  H  T  R  C  T  C  T  S  T  S  T  C  S  C  T  K  V  Y  P  A  C  G  E  A  S  E  D  S  E  I  F  F  S  S  L  W  L  I  I  I  *  P  S  L  Q  L  S  I  R  R  L  *  Q  I  L  H  P  *  V  Q  A  E  S  S  F  E  E  H  A  P  W  S  F  P  R  G  E  R  E  K  C  S  I  H  C  *  Q  *  D  R  *  R  Q  *  S  G  R  I  C  C  K  T  W  K  R  K  K  S  E  T  E  Q  T  K  T  K  L  K  A  A  A  F  E  S  C  T  Q  K  L  I  *  C  C  S  S  Q  S  N  Y  I  E  E  T  L  A  G  *  R  R  E  L  Q  *  R  R  *  *  R  N  R  G  G  A  G  *  C  W  R  W  M  E  V  W  *  K  R  *  R  R  *  R  D  *  R  R  *  L  G  L  Y  V  I  H  T  H  R  *  L  S  S  T  L  C  F  G  I  *  M  V  V  I  V  *  K  M  G  L  V  L  A  C  *  C  L  F  V  F  Y  E  K  H  E  A  L  A  V  S  *  T  P  P  S  H  L  A  P  W  N  M  E  I  C  R  T  L  *  A  S  Y  S  F  L  F  H  K  N  K  L  T  S  L  I  T  I  I  I  M  Y  K  F  D  H  F  E  D  L  R  S  I  I  C  Y  I  *  F  K  Q  L </first_frame>
            <second_frame>  R  A  S  T  M  A  D  S  L  L  S  I  N  L  S  E  P  K  I  N  N  K  F  P  R  K  H  *  T  Q  T  L  T  L  I  V  K  I  H  L  I  N  C  S  S  P  V  D  E  E  M  E  T  H  M  S  H  H  H  Q  Y  E  R  R  P  I  Y  K  S  K  A  P  A  S  K  W  F  K  E  W :   V  P  Q  D  V  V  A  T  G  G  K  C  Y  V  L  K  W  V  N   : E  A  T  L  K  A  L  R  E  K  P  K  E  A  G  V  P  V  S  E  P  E  P  T  T  E  V  L  F  L  C  S  Y  E  G  C  G  K  T  F  I  D  A  G  A  L  R  K  H  S  H  I  H  G  E  R  Q  Y  V  C  H  Y  E  G  C  G  K  :  K  F  L  D  S  S  K  L  K  R  H  F  L  I  H  T  G  E  R  D  Y  V  C  P  H  E  G  C  G  K  :  A  F  S  L  D  F  N  L  R  S  H  M  K  T  H  S  Q  E  N  Y  H  I  C  P  Y  P  E  C  G  K  R  Y  A  H  E  Y  K  L  K  N  H  I  S  S  T  H  Q  K  :  N  N  T  P  D  A  H  A  H  P  H  P  H  A  H  A  P  K  Y  T  P  P  V  E  K  P  V  K  T  P  K  S  S  S  A  A  Y  G  S  S  S  S  D  R  P  Y  S  C  P  Y  E  G  C  D  K  S  Y  I  H  E  Y  K  L  N  L  H  L  R  N  M  H  P  G  H  F  P  E  E  N  A  R  N  V  Q  S  T  A  D  N  E  I  D  E  G  S  D  Q  D  A  Y  A  A  R  R  G  N  G  R  S  Q  K  Q  S  R  P  K  P  S  L  K  Q  P  P  L  K  V  A  R  K  S  S  S  S  A  A  Q  A  N  L  I  I  S  K  K  P  W  P  V  K  E  E  N  F  N  E  E  D  S  E  E  T  E  E  E  R  D  D  V  G  D  G  W  R  Y  G  E  N  D  D  D  D  E  E  T  E  E  D  D  *  A  Y  M  S  Y  I  L  I  G  S  *  V  V  H  Y  V  L  G  Y  K  W  L  S  L  S  R  K  W  D  W  S  L  L  V  N  A  F  L  C  F  M  K  S  M  R  L  *  L  F  P  K  P  H  P  L  T  *  L  H  G  T  W  R  F  A  E  H  S  E  L  L  I  H  F  Y  S  I  K  T  N  *  H  L  L  L  L  L  L  L  C  I  N  L  T  I  S  R  T  *  D  P  *  F  V  I  Y  N  S  N  N   </second_frame>
            <third_frame>   E  P  L  Q  W  R  I  H  F  S  P  L  T  C  Q  N  P  K  S  T  I  N  F  P  A  N  I  E  L  K  P  *  P  *  S  *  K  F  I  *  *  I  A  V  H  R  L  T  R  R  W  K  L  T  C  L  I  I  I  S  M  K  D  D  P  Y  T  S  P  K  L  L  L  P  N  G  L  R  N   : G  S  H  K  M  L  *  Q  L  V  G  S  A  T  S  *  S  G  *  M  :  R  P  H  *  K  L  *  G  R  S  Q  K  R  Q  E  Y  L  C  Q  N  Q  S  Q  L  L  K  F  F  F  F  V  A  M  K  V  V  E  R  H  L  L  M  L  G  P  *  G  S  I  L  T  S  T  G  R  G  S  M  Y  A  T  M  R  V  V  E  R :   N  S  W  I  V  P  S  *  N  D  T  F  L  F  T  L  E  K  E  T  M  C  V  H  M  K  A  V  V  R :   H  S  H  W  I  L  T  *  D  H  T  *  K  H  T  P  R  R  T  I  I  F  A  R  I  Q  N  V  E  S  D  M  H  M  S  T  S  L  K  I  I  F  H  L  L  T  R  R :   T  T  H  Q  M  H  M  H  I  H  I  H  M  L  M  H  Q  S  I  P  R  L  W  R  S  Q  *  R  L  R  N  L  L  Q  Q  L  M  A  H  H  H  L  T  V  L  T  A  V  H  T  K  V  V  T  N  L  T  S  M  S  T  S  *  I  F  I  *  G  T  C  T  L  V  I  S  Q  R  R  T  R  E  M  F  N  P  L  L  T  M  R  *  M  K  A  V  I  R  T  H  M  L  Q  D  V  E  T  E  E  V  R  N  R  A  D  Q  N  Q  A  *  S  S  R  L  *  K  L  H  A  K  A  H  L  V  L  L  K  P  I  *  L  Y  R  R  N  L  G  R  L  K  K  R  T  S  M  K  K  I  V  K  K  Q  R  R  S  G  M  M  L  A  M  D  G  G  M  V  K  T  M  T  T  M  K  R  L  K  K  M  T  R  L  I  C  H  T  Y  S  *  V  V  K  *  Y  T  M  F  W  D  I  N  G  C  H  C  L  E  N  G  I  G  P  C  L  L  M  P  F  C  V  L  *  K  A  *  G  F  S  C  F  L  N  P  T  L  S  P  S  S  M  E  H  G  D  L  Q  N  T  L  S  F  L  F  I  F  I  P  *  K  Q  T  D  I  S  Y  Y  Y  Y  Y  Y  V  *  I  *  P  F  R  G  L  E  I  H  N  L  L  Y  I  I  Q  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94527" stop="94373"/>
                    <exon start="93147" stop="93089"/>
                    <exon start="92919" stop="92720"/>
                    <exon start="90640" stop="90551"/>
                    <exon start="88300" stop="88157"/>
                    <exon start="87432" stop="86866"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQTLTLIVKIHLINCSSPVDEEMETHMSHHHQYERRPIYKSKAPASKWFKEWVPQDVVATGGKCYVLKWVNEATLKALREKPKEAGVPVSEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPECGKRYAHEYKLKNHISSTHQKNNTPDAHAHPHPHAHAPKYTPPVEKPVKTPKSSSAAYGSSSSDRPYSCPYEGCDKSYIHEYKLNLHLRNMHPGHFPEENARNVQSTADNEIDEGSDQDAYAARRGNGRSQKQSRPKPSLKQPPLKVARKSSSSAAQANLIISKKPWPVKEENFNEEDSEETEEERDDVGDGWRYGENDDDDEETEEDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="100560" PGL_stop="103481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100560" e_stop="100851"/>
            <exon e_start="101015" e_stop="101167"/>
            <exon e_start="101797" e_stop="101879"/>
            <exon e_start="102036" e_stop="102095"/>
            <exon e_start="102277" e_stop="102385"/>
            <exon e_start="102494" e_stop="102546"/>
            <exon e_start="102640" e_stop="102720"/>
            <exon e_start="102817" e_stop="102929"/>
            <exon e_start="103097" e_stop="103481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.575" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.308" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100560" e_stop="100851" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.575">
            <gDNA_intron_boundary i_start="100852" i_stop="101014" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101015" e_stop="101167" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="101168" i_stop="101796" i_length="629"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101797" e_stop="101879" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.736">
            <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102036" e_stop="102095" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102277" e_stop="102385" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.766" acc_prob="0.975">
            <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102494" e_stop="102546" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.895" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102640" e_stop="102720" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.308" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="102817" e_stop="102929" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167"/>
          </intron>
          <exon e_serial="9" e_score="0.995">
            <gDNA_exon_boundary e_start="103097" e_stop="103481" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100560" stop="100851"/>
              <exon start="101015" stop="101167"/>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102929"/>
              <exon start="103097" stop="103481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102929"/>
              <exon start="103097" stop="103480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGTAATATGTTTTCTTTCAGAGCTATGGTATTTTAGGTCCATACATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTG : GAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTT : TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAG : GAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGG : ATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT : TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG : CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG : ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAA : GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACATGAATTTCAAATTTGAAATCCAAATTGCAATGA</gDNA_template>
            <first_frame> C  C  N  M  F  S  F  R  A  M  V  F  *  V  H  T  Y  *  *  L  Q  F  I  C  E  G  K  K  C  L  C  H  N  Y  I  S  L  H  C  Q  G  Y  K  *  I  S  C  E  N  R  M  V  *  C  C  *  R  Y  K  M  Q  I  L  K  *  R  A  I  A  I  *  S  *  K  L  *  S  I  C  S  S  I  L  V  F  I  L  F  *  V  S  D  N  I  R  C  P   : G  G  C  L  T  K  L  H  *  N  I  S  L  V  N  Q  H  F  I  E  F  G  L  L  M  G  C  F  P  S  K  I  C  R  F  S  T  P  G  Y  E  D  P  T  L  L  A  A  E  T  A   : F  T  V  S  E  V  E  A  L  Y  E  L  F  K  K  I  S  S  S  I  I  D  D  G  L  I  H  K  :  E  E  F  Q  L  A  I  F  K  N  Q  N  R  R  D  L  F  A  D  R  :  I  F  D  L  F  D  F  K  R  N  G  V  I  G  F  G  E  F  V  R  S  L  S  V  F  H  P  N  A  P  V  A  D  K  I  A   : F  A  F  R  L  Y  D  L  R  Q  T  G  Y  I  E  R  E  E  :  L  K  E  M  V  L  A  L  L  N  E  S  D  L  I  L  S  D  D  I  V  E  M  I  V  D  K  :  T  F  D  E  A  D  K  K  S  D  G  K  I  D  E  E  E  W  K  E  F  V  S  M  N  P  S  L  L  K  N  M  T  L  P  Y  L  K :   D  I  T  L  A  F  P  S  F  V  M  N  S  E  V  E  D  S  E  V  *  T  H  A  F  S  I  *  H  A  *  L  K  L  P  R  I  R  *  S  L  P  N  *  *  C  N  R  N  A  K  E  S  R  L  I  G  F  C  I  E  I  L  E  V  G  Y  T  R  L  M  Q  K  I  S  S  F  A  S  S  N  R  H  *  Q  D  V  L  L  L  K  Y  L  A  S  L  L  E  L  D  I  K  V  V  L  K  V  E  V  L  F  K  C  N  K  Q  T  *  I  S  N  L  K  S  K  L  Q  * </first_frame>
            <second_frame>  V  V  I  C  F  L  S  E  L  W  Y  F  R  S  I  H  I  S  N  S  S  L  F  V  R  E  K  N  V  Y  V  I  T  I  S  L  C  I  V  K  A  I  S  K  L  V  A  K  T  E  W  Y  S  A  A  E  D  I  R  C  R  F  *  S  E  G  Q  L  L  Y  R  A  R  S  F  D  P  F  V  L  L  F  L  F  L  S  Y  F  E  *  A  I  T  F  D  V  L  :  E  A  V  *  R  S  F  T  R  I  Y  R  *  L  T  N  I  L  L  N  L  V  F  *  W  A  A  F  P  Q  K  S  A  D  S  V  P  L  V  T  R  I  Q  H  C  W  L  L  R  P  L  :  L  R  *  V  K  L  K  H  Y  M  S  C  S  R  K  *  A  A  L  *  L  M  M  D  *  F  T  R :   K  N  F  S  W  Q  F  S  R  T  K  T  G  E  I  F  L  Q  T  G :   F  L  I  Y  L  I  S  S  A  T  E  *  L  D  L  E  N  L  S  D  H  *  V  Y  S  T  Q  M  H  Q  *  Q  I  K  L  H  :  L  H  S  D  Y  M  I  *  G  R  L  V  I  L  R  E  K  S :   *  K  R  W  F  W  R  C  *  M  S  Q  T  *  F  F  R  M  I  *  L  K  *  L  *  I  R :   H  L  M  K  Q  I  K  R  V  T  G  R  *  M  K  K  N  G  R  S  L  F  Q  *  I  P  L  F  *  R  I  *  P  F  H  I  S   : R  I  *  L  *  H  F  L  A  L  *  *  T  L  R  W  K  I  R  K  S  R  L  M  L  L  A  Y  N  T  R  S  *  N  S  H  V  S  G  N  L  F  R  T  S  D  A  T  E  M  Q  K  S  R  D  *  S  D  F  A  L  K  F  W  K  L  A  T  P  D  *  C  R  K  S  V  L  L  P  A  P  I  G  I  S  K  M  Y  Y  F  *  S  I  *  L  V  C  W  S  *  I  S  R  *  Y  *  K  S  K  F  C  S  N  V  I  N  K  H  E  F  Q  I  *  N  P  N  C  N   </second_frame>
            <third_frame>   L  *  Y  V  F  F  Q  S  Y  G  I  L  G  P  Y  I  L  V  T  P  V  Y  L  *  G  K  K  M  F  M  S  *  L  Y  L  F  A  L  S  R  L  *  V  N  *  L  R  K  Q  N  G  I  V  L  L  K  I  *  D  A  D  F  E  V  K  G  N  C  Y  I  E  L  E  A  L  I  H  L  F  F  Y  S  C  F  Y  L  I  L  S  K  R  *  H  S  M  S  W :   R  L  F  D  E  A  S  L  E  Y  I  V  S  *  P  T  F  Y  *  I  W  S  F  D  G  L  L  S  L  K  N  L  P  I  Q  Y  P  W  L  R  G  S  N  T  A  G  C  *  D  R  F :   Y  G  E  *  S  *  S  I  I  *  A  V  Q  E  N  K  Q  L  Y  N  *  *  W  T  N  S  Q   : G  R  I  S  A  G  N  F  Q  E  P  K  Q  E  R  S  F  C  R  Q   : D  F  *  S  I  *  F  Q  A  Q  R  S  D  W  I  W  R  I  C  Q  I  I  E  C  I  P  P  K  C  T  S  S  R  *  N  C  I :   C  I  P  I  I  *  S  K  A  D  W  L  Y  *  E  R  R   : A  E  R  D  G  F  G  A  A  E  *  V  R  L  D  S  F  G  *  Y  S  *  N  D  C  R  *   : D  I  *  *  S  R  *  K  E  *  R  E  D  R  *  R  R  M  E  G  V  C  F  N  E  S  L  S  S  K  E  Y  D  P  S  I  S  Q  :  G  Y  N  F  S  I  S  *  L  C  D  E  L  *  G  G  R  F  G  S  L  D  S  C  F  *  H  I  T  R  V  V  E  T  P  T  Y  Q  V  I  S  S  E  L  V  M  Q  Q  K  C  K  R  V  E  I  N  R  I  L  H  *  N  F  G  S  W  L  H  Q  I  D  A  E  N  Q  F  F  C  Q  L  Q  *  A  L  A  R  C  T  T  F  K  V  S  S  *  S  V  G  V  R  Y  Q  G  S  I  E  S  R  S  F  V  Q  M  *  *  T  N  M  N  F  K  F  E  I  Q  I  A  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101041" stop="101167"/>
                    <exon start="101797" stop="101879"/>
                    <exon start="102036" stop="102095"/>
                    <exon start="102277" stop="102385"/>
                    <exon start="102494" stop="102546"/>
                    <exon start="102640" stop="102720"/>
                    <exon start="102817" stop="102929"/>
                    <exon start="103097" stop="103160"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISLVNQHFIEFGLLMGCFPSKICRFSTPGYEDPTLLAAETAFTVSEVEALYELFKKISSSIIDDGLIHKEEFQLAIFKNQNRRDLFADRIFDLFDFKRNGVIGFGEFVRSLSVFHPNAPVADKIAFAFRLYDLRQTGYIEREELKEMVLALLNESDLILSDDIVEMIVDKTFDEADKKSDGKIDEEEWKEFVSMNPSLLKNMTLPYLKDITLAFPSFVMNSEVEDSEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100606" e_stop="101167"/>
            <exon e_start="101797" e_stop="101879"/>
            <exon e_start="102036" e_stop="102095"/>
            <exon e_start="102277" e_stop="102385"/>
            <exon e_start="102494" e_stop="102546"/>
            <exon e_start="102640" e_stop="102720"/>
            <exon e_start="102817" e_stop="102929"/>
            <exon e_start="103097" e_stop="103480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="0.998"/>
          <exon-intron don_prob="0.997" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="0.983"/>
          <exon-intron don_prob="0.766" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.308" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="100606" e_stop="101167" e_length="562"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="101168" i_stop="101796" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101797" e_stop="101879" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.736">
            <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="102036" e_stop="102095" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102277" e_stop="102385" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.766" acc_prob="0.975">
            <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102494" e_stop="102546" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.895" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102640" e_stop="102720" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.308" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102817" e_stop="102929" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="103097" e_stop="103480" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100606" stop="101167"/>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102929"/>
              <exon start="103097" stop="103480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTT : TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAG : GAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGG : ATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT : TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG : CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG : ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAA : GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACATGAATTTCAAATTTGAAATCCAAATTGCAATG</gDNA_template>
            <first_frame> H  I  S  N  S  S  L  F  V  R  E  K  N  V  Y  V  I  T  I  S  L  C  I  V  K  A  I  S  K  L  V  A  K  T  E  W  Y  S  A  A  E  D  I  R  C  R  F  *  S  E  G  Q  L  L  Y  R  A  R  S  F  D  P  F  V  L  L  F  L  F  L  S  Y  F  E  *  A  I  T  F  D  V  L  V  I  T  L  N  L  I  K  *  H  K  S  V  F  L  L  S  A  I  F  L  L  F  H  F  D  F  D  I  I  L  L  C  M  T  R  L  L  N  S  L  M  M  R  L  K  L  F  S  C  I  *  L  S  G  G  C  L  T  K  L  H  *  N  I  S  L  V  N  Q  H  F  I  E  F  G  L  L  M  G  C  F  P  S  K  I  C  R  F  S  T  P  G  Y  E  D  P  T  L  L  A  A  E  T  A   : F  T  V  S  E  V  E  A  L  Y  E  L  F  K  K  I  S  S  S  I  I  D  D  G  L  I  H  K  :  E  E  F  Q  L  A  I  F  K  N  Q  N  R  R  D  L  F  A  D  R  :  I  F  D  L  F  D  F  K  R  N  G  V  I  G  F  G  E  F  V  R  S  L  S  V  F  H  P  N  A  P  V  A  D  K  I  A   : F  A  F  R  L  Y  D  L  R  Q  T  G  Y  I  E  R  E  E  :  L  K  E  M  V  L  A  L  L  N  E  S  D  L  I  L  S  D  D  I  V  E  M  I  V  D  K  :  T  F  D  E  A  D  K  K  S  D  G  K  I  D  E  E  E  W  K  E  F  V  S  M  N  P  S  L  L  K  N  M  T  L  P  Y  L  K :   D  I  T  L  A  F  P  S  F  V  M  N  S  E  V  E  D  S  E  V  *  T  H  A  F  S  I  *  H  A  *  L  K  L  P  R  I  R  *  S  L  P  N  *  *  C  N  R  N  A  K  E  S  R  L  I  G  F  C  I  E  I  L  E  V  G  Y  T  R  L  M  Q  K  I  S  S  F  A  S  S  N  R  H  *  Q  D  V  L  L  L  K  Y  L  A  S  L  L  E  L  D  I  K  V  V  L  K  V  E  V  L  F  K  C  N  K  Q  T  *  I  S  N  L  K  S  K  L  Q   </first_frame>
            <second_frame>  I  L  V  T  P  V  Y  L  *  G  K  K  M  F  M  S  *  L  Y  L  F  A  L  S  R  L  *  V  N  *  L  R  K  Q  N  G  I  V  L  L  K  I  *  D  A  D  F  E  V  K  G  N  C  Y  I  E  L  E  A  L  I  H  L  F  F  Y  S  C  F  Y  L  I  L  S  K  R  *  H  S  M  S  W  *  L  P  *  T  *  *  S  S  T  N  Q  Y  F  F  F  L  L  S  S  Y  C  F  I  L  T  L  T  *  Y  Y  Y  A  *  L  V  C  S  I  P  *  *  *  G  *  S  C  S  L  V  F  D  C  Q  E  A  V  *  R  S  F  T  R  I  Y  R  *  L  T  N  I  L  L  N  L  V  F  *  W  A  A  F  P  Q  K  S  A  D  S  V  P  L  V  T  R  I  Q  H  C  W  L  L  R  P  L  :  L  R  *  V  K  L  K  H  Y  M  S  C  S  R  K  *  A  A  L  *  L  M  M  D  *  F  T  R :   K  N  F  S  W  Q  F  S  R  T  K  T  G  E  I  F  L  Q  T  G :   F  L  I  Y  L  I  S  S  A  T  E  *  L  D  L  E  N  L  S  D  H  *  V  Y  S  T  Q  M  H  Q  *  Q  I  K  L  H  :  L  H  S  D  Y  M  I  *  G  R  L  V  I  L  R  E  K  S :   *  K  R  W  F  W  R  C  *  M  S  Q  T  *  F  F  R  M  I  *  L  K  *  L  *  I  R :   H  L  M  K  Q  I  K  R  V  T  G  R  *  M  K  K  N  G  R  S  L  F  Q  *  I  P  L  F  *  R  I  *  P  F  H  I  S   : R  I  *  L  *  H  F  L  A  L  *  *  T  L  R  W  K  I  R  K  S  R  L  M  L  L  A  Y  N  T  R  S  *  N  S  H  V  S  G  N  L  F  R  T  S  D  A  T  E  M  Q  K  S  R  D  *  S  D  F  A  L  K  F  W  K  L  A  T  P  D  *  C  R  K  S  V  L  L  P  A  P  I  G  I  S  K  M  Y  Y  F  *  S  I  *  L  V  C  W  S  *  I  S  R  *  Y  *  K  S  K  F  C  S  N  V  I  N  K  H  E  F  Q  I  *  N  P  N  C  N  </second_frame>
            <third_frame>   Y  *  *  L  Q  F  I  C  E  G  K  K  C  L  C  H  N  Y  I  S  L  H  C  Q  G  Y  K  *  I  S  C  E  N  R  M  V  *  C  C  *  R  Y  K  M  Q  I  L  K  *  R  A  I  A  I  *  S  *  K  L  *  S  I  C  S  S  I  L  V  F  I  L  F  *  V  S  D  N  I  R  C  P  G  D  Y  L  E  P  D  K  V  A  Q  I  S  I  S  S  F  C  Y  L  P  T  V  S  F  *  L  *  H  N  I  I  M  H  D  S  F  A  Q  F  P  D  D  E  V  E  V  V  L  L  Y  L  I  V  R  R  L  F  D  E  A  S  L  E  Y  I  V  S  *  P  T  F  Y  *  I  W  S  F  D  G  L  L  S  L  K  N  L  P  I  Q  Y  P  W  L  R  G  S  N  T  A  G  C  *  D  R  F :   Y  G  E  *  S  *  S  I  I  *  A  V  Q  E  N  K  Q  L  Y  N  *  *  W  T  N  S  Q   : G  R  I  S  A  G  N  F  Q  E  P  K  Q  E  R  S  F  C  R  Q   : D  F  *  S  I  *  F  Q  A  Q  R  S  D  W  I  W  R  I  C  Q  I  I  E  C  I  P  P  K  C  T  S  S  R  *  N  C  I :   C  I  P  I  I  *  S  K  A  D  W  L  Y  *  E  R  R   : A  E  R  D  G  F  G  A  A  E  *  V  R  L  D  S  F  G  *  Y  S  *  N  D  C  R  *   : D  I  *  *  S  R  *  K  E  *  R  E  D  R  *  R  R  M  E  G  V  C  F  N  E  S  L  S  S  K  E  Y  D  P  S  I  S  Q  :  G  Y  N  F  S  I  S  *  L  C  D  E  L  *  G  G  R  F  G  S  L  D  S  C  F  *  H  I  T  R  V  V  E  T  P  T  Y  Q  V  I  S  S  E  L  V  M  Q  Q  K  C  K  R  V  E  I  N  R  I  L  H  *  N  F  G  S  W  L  H  Q  I  D  A  E  N  Q  F  F  C  Q  L  Q  *  A  L  A  R  C  T  T  F  K  V  S  S  *  S  V  G  V  R  Y  Q  G  S  I  E  S  R  S  F  V  Q  M  *  *  T  N  M  N  F  K  F  E  I  Q  I  A  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101041" stop="101167"/>
                    <exon start="101797" stop="101879"/>
                    <exon start="102036" stop="102095"/>
                    <exon start="102277" stop="102385"/>
                    <exon start="102494" stop="102546"/>
                    <exon start="102640" stop="102720"/>
                    <exon start="102817" stop="102929"/>
                    <exon start="103097" stop="103160"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISLVNQHFIEFGLLMGCFPSKICRFSTPGYEDPTLLAAETAFTVSEVEALYELFKKISSSIIDDGLIHKEEFQLAIFKNQNRRDLFADRIFDLFDFKRNGVIGFGEFVRSLSVFHPNAPVADKIAFAFRLYDLRQTGYIEREELKEMVLALLNESDLILSDDIVEMIVDKTFDEADKKSDGKIDEEEWKEFVSMNPSLLKNMTLPYLKDITLAFPSFVMNSEVEDSEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="104929" PGL_stop="106885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104929" e_stop="105060"/>
            <exon e_start="105597" e_stop="106089"/>
            <exon e_start="106770" e_stop="106885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.998"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104929" e_stop="105060" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.939">
            <gDNA_intron_boundary i_start="105061" i_stop="105596" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="105597" e_stop="106089" e_length="493"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="106090" i_stop="106769" i_length="680"/>
          </intron>
          <exon e_serial="3" e_score="0.905">
            <gDNA_exon_boundary e_start="106770" e_stop="106885" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104929" stop="105060"/>
              <exon start="105597" stop="106089"/>
              <exon start="106770" stop="106885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACCCAACAATCTCCGATTCTATTTTTCAGAAAAAAATAAAAATTTCTAAATAGAAACTAAAACCCAAATTTATGAATCCAAATCTTGCCCACTGAATCTAAAAAAGTGCCGATAGGATTTCCACTTTCAG : AATTGTGAGATTGATTGGATCAATGTGTGAACTGTGGATGACTTAATCTGTAATGCAATCAATAAATTCGGGTGAAAAGAAGTGTTTGAAACGTTCGAGATCATTTTCAAGTGAGATGCCAGGGACTGATACAAATGTTGCAAAGCCTTTAGAGGATTGCGTCCTGTTTCCTGTTGAAGATATAGTGCAGTATCCTCTACCTGGTTGTGGTTCACCAACGTCTATAGGTTTTAGTCCAGATGATAGTTTAGTTACATATTTATATAGTCCAAACCAAAATCTATGTAGAAAGGTTTTTGTATTGGATCTCAAGAATGGAAGGCATGAATTGTTCTTTAGTCCACCAGATGGTGGACTCGATGAGAATAACTTATCTGCTGAAGAGAAGCTTAGAAGGGAGAGGTCAAGGGAACGTGGTTTAGGGGTAACACGATATGAGTGGGTTAAGGCAAGCGCCAGACGGAAAGTCATTATGGTACCACTACCTGCTGGA : GTATACTTGAAGGATCAGAATGCAGAACCAGAACTTAAGATAGCAAGTACATCCTCCTCGCCAGTCTTGGATCCACATATTTCACCTGATGGTACCAGGCTTGCATATGTGAGAGA</gDNA_template>
            <first_frame> G  P  N  N  L  R  F  Y  F  S  E  K  N  K  N  F  *  I  E  T  K  T  Q  I  Y  E  S  K  S  C  P  L  N  L  K  K  C  R  *  D  F  H  F  Q  :  N  C  E  I  D  W  I  N  V  *  T  V  D  D  L  I  C  N  A  I  N  K  F  G  *  K  E  V  F  E  T  F  E  I  I  F  K  *  D  A  R  D  *  Y  K  C  C  K  A  F  R  G  L  R  P  V  S  C  *  R  Y  S  A  V  S  S  T  W  L  W  F  T  N  V  Y  R  F  *  S  R  *  *  F  S  Y  I  F  I  *  S  K  P  K  S  M  *  K  G  F  C  I  G  S  Q  E  W  K  A  *  I  V  L  *  S  T  R  W  W  T  R  *  E  *  L  I  C  *  R  E  A  *  K  G  E  V  K  G  T  W  F  R  G  N  T  I  *  V  G  *  G  K  R  Q  T  E  S  H  Y  G  T  T  T  C  W   : S  I  L  E  G  S  E  C  R  T  R  T  *  D  S  K  Y  I  L  L  A  S  L  G  S  T  Y  F  T  *  W  Y  Q  A  C  I  C  E  R </first_frame>
            <second_frame>  D  P  T  I  S  D  S  I  F  Q  K  K  I  K  I  S  K  *  K  L  K  P  K  F  M  N  P  N  L  A  H  *  I  *  K  S  A  D  R  I  S  T  F  R :   I  V  R  L  I  G  S  M  C  E  L  W  M  T  *  S  V  M  Q  S  I  N  S  G  E  K  K  C  L  K  R  S  R  S  F  S  S  E  M  P  G  T  D  T  N  V  A  K  P  L  E  D  C  V  L  F  P  V  E  D  I  V  Q  Y  P  L  P  G  C  G  S  P  T  S  I  G  F  S  P  D  D  S  L  V  T  Y  L  Y  S  P  N  Q  N  L  C  R  K  V  F  V  L  D  L  K  N  G  R  H  E  L  F  F  S  P  P  D  G  G  L  D  E  N  N  L  S  A  E  E  K  L  R  R  E  R  S  R  E  R  G  L  G  V  T  R  Y  E  W  V  K  A  S  A  R  R  K  V  I  M  V  P  L  P  A  G  :  V  Y  L  K  D  Q  N  A  E  P  E  L  K  I  A  S  T  S  S  S  P  V  L  D  P  H  I  S  P  D  G  T  R  L  A  Y  V  R   </second_frame>
            <third_frame>   T  Q  Q  S  P  I  L  F  F  R  K  K  *  K  F  L  N  R  N  *  N  P  N  L  *  I  Q  I  L  P  T  E  S  K  K  V  P  I  G  F  P  L  S   : E  L  *  D  *  L  D  Q  C  V  N  C  G  *  L  N  L  *  C  N  Q  *  I  R  V  K  R  S  V  *  N  V  R  D  H  F  Q  V  R  C  Q  G  L  I  Q  M  L  Q  S  L  *  R  I  A  S  C  F  L  L  K  I  *  C  S  I  L  Y  L  V  V  V  H  Q  R  L  *  V  L  V  Q  M  I  V  *  L  H  I  Y  I  V  Q  T  K  I  Y  V  E  R  F  L  Y  W  I  S  R  M  E  G  M  N  C  S  L  V  H  Q  M  V  D  S  M  R  I  T  Y  L  L  K  R  S  L  E  G  R  G  Q  G  N  V  V  *  G  *  H  D  M  S  G  L  R  Q  A  P  D  G  K  S  L  W  Y  H  Y  L  L  E :   Y  T  *  R  I  R  M  Q  N  Q  N  L  R  *  Q  V  H  P  P  R  Q  S  W  I  H  I  F  H  L  M  V  P  G  L  H  M  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105643" stop="106089"/>
                    <exon start="106770" stop="106883"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVMQSINSGEKKCLKRSRSFSSEMPGTDTNVAKPLEDCVLFPVEDIVQYPLPGCGSPTSIGFSPDDSLVTYLYSPNQNLCRKVFVLDLKNGRHELFFSPPDGGLDENNLSAEEKLRRERSRERGLGVTRYEWVKASARRKVIMVPLPAGVYLKDQNAEPELKIASTSSSPVLDPHISPDGTRLAYVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="109618" PGL_stop="110435"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109618" e_stop="110435"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="109618" e_stop="110435" e_length="818"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109618" stop="110435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGAACGGAAAAATGGGTACTGGTGGTCATTGGACAGCAAATATATAGCATTCACACAGGTTGATTCATCTGGGATACCTTTATTCAGAATTATGCATCAAGGTAAAAGTTCCGTTGGTCCTGAGGCACAGGAAGACCACGCTTACCCTTTTGCTGGAGGGCCAAATGTCAAAATTCGCCTGGGAGTGGTTTCAGCTAACGGGGGTCAAATAACATGGATGGATCTTCTTTGTGGTGTAAAGGACAAAGCAAATGAGGACGAGGAATATTTGGCGAGAGTGAATTGGATGCATGGAAATATTCTGACTGCACAAGTCTTGAGTCGATCACAATCCAAACTGAAAATCATTAAATTTGATATCAAGACAGGGAAAAGGAGTGTAATATTGGTTGAAGAACATGATACATGGGTCAATCTTCACGATTGTTTTATACCTTTGGACAAAGGACTCAACAGAACTAATGGTGCATTTATTTGGGCCAGCGAGAAAACAGGGTTCAAACATTTGTATCTTCATGACACAAATGGAGTCTGTTTGGGACCGATAACTCAAGGTGATTGGTTGGTTGAACAAATTGCGGGTGTAAATGAAGTTACTGGCCTTGTATATTTTACAGGAACTTTGGATGGGCCTATGGAATCTCACCTTTACTGTGCTAAATTGTTCCCCGAAGCTAACGGTCCATTGCAGTCCCCTTTGAGATTGACTAATGGACATGGAAAACATGTCGTTGTGCTTGATCGTCAAATGCAAAGATTCATAGATATCCATGATTCCTTGGTCTCACCTCCCAGAATTTCACTCTGCTCCTTGCA</gDNA_template>
            <first_frame> M  E  R  K  N  G  Y  W  W  S  L  D  S  K  Y  I  A  F  T  Q  V  D  S  S  G  I  P  L  F  R  I  M  H  Q  G  K  S  S  V  G  P  E  A  Q  E  D  H  A  Y  P  F  A  G  G  P  N  V  K  I  R  L  G  V  V  S  A  N  G  G  Q  I  T  W  M  D  L  L  C  G  V  K  D  K  A  N  E  D  E  E  Y  L  A  R  V  N  W  M  H  G  N  I  L  T  A  Q  V  L  S  R  S  Q  S  K  L  K  I  I  K  F  D  I  K  T  G  K  R  S  V  I  L  V  E  E  H  D  T  W  V  N  L  H  D  C  F  I  P  L  D  K  G  L  N  R  T  N  G  A  F  I  W  A  S  E  K  T  G  F  K  H  L  Y  L  H  D  T  N  G  V  C  L  G  P  I  T  Q  G  D  W  L  V  E  Q  I  A  G  V  N  E  V  T  G  L  V  Y  F  T  G  T  L  D  G  P  M  E  S  H  L  Y  C  A  K  L  F  P  E  A  N  G  P  L  Q  S  P  L  R  L  T  N  G  H  G  K  H  V  V  V  L  D  R  Q  M  Q  R  F  I  D  I  H  D  S  L  V  S  P  P  R  I  S  L  C  S  L   </first_frame>
            <second_frame>  W  N  G  K  M  G  T  G  G  H  W  T  A  N  I  *  H  S  H  R  L  I  H  L  G  Y  L  Y  S  E  L  C  I  K  V  K  V  P  L  V  L  R  H  R  K  T  T  L  T  L  L  L  E  G  Q  M  S  K  F  A  W  E  W  F  Q  L  T  G  V  K  *  H  G  W  I  F  F  V  V  *  R  T  K  Q  M  R  T  R  N  I  W  R  E  *  I  G  C  M  E  I  F  *  L  H  K  S  *  V  D  H  N  P  N  *  K  S  L  N  L  I  S  R  Q  G  K  G  V  *  Y  W  L  K  N  M  I  H  G  S  I  F  T  I  V  L  Y  L  W  T  K  D  S  T  E  L  M  V  H  L  F  G  P  A  R  K  Q  G  S  N  I  C  I  F  M  T  Q  M  E  S  V  W  D  R  *  L  K  V  I  G  W  L  N  K  L  R  V  *  M  K  L  L  A  L  Y  I  L  Q  E  L  W  M  G  L  W  N  L  T  F  T  V  L  N  C  S  P  K  L  T  V  H  C  S  P  L  *  D  *  L  M  D  M  E  N  M  S  L  C  L  I  V  K  C  K  D  S  *  I  S  M  I  P  W  S  H  L  P  E  F  H  S  A  P  C  </second_frame>
            <third_frame>   G  T  E  K  W  V  L  V  V  I  G  Q  Q  I  Y  S  I  H  T  G  *  F  I  W  D  T  F  I  Q  N  Y  A  S  R  *  K  F  R  W  S  *  G  T  G  R  P  R  L  P  F  C  W  R  A  K  C  Q  N  S  P  G  S  G  F  S  *  R  G  S  N  N  M  D  G  S  S  L  W  C  K  G  Q  S  K  *  G  R  G  I  F  G  E  S  E  L  D  A  W  K  Y  S  D  C  T  S  L  E  S  I  T  I  Q  T  E  N  H  *  I  *  Y  Q  D  R  E  K  E  C  N  I  G  *  R  T  *  Y  M  G  Q  S  S  R  L  F  Y  T  F  G  Q  R  T  Q  Q  N  *  W  C  I  Y  L  G  Q  R  E  N  R  V  Q  T  F  V  S  S  *  H  K  W  S  L  F  G  T  D  N  S  R  *  L  V  G  *  T  N  C  G  C  K  *  S  Y  W  P  C  I  F  Y  R  N  F  G  W  A  Y  G  I  S  P  L  L  C  *  I  V  P  R  S  *  R  S  I  A  V  P  F  E  I  D  *  W  T  W  K  T  C  R  C  A  *  S  S  N  A  K  I  H  R  Y  P  *  F  L  G  L  T  S  Q  N  F  T  L  L  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109618" stop="110433"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MERKNGYWWSLDSKYIAFTQVDSSGIPLFRIMHQGKSSVGPEAQEDHAYPFAGGPNVKIRLGVVSANGGQITWMDLLCGVKDKANEDEEYLARVNWMHGNILTAQVLSRSQSKLKIIKFDIKTGKRSVILVEEHDTWVNLHDCFIPLDKGLNRTNGAFIWASEKTGFKHLYLHDTNGVCLGPITQGDWLVEQIAGVNEVTGLVYFTGTLDGPMESHLYCAKLFPEANGPLQSPLRLTNGHGKHVVVLDRQMQRFIDIHDSLVSPPRISLCSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="111226" PGL_stop="111810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111226" e_stop="111810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="111226" e_stop="111810" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111226" stop="111810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTCTGGTGCTCCTGTTACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACACAGCATGGTTCACTTGATTATAGAAGAAAAATTTGTACTATTCTCAGGCTAATAAAAGTTGTTTGTGTTAACTTAATCTGTGTTATAGCTGCCATGTACCATTAGTACCAGATGTACAAAAATAATGCAACACTCCATTTCCTGGGAAGAAATTAATTTGTTTTTC</gDNA_template>
            <first_frame> C  F  W  C  S  C  Y  I  M  G  R  I  *  Y  I  L  H  R  K  V  Y  G  P  T  I  *  K  S  I  S  L  S  R  G  L  R  N  A  P  R  *  Q  D  Q  R  E  A  F  T  R  A  W  H  D  R  *  K  C  A  F  *  A  H  C  *  A  Y  *  R  T  C  G  S  Q  K  A  L  R  V  V  N  I  P  R  *  T  S  H  A  S  E  T  E  R  S  Y  I  H  G  G  E  N  L  G  I  H  R  E  K  L  V  N  G  L  L  I  V  L  A  I  A  Y  M  P  S  A  L  G  *  R  K  F  W  G  S  F  P  G  Q  H  S  M  V  H  L  I  I  E  E  K  F  V  L  F  S  G  *  *  K  L  F  V  L  T  *  S  V  L  *  L  P  C  T  I  S  T  R  C  T  K  I  M  Q  H  S  I  S  W  E  E  I  N  L  F  F </first_frame>
            <second_frame>  V  S  G  A  P  V  T  S  W  D  G  Y  D  T  F  Y  T  E  K  Y  M  G  L  P  S  E  N  P  S  V  Y  Q  E  G  S  V  M  H  H  V  D  K  I  K  G  K  L  L  L  V  H  G  M  I  D  E  N  V  H  F  R  H  T  A  R  L  I  N  A  L  V  A  A  R  K  P  Y  E  L  L  I  F  P  D  E  R  H  M  P  R  R  L  R  D  R  I  Y  M  E  E  R  I  W  E  F  I  E  R  N  L  *  M  A  Y  S  L  F  *  Q  S  L  I  C  P  R  L  S  G  R  E  N  F  G  A  H  F  Q  V  N  T  A  W  F  T  *  L  *  K  K  N  L  Y  Y  S  Q  A  N  K  S  C  L  C  *  L  N  L  C  Y  S  C  H  V  P  L  V  P  D  V  Q  K  *  C  N  T  P  F  P  G  K  K  L  I  C  F   </second_frame>
            <third_frame>   F  L  V  L  L  L  H  H  G  T  D  M  I  H  F  T  Q  K  S  I  W  A  Y  H  L  K  I  H  Q  S  I  K  R  A  P  *  C  T  T  L  T  R  S  K  G  S  F  Y  S  C  M  A  *  S  M  K  M  C  I  L  G  T  L  L  G  L  L  T  H  L  W  Q  P  E  S  L  T  S  C  *  Y  S  Q  M  N  V  T  C  L  G  D  *  E  I  V  Y  T  W  R  R  E  F  G  N  S  S  R  E  T  C  E  W  P  T  H  C  S  S  N  R  L  Y  A  L  G  S  R  V  E  K  I  L  G  L  I  S  R  S  T  Q  H  G  S  L  D  Y  R  R  K  I  C  T  I  L  R  L  I  K  V  V  C  V  N  L  I  C  V  I  A  A  M  Y  H  *  Y  Q  M  Y  K  N  N  A  T  L  H  F  L  G  R  N  *  F  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111227" stop="111559"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSGAPVTSWDGYDTFYTEKYMGLPSENPSVYQEGSVMHHVDKIKGKLLLVHGMIDENVHFRHTARLINALVAARKPYELLIFPDERHMPRRLRDRIYMEERIWEFIERNL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111504" stop="111749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIVYTWRREFGNSSRETCEWPTHCSSNRLYALGSRVEKILGLISRSTQHGSLDYRRKICTILRLIKVVCVNLICVIAAMYH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="136111" PGL_stop="135646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136111" e_stop="135646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="136111" e_stop="135646" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136111" stop="135646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCAAGTCATACTTTTTTCCACAATAACAAAAAGCTAAATATTTCAAGTTAAAAGAGCCCCCCTACAAACACCACATTAACATCCCACCCTTTCCCAGAATTTAGTTTCAACCAGGTAACTATTAATATATGCACAAAATTTACATCTTCATACATACATATTTACTTAATCAGGTCACCAAGGCGTCGATCCATGATGACCGAAACAGACTGCAAGAATGCTGCCTCACTTGTTCCTGGGAGCACACTCTCTTCAGCTTCTTCAACAATCTGCTCAATCATAGACTCCTTCTTCAGTGCTTCCCTGCACATGATTCCTCCAATTGCACAAGGGGTGAGACCTCTCTCTGCACCTTTCTTCAGAAGCATAGTAGAGATACGAAATACACGTGCACAAGCAAGGGACATGGTCCAACCATGAAACTTCAGAAGCTCAATATCTTTCTCAGCATCAAGAGAGTTTAT</gDNA_template>
            <first_frame> Y  Q  V  I  L  F  S  T  I  T  K  S  *  I  F  Q  V  K  R  A  P  L  Q  T  P  H  *  H  P  T  L  S  Q  N  L  V  S  T  R  *  L  L  I  Y  A  Q  N  L  H  L  H  T  Y  I  F  T  *  S  G  H  Q  G  V  D  P  *  *  P  K  Q  T  A  R  M  L  P  H  L  F  L  G  A  H  S  L  Q  L  L  Q  Q  S  A  Q  S  *  T  P  S  S  V  L  P  C  T  *  F  L  Q  L  H  K  G  *  D  L  S  L  H  L  S  S  E  A  *  *  R  Y  E  I  H  V  H  K  Q  G  T  W  S  N  H  E  T  S  E  A  Q  Y  L  S  Q  H  Q  E  S  L  </first_frame>
            <second_frame>  I  K  S  Y  F  F  P  Q  *  Q  K  A  K  Y  F  K  L  K  E  P  P  Y  K  H  H  I  N  I  P  P  F  P  R  I  *  F  Q  P  G  N  Y  *  Y  M  H  K  I  Y  I  F  I  H  T  Y  L  L  N  Q  V  T  K  A  S  I  H  D  D  R  N  R  L  Q  E  C  C  L  T  C  S  W  E  H  T  L  F  S  F  F  N  N  L  L  N  H  R  L  L  L  Q  C  F  P  A  H  D  S  S  N  C  T  R  G  E  T  S  L  C  T  F  L  Q  K  H  S  R  D  T  K  Y  T  C  T  S  K  G  H  G  P  T  M  K  L  Q  K  L  N  I  F  L  S  I  K  R  V  Y </second_frame>
            <third_frame>   S  S  H  T  F  F  H  N  N  K  K  L  N  I  S  S  *  K  S  P  P  T  N  T  T  L  T  S  H  P  F  P  E  F  S  F  N  Q  V  T  I  N  I  C  T  K  F  T  S  S  Y  I  H  I  Y  L  I  R  S  P  R  R  R  S  M  M  T  E  T  D  C  K  N  A  A  S  L  V  P  G  S  T  L  S  S  A  S  S  T  I  C  S  I  I  D  S  F  F  S  A  S  L  H  M  I  P  P  I  A  Q  G  V  R  P  L  S  A  P  F  F  R  S  I  V  E  I  R  N  T  R  A  Q  A  R  D  M  V  Q  P  *  N  F  R  S  S  I  S  F  S  A  S  R  E  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136058" stop="135690"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSPPTNTTLTSHPFPEFSFNQVTINICTKFTSSYIHIYLIRSPRRRSMMTETDCKNAASLVPGSTLSSASSTICSIIDSFFSASLHMIPPIAQGVRPLSAPFFRSIVEIRNTRAQARDMVQP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135984" stop="135646"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMHKIYIFIHTYLLNQVTKASIHDDRNRLQECCLTCSWEHTLFSFFNNLLNHRLLLQCFPAHDSSNCTRGETSLCTFLQKHSRDTKYTCTSKGHGPTMKLQKLNIFLSIKRVY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 51 chains have been computed
$ 
$ memory statistics:
$ 55120 bytes spliced alignments in total
$ 26 spliced alignments have been stored
$ 2120 bytes was the average size of a spliced alignment
$ 27944 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1552 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 52 backtrace matrices have been allocated
$ 
$ date finished: 2010-01-22 06:35:25
-->
