<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-01-22 06:30:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558275" ref_strand="+" ref_description="SGN-E558275 [17589]">
      <seq>gtcagaactcctccactcttcccctcctaacggcgctactctcactcttctcggaatctccggcgacccaacgatggacggcggcaacggagaatgtcgatagacaatgagaaggttcagctgccaatcagtcctaaggcattagttgtgcatgatccatcgctcaatcaaggaggccagattaattcccccggtttttgctgccaatcgtgacccaatgcaaaatggatctgctgaggcagttatctgcaattccaagaaacttgaggatgcaatgcaggagattggtcttaaaattaaacaccatgaagataatgtcaaattcttgaaggctcagaagaacaggttggatgattcaattttggatatacgagttgttcttggcaagactcattcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagcttccatctgtgtccagctgcaaaagcgtactggaactcagattactcatattccatttatgaaggacatggataggaattgttgctttgcttgggaaggttgatgatgataatctcagcagaactctctcggattatcttgggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5488" stop="13212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5788" g_stop="5908" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5909" i_stop="10932" i_length="5024">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="259" r_length="139" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="374" r_length="115" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="613" r_length="239" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12887" g_stop="12912" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="639" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E558275" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5788" e_stop="5908"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="12912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGAACTCCTCCACTCTTCCCCCCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCC-ACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACAT-AATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCG</genome_strand>
        <mrna_strand>GTCAGAACTCCTCCACTCTTCCCCTCCTAACGGCGCTACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACGATGGACGGCGG-CAACGGAGAATGTCGATAGACAATGAGAAGGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGTTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCGGTTTTTGCTGCCAATCGTGACCCAATGCAAAATGGATCTGCTGAGGCAGTTATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGATTGGTCTTAAAATTAAACACCATGAAGATAATGTCAAATTCTTGAAGGCTCAGAAGAACAGGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTTGGCAAGACTCATTCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTTCCATCTGTGTCCAGCTGCAAAAGCGTACTGGAACTCAGATTACTCATATTCCATTTATGAAGGACATGGATAGGAATTGTTGCTTTGCTTGGGAAGGTTGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTCGGATTATCTTGGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472950" ref_strand="+" ref_description="SGN-E472950 [cSTB-30-D15]">
      <seq>gtcagaactcctccactcttcccctcctaacggcgctactctcactcttctcggaatctccggcgacccaacgatggacggcggccaacggagaatgtcgatagacaatgagaagctgccaatcagtcctaaggcattagttgtgcatgatccatcgctcaatcaaggaggccagattaattcccccgtttttgctgccaatcgtgacccaatgcaaaatggatctgctgaggcagttatctgcaattccaagaaacttgaggatgcaatgcaggagattggtcttaaaattaaacaccatgaagataatgtcaaattcttgaaggctcagaagaacaggttggatgattcaattttggatatacgagttgttcttggcaagactcattcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagcttccatctgtgtccagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5488" stop="12269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5788" g_stop="5902" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="253" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="368" r_length="115" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="11969" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="506" r_length="138" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E472950" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5788" e_stop="5902"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="11969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGAACTCCTCCACTCTTCCCCCCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGC</genome_strand>
        <mrna_strand>GTCAGAACTCCTCCACTCTTCCCCTCCTAACGGCGCTACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACGATGGACGGCGGCCAACGGAGAATGTCGATAGACAATGAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGTTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCGTTTTTGCTGCCAATCGTGACCCAATGCAAAATGGATCTGCTGAGGCAGTTATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGATTGGTCTTAAAATTAAACACCATGAAGATAATGTCAAATTCTTGAAGGCTCAGAAGAACAGGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTTGGCAAGACTCATTCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTTCCATCTGTGTCCAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413945" ref_strand="+" ref_description="SGN-E413945 [STM-18-N15]">
      <seq>gtcagaactcctccactcttcccctcctaacggcgctactctcactcttctcggaatctccggcgacccaacgatggacggcggccaacggagaatgtcgatagacaatgagaagctgccaatcagtcctaaggcattagttgtgcatgatccatcgctcaatcaaggaggccagattaattcccccgtttttgctgccaatcgtgacccaatgcaaaatggatctgctgaggcagttatctgcaattccaagaaacttgaggatgcaatgcaggagattggtcttaaaattaaacaccatgaagataatgtcaaattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5488" stop="11674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5788" g_stop="5902" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="253" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11374" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="322" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E413945" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5788" e_stop="5902"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGAACTCCTCCACTCTTCCCCCCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTG</genome_strand>
        <mrna_strand>GTCAGAACTCCTCCACTCTTCCCCTCCTAACGGCGCTACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACGATGGACGGCGGCCAACGGAGAATGTCGATAGACAATGAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGTTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCGTTTTTGCTGCCAATCGTGACCCAATGCAAAATGGATCTGCTGAGGCAGTTATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGATTGGTCTTAAAATTAAACACCATGAAGATAATGTCAAATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604492" ref_strand="+" ref_description="SGN-E604492 [74628]">
      <seq>ctcctccactcttccccccttaacggcgctactctcactcttcttggaatctccggcgacccaacgatggacggcggccaacggagaatgtcgatagacaatgagaagctgccaatcagtcctaaggcattagttgtgcatgatccatcgctcaatcaaggaggccagattaattcccccgtttttgctgccaatcgtgacccaatgcaaaatggatctgctgaggcagttatctgcaattccaagaaacttgaggatgcaatgcaggagattggtcttaaaattaaacaccatgaagataatgtcaaattcttgaagtctcagaagaacaggttggatgattcaattttggatatacgagttgttcttggcaagactcattcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagcttccatctgtgtccagctgcaaaagcgtactggaactcagattactcatattccatttatgaaggacatgataggaattgttgctttgcttgggaaggttgatgatgataatctcagcagaactctctcggattatcttgggctcgaaaccatgttaggagttgtttgcaagacgcgtgatggacataaagcactggaaaccatatgataaggaaggtcttataaactaaagttctggtcttcatggacttggagcttcaattggggaaacctttggatgaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5495" stop="13349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5795" g_stop="5902" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="246" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="361" r_length="115" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="599" r_length="238" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12887" g_stop="13049" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="764" r_length="165" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E604492" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5795" e_stop="5902"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="13049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCCACTCTTCCCCCCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAA-CATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATT-GGGAGACCCTTGGATGACAGA</genome_strand>
        <mrna_strand>CTCCTCCACTCTTCCCCCCTTAACGGCGCTACTCTCACTCTTCTTGGAATCTCCGGCGACCCAACGATGGACGGCGGCCAACGGAGAATGTCGATAGACAATGAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGTTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCGTTTTTGCTGCCAATCGTGACCCAATGCAAAATGGATCTGCTGAGGCAGTTATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGATTGGTCTTAAAATTAAACACCATGAAGATAATGTCAAATTCTTGAAGTCTCAGAAGAACAGGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTTGGCAAGACTCATTCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTTCCATCTGTGTCCAGCTGCAAAAGCGTACTGGAACTCAGATTACTCATATTCCATTTATGAAGGACATGATAGGAATTGTTGCTTTGCTTGGGAAGGTTGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTGCAAGACGCGTGATGGACATAAAGCACTGGAAACCATATGATAAGGAAGGTCTTATAAACTAAAGTTCTGGTCTTCATGGACTTGGAGCTTCAATTGGGGAAACCTTTGGATGACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592770" ref_strand="+" ref_description="SGN-E592770 [35986]">
      <seq>ctcttccccccttaacggcgctactctcactcttcttggaatctccggcgacccaacgatggacggcggccaacggagaatgtcgatagacaatgagaaggttcagctgccaatcagtcctaaggcattagttgtgcatgatccatcgctcaatcaaggaggccagattaattcccccgtttttgctgccaatcgtgacccaatgcaaaatggatctgctgaggcagttatctgcaattccaagaaacttgaggatgcaatgcaggagattggtcttaaaattaaacaccatgaagataatgtcaaattcttgaagtctcagaagaacaggttggatgattcaattttggatatacgagttgttcttggcaagactcattcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagcttccatctgtgtccagctgcaaaagcgtactggaactcagattactcatattccatttatgaaggacatgataggaattgttgctttgcttgggaaggttgatgatgataatctcagcagaactctctcggattatcttgggctcgaaaccatgttaggagttgtttgcaagacgcgtgatggacataaagcactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5503" stop="13264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5803" g_stop="5908" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5909" i_stop="10932" i_length="5024">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="244" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="359" r_length="115" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="597" r_length="238" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12887" g_stop="12964" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="675" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E592770" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5803" e_stop="5908"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="12964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCCCCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGA</genome_strand>
        <mrna_strand>CTCTTCCCCCCTTAACGGCGCTACTCTCACTCTTCTTGGAATCTCCGGCGACCCAACGATGGACGGCGGCCAACGGAGAATGTCGATAGACAATGAGAAGGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGTTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCGTTTTTGCTGCCAATCGTGACCCAATGCAAAATGGATCTGCTGAGGCAGTTATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGATTGGTCTTAAAATTAAACACCATGAAGATAATGTCAAATTCTTGAAGTCTCAGAAGAACAGGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTTGGCAAGACTCATTCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTTCCATCTGTGTCCAGCTGCAAAAGCGTACTGGAACTCAGATTACTCATATTCCATTTATGAAGGACATGATAGGAATTGTTGCTTTGCTTGGGAAGGTTGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTGCAAGACGCGTGATGGACATAAAGCACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746521" ref_strand="+" ref_description="SGN-E746521 [GI|47104229]">
      <seq>ccttaacggcgatactctcactcttctcggaatctccggcgacccaacaatggacggcggccaacggagaatgtccatagacaatgagaagctgccaatcagtcctaaggcattaggtgtgcatgatccatcgctcaatcaaggaggccagattaattcccccatttttgctgccaatcgtgatccaatacaaaatggatctgctgaggcagtcatctgcaattccaagaaacttgaggatgcaatgcaggagtttggtcttaaaattaagcaccatgaagataatgtcaaatacttgaaggctgtgaagaacgagttggatgattcaattttggatatacgagttgctcttggcacgactaaatcagcaagtgaaacttgttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagctgccatctgtgtccagctgcaaaagcgtagtggagctcagattacacagattccatttatgaaggacataataggaattgttgctttgcttgggaaggtcgatgatgataatctcagcagatctctctcggattatcttgggctcgaaaccatgttaggagttgtttgcaagacgcgtgatggagttaaagcactggaaacatatgatagggaaggtcgtataaataaaagttctggttttcatggacttggagctccaattgggagacccttggatgacagatatctcgtaatgtgtcttgaggacttaagaccatatgctggtaaatttattgctgatgaccctcagaggaggcttgacataaagaagccaagatacctcaatgaggaaactcctcctggttttcttggttttgctgtcaatatgatcaatatcgacactgcgaacttatattgtgtcacaagcactggttatggcctgagagagaccctcttctatagactcttctcacgtttgcaagtatacaaaacaagggctgacatgctgcaggcactacctcttatagctgatggagccatatcgttggatggtgggatcataaagagtggtggtatattctccctaggcgagagggaagtcaagatcaaatttccaatgagttctggaaggccgaatgtacctgaaaactattatgagactgagatccggttgaaggagctgcagtggaaaagggcaagatttgtggatgatttacagagagaacaaacattactggaccatgcaaagttcaactttgaaataaagaaacaagactttgtcaagtttcttgcacgaagctcatcctatgcttcagcgcctcagtttccagcaggaggggagcggtcaactccgatatcatgattgtgtgggaactttgagaccatttctatattagacagatggatgctttatcagttgatttgaagcttcagcttttattttatattctggataatgacctcttggataatatgtgcactttgggtcaatttcagcattaggtgcaggcttatgccagtctgattcaggtttaggtgaattttcatggatgagtggttgttcgcttaacgttaaggttgatctgtattgcaacttgcatcccccctcttattagctattgatatctagtatcagttgacaaattggctatgcttatgattgcgggtttgagatgaatatgaatgtagaaaattgaggattcatataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5512" stop="70672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5812" g_stop="5902" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="229" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="344" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="582" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12887" g_stop="13078" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="774" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13176" g_stop="13496" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="1095" r_length="321" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14287" g_stop="14509" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1096" r_stop="1318" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14510" i_stop="18299" i_length="3790">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.286" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18300" g_stop="18318" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1319" r_stop="1335" r_length="17" r_score="0.579"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18319" i_stop="20113" i_length="1795">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20114" g_stop="20126" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1336" r_stop="1348" r_length="13" r_score="0.385"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20127" i_stop="20312" i_length="186">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20313" g_stop="20534" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1349" r_stop="1564" r_length="216" r_score="0.833"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="20535" i_stop="20603" i_length="69">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="20604" g_stop="20732" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1565" r_stop="1693" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="20733" i_stop="20869" i_length="137">
            <donor d_prob="0.774" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="20870" g_stop="20897" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1694" r_stop="1722" r_length="29" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E746521" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>1729</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5812" e_stop="5902"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="13078"/>
          <exon e_start="13176" e_stop="13496"/>
          <exon e_start="14287" e_stop="14509"/>
          <exon e_start="18300" e_stop="18318"/>
          <exon e_start="20114" e_stop="20126"/>
          <exon e_start="20313" e_stop="20534"/>
          <exon e_start="20604" e_stop="20732"/>
          <exon e_start="20870" e_stop="20897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAGGTTTGATATTTTGATGATCTCTTCTTGCAAATGCTACTCATATTCTTTAGCACTTCTTTACTCTCTTTTCTTTTTCCTTTTTGAATTATTGTTTTAGACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAGGTAAAGAGGCTAGTCTTAAATAACGTCATTGTTTTATTCTCAACTTTTTCTTTCTTTCATAGTTCAACTTGTTTGTGAAGATACCCTAAAGAATTTATTGCCTATTAACTTGTTCCTTTTTGAGTATCAAGTAATATACTTGATCTCTAACTTTGCGCCTTAGTTGGAAATCTGATGTTATTTTGTGACCATGTTGCTTGACCTTTGTGGAGTGTAGTAGTTCGACCTTTCACTAACTTCCTCTTTCAATCTGCATAGAATAGTGTATGAAATCATGTTCTTCTCTTTCTATGTTCATTTCAAATGATTAACAGACCATTGGCATCTTTAATGAATCATTATTCTTTTTTAAAAAGGGGTGGGGGGGGGGTGTCTACAACACATTTTAGAAGTTAATCAGGAAACATTATCTATAATATTATATTCTGGTGGAGGAGTTTTCAGGATTTATCACGTTCAGAGTCTAACACAACTTTAGATTTACCTAAATGATGTTTGTCAATTATTGATATCTTAATCTCACTGTCTCCTAGGTGTTGTTCTTAATCCTACTCCTATGTTCATATATCATATGTATTTGAGTTTGTATGTTTATATATTAGATGTATTTGAATTTGCAGCACAATTTATTTTTCTTGTTGATTGCTTCATTGAATCATTATCCTCTCTACCTTCCCAAGGTAAGGGTAAGGCTGCCCAGACCCCACTTGTGGGATTTCACTGGATGTGTTGTTTGTTTGTGTTGCATCACTGAACCATTTGGATTCTGTCTTTCTCATGTACATTTTAGGGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCGGTAATATTTTGTGTTTCTAGTTAGACTATGCATGCTAATCAATGATTTATTTGTAATAATTTGTGTTGTTGATGCCAAGCAGATTAAGTCATCTCTGGGTTGGTTTAGGTAGCTTGAGGATTTCTAACTTGATCCTCGTTGCCCTTACATCCTGCTTTAATTGATTGACGATGTCATTTGATACTGCAAGCTATGCTTAAATTTTATCATGCTAGCAGGGAACTCTGCATGGAAAGAGATGCTATTTTTTCCCCCTTTTTAGAACTTTAAAGCTTGTGCTTGCTTTTGTATGCCTGCTGCAGATGTTCTCTTTGAGCAGTCCAAAGATGTAGAGATATAAGTAAAGTGCCTTTTTTTTAGTTCAAGCCATTACCTTAGTTGTGGGCCTGAGGTGTGGGGGGTTTTTGCTTGAACCCGACCATGTTAATTAAATATCAAAAATATGAACCCAACAAGAAGGGGACATGGAACCTTGCCTCAAGTCTACAAGAAAAGATTGCACAACAATCTTCCTAGGATAGGAAGTAGCCTACAAACAATCATTTCCAAATATCCAAAAAGAACTTAAATTAACAAAGAAGTTACATTTTTCATTAACCATTGGTAATTTTTGCTACAACAATTTCGTGAGAAAAGGACGATAGTTTTTTTCTTGGATGCAGTAAAACTGTCCCTTTTCAATTGAAGATGTTCATATTCTAACCTCATTACAGGTGAGAGAGAACACATCTGCTTCTAGTCTGTGAATGTGAATAGCTCTTTCCGACAACTGACCAGTTCCTTCTTGTTTGGAGGTGCTAATAAATTTCCTATTTCCCCATCTACTGTTCCTGATAGTCTCTGAATAGGGAATGTCTTTGTTTGTCAATCTTGAATTGAATGTCGATGGTAGAGAGGCATTTATGAATCTGCCTATCTTGTTAGCAATTGTCTTCCACCCAACATTAAAAGTTAGTCAGGGATGACAAGTGCAAGAATTCGTGCACGGAGGTTTGGCATCTACATATTTGCTTCCTTGTATTTGGAGTCCTCTAGTAGCAATATATGAAATTTTGGACATTGTTAGGCAAGACAAATGATAAGCTTGGGAAGGATCTTTTGCAGAACATACTGTAAAAGAATGGTCTAATTTATGTGCACTTCTGCTTTAGTAATTTGTTACAAGAGGAGACGTGGATAAATAGAAAATTTAGTAGTTCTGGTATTAAACAGTCAATATGTTGCGATGTTTTTCCCAATTCCTGCATCAAATTTGTCTGTTCTAAGCTTTTAGGGTCGAAAAACTGTTTTCTGCATAATGTTTTGATCTCCTAGTAATAGTGGTAAGAATTCATGAGAGAAAATATTGAAGAAATGAGTGGAATATATGTCAATGGTACCAAATGAAGACTAAGTAGATCAAATGAAGACCAAGTATATTTTTATTTTTTTTGATAAAGTTTAAGTTGTATTCTTCAGCTTAAGGTATGCTGGCTACCTCCAAAAAGTAACAAGCTAAGACCATAATTACATAGATCCTAGGAAATCTACCAACTGTTCTACTACGTCTATACCCTCTTCTTTACACCCAAAAAACATGTTAATGCAATTTTCTTCTACTTTCTGCATAGTGTTAGTAATAGTCTCATGACACCTAAGGTTTCTTTCTCTCCAAATAGCCCACCAGACACAAGTAGGTACTATAGACCATTGGGTGTTGCCCCCCCCCCCCCCCTCCTGACCTCATCCAACAGCTCAAAAGATCAGCAGTATGTTCTGGCCATCACCTAGGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGGACGGTAACCCTACAGTGTAAGAATAAGTGGCTGTTAGTTTCTTCCTTCTCATGACAAAAGAAACATCTGGAAACAATCTTGAAGCCTCTTTTCTTGAGTTTTCCGGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAGCATTTCACCTTGGTTGGGTTGTTGCCCTTCCGTATTTGTTTCCATGGACCATGAACTCCTCCAGAGTGAGTCATGACCTCTCTCTTATACAGTGTACACACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCTGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCATTTAGATTTCTCCTGAAGGTGAGGTTCCATCCTTGAGGGGACCAAATTTCAGCAATTGTACAAAAAGAAACGAGATCGGGGAAGACTGAGTTTATTAGACACTCTTGTCCAATCCACTTGTCCTTCCAAAAAAATATTTTGTTATCCTCTCCCACCTTGACCACCAAATTCACCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACTTTTTACGTGCTATCTACTACATTAGACACCCACTCCCCAGTCTGCCCATACTTGTTGAGAATTGCTCCTCCATAATGCCTGATCTTCAACACGAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCTTCAGATTTTATATGCGACGACCCCCTGTTTTCTTGCTTACTAAGGTTGTCTGCCATTTAATTCAGTGTATTTTTTCCCCCCTTTGTTCCCCAACCATAGAAAATCACGCCTTAATTTATTCAACCTCTCTTCTACCTTTGCTGGTAAAGGGAAAAGTGACATAACATATGTAGGCAAAACATCCAGGACCGAATTGATCAGAGTGACTCTTCCTCCCAGAGATTAGATAGTTTGCCTTCCTATTAACCAACCTCTTCTCTGTCTTCTCAATGATTCCATCCCAAATCTCCAGCTCCTTGTGATTATTCCCCACAGGCATTCTGCATTCCCAGGTAAGTAGTTGGTAAGTGCTCTATCTTGCATTGCAAGATGCTTGCCAACATCTGAATATTTGCCACTTGACTTGGAAGATGCTGCTTTTCCCCCCAGTTCACAGCCAGTCCAGAGATGGCCTCAAAAATCACCAAAACAACTCTAATGTTACTAACTTGTTCTGTCTTTGCATCACAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATATGCAGATTGACCCCTGACTGATTACCAATGTTGAAACCCTTTATCCAGTCGTTCTGATTGACCACTCTAATCATACTGTTGAGACCCTCCTTAGCTAAAATAATTAGGAAAGGGAAGAGAGGATCTCCAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAAACCTATCCATTTAAGCCATTTGTCTCCAAACCTCTTCTGCCTTAGAATATTGAGTAGAAACTCCGAATTGACATGATCATATGCCTTTTCTATATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTTGAGTCTACCCACTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATAACGGCCATTTGGTGATTGTTCTCTAATTTGCTTATCACTTTCTTTAATCTCTCCGCCAACAGCTTACCATAGACCTTGTACACACCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCATAGCTCCTGTCTTCTTTGGGATTAGAGCCACATAGGTGGCGTTGAGACTCTTCCCTATTTTCATGGAATTGTCTCACTGCATTCATGAAGTCTGTCTTCAGTATCTCCCAAAAGTTTTGGAAAAAACTCATCGGAGAGCCATCTGGTCTGGGGGCCTTATCACTAGAACATGATTTTATGCGATTGAAAACTTCATCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGTTTTCCGCTCCCTGTACATTAAATTCTGGCCTCCATTGTTCCGTTTTTATGTAAAGATTTTGATAGTAATTGATTATGGTTCCTTTAATTTCTTCTGAATCTGTTAATGTAACCCCTTCACCATCAGCTTGTCAATGGTGTTGAATCTTTTGTGTGCTGTAGCATCCAGTGAAAATACTTGGTATTTTTGTCTATGCAATTTAGGAAGATCTGGATAACAGGTCCCTGGTGTATTACCTGGACTGTTTGTAAAGAAGAAATTGGAGTTGTTCAAATGACGAACATAGCGATACTACATAGTATAAACTGTACATGTTTGTGAAACTAGCTTTTTACCATAGAATGCAAATGCCGAATATGTAGAATCTATTGAGGAATCCCATCCGCACTTGATTGGAAAAATAAGTACAGTCGGTCTTGTTTTGATTCGGGAAAAAATCTTTTTAAAAGGCATCTTAGCCTAAGAGGACTGAGAACTATAAGGCAAGCACAAACTGCTCCCACATACACTCATGATAAGGGAGGGTGGGGACAACCAGGCCACCACTTTTACCCTTAAGAGGCTAACAGGAAGTAAGCTTCACCCAGAATGTTACTCAGAATTCCTATCAAGGCCTTACCCTACTATTTATTTCCTAAATTCCTTTCACCTCAACTAGCTAACTCAAAACAAATTGAGTGTAGCCATGGATTCTTTTCTAGGACTTCAAGATATCTAGAGAGTAGAAGAGGAGAAGCTCCAATCAGAGTTCTGAGATCATTGCAAATATGATGCAACAAACTTGGAACCACACTCTCGGTGTGGAAGATAGGAATGAGCCTCTTGTCCTTAAATGAAAGGGAACTAACTGCGTGGGTCGCCCCCATAGCTTTGTATTCCTATAGGAAGTAGAATAGAAGAGTCTATCAACTATTTGTTGTTTTAGAAGGCTTAAATAAATGTGGATGCAAAGTAGTGTGTTTTGATTTGGGGTGTTCTTTGTCTTCTTTTAGTGGAGATCTATTACGATGCCTACTGAAGATAGACTCCTATCTATGCTCAATGTTATCAAAAGCAAAAAGCGCAAAAAAGTTCTAGGTTCCATTCGGGCTTAAGCTCAAAGTGCAAATAGAGCATGGATTTTAATGCAAAATGCTGCAAAGAGAGAAAAAAATACAATTATATATATGCTCAATTCAAGACTAATAATTATAAGTATGAATGACAATAAAAAAAACAAAGAAATTGAAAAAAAAATACGATAAAGTGAATATCAGTTGTTTAGTGTCACCTTTTCATAAGAGGTTCATTGACAAGGAAAAGTATGCCTTAGAATCTTGATGATGAAACTAAAGGTCAAACGCTCAACACGTATTGGGTCTCACTTCAGGGCTTAAGCGCTCTATGCCAACTATTTTGTTTGGCTTTATTAATTATGTTTGCGTGTATGGCAAAAACCCTGTTTGAAAATGTTGACTACTTATGCTATTATAATACTGATAAAGGCTTATTTGTATAAATGTGCTGAAAATTTTATTCTTTCCTTTTTTTTTTCTTTCTATAGTGGAGATAGTCGCACAAAATGACAGACATATTATTAAAGGACTTTACCTTTGCTTCCTTATCCTTGATAGCTAGATGTGAACCTTCACGAGTAGAGAAAAAGCACTTGGTCTATCTTGCACCCCTCATGCAAGACAAATGTATAATATGATATTGACTCTGATGGACCTAGTAGATTCCATATTGTTGTAAGCTTTTTGGCATAAAATGCAAGATGATTTTAACTCTATATAGAATCCATTACAGAGATGCAAGGGAGGTAGTCAATAGTCTTACCTACATATTTCTCCTTCACTGCTATTCTTTATAATAAGGTTATCCGTCCTTATAAAATGAAGAAGAGGATATCAGTTTACACTTTTGTTTTGACAGGATGTATTATTTACCAGTTGTACCTTATGAAGTTTTGCTCTCAATGTATGACCTATTGTCTCCGTGTGTGCAGCCTCAGTTTCCAGCAGGAGGGGAGCGGTCAACTCCGATATCATGATTGTGTGGGAACTTTGAGACCATTTATCAGTTGATTTGAAGCTTCAGCTTTTATTTTATATTCTGGATAATGACCTCTTGGATAATATGTGCAGTTTGGGTTAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATAGATGAGTGGTTGTTCGTTCATTCAGAACAGGTATACAGAAAATGTTCTATCAATTTACAGCATCGTACTAGTTACTGAACTTTCGCTTAACGTTAAGGTTGATCTGTATTGCAACTTGCATCCCCCCTCTTATTAGCTATTGATATCTAGTATCAGTTGACAAACTGGCTATGCTTATGATTGCGGGTTTGAGATGAATATGAATGTAGAAAAGTTAGGATTCATATATCTGAATTTTCTTTCTTATGTCGTCACAATTCCAATAGCAAATGAAGAAGATGAAAATGATTGACACCCTCCATCCTTTTCCTCTTCTTTATATTTATTGTGTTTATGAAAAAACTATGTAGTTGA-AACTAAGATAAGAAAAGGCCAAAT</genome_strand>
        <mrna_strand>CCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCATTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTTGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAGCTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTGCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTCCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATGTGTCTTGAGGACTTAAG.................................................................................................ACCATATGCTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTGGTGGTATATTCTCCCTAGGCGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-T-CAGTTTCCAGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGAGCGGTCA..........................................................................................................................................................................................ACTCCG-AT--ATCATGA-TTGTGTGG-GAACTTTGAGACCATTTCTATATTAGACAGATG-GATGCTTTATCAGTTGATTTGAAGCTTCAGCTTTTATTTTATATTCTGGATAATGACCTCTTGGATAATATGTGCACTTTGGGTCAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATGGATGAGTGGTTGTTC.....................................................................GCTTAACGTTAAGGTTGATCTGTATTGCAACTTGCATCCCCCCTCTTATTAGCTATTGATATCTAGTATCAGTTGACAAATTGGCTATGCTTATGATTGCGGGTTTGAGATGAATATGAATGTAGAAAA.........................................................................................................................................TTGAGGATTCATATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455048" ref_strand="+" ref_description="SGN-E455048 [cSTS-25-M3]">
      <seq>ccttaacggcgctactctcactcttcttggaatctccggcgacccaacgatggacggcggccaacggagaatgtcgatagacaatgagaaggttcagctgccaatcagtcctaaggcattagttgtgcatgatccatcgctcaatcaaggaggccagattaattcccccgtttttgctgccaatcgtgacccaatgcaaaatggatctgctgaggcagttatctgcaattccaagaaacttgaggatgcaatgcaggagattggtcttaaaattaaacaccatgaagataatgtcaaattcttgaagtctcagaagaacaggttggatgattcaattttggatatacgagttgttcttggcaagactcattcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagcttccatctgtgtccagctgcaaaagcgtactggaactcagattactcatattccatttatgaaggacatgataggaattgttgctttgcttgggaaggttgatgatgataatctcagcagaactctctcggattatcttgggctcgaaaccatgttaggagttgttttgcagacgcgtgatggacataaagcactggaaacatatgataagggaaggtcttataaataaaagttctggtcttcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5512" stop="13313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5812" g_stop="5908" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5909" i_stop="10932" i_length="5024">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="235" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="350" r_length="115" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="588" r_length="238" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12887" g_stop="13013" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="716" r_length="128" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E455048" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5812" e_stop="5908"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="13013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGAT-AGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGA</genome_strand>
        <mrna_strand>CCTTAACGGCGCTACTCTCACTCTTCTTGGAATCTCCGGCGACCCAACGATGGACGGCGGCCAACGGAGAATGTCGATAGACAATGAGAAGGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGTTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCGTTTTTGCTGCCAATCGTGACCCAATGCAAAATGGATCTGCTGAGGCAGTTATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGATTGGTCTTAAAATTAAACACCATGAAGATAATGTCAAATTCTTGAAGTCTCAGAAGAACAGGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTTGGCAAGACTCATTCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTTCCATCTGTGTCCAGCTGCAAAAGCGTACTGGAACTCAGATTACTCATATTCCATTTATGAAGGACATGATAGGAATTGTTGCTTTGCTTGGGAAGGTTGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTGCAGACGCGTGATGGACATAAAGCACTGGAAACATATGATAAGGGAAGGTCTTATAAATAAAAGTTCTGGTCTTCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359166" ref_strand="+" ref_description="SGN-E359166 [cLHT-11-M11]">
      <seq>cttaacggcgatactctcactcttctcggaatctccggcgacccaacaatggacggcggccaacggagaatgtccatagacaatgagaagctgccaatcagtcctaaggcattaggtgtgcatgatccatcgctcaatcaaggaggccagattaattcccccatttttgctgccaatcgtgatccaatacaaaatggatctgctgaggcagtcatctgcaattccaagaaacttgaggatgcaatgcaggagtttggtcttaaaattaagcaccatgaagataatgtcaaatacttgaaggctgtgaagaacgagttggatgattcaattttggatatacgagttgctcttggcacgactaaatcagcaagtgaaacttgttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagctgccatctgtgtccagctgcaaaagcgtagtggagctcagattacacagattccatttatgaaggacataataggaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5513" stop="12329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5813" g_stop="5902" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="228" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="343" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12029" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="541" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E359166" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5813" e_stop="5902"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTG</genome_strand>
        <mrna_strand>CTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCATTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTTGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAGCTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330090" ref_strand="+" ref_description="SGN-E330090 [cTOD-5-I4]">
      <seq>cgatactctcactcttctcggaatctccggcgacccaacaatggacggcggccaacggagaatgtccatagacaatgagaaggttcagctgccaatcagtcctaaggcattaggtgtgcatgatccatcgctcaatcaagtaggccacagtaattcccccacttttgctgccaatcgtgatccaatacaaaatggatctgctgaggcagtcatctgcaattccaagaaacttgaggatgcaatgcaggagtttggtcttaaaattaagcaccatgaagataatgtcaaatacttgaaggctgtgaagaacgagttggatgattcaattttggatatacgagttgctcttggcacgactaaatcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagctgccatctgtgtccagctgcaaaagcgtagtggaactcagattacacagattccatttatgaaggacataataggaattgttgctttgcttgggaaggtcgatgatgataatctcagcagatctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5521" stop="12371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5821" g_stop="5908" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5909" i_stop="10932" i_length="5024">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="226" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="341" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="579" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E330090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5821" e_stop="5908"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG</genome_strand>
        <mrna_strand>CGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211223" ref_strand="+" ref_description="SGN-E211223 [cLEC-70-N7]">
      <seq>gatactctcactcttctcggaatctccggcgacccaacaatggacggcggccaacggagaatgtccatagacaatgagaaggttcagctgccaatcagtcctaaggcattaggtgtgcatgatccatcgctcaatcaagtaggccacagtaattcccccacttttgctgccaatcgtgatccaatacaaaatggatctgctgaggcagtcatctgcaattccaagaaacttgaggatgcaatgcaggagtttggtcttaaaattaagcaccatgaagataatgtcaaatacttgaaggctgtgaagaacgagttggatgattcaattttggatatacgagttgctcttggcacgactaaatcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagctgccatctgtgtccagctgcaaaagcgtagtggaactcagattacacagattccatttatgaaggacataatangaattgttgctttgcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5522" stop="12342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5822" g_stop="5908" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5909" i_stop="10932" i_length="5024">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="225" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="340" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12042" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="551" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E211223" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5822" e_stop="5908"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGG</genome_strand>
        <mrna_strand>GATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATANGAATTGTTGCTTTGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483880" ref_strand="+" ref_description="SGN-E483880 [cSTE-11-C2]">
      <seq>gcggccaacggagaatgtcgatagacaatgagaagctgccaatcagtcctaaggcattagttgtgcatgatccatcgctcaatcaaggaggccagattaattcccccgtttttgctgccaatcgtgacccaatgcaaaatggatctgctgaggcagttatctgcaattccaagaaacttgaggatgcaatgcaggagattggtcttaaaattaaacaccatgaagataatgtcaaattcttgaagtctcagaagaacaggttggatgattcaattttggatatacgagttgttcttggcaagactcattcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagcttccatctgtgtccagctgcaaaagcgtactggaactcagattactcatattccatttatgaaggacatgataggaattgttgctttgctttggaaggttgatgatgataatctcagcagaactctctcggattatcttgggctcgaaaccatgtagggagttgtttgcagaacgcgtgatngacataaagcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5568" stop="13262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5868" g_stop="5902" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10933" g_stop="11070" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="173" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11306" g_stop="11420" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="288" r_length="115" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="526" r_length="238" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12887" g_stop="12962" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="602" r_length="76" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E483880" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5868" e_stop="5902"/>
          <exon e_start="10933" e_stop="11070"/>
          <exon e_start="11306" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="12962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAGGTTCTCTCTTTCCCTCTTCCCTCCTCCTATGTTTTTACCTTGCTTGTTTAGTGAATTAACTGAGTTTTGTACTCAATTGAAATTCTCATTCTGTCAATTGAGTTTTAGGATAAGTGATATAAACCATAGAAACACTTATGAATGCTAATGGGAACCGATTAAGCCTTCATGCAGCTGTTCTGATAAAATTCTTTGTCAACTTTGATGCTCATTTGACTGTAAGTTTAAGGTATCAGGGAATTTAGGGTTCTAGTCAGAGATTCATATGATAATCAACTATACATCATGCTTACGTTGGAAGGAGTATGTTAGGATCTAGTGGAAATGGAAAATTTACAAAGCAAGAGCTGTGAGGTGAAACCGTGTTATGCTTTTCCTTTAAAGAAAAGATCTCTAATAAGATCCACCACCAGTTCCTTTATCGCCCGGCTTTATCGATCCTCAAGCCTTTTCAATATTTAGCTTCCCTTTCCTTTTTAGAGCAAGTGATCTTTTTCTTTTCATGCACTAAAAATTAAAATGAGTTAAAATATCCTTGAGTGAGGATCCAGGGTCTGGGAAGCCTCAGGAAGAAGTAAATCTGATGACTTCACTAGGTAGGGATGGCAACTGGGTGGAGCGGGTTTTGTCTAATGCAGGGTGGGGTTGGTTTGACTTTATGTGGGGTAGGCCGGGACGGGGCGTTTGGAACTCTTTTGAAAAGAAATAATGCTGGTGCTGGGCAGGTTGCGGGTTCTTTCTCTTAATTCCATCCCTGTAAACATAGCTTCATTTTCCTTGAATAAACATAATATGTTATATGATAGTTGAAACTAATTAAAAATGAAATATAAAATCAAAATTGATTTGAAGTCCATATATAGCTTAAGTGCTCAAATTCAAAATATTTGATAGACTTCTGATATTCATAGAATGGTACTAATTAGTAGTTAGTTTGAGGCAGGTTCACAACTCTTAGTATTTAAAAATCACAATAAACATACTCATATAAATAGAAAAAAATTATTTTCTTAATTCGATTAATTTGACATATTTTCTCTTGCTGCAAAAATATTTTTATAATTTCATTGTACACTGTAACAAAATGATTAGCAAAAAGAGAAACAAAGAAAAACAGAATAGGATGCAAATTAAATGTTTCTGAAACTAGGAACGATAATGAGAGAAAACTATTGCTTGATTTAGTGTTTCATTCGATGGTTGATGTCTTTATTGATTTTGATTGTTTTTTTAAAAAAACGTTCTTTCTAAAACACACGAGTTATTGAATTCTTATAAATTAAATAGGATCTCAAAACAGTAACTATATTAAATAGTATCTGGATAGGTGAAAAAGTGAATTGAAATATTCAAATTTGAGGCAAGTTATAATTGCATGTTTTAGACAAATAAAAATGAGAATAATTAAGTGGGGCCGGGTATATGCGGGACAGGTTTATGTGGTCAGGGCTGAGCGGGTTGAAAATGCTAAAAAAGTGTTATGCGGGGCGGGGCGGCTTGCGGGGCGGCTTGCGGGGCAAGCTCAACCTGCCCCGCACCGCCCTTTTGCCACCCCTATCACTAAGACAATAAATCAGAATATGGTGGAACACAGTGTCTTTGGATTCTGGTCGACTGTAGCGAATGAAAGGAACTCTAGATGTTTTGAAGACAAAGCAAACTCCATACAGCAACTTTAACTGTACACTTCTGTCATCTTTTTCGGTGCTAGGAAGAATTTGTAAATGAAGCAGAGTCAATACTTTGCACCTTAGAATCCCAACAAGATTAAAAAGGGATTGTTCTTTTGGTTTTTACACACCTATACCTGTACATTTTTCAGCACTTTGTTGGTGCTTTTGTAATAATGAAATAACATTTTCTATAGAAAAGAATATGGAAGAGAAATATAGAATGAAGGACAAAAAGTATTACATGGTTGGACAATCAGACCTACATCCACAAGTGGAGAGGAGCAATTCACCATTTCAGTGATGGCTATTAAGAGTAAAGAAGAGCTAACACTCTAATAATCTCAGGAAGATCTAGAAGATAAAATAACCTCACATAATACTGTCACAAAATGCTCACAAAGAGGTTTACTCTTGGGCTCCTTTTTGGCATTCCAAATCCTCTGAACTTCTCATCCTTGTGTAAGGCGTTGAAGGCTCTTGACATGCATTTAGCAGCTATGATAAATAAAGTTGCTTCACTTCCCTAGTAGATTTAAAGTAACCCTGTGGCTTACCATTCATTAGAATAAAATACCTATTGTTAGAGATTTTTCTGTATACCACGTCAATTAGCTAATCTCCAAAACCCATTTTTAGGTTCCTTGTAAATTTTGCTATAGGATTAAAGATCTTCTTGGTACTCTCCACAATTGTAATTAGGAACCTGTAACTTGTTGTGGCAGGTTCTGATTTTTGTTTTGGAATAGAATACAAGTTGTTACCTTCTAAAAAAACAGAAAAAAAACCCATAAAACTCGATCATATGCTTTGTCATGTCCAGTGTATCATTGTTGGGTTACCCTTTATCTTAACATCATGCACAATTTTTTTGTACTAATAATATATTCTCAACTATGCTTCTTCCTTCCATAAAACCTGCTTGCTGGAGAGATGATTGTTGGCAGTAGGTATACCAGTCTTTCATCATTCATGTATGGTCTTGGAGAAAATCTTTCATGTGAGTGAGGTTGCTCAAACTGATCTGAAAAGGTCACAATATCCATTTTGGGCAATAACACGAGATTTATGCATGTGACAGTGACATGTCCCGGTAATTTATGTCATGGAAGTAAAAGTGCATCATTGTGAGCACATCTGTTTCAATTATGTACGAACAGTATCGGTAGAGCTTCCAGTGAAACCATGTGGACCACCTGAACTATCTACATTTAGACTTATAACAACTCTTCACATCTTCTATCTCTGGAATTTCATGAATCTAATTATTCAGTTCTGCATTAATCAGTTGAGGTATATGATTCAGTATCATCTGAAAGTTTGTTGGAATGTGATCCTCAACAATAAATATGTGTAAAATGTTAGCCTCCTGCATGATATCCTCCTCCTTATCCAGCAAGTTTTCATTAGGATCTTTAATCTTCTTGATTTGTAGTTTATTTTTCTTATCAGTTACATGAGAATGAAAGAACTAGGTGGTCTATTCACCATTTTGAAACCACTGCATTCCAGCTTTTTGCTTCCAAAACTTTTTCACCATATCATAGAATTTTAGCAGTTCAGCTTGTATATTTTTGTAGCCTCTTCCTGTTTCCATGGGTGGGATTTGGTTCAAATTCCAGCTCATGGACCTTAACTACTACTTCTAGAGTTTGCTATCTGTTTGAGTGTGTCACCATATAAATTGCTACTCCTTTTAGACAATGCCTTGCTGACCTTCTTCAAATTATTATGTACAATAACCATACGGTCTGGACCAAAGTTCCTTGACCAATTCTGTCTGACTACCTCCCAGAATGTCTCATGTTCCACCCAAAAATTCTTAGTTACTCTACTATCCTCTTTGTAATGCGTTAAGAGAGGTGCATGATTAGATCCTTGCTTAATTAAATGTGCCACTTCAAGGTTAGGAAACATACTCATATCTGATTATGCAAACATTTATCCAGTCTTTTAGAAATGCAAGTTTCATCTGATCTACCATTCAATCAAGGAGCATGCTACCAGTGAAGTGACTCCCATATCTGATAATTGGCATTCCTTTAGGCAGCAAGAAGTCTTCATTTTCAGCCCACCAAATCTATGATATTCATCCACAAGCACATTAAAATCTTCCCTTACCAACCAAGGAGTTCATATATGAGTAGATTGATCATAAAGTGCATCTCAAAGTTCTATTCTACTATCTCTTGTCATTACTAGCATATTTCTGTAATCTGAGTCGATTGTAATGTTAATACCTGGTCCATGTCCATCATTGTTTCAACTTGAAATCCATCTATCACAAACACCTAGATTTTCCCCTTGATATTATGCCTTTTTGTTCCCATTATTAATCACTGTCTGTACTACGTGTCTAACATGTTTAAAAGGCTCCATCAGAACTATAAAGTTGAAGTATTTTTGTCTATTCATCACGGCAACTCTTTCAAAGGCATGTTGAGTTTTTACCAACTTTATATTTATTAGTGAATTATTCATTGGTGAGTAGCTTTGGCACCTGCAAACCTTGCTTGCTTGCACGCTCCTTGCTGGCTTAGGAGGCACACTCTTATCTCTGGTTGCTTTTGTTTGTCTGTTTTCTTTCCTTGCTTTTTAGGTGCGTCTAAGTGATTGACCCTGTTGTTTCTGGCTTCTTCCTTTTGTATGCTTGTATTGTTTTACACTGTCACTTCATCATTATCTCCAATATCTATTTGATCCTCCTTGTTGTCTTCCCCGTTTAACCCCCCTGTTTCAAAATTCTTAGCAGCTATCTGGCCTTTGTCCATATATGTTTCTGGATCAGAGTTGTGTGATCTCTCCTGTATCCCTTATCTTTGTCTTGACTATGTGATGTGTCTGATGTATTTGATTGTGTCTCTTCATTCTCCTGCTCTTATGCTCTACTCCTGCCTTCTTGAACTCTTCTGCCAGTTACTCAGGTGGGTTTCTCCTCTGATGGTGCAACATCAGGATTTTTTTCATTGATAACATCCACAAATTTATTATCCTTCTCATAATGTATCATTTTCCCGTTATGATCCTAGATTTCTCCCGTGTCTTGTTTCTCTTGTTCCTGCTTGTCATTATTTTGCGTTAGCTCCCTCAGGCTTTGAATTATCAATATCAACGACACCATTGATATCTTTGTTCAACCTTCATAATATATTTTCAGAAGGGAAGTATGTTTTATGTTCCCTCTATAAATGAAACAAAGATAAAAAATATTGGCAAGTACAATTTCCCCTTTACTATTACTTTTTACACTTTATATATGGTGAGAACTCTAGGACCTTAAAATAGACACTTGTTGATCTTTTCTTAATAAGCAACTCTAATAAACTGATGTTTGCTTTTACGTTTCTTTTCCAGCTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAGGTTGTTAAGATTATGAAAGATATCTGCCTAGTTTATTTTATTTCATTCATGGATGTATTACGCACAATAGTCTTGATAGGAGGTATAGATATGTGTACTTATATCCATCATTTGAGATGATATCATGATAATGCACATGATAATATATTGTGTAGTAGATGGGTCAAATTTTTTTTTGAGAATGATAACTTAGTAGATGGGTCAATTTCATGACTCTCTCATTTAATTTTGGCAGAAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTG</genome_strand>
        <mrna_strand>GCGGCCAACGGAGAATGTCGATAGACAATGAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAATCAGTCCTAAGGCATTAGTTGTGCATGATCCATCGCTCAATCAAGGAGGCCAGATTAATTCCCCCGTTTTTGCTGCCAATCGTGACCCAATGCAAAATGGATCTGCTGAGGCAGTTATCTGCAATTCCAAG...........................................................................................................................................................................................................................................AAACTTGAGGATGCAATGCAGGAGATTGGTCTTAAAATTAAACACCATGAAGATAATGTCAAATTCTTGAAGTCTCAGAAGAACAGGTTGGATGATTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTTGGCAAGACTCATTCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTTCCATCTGTGTCCAGCTGCAAAAGCGTACTGGAACTCAGATTACTCATATTCCATTTATGAAGGACATGATAGGAATTGTTGCTTTGCTTTGGAAGGTTGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTCGGATTATCTTGGGCTCGAAACCATGTAGGGAGTTGTTTGCAGAACGCGTGATNGACATAAAGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339932" ref_strand="+" ref_description="SGN-E339932 [cTOF-3-D20]">
      <seq>ttcaattttggatatacgagttgctcttggcacgactaaatcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagctgccatctgtgtccagctgcaaaagcgtagtggaactcagattacacagattccatttatgaaggacataataggaattgttgctttgcttgggaaggtcgatgatgataatctcagcagatctctctcggattatcttgggctcgaaaccatgttaggagttgttttcaagacgcgtgatggagttaaagcactggaaacatatgatagggaaggtcgtataaataaaagttctggttttcatggacttggagcttcaattgggagacccttggatgacagatatctcgtaatctgtcttgaggacttaagaccatacactggtaaatttattgctgatgaccctcagaggaggcttgacataaagaagccaagatacctcaatgaggaaactcctcctggttttcttggttttgctgtcaatatgatcaatatcgacactgcgaacttatattgtgtcacaagcactggttatggcctgagagagaccctcttctatagactcttctcacgtttgcaagtatacaaaacaagggctgacatgctgcaggcactacctcttatagctgatggagccatatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11101" stop="13746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11401" g_stop="11420" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="258" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12887" g_stop="13078" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="450" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13176" g_stop="13446" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="721" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E339932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11401" e_stop="11420"/>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="13078"/>
          <exon e_start="13176" e_stop="13446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTTTGGATATACGAGGTACTGTTTACTTCTTTCCAAGTTAATTAGGTGTGCTGTAAAATGCATGTGCAAAATTTTAGAAGGTTACTGTAGCTATTTTGTTTTTAAGTATCCTAGAACATAATGCTTGTACTCTGTCTTTATGGGAAGGAAACAATCAAAATTTATAAGATTTTCATATCAAGGGACGTTTTTGTCATTTCAAGTAAATATGGATTTTGTGATGCCTATACCACAAAATATCATCCATCGGCTTGTTTGAGTAACAGAGGCCTAATATATTGTTCATGGGTTTAATGTTGTGTATTGCCTTTTTAGAAGCACTCCATGTAGACTATAATATTCACTTTAACAGTTTCTCTTTCCCTTTTTGCATATGCCTTGCACTGTTCCCTAATTTTGATTTCTTGTGCTTGTGGTGTATTGTAGTTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAGGTTTGATATTTTGATGATCTCTTCTTGCAAATGCTACTCATATTCTTTAGCACTTCTTTACTCTCTTTTCTTTTTCCTTTTTGAATTATTGTTTTAGACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCG</genome_strand>
        <mrna_strand>TTCAATTTTGGATATACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAG.................................................................................................ACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561116" ref_strand="+" ref_description="SGN-E561116 [20876]">
      <seq>gatgatcaatttggatatacgagtggtccttggcaagactcattcagcaagtgaaactggttctgaaaataaggaatcttccaatgggcagaatgaggaggagaccattgaacaaatcttaagttttgataaatctgcagcttccatctgtgtccagctgcaaaaggcgtactggaactcagattactcatattccatttatgaaggacatgataggaattgttgctttgcttgggaaggttgatgatgataatctcagcagaactctctcggattcatcttgggctcgtaaaccatgttaggagttgtttgcaagacgcgtgatggcacataaagcactggaaacatatgataaggaaggtcttataaataaaagttctaggtcttcatggacttggagcttcaattgggagacctttggatgaccgatatctcgtaatctgtcttgagaacgtaagaccatacaatggtaaatttattgctgatgaccctcaaggaggcttgagataaagaagcaagatacctcaatgaggaaactcctcctggttttcttggtttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11530" stop="13582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11832" g_stop="12069" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="262" r_length="239" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12887" g_stop="13078" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="458" r_length="196" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13176" g_stop="13282" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="562" r_length="104" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E561116" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11832" e_stop="12069"/>
          <exon e_start="12887" e_stop="13078"/>
          <exon e_start="13176" e_stop="13282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAA-GCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATT-ATCTTGGGCTCG-AAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGG-AGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCT-GGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAGGTTTGATATTTTGATGATCTCTTCTTGCAAATGCTACTCATATTCTTTAGCACTTCTTTACTCTCTTTTCTTTTTCCTTTTTGAATTATTGTTTTAGACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTG</genome_strand>
        <mrna_strand>TGGTCCTTGGCAAGACTCATTCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTTCCATCTGTGTCCAGCTGCAAAAGGCGTACTGGAACTCAGATTACTCATATTCCATTTATGAAGGACATGATAGGAATTGTTGCTTTGCTTGGGAAGGTTGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTCGGATTCATCTTGGGCTCGTAAACCATGTTAGGAGTTGTTTGCAAGACGCGTGATGGCACATAAAGCACTGGAAACATATGATAAGGAAGGTCTTATAAATAAAAGTTCTAGGTCTTCATGGACTTGGAGCTTCAATTGGGAGACCTTTGGATGACCGATATCTCGTAATCTGTCTTGAGAACGTAAG.................................................................................................ACCATACAATGGTAAATTTATTGCTGATGACCCTCA-AGGAGGCTTGAGATAAAGAAG-CAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGG-TTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620097" ref_strand="+" ref_description="SGN-E620097 [70794]">
      <seq>gattactcatattccatttatgaaggacatgataggaattgttgctttgcttgggaaggttgatgatgataatctcagcagaactctctcggattatcttgggctcgaaaccatgttaggagttgtttgcaagacgcgtgatggacataaagcactggaaacatatgataaggaaggtcttataaataaaagttctggtcttcatggacttggagcttcaattgggagacctttggatgaccgatatctcgtaatctgtcttgagaacttaagaccatacaatggtaaatttattgctgatgaccctcagaggaggcttgacataaagaagccaagatacctcaatgaggaaactcctcctggttttcttggttttgctgtcaatatgatcaatattgacactgcgaacttatattgtgttacaagcactggtcatggcctgagagagaccctcttctatagactcttctcacatttgcaagtatacaaaacaagggctgacatgctgcaggcactacctcttatagctgatggagccatatcgttggatggtgggatcataaagagtggtggtatatcttccctaggcgagagggaagtcaagatcaaatttccaaagagttctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11689" stop="14620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11989" g_stop="12069" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12887" g_stop="13078" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="273" r_length="192" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13176" g_stop="13496" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="594" r_length="321" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14287" g_stop="14320" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="628" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E620097" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11989" e_stop="12069"/>
          <exon e_start="12887" e_stop="13078"/>
          <exon e_start="13176" e_stop="13496"/>
          <exon e_start="14287" e_stop="14320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAGGTTAGTTCAACATAGCATCCAGTAATTGCTGGTGTTCTCTACAAAATATAGATAAAGTAGAAAAAAGAATAAGCTGTTCTTTGAGTCCACTTCATATGCTAGCTCTCTACAGCCATGTTCAAGAAATTATAGCATTTGTTCACTCTGTCCCAATCAAGATGACAGTATGTGGCTGCATGAAGGTGAAGACTTTTTTGAACCTGTGTGTGAAGGTGAAGACTTAAGACATAAAGTTTGATATGTTCTGGTCTTTGAATCCGTCACAGGTATACTTAAGAGTGATTAGGGTTTGGACGTTGCGAATTAGGATAGAAGGTTCGTTGGTAGTTGAACATCTCTCACTTTCTTACGAGATAGGCTTGGTGGTCGTACCAACTATATTATTAATAATAATAATAATAATATCTATATTTTACTTTTGTCCTCTCACTGGTTATCTTCTTGTGATTAAAACTTTTGAACCTTCACTTTGTAAAATTGACCTTGGAATAACCCCTTAGCATGTGACACACTTTTCTGTATGATAATGAGCATCTCTTTGCTTAAATTAGGTCTTGCCGTGACGCAGGAGTTAGAATCTGAATAGTTCTCTGCATTTTGAGAATATAAGATGAAAGAAGCATGGCATTTAGAGATTGTTAGAGTGGGTTAAAGTCCCACTATGGACGTGTAGTTTGCATATATGGACTTGGGCAATCCCTCCCTCATAAGCTATATTTTGGGGTTGAGTTAGGGCCAGATGCCATATCTTTACCAAAGAAGTTATGTAAGTTCACAGTATTATGACTGACATTTGTATTATAATCTTGAAATTCAGATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAGGTTTGATATTTTGATGATCTCTTCTTGCAAATGCTACTCATATTCTTTAGCACTTCTTTACTCTCTTTTCTTTTTCCTTTTTGAATTATTGTTTTAGACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAGGTAAAGAGGCTAGTCTTAAATAACGTCATTGTTTTATTCTCAACTTTTTCTTTCTTTCATAGTTCAACTTGTTTGTGAAGATACCCTAAAGAATTTATTGCCTATTAACTTGTTCCTTTTTGAGTATCAAGTAATATACTTGATCTCTAACTTTGCGCCTTAGTTGGAAATCTGATGTTATTTTGTGACCATGTTGCTTGACCTTTGTGGAGTGTAGTAGTTCGACCTTTCACTAACTTCCTCTTTCAATCTGCATAGAATAGTGTATGAAATCATGTTCTTCTCTTTCTATGTTCATTTCAAATGATTAACAGACCATTGGCATCTTTAATGAATCATTATTCTTTTTTAAAAAGGGGTGGGGGGGGGGTGTCTACAACACATTTTAGAAGTTAATCAGGAAACATTATCTATAATATTATATTCTGGTGGAGGAGTTTTCAGGATTTATCACGTTCAGAGTCTAACACAACTTTAGATTTACCTAAATGATGTTTGTCAATTATTGATATCTTAATCTCACTGTCTCCTAGGTGTTGTTCTTAATCCTACTCCTATGTTCATATATCATATGTATTTGAGTTTGTATGTTTATATATTAGATGTATTTGAATTTGCAGCACAATTTATTTTTCTTGTTGATTGCTTCATTGAATCATTATCCTCTCTACCTTCCCAAGGTAAGGGTAAGGCTGCCCAGACCCCACTTGTGGGATTTCACTGGATGTGTTGTTTGTTTGTGTTGCATCACTGAACCATTTGGATTCTGTCTTTCTCATGTACATTTTAGGGAAGTCAAGATCAAATTTCCAATGAGTTCTGGA</genome_strand>
        <mrna_strand>GATTACTCATATTCCATTTATGAAGGACATGATAGGAATTGTTGCTTTGCTTGGGAAGGTTGATGATGATAATCTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTGCAAGACGCGTGATGGACATAAAGCACTGGAAACATATGATAAGGAAGGTCTTATAAATAAAAGTTCTGGTCTTCATGGACTTGGAGCTTCAATTGGGAGACCTTTGGATGACCGATATCTCGTAATCTGTCTTGAGAACTTAAG.................................................................................................ACCATACAATGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATTGACACTGCGAACTTATATTGTGTTACAAGCACTGGTCATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACATTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTGGTGGTATATCTTCCCTAGGCGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCAAGATCAAATTTCCAAAGAGTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286111" ref_strand="+" ref_description="SGN-E286111 [cLES-13-D23]">
      <seq>ggaaacatatgatagggaaggtcgtataaataaaagttctggttttcatggacttggagcttcaattgggagacccttggatgacagatatctcgtaatctgtcttgaggacttaagaccatacactggtaaatttattgctgatgaccctcagaggaggcttgacataaagaagccaagatacctcaatgaggaaactcctcctggttttcttggttttgctgtcaatatgatcaatatcgacactgcgaacttatattgtgtcacaagcactggttatggcctgagagagaccctcttctatagactcttctcacgtttgcaagtatacaaaacaagggctgacatgctgcaggcactacctcttatagctgatggagccatatcgttggatggtgggatcataaagagtagtggtatatcctccctaggcgagagggaagtcaagatcaaatttccaatgagttctggaaggccgaatgtacctgaaaactattatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="12662" stop="14650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12962" g_stop="13078" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13176" g_stop="13496" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="438" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14287" g_stop="14350" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="502" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E286111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12962" e_stop="13078"/>
          <exon e_start="13176" e_stop="13496"/>
          <exon e_start="14287" e_stop="14350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAGGTTTGATATTTTGATGATCTCTTCTTGCAAATGCTACTCATATTCTTTAGCACTTCTTTACTCTCTTTTCTTTTTCCTTTTTGAATTATTGTTTTAGACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAGGTAAAGAGGCTAGTCTTAAATAACGTCATTGTTTTATTCTCAACTTTTTCTTTCTTTCATAGTTCAACTTGTTTGTGAAGATACCCTAAAGAATTTATTGCCTATTAACTTGTTCCTTTTTGAGTATCAAGTAATATACTTGATCTCTAACTTTGCGCCTTAGTTGGAAATCTGATGTTATTTTGTGACCATGTTGCTTGACCTTTGTGGAGTGTAGTAGTTCGACCTTTCACTAACTTCCTCTTTCAATCTGCATAGAATAGTGTATGAAATCATGTTCTTCTCTTTCTATGTTCATTTCAAATGATTAACAGACCATTGGCATCTTTAATGAATCATTATTCTTTTTTAAAAAGGGGTGGGGGGGGGGTGTCTACAACACATTTTAGAAGTTAATCAGGAAACATTATCTATAATATTATATTCTGGTGGAGGAGTTTTCAGGATTTATCACGTTCAGAGTCTAACACAACTTTAGATTTACCTAAATGATGTTTGTCAATTATTGATATCTTAATCTCACTGTCTCCTAGGTGTTGTTCTTAATCCTACTCCTATGTTCATATATCATATGTATTTGAGTTTGTATGTTTATATATTAGATGTATTTGAATTTGCAGCACAATTTATTTTTCTTGTTGATTGCTTCATTGAATCATTATCCTCTCTACCTTCCCAAGGTAAGGGTAAGGCTGCCCAGACCCCACTTGTGGGATTTCACTGGATGTGTTGTTTGTTTGTGTTGCATCACTGAACCATTTGGATTCTGTCTTTCTCATGTACATTTTAGGGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAG</genome_strand>
        <mrna_strand>GGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAG.................................................................................................ACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409262" ref_strand="+" ref_description="SGN-E409262 [PPI-13-H7]">
      <seq>gagagaccctcttctatagactcttctcacatttgcaagtatacaaaacaagggctgacatgctgcaggcactgcctcttatagctgatggagccatatcgttggatggtgggatcataaagagtggtggtatatcttccctaggcgagagggaagtcaagatcaaatttccaaagagttctggaaggccgaatgtacctgaaaactattatgagactgagaaccggatgaaggagctgaagtggaaaagggcaagatttgtggatgatttacagagagaacaaacattactggaccatgcaaagttcaactttgaaataaagaaacaagagtttgtcaagtttcttgcacaaagctcatcctatgtttcagcgcctcagtttccagcaggaggggagcggtcaactccgatatcatgattgtgtgggaactttgagaccatttctacattagacagatggatgttttatcagttgatttaaagctccagcttttaatttatattctggataatgacctcttggataatatgtgcagttcaatgtcatccttgtttgggtcaatttcagcattangtgcaggcttatgccaatctgattcatgtttaggtgattttcatagatgagtggtagttcgttcattcggacaggtatacagaaatgttctatcatgtacagcatcgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13046" stop="20886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13346" g_stop="13496" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14287" g_stop="14509" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="374" r_length="223" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14510" i_stop="14881" i_length="372">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14882" g_stop="14908" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="401" r_length="27" r_score="0.630"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="15575" i_length="667">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.59"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15576" g_stop="15621" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="444" r_length="43" r_score="0.587"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15622" i_stop="18019" i_length="2398">
            <donor d_prob="0.879" d_score="0.59"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18020" g_stop="18030" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="454" r_length="10" r_score="0.727"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18031" i_stop="19938" i_length="1908">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19939" g_stop="19976" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="490" r_length="36" r_score="0.605"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19977" i_stop="20262" i_length="286">
            <donor d_prob="0.155" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20263" g_stop="20329" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="553" r_length="63" r_score="0.612"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20330" i_stop="20451" i_length="122">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20452" g_stop="20587" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="685" r_length="132" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E409262" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13346" e_stop="13496"/>
          <exon e_start="14287" e_stop="14509"/>
          <exon e_start="14882" e_stop="14908"/>
          <exon e_start="15576" e_stop="15621"/>
          <exon e_start="18020" e_stop="18030"/>
          <exon e_start="19939" e_stop="19976"/>
          <exon e_start="20263" e_stop="20329"/>
          <exon e_start="20452" e_stop="20587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAGGTAAAGAGGCTAGTCTTAAATAACGTCATTGTTTTATTCTCAACTTTTTCTTTCTTTCATAGTTCAACTTGTTTGTGAAGATACCCTAAAGAATTTATTGCCTATTAACTTGTTCCTTTTTGAGTATCAAGTAATATACTTGATCTCTAACTTTGCGCCTTAGTTGGAAATCTGATGTTATTTTGTGACCATGTTGCTTGACCTTTGTGGAGTGTAGTAGTTCGACCTTTCACTAACTTCCTCTTTCAATCTGCATAGAATAGTGTATGAAATCATGTTCTTCTCTTTCTATGTTCATTTCAAATGATTAACAGACCATTGGCATCTTTAATGAATCATTATTCTTTTTTAAAAAGGGGTGGGGGGGGGGTGTCTACAACACATTTTAGAAGTTAATCAGGAAACATTATCTATAATATTATATTCTGGTGGAGGAGTTTTCAGGATTTATCACGTTCAGAGTCTAACACAACTTTAGATTTACCTAAATGATGTTTGTCAATTATTGATATCTTAATCTCACTGTCTCCTAGGTGTTGTTCTTAATCCTACTCCTATGTTCATATATCATATGTATTTGAGTTTGTATGTTTATATATTAGATGTATTTGAATTTGCAGCACAATTTATTTTTCTTGTTGATTGCTTCATTGAATCATTATCCTCTCTACCTTCCCAAGGTAAGGGTAAGGCTGCCCAGACCCCACTTGTGGGATTTCACTGGATGTGTTGTTTGTTTGTGTTGCATCACTGAACCATTTGGATTCTGTCTTTCTCATGTACATTTTAGGGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCGGTAATATTTTGTGTTTCTAGTTAGACTATGCATGCTAATCAATGATTTATTTGTAATAATTTGTGTTGTTGATGCCAAGCAGATTAAGTCATCTCTGGGTTGGTTTAGGTAGCTTGAGGATTTCTAACTTGATCCTCGTTGCCCTTACATCCTGCTTTAATTGATTGACGATGTCATTTGATACTGCAAGCTATGCTTAAATTTTATCATGCTAGCAGGGAACTCTGCATGGAAAGAGATGCTATTTTTTCCCCCTTTTTAGAACTTTAAAGCTTGTGCTTGCTTTTGTATGCCTGCTGCAGATGTTCTCTTTGAGCAGTCCAAAGATGTAGAGATATAAGTAAAGTGCCTTTTTTTTAGTTCAAGCCATTACCTTAGTTGTGGGCCTGAGGTGTGGGGGGTTTTTGCTTGAACCCGACCATGTTAATTAAATATCAAAAATATGAACCCAACAAGAAGGGGACATGGAACCTTGCCTCAAGTCTACAAGAAAAGATTGCACAACAATCTTCCTAGGATAGGAAGTAGCCTACAAACAATCATTTCCAAATATCCAAAAAGAACTTAAATTAACAAAGAAGTTACATTTTTCATTAACCATTGGTAATTTTTGCTACAACAATTTCGTGAGAAAAGGACGATAGTTTTTTTCTTGGATGCAGTAAAACTGTCCCTTTTCAATTGAAGATGTTCATATTCTAACCTCATTACAGGTGAGAGAGAACACATCTGCTTCTAGTCTGTGAATGTGAATAGCTCTTTCCGACAACTGACCAGTTCCTTCTTGTTTGGAGGTGCTAATAAATTTCCTATTTCCCCATCTACTGTTCCTGATAGTCTCTGAATAGGGAATGTCTTTGTTTGTCAATCTTGAATTGAATGTCGATGGTAGAGAGGCATTTATGAATCTGCCTATCTTGTTAGCAATTGTCTTCCACCCAACATTAAAAGTTAGTCAGGGATGACAAGTGCAAGAATTCGTGCACGGAGGTTTGGCATCTACATATTTGCTTCCTTGTATTTGGAGTCCTCTAGTAGCAATATATGAAATTTTGGACATTGTTAGGCAAGACAAATGATAAGCTTGGGAAGGATCTTTTGCAGAACATACTGTAAAAGAATGGTCTAATTTATGTGCACTTCTGCTTTAGTAATTTGTTACAAGAGGAGACGTGGATAAATAGAAAATTTAGTAGTTCTGGTATTAAACAGTCAATATGTTGCGATGTTTTTCCCAATTCCTGCATCAAATTTGTCTGTTCTAAGCTTTTAGGGTCGAAAAACTGTTTTCTGCATAATGTTTTGATCTCCTAGTAATAGTGGTAAGAATTCATGAGAGAAAATATTGAAGAAATGAGTGGAATATATGTCAATGGTACCAAATGAAGACTAAGTAGATCAAATGAAGACCAAGTATATTTTTATTTTTTTTGATAAAGTTTAAGTTGTATTCTTCAGCTTAAGGTATGCTGGCTACCTCCAAAAAGTAACAAGCTAAGACCATAATTACATAGATCCTAGGAAATCTACCAACTGTTCTACTACGTCTATACCCTCTTCTTTACACCCAAAAAACATGTTAATGCAATTTTCTTCTACTTTCTGCATAGTGTTAGTAATAGTCTCATGACACCTAAGGTTTCTTTCTCTCCAAATAGCCCACCAGACACAAGTAGGTACTATAGACCATTGGGTGTTGCCCCCCCCCCCCCCCTCCTGACCTCATCCAACAGCTCAAAAGATCAGCAGTATGTTCTGGCCATCACCTAGGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGGACGGTAACCCTACAGTGTAAGAATAAGTGGCTGTTAGTTTCTTCCTTCTCATGACAAAAGAAACATCTGGAAACAATCTTGAAGCCTCTTTTCTTGAGTTTTCCGGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAGCATTTCACCTTGGTTGGGTTGTTGCCCTTCCGTATTTGTTTCCATGGACCATGAACTCCTCCAGAGTGAGTCATGACCTCTCTCTTATACAGTGTACACACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCTGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCATTTAGATTTCTCCTGAAGGTGAGGTTCCATCCTTGAGGGGACCAAATTTCAGCAATTGTACAAAAAGAAACGAGATCGGGGAAGACTGAGTTTATTAGACACTCTTGTCCAATCCACTTGTCCTTCCAAAAAAATATTTTGTTATCCTCTCCCACCTTGACCACCAAATTCACCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACTTTTTACGTGCTATCTACTACATTAGACACCCACTCCCCAGTCTGCCCATACTTGTTGAGAATTGCTCCTCCATAATGCCTGATCTTCAACACGAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCTTCAGATTTTATATGCGACGACCCCCTGTTTTCTTGCTTACTAAGGTTGTCTGCCATTTAATTCAGTGTATTTTTTCCCCCCTTTGTTCCCCAACCATAGAAAATCACGCCTTAATTTATTCAACCTCTCTTCTACCTTTGCTGGTAAAGGGAAAAGTGACATAACATATGTAGGCAAAACATCCAGGACCGAATTGATCAGAGTGACTCTTCCTCCCAGAGATTAGATAGTTTGCCTTCCTATTAACCAACCTCTTCTCTGTCTTCTCAATGATTCCATCCCAAATCTCCAGCTCCTTGTGATTATTCCCCACAGGCATTCTGCATTCCCAGGTAAGTAGTTGGTAAGTGCTCTATCTTGCATTGCAAGATGCTTGCCAACATCTGAATATTTGCCACTTGACTTGGAAGATGCTGCTTTTCCCCCCAGTTCACAGCCAGTCCAGAGATGGCCTCAAAAATCACCAAAACAACTCTAATGTTACTAACTTGTTCTGTCTTTGCATCACAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATATGCAGATTGACCCCTGACTGATTACCAATGTTGAAACCCTTTATCCAGTCGTTCTGATTGACCACTCTAATCATACTGTTGAGACCCTCCTTAGCTAAAATAATTAGGAAAGGGAAGAGAGGATCTCCAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAAACCTATCCATTTAAGCCATTTGTCTCCAAACCTCTTCTGCCTTAGAATATTGAGTAGAAACTCCGAATTGACATGATCATATGCCTTTTCTATATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTTGAGTCTACCCACTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATAACGGCCATTTGGTGATTGTTCTCTAATTTGCTTATCACTTTCTTTAATCTCTCCGCCAACAGCTTACCATAGACCTTGTACACACCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCATAGCTCCTGTCTTCTTTGGGATTAGAGCCACATAGGTGGCGTTGAGACTCTTCCCTATTTTCATGGAATTGTCTCACTGCATTCATGAAGTCTGTCTTCAGTATCTCCCAAAAGTTTTGGAAAAAACTCATCGGAGAGCCATCTGGTCTGGGGGCCTTATCACTAGAACATGATTTTATGCGATTGAAAACTTCATCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGTTTTCCGCTCCCTGTACATTAAATTCTGGCCTCCATTGTTCCGTTTTTATGTAAAGATTTTGATAGTAATTGATTATGGTTCCTTTAATTTCTTCTGAATCTGTTAATGTAACCCCTTCACCATCAGCTTGTCAATGGTGTTGAATCTTTTGTGTGCTGTAGCATCCAGTGAAAATACTTGGTATTTTTGTCTATGCAATTTAGGAAGATCTGGATAACAGGTCCCTGGTGTATTACCTGGACTGTTTGTAAAGAAGAAATTGGAGTTGTTCAAATGACGAACATAGCGATACTACATAGTATAAACTGTACATGTTTGTGAAACTAGCTTTTTACCATAGAATGCAAATGCCGAATATGTAGAATCTATTGAGGAATCCCATCCGCACTTGATTGGAAAAATAAGTACAGTCGGTCTTGTTTTGATTCGGGAAAAAATCTTTTTAAAAGGCATCTTAGCCTAAGAGGACTGAGAACTATAAGGCAAGCACAAACTGCTCCCACATACACTCATGATAAGGGAGGGTGGGGACAACCAGGCCACCACTTTTACCCTTAAGAGGCTAACAGGAAGTAAGCTTCACCCAGAATGTTACTCAGAATTCCTATCAAGGCCTTACCCTACTATTTATTTCCTAAATTCCTTTCACCTCAACTAGCTAACTCAAAACAAATTGAGTGTAGCCATGGATTCTTTTCTAGGACTTCAAGATATCTAGAGAGTAGAAGAGGAGAAGCTCCAATCAGAGTTCTGAGATCATTGCAAATATGATGCAACAAACTTGGAACCACACTCTCGGTGTGGAAGATAGGAATGAGCCTCTTGTCCTTAAATGAAAGGGAACTAACTGCGTGGGTCGCCCCCATAGCTTTGTATTCCTATAGGAAGTAGAATAGAAGAGTCTATCAACTATTTGTTGTTTTAGAAGGCTTAAATAAATGTGGATGCAAAGTAGTGTGTTTTGATTTGGGGTGTTCTTTGTCTTCTTTTAGTGGAGATCTATTACGATGCCTACTGAAGATAGACTCCTATCTATGCTCAATGTTATCAAAAGCAAAAAGCGCAAAAAAGTTCTAGGTTCCATTCGGGCTTAAGCTCAAAGTGCAAATAGAGCATGGATTTTAATGCAAAATGCTGCAAAGAGAGAAAAAAATACAATTATATATATGCTCAATTCAAGACTAATAATTATAAGTATGAATGACAATAAAAAAAACAAAGAAATTGAAAAAAAAATACGATAAAGTGAATATCAGTTGTTTAGTGTCACCTTTTCATAAGAGGTTCATTGACAAGGAAAAGTATGCCTTAGAATCTTGATGATGAAACTAAAGGTCAAACGCTCAACACGTATTGGGTCTCACTTCAGGGCTTAAGCGCTCTATGCCAACTATTTTGTTTGGCTTTATTAATTATGTTTGCGTGTATGGCAAAAACCCTGTTTGAAAATGTTGACTACTTATGCTATTATAATACTGATAAAGGCTTATTTGTATAAATGTGCTGAAAATTTTATTCTTTCCTTTTTTTTTTCTTTCTATAGTGGAGATAGTCGCACAAAATGACAGACATATTATTAAAGGACTTTACCTTTGCTTCCTTATCCTTGATAGCTAGATGTGAACCTTCACGAGTAGAGAAAAAGCACTTGGTCTATCTTGCACCCCTCATGCAAGACAAATGTATAATATGATATTGACTCTGATGGACCTAGTAGATTCCATATTGTTGTAAGCTTTTTGGCATAAAATGCAAGATGATTTTAACTCTATATAGAATCCATTACAGAGATGCAAGGGAGGTAGTCAATAGTCTTACCTACATATTTCTCCTTCACTGCTATTCTTTATAATAAGGTTATCCGTCCTTATAAAATGAAGAAGAGGATATCAGTTTACACTTTTGTTTTGACAGGATGTATTATTTACCAGTTGTACCTTATGAAGTTTTGCTCTCAATGTATGACCTATTGTCTCCGTGTGTGCAGCCTCAGTTTCCAGCAGGAGGGGAGCGGTCAACTCCGATATCATGATTGTGTGGGAACTTTGAGACCATTTATCAGTTGATTTGAAGCTTCAGCTTTTATTTTATATTCTGGATAATGACCTCTTGGATAATATGTGCAGTTTGGGTTAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATAGATGAGTGGTTGTTCGTTCATTCAGAACAGGTATACAGAAAATGTTCTATCAATTTACAGCATCGTAC</genome_strand>
        <mrna_strand>GAGAGACCCTCTTCTATAGACTCTTCTCACATTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTGCCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTGGTGGTATATCTTCCCTAGGCGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCAAGATCAAATTTCCAAAGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGAACCGGATGAAGGAGCTGAAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGAGTTTGTCAAGTTTCTTGCACAAAGCTCATCCTATGTTTCAGCG....................................................................................................................................................................................................................................................................................................................................................................................CCTCAGTTTCCAGCAGGAGGGGAGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCCGATATCATGATTGTGTGGGAAC-TTTG-AGACCAT-TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TACATTAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AGATG-GATGTTTTATCAGTTGATTTAAAGCTCCAG..............................................................................................................................................................................................................................................................................................CTT-TTAATTTATATTCTGGAT-AATGACCTCTTGGAT-AATATGTGCAG-TTCAATGTCATCCTTG..........................................................................................................................TTTGGGTCAATTTCAGCATTANGTGCAGGCTTATGCCAATCTGATTCATGTTTAGGTG-ATTTTCATAGATGAGTGGTAGTTCGTTCATTC-GGACAGGTATACAG-AAATGTTCTATC-ATGTACAGCATCGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336487" ref_strand="+" ref_description="SGN-E336487 [cTOE-4-P13]">
      <seq>ttctatagactcttctcacgtttgcaagtatacaaaacaagggctgacatgctgcacgcactacctcttatagctgatggagccatatcgttggatggtgggatcataaagagtagtggtatatcctccctaggcgagagggaagtcaagatcaaatttccaatgagttctggaaggccgaatgtacctgaaaactattatgagactgagatccggttgaaggagctgcagtggaaaagggcaagatttgtggattatttacaagagagaacatacattactggaccatgcaaagttcaactttgaaataaagaaacaagactttggcaagtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13057" stop="14781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13357" g_stop="13496" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14287" g_stop="14481" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="336" r_length="196" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E336487" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13357" e_stop="13496"/>
          <exon e_start="14287" e_stop="14481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAGGTAAAGAGGCTAGTCTTAAATAACGTCATTGTTTTATTCTCAACTTTTTCTTTCTTTCATAGTTCAACTTGTTTGTGAAGATACCCTAAAGAATTTATTGCCTATTAACTTGTTCCTTTTTGAGTATCAAGTAATATACTTGATCTCTAACTTTGCGCCTTAGTTGGAAATCTGATGTTATTTTGTGACCATGTTGCTTGACCTTTGTGGAGTGTAGTAGTTCGACCTTTCACTAACTTCCTCTTTCAATCTGCATAGAATAGTGTATGAAATCATGTTCTTCTCTTTCTATGTTCATTTCAAATGATTAACAGACCATTGGCATCTTTAATGAATCATTATTCTTTTTTAAAAAGGGGTGGGGGGGGGGTGTCTACAACACATTTTAGAAGTTAATCAGGAAACATTATCTATAATATTATATTCTGGTGGAGGAGTTTTCAGGATTTATCACGTTCAGAGTCTAACACAACTTTAGATTTACCTAAATGATGTTTGTCAATTATTGATATCTTAATCTCACTGTCTCCTAGGTGTTGTTCTTAATCCTACTCCTATGTTCATATATCATATGTATTTGAGTTTGTATGTTTATATATTAGATGTATTTGAATTTGCAGCACAATTTATTTTTCTTGTTGATTGCTTCATTGAATCATTATCCTCTCTACCTTCCCAAGGTAAGGGTAAGGCTGCCCAGACCCCACTTGTGGGATTTCACTGGATGTGTTGTTTGTTTGTGTTGCATCACTGAACCATTTGGATTCTGTCTTTCTCATGTACATTTTAGGGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTAC-AGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCT</genome_strand>
        <mrna_strand>TTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCACGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATTATTTACAAGAGAGAACATACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGGCAAGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413946" ref_strand="-" ref_description="SGN-E413946 [STM-18-N15]">
      <seq>atttgcaagtatacaaancaagggctgacatgctgcaggcactacctcttatagctgatggagccatatcgttggatggtgggatcataaagagtggtggtatatcttccctaggcgagagggaagtcaagatcaaatttccaaagagttctggaaggccgaatgtacctgaaaactattatgagactgagaaccggatgaaggagctgaagtggaaaagggcaagatttgtggatgatttacagagagaacaaacattactggaccatgcaaagttcaactttgaaataaagaaacaagagtttgtcaagtttcttgcacaaagttcatcctatgtttcagcgcctcagtttccagcaggaggggagcggtcaactccgatatcatgattgtgtgggaactttgagaccatttctacattagacagatggatgttttatcagttgatttaaagctccagcttttaatttatattctggataatgacctcttggataatatgtgcagttcaatgtcatccttgtttgggtctatttcagcattaggtgcaggcttatgccaatctgattcatgtttaggtgaattttcatagatgagtggtagttcgttcattcggaacaggtatacagaaaatgttctatcaatgtgcagcatcgtattagttatgaaaattttgaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13077" stop="20902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13376" g_stop="13496" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14287" g_stop="14509" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="344" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14510" i_stop="14881" i_length="372">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14882" g_stop="14908" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="371" r_length="27" r_score="0.630"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="15575" i_length="667">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.59"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15576" g_stop="15621" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="414" r_length="43" r_score="0.587"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15622" i_stop="18019" i_length="2398">
            <donor d_prob="0.879" d_score="0.59"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18020" g_stop="18030" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="424" r_length="10" r_score="0.727"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18031" i_stop="19938" i_length="1908">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19939" g_stop="19976" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="460" r_length="36" r_score="0.605"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19977" i_stop="20262" i_length="286">
            <donor d_prob="0.155" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20263" g_stop="20329" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="523" r_length="63" r_score="0.612"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20330" i_stop="20451" i_length="122">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20452" g_stop="20609" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="681" r_length="158" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E413946" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413946" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13376" e_stop="13496"/>
          <exon e_start="14287" e_stop="14509"/>
          <exon e_start="14882" e_stop="14908"/>
          <exon e_start="15576" e_stop="15621"/>
          <exon e_start="18020" e_stop="18030"/>
          <exon e_start="19939" e_stop="19976"/>
          <exon e_start="20263" e_stop="20329"/>
          <exon e_start="20452" e_stop="20609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAGGTAAAGAGGCTAGTCTTAAATAACGTCATTGTTTTATTCTCAACTTTTTCTTTCTTTCATAGTTCAACTTGTTTGTGAAGATACCCTAAAGAATTTATTGCCTATTAACTTGTTCCTTTTTGAGTATCAAGTAATATACTTGATCTCTAACTTTGCGCCTTAGTTGGAAATCTGATGTTATTTTGTGACCATGTTGCTTGACCTTTGTGGAGTGTAGTAGTTCGACCTTTCACTAACTTCCTCTTTCAATCTGCATAGAATAGTGTATGAAATCATGTTCTTCTCTTTCTATGTTCATTTCAAATGATTAACAGACCATTGGCATCTTTAATGAATCATTATTCTTTTTTAAAAAGGGGTGGGGGGGGGGTGTCTACAACACATTTTAGAAGTTAATCAGGAAACATTATCTATAATATTATATTCTGGTGGAGGAGTTTTCAGGATTTATCACGTTCAGAGTCTAACACAACTTTAGATTTACCTAAATGATGTTTGTCAATTATTGATATCTTAATCTCACTGTCTCCTAGGTGTTGTTCTTAATCCTACTCCTATGTTCATATATCATATGTATTTGAGTTTGTATGTTTATATATTAGATGTATTTGAATTTGCAGCACAATTTATTTTTCTTGTTGATTGCTTCATTGAATCATTATCCTCTCTACCTTCCCAAGGTAAGGGTAAGGCTGCCCAGACCCCACTTGTGGGATTTCACTGGATGTGTTGTTTGTTTGTGTTGCATCACTGAACCATTTGGATTCTGTCTTTCTCATGTACATTTTAGGGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCGGTAATATTTTGTGTTTCTAGTTAGACTATGCATGCTAATCAATGATTTATTTGTAATAATTTGTGTTGTTGATGCCAAGCAGATTAAGTCATCTCTGGGTTGGTTTAGGTAGCTTGAGGATTTCTAACTTGATCCTCGTTGCCCTTACATCCTGCTTTAATTGATTGACGATGTCATTTGATACTGCAAGCTATGCTTAAATTTTATCATGCTAGCAGGGAACTCTGCATGGAAAGAGATGCTATTTTTTCCCCCTTTTTAGAACTTTAAAGCTTGTGCTTGCTTTTGTATGCCTGCTGCAGATGTTCTCTTTGAGCAGTCCAAAGATGTAGAGATATAAGTAAAGTGCCTTTTTTTTAGTTCAAGCCATTACCTTAGTTGTGGGCCTGAGGTGTGGGGGGTTTTTGCTTGAACCCGACCATGTTAATTAAATATCAAAAATATGAACCCAACAAGAAGGGGACATGGAACCTTGCCTCAAGTCTACAAGAAAAGATTGCACAACAATCTTCCTAGGATAGGAAGTAGCCTACAAACAATCATTTCCAAATATCCAAAAAGAACTTAAATTAACAAAGAAGTTACATTTTTCATTAACCATTGGTAATTTTTGCTACAACAATTTCGTGAGAAAAGGACGATAGTTTTTTTCTTGGATGCAGTAAAACTGTCCCTTTTCAATTGAAGATGTTCATATTCTAACCTCATTACAGGTGAGAGAGAACACATCTGCTTCTAGTCTGTGAATGTGAATAGCTCTTTCCGACAACTGACCAGTTCCTTCTTGTTTGGAGGTGCTAATAAATTTCCTATTTCCCCATCTACTGTTCCTGATAGTCTCTGAATAGGGAATGTCTTTGTTTGTCAATCTTGAATTGAATGTCGATGGTAGAGAGGCATTTATGAATCTGCCTATCTTGTTAGCAATTGTCTTCCACCCAACATTAAAAGTTAGTCAGGGATGACAAGTGCAAGAATTCGTGCACGGAGGTTTGGCATCTACATATTTGCTTCCTTGTATTTGGAGTCCTCTAGTAGCAATATATGAAATTTTGGACATTGTTAGGCAAGACAAATGATAAGCTTGGGAAGGATCTTTTGCAGAACATACTGTAAAAGAATGGTCTAATTTATGTGCACTTCTGCTTTAGTAATTTGTTACAAGAGGAGACGTGGATAAATAGAAAATTTAGTAGTTCTGGTATTAAACAGTCAATATGTTGCGATGTTTTTCCCAATTCCTGCATCAAATTTGTCTGTTCTAAGCTTTTAGGGTCGAAAAACTGTTTTCTGCATAATGTTTTGATCTCCTAGTAATAGTGGTAAGAATTCATGAGAGAAAATATTGAAGAAATGAGTGGAATATATGTCAATGGTACCAAATGAAGACTAAGTAGATCAAATGAAGACCAAGTATATTTTTATTTTTTTTGATAAAGTTTAAGTTGTATTCTTCAGCTTAAGGTATGCTGGCTACCTCCAAAAAGTAACAAGCTAAGACCATAATTACATAGATCCTAGGAAATCTACCAACTGTTCTACTACGTCTATACCCTCTTCTTTACACCCAAAAAACATGTTAATGCAATTTTCTTCTACTTTCTGCATAGTGTTAGTAATAGTCTCATGACACCTAAGGTTTCTTTCTCTCCAAATAGCCCACCAGACACAAGTAGGTACTATAGACCATTGGGTGTTGCCCCCCCCCCCCCCCTCCTGACCTCATCCAACAGCTCAAAAGATCAGCAGTATGTTCTGGCCATCACCTAGGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGGACGGTAACCCTACAGTGTAAGAATAAGTGGCTGTTAGTTTCTTCCTTCTCATGACAAAAGAAACATCTGGAAACAATCTTGAAGCCTCTTTTCTTGAGTTTTCCGGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAGCATTTCACCTTGGTTGGGTTGTTGCCCTTCCGTATTTGTTTCCATGGACCATGAACTCCTCCAGAGTGAGTCATGACCTCTCTCTTATACAGTGTACACACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCTGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCATTTAGATTTCTCCTGAAGGTGAGGTTCCATCCTTGAGGGGACCAAATTTCAGCAATTGTACAAAAAGAAACGAGATCGGGGAAGACTGAGTTTATTAGACACTCTTGTCCAATCCACTTGTCCTTCCAAAAAAATATTTTGTTATCCTCTCCCACCTTGACCACCAAATTCACCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACTTTTTACGTGCTATCTACTACATTAGACACCCACTCCCCAGTCTGCCCATACTTGTTGAGAATTGCTCCTCCATAATGCCTGATCTTCAACACGAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCTTCAGATTTTATATGCGACGACCCCCTGTTTTCTTGCTTACTAAGGTTGTCTGCCATTTAATTCAGTGTATTTTTTCCCCCCTTTGTTCCCCAACCATAGAAAATCACGCCTTAATTTATTCAACCTCTCTTCTACCTTTGCTGGTAAAGGGAAAAGTGACATAACATATGTAGGCAAAACATCCAGGACCGAATTGATCAGAGTGACTCTTCCTCCCAGAGATTAGATAGTTTGCCTTCCTATTAACCAACCTCTTCTCTGTCTTCTCAATGATTCCATCCCAAATCTCCAGCTCCTTGTGATTATTCCCCACAGGCATTCTGCATTCCCAGGTAAGTAGTTGGTAAGTGCTCTATCTTGCATTGCAAGATGCTTGCCAACATCTGAATATTTGCCACTTGACTTGGAAGATGCTGCTTTTCCCCCCAGTTCACAGCCAGTCCAGAGATGGCCTCAAAAATCACCAAAACAACTCTAATGTTACTAACTTGTTCTGTCTTTGCATCACAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATATGCAGATTGACCCCTGACTGATTACCAATGTTGAAACCCTTTATCCAGTCGTTCTGATTGACCACTCTAATCATACTGTTGAGACCCTCCTTAGCTAAAATAATTAGGAAAGGGAAGAGAGGATCTCCAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAAACCTATCCATTTAAGCCATTTGTCTCCAAACCTCTTCTGCCTTAGAATATTGAGTAGAAACTCCGAATTGACATGATCATATGCCTTTTCTATATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTTGAGTCTACCCACTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATAACGGCCATTTGGTGATTGTTCTCTAATTTGCTTATCACTTTCTTTAATCTCTCCGCCAACAGCTTACCATAGACCTTGTACACACCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCATAGCTCCTGTCTTCTTTGGGATTAGAGCCACATAGGTGGCGTTGAGACTCTTCCCTATTTTCATGGAATTGTCTCACTGCATTCATGAAGTCTGTCTTCAGTATCTCCCAAAAGTTTTGGAAAAAACTCATCGGAGAGCCATCTGGTCTGGGGGCCTTATCACTAGAACATGATTTTATGCGATTGAAAACTTCATCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGTTTTCCGCTCCCTGTACATTAAATTCTGGCCTCCATTGTTCCGTTTTTATGTAAAGATTTTGATAGTAATTGATTATGGTTCCTTTAATTTCTTCTGAATCTGTTAATGTAACCCCTTCACCATCAGCTTGTCAATGGTGTTGAATCTTTTGTGTGCTGTAGCATCCAGTGAAAATACTTGGTATTTTTGTCTATGCAATTTAGGAAGATCTGGATAACAGGTCCCTGGTGTATTACCTGGACTGTTTGTAAAGAAGAAATTGGAGTTGTTCAAATGACGAACATAGCGATACTACATAGTATAAACTGTACATGTTTGTGAAACTAGCTTTTTACCATAGAATGCAAATGCCGAATATGTAGAATCTATTGAGGAATCCCATCCGCACTTGATTGGAAAAATAAGTACAGTCGGTCTTGTTTTGATTCGGGAAAAAATCTTTTTAAAAGGCATCTTAGCCTAAGAGGACTGAGAACTATAAGGCAAGCACAAACTGCTCCCACATACACTCATGATAAGGGAGGGTGGGGACAACCAGGCCACCACTTTTACCCTTAAGAGGCTAACAGGAAGTAAGCTTCACCCAGAATGTTACTCAGAATTCCTATCAAGGCCTTACCCTACTATTTATTTCCTAAATTCCTTTCACCTCAACTAGCTAACTCAAAACAAATTGAGTGTAGCCATGGATTCTTTTCTAGGACTTCAAGATATCTAGAGAGTAGAAGAGGAGAAGCTCCAATCAGAGTTCTGAGATCATTGCAAATATGATGCAACAAACTTGGAACCACACTCTCGGTGTGGAAGATAGGAATGAGCCTCTTGTCCTTAAATGAAAGGGAACTAACTGCGTGGGTCGCCCCCATAGCTTTGTATTCCTATAGGAAGTAGAATAGAAGAGTCTATCAACTATTTGTTGTTTTAGAAGGCTTAAATAAATGTGGATGCAAAGTAGTGTGTTTTGATTTGGGGTGTTCTTTGTCTTCTTTTAGTGGAGATCTATTACGATGCCTACTGAAGATAGACTCCTATCTATGCTCAATGTTATCAAAAGCAAAAAGCGCAAAAAAGTTCTAGGTTCCATTCGGGCTTAAGCTCAAAGTGCAAATAGAGCATGGATTTTAATGCAAAATGCTGCAAAGAGAGAAAAAAATACAATTATATATATGCTCAATTCAAGACTAATAATTATAAGTATGAATGACAATAAAAAAAACAAAGAAATTGAAAAAAAAATACGATAAAGTGAATATCAGTTGTTTAGTGTCACCTTTTCATAAGAGGTTCATTGACAAGGAAAAGTATGCCTTAGAATCTTGATGATGAAACTAAAGGTCAAACGCTCAACACGTATTGGGTCTCACTTCAGGGCTTAAGCGCTCTATGCCAACTATTTTGTTTGGCTTTATTAATTATGTTTGCGTGTATGGCAAAAACCCTGTTTGAAAATGTTGACTACTTATGCTATTATAATACTGATAAAGGCTTATTTGTATAAATGTGCTGAAAATTTTATTCTTTCCTTTTTTTTTTCTTTCTATAGTGGAGATAGTCGCACAAAATGACAGACATATTATTAAAGGACTTTACCTTTGCTTCCTTATCCTTGATAGCTAGATGTGAACCTTCACGAGTAGAGAAAAAGCACTTGGTCTATCTTGCACCCCTCATGCAAGACAAATGTATAATATGATATTGACTCTGATGGACCTAGTAGATTCCATATTGTTGTAAGCTTTTTGGCATAAAATGCAAGATGATTTTAACTCTATATAGAATCCATTACAGAGATGCAAGGGAGGTAGTCAATAGTCTTACCTACATATTTCTCCTTCACTGCTATTCTTTATAATAAGGTTATCCGTCCTTATAAAATGAAGAAGAGGATATCAGTTTACACTTTTGTTTTGACAGGATGTATTATTTACCAGTTGTACCTTATGAAGTTTTGCTCTCAATGTATGACCTATTGTCTCCGTGTGTGCAGCCTCAGTTTCCAGCAGGAGGGGAGCGGTCAACTCCGATATCATGATTGTGTGGGAACTTTGAGACCATTTATCAGTTGATTTGAAGCTTCAGCTTTTATTTTATATTCTGGATAATGACCTCTTGGATAATATGTGCAGTTTGGGTTAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATAGATGAGTGGTTGTTCGTTCATTCAGAACAGGTATACAGAAAATGTTCTATCAATTTACAGCATCGTACTAGTTACTGAACTTTCGCTTAA</genome_strand>
        <mrna_strand>ATTTGCAAGTATACAAANCAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTGGTGGTATATCTTCCCTAGGCGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCAAGATCAAATTTCCAAAGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGAACCGGATGAAGGAGCTGAAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGAGTTTGTCAAGTTTCTTGCACAAAGTTCATCCTATGTTTCAGCG....................................................................................................................................................................................................................................................................................................................................................................................CCTCAGTTTCCAGCAGGAGGGGAGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCCGATATCATGATTGTGTGGGAAC-TTTG-AGACCAT-TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TACATTAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AGATG-GATGTTTTATCAGTTGATTTAAAGCTCCAG..............................................................................................................................................................................................................................................................................................CTT-TTAATTTATATTCTGGAT-AATGACCTCTTGGAT-AATATGTGCAG-TTCAATGTCATCCTTG..........................................................................................................................TTTGGGTCTATTTCAGCATTAGGTGCAGGCTTATGCCAATCTGATTCATGTTTAGGTGAATTTTCATAGATGAGTGGTAGTTCGTTCATTCGGAACAGGTATACAGAAAATGTTCTATCAATGTGCAGCATCGTATTAGTTATGAAAATTTTGAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456481" ref_strand="+" ref_description="SGN-E456481 [cSTS-29-L23]">
      <seq>caaacagaaagtcaaaggagaggtgagtccttggtcttgttccaaaggaagcagcggcattacctcctctaagaattccccttgtggtccctttattcattagtttcttcaaaggctgatttttcttttgtggggttctcttttcttgggaaagttgaattctgtaggtgattttttttagggtttatgttaaatacagaaacaaaatcaagaaaaagacatgaaaagggtgtccaatgatgaccaaagtttgagttttgttcatcagtaggttggagggttgttctgtttcctgtcaagaatcaattttgatggttgatgacaaggttatggaagacctgaatcagaagcaggggagttttgatggtcagcaagttttggtaccttttatggaaaatgtagtagctaatgctagtgtgataagttcaaagaaaaggggaagaccaaagggttctaagaataacaggagaagtgtggaagaaaatgtgggaacttcaggtacagctagtgtgatggatggcagtggacaaagggttcttatgaagaagaagaatagactagacaggccaaagggttccaagaatagcangagaagtggtgaagaaatgggggaatttcangtacagttagtgtgatggatggcagtagagaagggtttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41576" stop="42831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41876" g_stop="42531" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E456481" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41876" e_stop="42531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGAAGTCCAAGGGAGAGGTGAGTCCTTAGTGTTGTTCCAAAGGAAACAGCGGCATTA-CTGTTCTATGAATTCCCTTTGTGGTCCCTTTATTCATTAGTTTCTTCAAAGGCTGAGTTTTTTTTTTGTGGGGTTCACTTCTCTTGGG-AAGTTGAATTCTGTTGGTGATTTTTTTTAGGGTTTATGTTATAATACAGAAACAAAATCAAG-AAAAGACATGAAAAGGGTGTCCAATGATGACCAAAGTTTGAGTTTTGTTCATCAGTAGGTTGGAGGGTTGTTCTGTATTTTGTCAAGATTCAATTTTGATGGTTGATGACAACGTTATGGAAGACCTGAATCAGAAGCAGGGGAGTTTTGATGGTCAGCTCGTTTTGGTACCTTTTTTGGAAAATGTTGTAGCTAATGCTAGTGTGATAAGTTCAAAGAAAAGGGGAAGACCAAAGGGTTCTAAGAATAACAGGAGAAGTGTGGAAGAAAATGTGGGAACTTCAGGTACAGCTAGTGTGATGGATGACAGTGGACAAAGGGTTCTTAT------GAAGAATAGACTAGACAGGCCAAAGGGTTCCAAGAATAGCAGGAGAAGTGGTGAAGAAGATGGGGGAATTTCAGGTACAGTTAGTGTGATGGATGGCAGTAGAGAAGGGTTTCTTA</genome_strand>
        <mrna_strand>CAAACAGAAAGTCAAAGGAGAGGTGAGTCCTTGGTCTTGTTCCAAAGGAAGCAGCGGCATTACCTCCTCTAAGAATTCCCCTTGTGGTCCCTTTATTCATTAGTTTCTTCAAAGGCTGA-TTTTTCTTTTGTGGGGTTCTCTTTTCTTGGGAAAGTTGAATTCTGTAGGTGATTTTTTTTAGGGTTTATGTTA-AATACAGAAACAAAATCAAGAAAAAGACATGAAAAGGGTGTCCAATGATGACCAAAGTTTGAGTTTTGTTCATCAGTAGGTTGGAGGGTTGTTCTGTTTCCTGTCAAGAATCAATTTTGATGGTTGATGACAAGGTTATGGAAGACCTGAATCAGAAGCAGGGGAGTTTTGATGGTCAGCAAGTTTTGGTACCTTTTATGGAAAATGTAGTAGCTAATGCTAGTGTGATAAGTTCAAAGAAAAGGGGAAGACCAAAGGGTTCTAAGAATAACAGGAGAAGTGTGGAAGAAAATGTGGGAACTTCAGGTACAGCTAGTGTGATGGATGGCAGTGGACAAAGGGTTCTTATGAAGAAGAAGAATAGACTAGACAGGCCAAAGGGTTCCAAGAATAGCANGAGAAGTGGTGAAGAA-ATGGGGGAATTTCANGTACAGTTAGTGTGATGGATGGCAGTAGAGAAGGGTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736582" ref_strand="+" ref_description="SGN-E736582 [LC06BD01]">
      <seq>ggcatattcaaaaagagcaaaggtttgagctagaggttgaagcaaacattcgtggtgttcagctgacagaagaagacgtcatcatatcagccgttgatgatgatgatagagtgtattgtgataattgcaacacatccattgtcaatttccatagaagctgcccaaatcctgattgctcttacgatatctgtgtcaattgttgtcgggaactcagagatggtgcccagcatggagctactgaagtcagctcatctctcagcaagtcggtggaagctagtcgtatcacagcattgaagggaaacaatgcgccagatggctggagaagtccagagaccctccttgctaatgattgtccaactcacatgtccttcgatgttgctgagtggagagccaaatctgatggcagcataccctgtcctcctaaagagtgtggtggttgtggttcttctttaatggctctaaggcgtatcttcgaagcaaattgggtagaccaactaattcaaagtgctgaggccttaacatgcaactaccgccttccagatatagatttgtcgcatgggtgttcattttgtcttgctaccacttctgtccaagacggtgataaccgatgtcaagtaagagaagcatcttttaggaacaacagccatgataatcttctgtactgtcctaatgctgttcatgttgatggcaacgagtttgagcattttcaaatgcattggagggctggtgaacctgtaatagtttaaaatgcacaagctaaggcctctggtcttaactgggaaccaatggtaatgtggagggccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45943" stop="47981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46243" g_stop="46296" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46297" i_stop="46387" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46388" g_stop="46451" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="118" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46452" i_stop="46993" i_length="542">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46994" g_stop="47681" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="806" r_length="688" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E736582" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46243" e_stop="46296"/>
          <exon e_start="46388" e_stop="46451"/>
          <exon e_start="46994" e_stop="47681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATATTCAAAAAGAGCAAAGGTTTGAGCTAGAGGTTGAAGCAAACATTCGTGGTACTATTTTAATTCATTCGGATAATTTCAACTAGCTTGTTGGTGGTGGCTCAGAATGTTCAGTGCTGTTTCTGGTCTCTTTTGTTTTCAGGTGTTCAGCTGACAGAAGAAGACGTCATCATATCAGCCGTTGATGATGATGATAGAGTGTATTGGTATGGTCTCCAATATAATGATTTTTTGTTGCGCTATCTATGCACATACACCATGTATAATGTTTTATGAGTTATTATTCATCCATAGTGACATTAGACGTAAGTTGTTTCTTCATGGAGTAAACAGTGGGATTGATTGTTCAAATATCTTTCTGTTGAAGTCAATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAAGTTTCCAGAAGTTCTTTTATTAGTTTGAAATGTAGTTTCTGTTGAACATATTCTTTGTCTTTATTTGTTTATTCTGGAAGAAAGGATGTAAGCTTACACAGAATGTTTACTATTTCCAGAGCTCAGTTTTGTCATGACACAATAGCTGTAATGATGCATGGTTCCTTATTTGGCAGTGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGATTGCTCTTACGATATCTGTGTCAATTGTTGTCGGGAACTCAGAGATGGTGCCCAGCATGGAGCTACTGAAGTCAGCTCATCTCTCAGCAAGTCGGTGGAAGCTAGTCGTATCACAGCATTGAAGGGAAACAATGCGCCAGATGGCTGGAGAAGTCCAGAGACCCTCCTTGCTAATGATTGTCCAACTCACATGTCCTTCGATGTTGCTGAGTGGAGAGCCAAATCTGATGGCAGCATACCCTGTCCTCCTAAAGAGTGTGGTGGTTGTGGTTCTTCTTTAATGGCTCTAAGGCGTATCTTCGAAGCAAATTGGGTAGACCAACTAATTCAAAGTGCTGAGGCCTTAACATGCAACTACCGCCTTCCAGATATAGATTTGTCGCATGGGTGTTCATTTTGTCTTGCTACCACTTCTGTCCAAGACGGTGATAACCGATGTCAAGTAAGAGAAGCATCTTTTAGGAACAACAGCCATGATAATCTTCTGTACTGTCCTAATGCTGTTCATGTTGATGGCAACGAGTTTGAGCATTTTCAAATGCATTGGAGGGCTGGTGAACCTGTAATAGTTAGAAATGCACAAGCTAAGGCCTCTGGTCTTAGCTGGGAGCCAATGGTAATGTGGAGGGCCTTC</genome_strand>
        <mrna_strand>GGCATATTCAAAAAGAGCAAAGGTTTGAGCTAGAGGTTGAAGCAAACATTCGTG...........................................................................................GTGTTCAGCTGACAGAAGAAGACGTCATCATATCAGCCGTTGATGATGATGATAGAGTGTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGATTGCTCTTACGATATCTGTGTCAATTGTTGTCGGGAACTCAGAGATGGTGCCCAGCATGGAGCTACTGAAGTCAGCTCATCTCTCAGCAAGTCGGTGGAAGCTAGTCGTATCACAGCATTGAAGGGAAACAATGCGCCAGATGGCTGGAGAAGTCCAGAGACCCTCCTTGCTAATGATTGTCCAACTCACATGTCCTTCGATGTTGCTGAGTGGAGAGCCAAATCTGATGGCAGCATACCCTGTCCTCCTAAAGAGTGTGGTGGTTGTGGTTCTTCTTTAATGGCTCTAAGGCGTATCTTCGAAGCAAATTGGGTAGACCAACTAATTCAAAGTGCTGAGGCCTTAACATGCAACTACCGCCTTCCAGATATAGATTTGTCGCATGGGTGTTCATTTTGTCTTGCTACCACTTCTGTCCAAGACGGTGATAACCGATGTCAAGTAAGAGAAGCATCTTTTAGGAACAACAGCCATGATAATCTTCTGTACTGTCCTAATGCTGTTCATGTTGATGGCAACGAGTTTGAGCATTTTCAAATGCATTGGAGGGCTGGTGAACCTGTAATAGTTTAAAATGCACAAGCTAAGGCCTCTGGTCTTAACTGGGAACCAATGGTAATGTGGAGGGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308844" ref_strand="+" ref_description="SGN-E308844 [cLEY-23-A19]">
      <seq>tggtctccaatataatgattttttgttgcgctatctatgcacatacaccatgtataatgttttatgagttattattcatccatagtgacattagacgtaagttgtttcttcatggagtaaacagtgggattgattgttcaaatatctttctgttgaagtcaattttgtttcttatctgctctttaactcagcagctattgcttacacgatctgtttcatgaagctgcattgttcattcctcctgataatgtattgccttctactttgacacccaaggatttctttgaccttttgatttgtgaacactaattttctatggttattacataaagaaaggtgtgtctgtggacgcggtagctcaaagtttccagaagttcttttattagtttgaaatgtagtttctgttgaacatattctttgtctttatttgattattctggaagaaaggatgtaagcttacacagaatgtttactatttccagagctcagatttgtcatgacacaatagctgtaatgatgcatggttccttatttggcagtgataattgcaacacatccattgtcaatttccatagaagctgcccaaatcctgaatgctcttacgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46155" stop="47364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46455" g_stop="47064" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E308844" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46455" e_stop="47064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTCCAATATAATGATTTTTTGTTGCGCTATCTATGCACATACACCATGTATAATGTTTTATGAGTTATTATTCATCCATAGTGACATTAGACGTAAGTTGTTTCTTCATGGAGTAAACAGTGGGATTGATTGTTCAAATATCTTTCTGTTGAAGTCAATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAAGTTTCCAGAAGTTCTTTTATTAGTTTGAAATGTAGTTTCTGTTGAACATATTCTTTGTCTTTATTTGTTTATTCTGGAAGAAAGGATGTAAGCTTACACAGAATGTTTACTATTTCCAGAGCTCAGTTTTGTCATGACACAATAGCTGTAATGATGCATGGTTCCTTATTTGGCAGTGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGATTGCTCTTACGATATCT</genome_strand>
        <mrna_strand>TGGTCTCCAATATAATGATTTTTTGTTGCGCTATCTATGCACATACACCATGTATAATGTTTTATGAGTTATTATTCATCCATAGTGACATTAGACGTAAGTTGTTTCTTCATGGAGTAAACAGTGGGATTGATTGTTCAAATATCTTTCTGTTGAAGTCAATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAAGTTTCCAGAAGTTCTTTTATTAGTTTGAAATGTAGTTTCTGTTGAACATATTCTTTGTCTTTATTTGATTATTCTGGAAGAAAGGATGTAAGCTTACACAGAATGTTTACTATTTCCAGAGCTCAGATTTGTCATGACACAATAGCTGTAATGATGCATGGTTCCTTATTTGGCAGTGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGAATGCTCTTACGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611709" ref_strand="+" ref_description="SGN-E611709 [61463]">
      <seq>atcagacattttttttggaggagaagcataaaaaacagctgaaggaggagttcaacgttgagccatggacgtttgagcagtaccttggtgaagctgtttttattcctgcaggatgtcctcatcaagtgagaaatagacagtcatgtatcaaggttgctgttgactttgtatccccggaaaatgttcaagagtgtattcgcttgacggaggagtttcgcatgctacccaaaagccaccgatctaaggaagatatattggaggtgaagaagttggggctttatgctgctagtgttgctgttgatgaagccacaaacctgttgtcaaaacttaatgcacctcaatctcatgatgaattgcaacagctagaacatgctaccggaactgagagctctattgcagaatgcctggatatgggatccaccagctgtagtaaccaagactgaaggctgttcttgttaaatatgaagattttgaagttttagagaatatttatttgattctaaatcttttgattggattgtgaggcatttctgtttttgtatactttttttcgtctctcaaaaataatcccttgaggcattcttttagatgtacaaaaattttactttattggcggaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49876" stop="54504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50176" g_stop="50229" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50230" i_stop="50325" i_length="96">
            <donor d_prob="0.664" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50326" g_stop="50411" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="140" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50412" i_stop="51097" i_length="686">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51098" g_stop="51217" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="260" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51218" i_stop="52259" i_length="1042">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52260" g_stop="52330" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="331" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52331" i_stop="53930" i_length="1600">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53931" g_stop="54202" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="590" r_length="259" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E611709" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50176" e_stop="50229"/>
          <exon e_start="50326" e_stop="50411"/>
          <exon e_start="51098" e_stop="51217"/>
          <exon e_start="52260" e_stop="52330"/>
          <exon e_start="53931" e_stop="54202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGACATTTTATTTGGAGGAGAAGCATAAAAAACAGCTGAAGGAGGAGTTCAGTAAGAATCCTCTTTTCCTTAGTTGATTCTGAAAAACAGTAGGTAATGACTTTGCAAGGGTATCTAATCCCACCCTTTCTCTCTTGTGATTTTCAGACGTTGAGCCATGGACGTTTGAGCAATACCTTGGTGAAGCTGTTTTTATTCCTGCAGGATGTCCTCATCAAGTGAGAAATAGACAGGTGAAACTCCCAGTCTAACTATGCATACTTTGAAGTATCAGAGATTTTGTATTTCATCATTAGTATGGTTTTACCTGAATTTCCTGTGTGTTTGTTATGTTATCCAGTTGAATTTCACGGTGTTTTACCTCAAACTTATTGGGGGTAAAAGCACTATATTCTTCAAATTTATGCAAAAAGGAACATGTTTCAGAAAATCAAAACCTGTTATAGTTTGACAGTGGACGATGATTTATAAGACAGTATTAAAAATAGTACAACATTGCTATAGTAATAGAATTTTTAATTTGTTTCATGATTTCTAGCCAAATGTCTGCTATGCTTTATCTGAGCTTTGATAATTTAAGAAGCCTTGTGACTGAAGCAAACTCTGAGCTCTCTTCTTTTGGAATTTGATCTAAGTGAATCTGACTCTGGCTAGAACATTTTCCTGGGAGTGTATTTATACTGTGTAGCTCTTCTCAGGTCCTTGCAATTTCTTTCTTTCTCCAATGGGTTCTGGAATTAATACTATTTGAACTCACTTATAGAAATTAATGCTGCATGAGATGTAGTATCTGCAGTACTCTTTTTGCTGGTACTTCAATTGATGAAATATTTATTGCTGCTTCTATCTGTGTTCACATCTTAAAGTACTACACTTGGTATTGATTTGTCATCCATCTACCGCTATTGTACTTTGACAGTCATGTATCAAGGTTGCTGTTGACTTTGTATCCCCGGAAAATGTTCAAGAGTGTATTCGCTTGACGGAGGAGTTTCGCTTGCTACCCAAAGGCCACCGATCTAAGGAAGATATATTGGAGGTACATTCATTAGTGCATATTACAGCACAAATGCTATTTTGCATTCTGAATTCAACAGTCTCTTTCCATCACTATGTGTTAGTAAATCATAGGAAGATACTTTTATCTGCTTAAAAAGATTTTGACTGAGTATTAGTAGAGTAGGACCCCAAGCAAAATATCAGTGATGCTATGGGGATATTATCCTGAAGCTTTTCTGAAACATATAAACGAAATGCTAATGCATCTCCATCATTCCAATTCTACATTCTATATTCTATCCTTTACTTTTTCTTTTCAGTAGATTTATCCAACACATTTCCCATACATCAATATCATAGCTATGCCAAATAACTGGACAGTACATTCCTTTGCTGAAGAAATTAGAAGACAATTGCTAGGAGGAAGTGTAAGAAGGATCATTCATCTCTTCAATTAATTAATAGCAGGTGTTGCAGCGGTCATTAGGAAATGTTGTCTGATCTGAGAATCTTTTGGCTATCCTGCAGTTTTTATGGTCAAATGACAGAAACTTAATATTGTGCGTAGTGTAAAGCTTAAGCATTGTAGTCATCACTGGCATTCTGGAACCATGTTTTCTATGTTTAGCTCCTTGTTTTCCCTTTTTTGATTGGTTCGATCTTCATCCACGGGATATTTGTGTGTTCTGTGAGTTTGAACTGGCTTAAAAAACATATTTGACATTATGCGTCTATGATTCAAACTCTAGATATTGTCCATCCATCATTCTTTGCCCTGTATTTATGGTAGTCGAACGTAGGTATTAACGATTGTGACATTTGACAAGCTGCACTTATTCAATGTGAAATCAGACTTGATCGGTTAGTTCTTTCTGGTTTCTTGATTAACATTTGGCACTTGAATACTCAAAGTAAGTGATGGGTATCATTTCTGCTTGCTATTTTGCTGATCCCTGATATGAAACTGTAAATGTAAGAAACTACTTTTTAGTCACAGACATGTGCTTGAAAAATGTGATGCATCATGCTCTCGAAGTGTCCTTATCTTTTGTACAAGTGATTGTTTGATGATATTGTTATAGGTGAAGAAGTTGGGGCTTTATGCTGCTAGTGTTGCTGTTGATGAAGCCATAAACCTGTTGTCAAAACTTAAGTAAGTTTTTTGTTACTAGGTTATGTTCTTCATTGTTTTCCCATGTTTCTCTGTGGAAGGGCAAAAAACAACAGTGTGATCGATTACTGAATTTATGAATATCTGGGATTAACTAGGTTTGTGTATTTATGAGGCTTTCACGGAAGAAAGATGTCCTCCAGATTTATCTTTCAAAGGTCTCCTCAAAATTGAATAAAAATGCATACTTAGATTTTCTTGTGATTGTTACAAGTCTTAGTGATACTATTCTGTAATGGTCGTCAACCTTTACTGATAGAAACAACCACCTGGAGATCCCTGAGTTGAATGTCAGCTTCCACACTAGGTGTGAAGCTCATCTGCTCCAGCCTTAGTGATGTGGATTGTCTTGGTAATATGTGTTTGTCGGCTGGACAGGCTGCCTGGTGTATTGGCTGAGGTGCACACAAGCTAGCTACACCAGTATTTTCAAAAAAGAAATAGAAATAATACTCTCTGTAAAAGGTCAACAATATAACTCGTAACAGTTTCTGGAATGTCAGGTGTAATCACACTGCCAAAAGACAGAAGGATGTAAGTTTATTTTTCTACTTACATTTCATGAAAAACGAAGATTTCAGTTTATTCTGATTAGAAGAAATGAACTAAATTATTACACTTGAGAAGTAGGGCAGTGCGGATAAAAGTTCTATTTTTTTTAAAAATAAGCTACTAATTTTTTTTGTCAGCCTAACTGTTCTATTCTTGTAACCCTTGCATCTTCTTGATGCCTTTTACTGAATCTAGTTCATCAAGAAAAAAAGTTCTAATCTTTTGCCTGGATTTCTTCCAAAAAGTTTGGCTCTTTTTCTGTGGATCTCTTTCCAAAGGTTAAGCTGCCTACATCACATCCTTTAGGGGTGTGGCTCTTCCCTGTACCCTATGTGAGTGCAGGAGGCTTAATTGTGCCAGACTGCAATTCTTTTTCCATCCGAGTTTCAGCCAATGTTTTACTTTCATCAACTGCTTTGACCAACTGGATTAGAAATTTAGTCAGTCACTACTTAGACAGTTGAACTAGTTTAGGTGAAATTTAGACGTCACACTATAAGCCACAAGCATCTCCTGAATGACAGTAATTGATAATAATGTAGAGCTTTCAGTTGGAGCTCCAGGCGGACACCTTAAATGAAATGGACTCGAGCTCATGGTGATGCAACCACAATGTCTAGGCATCTAGGGCGATAGGAATGTCAATTGACGAAGTTTAATGTTTTCAAAATGGTGAATATAAATATCTACTGGACAAGTTGACCTGTTGTGGGGCGGTTGACCCAACTACCGTGTTTTTGCTTCTGAGACATAATGTTTTTTTCCCCAAATGTCAGTAAAGTGGTAGTTTTTCTTTGACATAGTGGCCAGCCTAAAGAAACTTTTAGCCCTGTGTGTCTTTTTAGCTGCTGCCTCGTTGTCCCAAGGAAAAGTTGTCACTAGAGAAGTGACGTACACAATTGAAAAATCCCCTCCCCCTGAATTTCTGTTGCAAAATATTGCCGTTAAATGGTTGATCTGAGGCATGTTGGAACTTGACTCCCTATTTTTCATACTCCTGGAATGAGTAACTCTGTATTTCGTTTGGCAGTGCTCCTCAGTCTTGTGATGAATTGCAACAGCAAGAACATGCTACCGGAACTGAGAGCTCTATTGCAGAAAGCCTGGATAATGGGATCCATCAGCTGTAGTGACCAAGACTGAAGGCTGCTCTTGTTAAATAATGAAGATTTTGAAGTTTTTAGAGAACATTTATTTGATTCTAAATCTTTTGATTGGATTGTGAGGAGGCATTTCTGTTTTTGTATACTTTTTTTTTTCGTCTCTCCAAAATAATAATCCTTTTGAGGCATTCTTTTAGAT</genome_strand>
        <mrna_strand>ATCAGACATTTTTTTTGGAGGAGAAGCATAAAAAACAGCTGAAGGAGGAGTTCA................................................................................................ACGTTGAGCCATGGACGTTTGAGCAGTACCTTGGTGAAGCTGTTTTTATTCCTGCAGGATGTCCTCATCAAGTGAGAAATAGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTATCAAGGTTGCTGTTGACTTTGTATCCCCGGAAAATGTTCAAGAGTGTATTCGCTTGACGGAGGAGTTTCGCATGCTACCCAAAAGCCACCGATCTAAGGAAGATATATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTTGGGGCTTTATGCTGCTAGTGTTGCTGTTGATGAAGCCACAAACCTGTTGTCAAAACTTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCTCAATCTCATGATGAATTGCAACAGCTAGAACATGCTACCGGAACTGAGAGCTCTATTGCAGAATGCCTGGAT-ATGGGATCCACCAGCTGTAGTAACCAAGACTGAAGGCTGTTCTTGTTAAAT-ATGAAGATTTTGAAG-TTTTAGAGAATATTTATTTGATTCTAAATCTTTTGATTGGATTGT---GAGGCATTTCTGTTTTTGTATAC---TTTTTTTCGTCTCT-C-AAA-AATAATCC-CTTGAGGCATTCTTTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574829" ref_strand="-" ref_description="SGN-E574829 [34358]">
      <seq>atcaagacattttttctgggaggagaagcataaaaaactacttgaaggaggagttcaacgttgagccatggacgtttgagcagtaccttggtgaactgtttttattcctgcaggatgtcctcatcaagtgagaaatagacagtcatgtatcaaggttgctgttgactttgtatccccggaaaatgttcaagagtgtattcgcttgacggaggagtttcgcatgctacccaaaagccaccgatctaaggaagatatattggaggtgaagaagttggggctttatgctgctagtgttgctgttgatgaagccacaaacctgttgtcaaaacttaatgcacctcaatctcatgatgaattgcaacagctagaacatgctaccggaactgagagctctattgcagaatgcctggatatgggatccaccagctgtagtaaccaagactgaaggctgttcttgttaaatatgaagattttgaagttttagagaatatttatttgattctaaatcttttgattggattgtgaggcatttctgtttttgtatactttttttcgtctctcaaaaataatcccttgaggcattcttttagatgtacaaaaatttactttagttgncggagggaaattncaagagaataaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49876" stop="54504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50181" g_stop="50229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="57" r_length="51" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50230" i_stop="50325" i_length="96">
            <donor d_prob="0.664" d_score="0.83"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50326" g_stop="50411" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="142" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50412" i_stop="51097" i_length="686">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51098" g_stop="51217" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="262" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51218" i_stop="52259" i_length="1042">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52260" g_stop="52330" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="333" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52331" i_stop="53930" i_length="1600">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53931" g_stop="54202" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="592" r_length="259" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E574829" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574829" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50181" e_stop="50229"/>
          <exon e_start="50326" e_stop="50411"/>
          <exon e_start="51098" e_stop="51217"/>
          <exon e_start="52260" e_stop="52330"/>
          <exon e_start="53931" e_stop="54202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTAT-TTGGAGGAGAAGCATAAAAAAC-AGCTGAAGGAGGAGTTCAGTAAGAATCCTCTTTTCCTTAGTTGATTCTGAAAAACAGTAGGTAATGACTTTGCAAGGGTATCTAATCCCACCCTTTCTCTCTTGTGATTTTCAGACGTTGAGCCATGGACGTTTGAGCAATACCTTGGTGAAGCTGTTTTTATTCCTGCAGGATGTCCTCATCAAGTGAGAAATAGACAGGTGAAACTCCCAGTCTAACTATGCATACTTTGAAGTATCAGAGATTTTGTATTTCATCATTAGTATGGTTTTACCTGAATTTCCTGTGTGTTTGTTATGTTATCCAGTTGAATTTCACGGTGTTTTACCTCAAACTTATTGGGGGTAAAAGCACTATATTCTTCAAATTTATGCAAAAAGGAACATGTTTCAGAAAATCAAAACCTGTTATAGTTTGACAGTGGACGATGATTTATAAGACAGTATTAAAAATAGTACAACATTGCTATAGTAATAGAATTTTTAATTTGTTTCATGATTTCTAGCCAAATGTCTGCTATGCTTTATCTGAGCTTTGATAATTTAAGAAGCCTTGTGACTGAAGCAAACTCTGAGCTCTCTTCTTTTGGAATTTGATCTAAGTGAATCTGACTCTGGCTAGAACATTTTCCTGGGAGTGTATTTATACTGTGTAGCTCTTCTCAGGTCCTTGCAATTTCTTTCTTTCTCCAATGGGTTCTGGAATTAATACTATTTGAACTCACTTATAGAAATTAATGCTGCATGAGATGTAGTATCTGCAGTACTCTTTTTGCTGGTACTTCAATTGATGAAATATTTATTGCTGCTTCTATCTGTGTTCACATCTTAAAGTACTACACTTGGTATTGATTTGTCATCCATCTACCGCTATTGTACTTTGACAGTCATGTATCAAGGTTGCTGTTGACTTTGTATCCCCGGAAAATGTTCAAGAGTGTATTCGCTTGACGGAGGAGTTTCGCTTGCTACCCAAAGGCCACCGATCTAAGGAAGATATATTGGAGGTACATTCATTAGTGCATATTACAGCACAAATGCTATTTTGCATTCTGAATTCAACAGTCTCTTTCCATCACTATGTGTTAGTAAATCATAGGAAGATACTTTTATCTGCTTAAAAAGATTTTGACTGAGTATTAGTAGAGTAGGACCCCAAGCAAAATATCAGTGATGCTATGGGGATATTATCCTGAAGCTTTTCTGAAACATATAAACGAAATGCTAATGCATCTCCATCATTCCAATTCTACATTCTATATTCTATCCTTTACTTTTTCTTTTCAGTAGATTTATCCAACACATTTCCCATACATCAATATCATAGCTATGCCAAATAACTGGACAGTACATTCCTTTGCTGAAGAAATTAGAAGACAATTGCTAGGAGGAAGTGTAAGAAGGATCATTCATCTCTTCAATTAATTAATAGCAGGTGTTGCAGCGGTCATTAGGAAATGTTGTCTGATCTGAGAATCTTTTGGCTATCCTGCAGTTTTTATGGTCAAATGACAGAAACTTAATATTGTGCGTAGTGTAAAGCTTAAGCATTGTAGTCATCACTGGCATTCTGGAACCATGTTTTCTATGTTTAGCTCCTTGTTTTCCCTTTTTTGATTGGTTCGATCTTCATCCACGGGATATTTGTGTGTTCTGTGAGTTTGAACTGGCTTAAAAAACATATTTGACATTATGCGTCTATGATTCAAACTCTAGATATTGTCCATCCATCATTCTTTGCCCTGTATTTATGGTAGTCGAACGTAGGTATTAACGATTGTGACATTTGACAAGCTGCACTTATTCAATGTGAAATCAGACTTGATCGGTTAGTTCTTTCTGGTTTCTTGATTAACATTTGGCACTTGAATACTCAAAGTAAGTGATGGGTATCATTTCTGCTTGCTATTTTGCTGATCCCTGATATGAAACTGTAAATGTAAGAAACTACTTTTTAGTCACAGACATGTGCTTGAAAAATGTGATGCATCATGCTCTCGAAGTGTCCTTATCTTTTGTACAAGTGATTGTTTGATGATATTGTTATAGGTGAAGAAGTTGGGGCTTTATGCTGCTAGTGTTGCTGTTGATGAAGCCATAAACCTGTTGTCAAAACTTAAGTAAGTTTTTTGTTACTAGGTTATGTTCTTCATTGTTTTCCCATGTTTCTCTGTGGAAGGGCAAAAAACAACAGTGTGATCGATTACTGAATTTATGAATATCTGGGATTAACTAGGTTTGTGTATTTATGAGGCTTTCACGGAAGAAAGATGTCCTCCAGATTTATCTTTCAAAGGTCTCCTCAAAATTGAATAAAAATGCATACTTAGATTTTCTTGTGATTGTTACAAGTCTTAGTGATACTATTCTGTAATGGTCGTCAACCTTTACTGATAGAAACAACCACCTGGAGATCCCTGAGTTGAATGTCAGCTTCCACACTAGGTGTGAAGCTCATCTGCTCCAGCCTTAGTGATGTGGATTGTCTTGGTAATATGTGTTTGTCGGCTGGACAGGCTGCCTGGTGTATTGGCTGAGGTGCACACAAGCTAGCTACACCAGTATTTTCAAAAAAGAAATAGAAATAATACTCTCTGTAAAAGGTCAACAATATAACTCGTAACAGTTTCTGGAATGTCAGGTGTAATCACACTGCCAAAAGACAGAAGGATGTAAGTTTATTTTTCTACTTACATTTCATGAAAAACGAAGATTTCAGTTTATTCTGATTAGAAGAAATGAACTAAATTATTACACTTGAGAAGTAGGGCAGTGCGGATAAAAGTTCTATTTTTTTTAAAAATAAGCTACTAATTTTTTTTGTCAGCCTAACTGTTCTATTCTTGTAACCCTTGCATCTTCTTGATGCCTTTTACTGAATCTAGTTCATCAAGAAAAAAAGTTCTAATCTTTTGCCTGGATTTCTTCCAAAAAGTTTGGCTCTTTTTCTGTGGATCTCTTTCCAAAGGTTAAGCTGCCTACATCACATCCTTTAGGGGTGTGGCTCTTCCCTGTACCCTATGTGAGTGCAGGAGGCTTAATTGTGCCAGACTGCAATTCTTTTTCCATCCGAGTTTCAGCCAATGTTTTACTTTCATCAACTGCTTTGACCAACTGGATTAGAAATTTAGTCAGTCACTACTTAGACAGTTGAACTAGTTTAGGTGAAATTTAGACGTCACACTATAAGCCACAAGCATCTCCTGAATGACAGTAATTGATAATAATGTAGAGCTTTCAGTTGGAGCTCCAGGCGGACACCTTAAATGAAATGGACTCGAGCTCATGGTGATGCAACCACAATGTCTAGGCATCTAGGGCGATAGGAATGTCAATTGACGAAGTTTAATGTTTTCAAAATGGTGAATATAAATATCTACTGGACAAGTTGACCTGTTGTGGGGCGGTTGACCCAACTACCGTGTTTTTGCTTCTGAGACATAATGTTTTTTTCCCCAAATGTCAGTAAAGTGGTAGTTTTTCTTTGACATAGTGGCCAGCCTAAAGAAACTTTTAGCCCTGTGTGTCTTTTTAGCTGCTGCCTCGTTGTCCCAAGGAAAAGTTGTCACTAGAGAAGTGACGTACACAATTGAAAAATCCCCTCCCCCTGAATTTCTGTTGCAAAATATTGCCGTTAAATGGTTGATCTGAGGCATGTTGGAACTTGACTCCCTATTTTTCATACTCCTGGAATGAGTAACTCTGTATTTCGTTTGGCAGTGCTCCTCAGTCTTGTGATGAATTGCAACAGCAAGAACATGCTACCGGAACTGAGAGCTCTATTGCAGAAAGCCTGGATAATGGGATCCATCAGCTGTAGTGACCAAGACTGAAGGCTGCTCTTGTTAAATAATGAAGATTTTGAAGTTTTTAGAGAACATTTATTTGATTCTAAATCTTTTGATTGGATTGTGAGGAGGCATTTCTGTTTTTGTATACTTTTTTTTTTCGTCTCTCCAAAATAATAATCCTTTTGAGGCATTCTTTTAGAT</genome_strand>
        <mrna_strand>ACATTTTTTCTGGGAGGAGAAGCATAAAAAACTACTTGAAGGAGGAGTTCA................................................................................................ACGTTGAGCCATGGACGTTTGAGCAGTACCTTGGTGAA-CTGTTTTTATTCCTGCAGGATGTCCTCATCAAGTGAGAAATAGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTATCAAGGTTGCTGTTGACTTTGTATCCCCGGAAAATGTTCAAGAGTGTATTCGCTTGACGGAGGAGTTTCGCATGCTACCCAAAAGCCACCGATCTAAGGAAGATATATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTTGGGGCTTTATGCTGCTAGTGTTGCTGTTGATGAAGCCACAAACCTGTTGTCAAAACTTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCTCAATCTCATGATGAATTGCAACAGCTAGAACATGCTACCGGAACTGAGAGCTCTATTGCAGAATGCCTGGAT-ATGGGATCCACCAGCTGTAGTAACCAAGACTGAAGGCTGTTCTTGTTAAAT-ATGAAGATTTTGAAG-TTTTAGAGAATATTTATTTGATTCTAAATCTTTTGATTGGATTGT---GAGGCATTTCTGTTTTTGTATAC---TTTTTTTCGTCTCT-C-AAA-AATAATCC-CTTGAGGCATTCTTTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331172" ref_strand="+" ref_description="SGN-E331172 [cTOD-6-N12]">
      <seq>caaatgtatcactcaatccatgggcaaatgtatcactcttttggatattaaaatttaattcttctgtgttgctctagaaaatcctcattactcctccactaccaaaatcctctctataaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagttcttcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54578" stop="55675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54878" g_stop="55375" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="528" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E331172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54878" e_stop="55375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTA</genome_strand>
        <mrna_strand>TATCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302312" ref_strand="+" ref_description="SGN-E302312 [cLEW-19-H20]">
      <seq>tcactcttttggatattaaaatttaattcttctgtgttgctctagaaaatcctcattactcctccactaccaaaatcctctctataaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaaacctgtatcgtttcgtggtgaatttgttgaccgatgttatgataatttgaagaattcaagtaggaagagtaaggagaaaattaatatgtctagtaactatgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54580" stop="55785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54880" g_stop="55485" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E302312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54880" e_stop="55485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGA</genome_strand>
        <mrna_strand>TCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343212" ref_strand="+" ref_description="SGN-E343212 [cTOF-17-F18]">
      <seq>ttttggatattaaaatttaatgcttctgtgttgctctagaaaatcctcattactcctccactaccaaaatcctctctataaacaagaattttctcaatttttcatttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgctcatacatataaaaagaaagaatctttacttcgatttcttgtttttctttgttggggcgtagagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattctcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagtccttctttattcaaacctgtatcgttaccaggtgaatttgttgaccgatgctatgataatttgaagaattcaagtattaagagtaaggagaaaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54586" stop="55765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54886" g_stop="55465" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E343212" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54886" e_stop="55465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAAT</genome_strand>
        <mrna_strand>TTTTGGATATTAAAATTTAATGCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCATTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGCTCATACATATAAAAAGAAAGAATCTTTACTTCGATTTCTTGTTTTTCTTTGTTGGGGCGTAGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTCTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTCCTTCTTTATTCAAACCTGTATCGTTACCAGGTGAATTTGTTGACCGATGCTATGATAATTTGAAGAATTCAAGTATTAAGAGTAAGGAGAAAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358512" ref_strand="+" ref_description="SGN-E358512 [cLHT-22-C21]">
      <seq>tttggatattaaaatttaatttttctgtgttgttctagaaaatcctcattgctcctccactaccaaaatactgtctgccaacaagaatccctcaatttttcagttttctttgtctgatgggtcatctcccaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttagaagatttcattacataatcatctgtatcttgttcagacatataaaaagaaagaatctttactttgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgacatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtaatcgaaccaactgggataatttggtctcaaattctggtcatagttcttctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54587" stop="55677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54887" g_stop="55377" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E358512" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54887" e_stop="55377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCC---T------TTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATT</genome_strand>
        <mrna_strand>TTTGGATATTAAAATTTAATTTTTCTGTGTTGTTCTAGAAAATCCTCATTGCTCCTCCACTACCAAAATACTGTCTGCCAACAAGAA-TCCCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCCCAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTAGAAGATTTCATTACATAATCATCTGTATCTTGTTCAGACATATAAAAAGAAAGAATCTTTACTTTGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGACATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAATCGAACCAACTGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478777" ref_strand="+" ref_description="SGN-E478777 [cSTD-7-A3]">
      <seq>attcttctgtgttgctctagaaaatcctcattcctcctccactaccaaaatcctctgtaaacaagaatttcttaatttcagttttctttgtctgatgggtcatctcccaaaccccacaaaagtctcctctcttccgacaaacctcaaatcttgaaattgtaacccatacccacatcccctttagaagatttcattacataatcatctgtatcttgttcagacatataaaaagaaagaatctttacttagttttcttgtttttctttgatgggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtcgagacatacggcctctatggctattgcccacttcagatattttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtaatcgaaccaaatgggataatttgggctcaaattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54605" stop="55658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54905" g_stop="55358" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E478777" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54905" e_stop="55358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACAT-CCC--T------TTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTG-TTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTG</genome_strand>
        <mrna_strand>ATTCTTCTGTGTTGCTCTAGAAAATCCTCATTCCTCCTCCACTACCAAAAT-C-CTCTGTAAACAAGAA-TTTCTTAA--TTTCAGTTTTCTTTGTCTGATGGGTCATCTCCCAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACCTCAAATCTTGAAATTGTAACCCATACCCACATCCCCTTTAGAAGATTTCATTACATAATCATCTGTATCTTGTTCAGACATATAAAAAGAAAGAATCTTTACTTAGTTTTCTTGTTTTTCTTTGATGGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCGAGACATACGGCCTCTATGGCTATTGCCCACTTCAGATATTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAATCGAACCAAATGGGATAATTTGGGCTCAAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301858" ref_strand="+" ref_description="SGN-E301858 [cLEW-25-I21]">
      <seq>gaaaatcctcattactcctccactaccaaaatcctctctataaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaaacctgtatcgtttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54624" stop="55696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54924" g_stop="55396" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E301858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54924" e_stop="55396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGT</genome_strand>
        <mrna_strand>GAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374036" ref_strand="+" ref_description="SGN-E374036 [TUS-33-G21]">
      <seq>aaaatcctcattactcctccactaccaaaatcctctctataaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaaacctgtatcgtttcgtggtgaatttgttgaccgatgttatgataatttgaagaattcaagtaggaagagtaaggagaaaattaatatgtctagtaactatggggaacctcctgagatttggcaaccacctggtgaggggattgtggttcgtcctggtgtgaaatttgttcaggtgggtgaaggggaagtttctggttcgggttcgggttctggatgtgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54625" stop="55903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54925" g_stop="55603" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E374036" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54925" e_stop="55603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTT</genome_strand>
        <mrna_strand>AAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTTCTGGTTCGGGTTCGGGTTCTGGATGTGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305791" ref_strand="+" ref_description="SGN-E305791 [cLEX-14-D3]">
      <seq>aaaatcctcattactcctccactaccaaaatcctctctataaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaaacctgtatcgtttcgtggtgaatttgttgaccgatgttatgataatttgaagaattcaagtaggaagagtaaggagaaaattaatatgtctagtaactatggggaacctcctgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54625" stop="55797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54925" g_stop="55497" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E305791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54925" e_stop="55497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGAT</genome_strand>
        <mrna_strand>AAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317725" ref_strand="+" ref_description="SGN-E317725 [cTOB-8-N13]">
      <seq>aaaatcctcattactcctccactaccaaaatcctctctataaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgctttcttggttttctttgttggggcggtgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54625" stop="55611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54925" g_stop="55311" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E317725" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54925" e_stop="55311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTT</genome_strand>
        <mrna_strand>AAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGCTTTCTTGGTTTTCTTTGTTGGGGCGGTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328969" ref_strand="+" ref_description="SGN-E328969 [cTOC-24-N22]">
      <seq>aaaatcctctctataaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaaacctgtatcgtttcgtggtgaatttgttgaccgatgttatgataatttgaagaattcaagtaggaagagtaaggagaaaattaatatgtctagtaactatggggaacctcctgagatttggcaaccacctggtgaggggattgtggttcgtcctggtgtgaaatttgttcaggtgggtgaaggggaagttcctggttcgggttcgggttctggaagtgggtttggttccgggtcaaaagatgggtcttggggtggatccaatttgggtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54651" stop="55953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54951" g_stop="55653" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E328969" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54951" e_stop="55653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCA</genome_strand>
        <mrna_strand>AAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAAGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303105" ref_strand="+" ref_description="SGN-E303105 [cLEX-5-G7]">
      <seq>agagagatctagtctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaaacctgtatcgtttcgtggtgaatttgttgaccgatgttatgataatttgaagaattcaagtaggaagagtaaggagaaaattaatatgtctagtaactatggggaacctcctgagatttggcaaccacctggtgagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54677" stop="55820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54965" g_stop="55520" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E303105" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54965" e_stop="55520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGA</genome_strand>
        <mrna_strand>AGAGAGATCTAGTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336340" ref_strand="+" ref_description="SGN-E336340 [cTOE-10-N15]">
      <seq>aaacaagaattttctcaatttttcagttttctttgtctgatgggtcatctcttaaaccccacaaaagtctcctctcttccgacaaacatcaaatcttgaaattgttactcatacccacatcccttttcattacataatcatctctatcttgttcatacatataaaaagaaagaatctttacttcgttttcttgtttttctttgttggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtctagacgtacggcttctatggctattacccacttcagatactttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtagtcgaaccaaatgggataatttgggctcaaattctggtcatagttcttctttattcaaacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54665" stop="55686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54965" g_stop="55384" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E336340" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54965" e_stop="55384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCT</genome_strand>
        <mrna_strand>AAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGGCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561579" ref_strand="+" ref_description="SGN-E561579 [16985]">
      <seq>ttgaaattgtaacccatacccacatcccctttagaagatttcattacataatcatctgtatcttgttcagacatataaaaagaaagaatctttacttagttttcttggtttttctttgttgggggcgttgagtttccactgaactaagccgatatggcagctgtacttagatcgaaatcgtcgagacatacggcctctatggctattgcccacttcagatattttatcatcaatgattttcacacgggtcatttacccaatttccatttgtgtaatcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaagtctgtatcgtttcgtggtgaatttgttgaccgatgttatgataatttgaagaattcacagagttcaagtaggaagagtaaggagaaaattagtatgtctagtaactatggggaacctcctgagatttggcaaccacctggtgaggggattgtggttcgtcctgggtgtgaagtttgttcaggtgggtgaaggggaaggtcctggttcgggttctggaggtgggtttggttcggggtcaaaagatgggtcttggggtggatccaatttgggaacccaatttcccnacacaaagcaactgtgtaaaggacttgataagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54789" stop="55998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55089" g_stop="55698" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="654" r_length="616" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E561579" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55089" e_stop="55698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTT-GTTTTTCTTTGTT-GGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATT--CA-AG-T--AG---GAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCT-GGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGAGGACTTGATAAGTTTGT</genome_strand>
        <mrna_strand>TTTCATTACATAATCATCTGTATCTTGTTCAGACATATAAAAAGAAAGAATCTTTACTTAGTTTTCTTGGTTTTTCTTTGTTGGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCGAGACATACGGCCTCTATGGCTATTGCCCACTTCAGATATTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAATCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAGTCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCACAGAGTTCAAGTAGGAAGAGTAAGGAGAAAATTAGTATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGGTGTGAAGTTTGTTCAGGTGGGTGAAGGGGAAGGTCC----T--GGTTCGGGTTCTGGAGGTGGGTTTGGTTCGGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGAACCCAATTTCCCNACACAAAGCAACTGTGTAAAGGACTTGATAAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604883" ref_strand="+" ref_description="SGN-E604883 [75023]">
      <seq>atcgaaccaaatgggataatttggtctcaaattctggtcatagttcttctttattcaagtctgtatcgttcgtggtgaatttgttgaccgatgttatgataatttgaagaattcacagagttcaagtaggaagagtaaggagaaaattagtatgtctagtaactatggggaacctcctgagatttggcaaccacctggtgaggggattgtggttcgtcctggtgtgaagtttgttcaggtgggtgaaggggaaggtcctggttcgggttctggaggtgggtttggttcggggtcaaaagatgggtcttggggtggatccaatttgggaacccaatttcccacaccaaagcaactgtgtaaaggacttgataagtttgtaattggacaggagagagctaaaaaggttctgtctgtcgccgtatataatcattacaagacgaatatataatgactcttcacataagtggcctgcaggacacatgacggtacgtgaaaaaacagatggaatagaaaatgagtctgttggagcttgagaagagtaacatccttttaatggggccaacaggttcagggaaaaactttacttgccaagaccttagctcgattggtgaatgttcccttttgtcatagcagaatgcttacgagactaactcagggcaggatattgttggggaaagatgtggaactctattctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55024" stop="57186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55323" g_stop="55723" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55930" i_length="207">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55931" g_stop="55992" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="466" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55993" i_stop="56166" i_length="174">
            <donor d_prob="0.176" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56167" g_stop="56267" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="571" r_length="105" r_score="0.881"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56268" i_stop="56805" i_length="538">
            <donor d_prob="0.949" d_score="0.94"/>
            <acceptor a_prob="0.884" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56806" g_stop="56885" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="655" r_length="84" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E604883" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55323" e_stop="55723"/>
          <exon e_start="55931" e_stop="55992"/>
          <exon e_start="56167" e_stop="56267"/>
          <exon e_start="56806" e_stop="56885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAG-------A-A-TTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAGGTAATCTTTTTAAAAGTTCACTCTTTTGAAACTGATAATTCTGGGTACTCACAGATAAAGATAGTCTAGTCCTTGATTTTATGCTTGCTTTATTGATTATAATGTGATTAGAAGAGCTCATTTTGTGTCCAAGGGTGCTTGAGATCTAGTAAAAGAGACTATTCTTGAGCTGCTAGAGTGACTTTCTTTATCATTATGTGATTGCAGGTTCTATCTGTCGCCGTATATAATCATTACAAGA-GAATATATAATGACTCTTCACATAAGTGGTTAGTTTTGAACACTGCATAATTCCCATGTTTTTTCACCTACCCCCTTCCCTGTATTTTATGTTTTCTCCATGTGACATGGAAGATGAAGCTATTTGGACCATTGGAACTCAGAGATGGAAATACCTATACCTTATCTATTCTTCTAATGTATCGTTTAAATGTGGTACCAAGGCCTGCAGGA-A-ATGACAGTA-GTGAAAAAACAGATGGAGTAGAAAATGAATCTG-TGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAGGTAATCTTTATAATTGTCCATTGCGCTTCTTGAGGTCTCAAAATGTTGGAAAGAAACATTTCAGATAAACACGCCCTTGAAGTATGGAACTTAAGATTCACCAGCAGAGAAATCTGTTTTCCCCTTTCTCCTGCTTTCTTTTTGTTTTTAATTATAAAATTTTTCTGAAGATACTGCGTGGTGCTATTTACTTATAGTGGTGATATGATGGTCTCAAGCTAATGCTCATTCTCTGATTCATAATATAACTATACATGTGCGCTGATATGAGATAACTTTGACTATGTATATTAAAGCTTAGACTGTGATGATGAGGGTGACATGATTTTTGCTTTTTGACTATGATTTAGTAATTTTAATGCATCGCTCTCGTTTATCTATCCCATAAAGTTATCCTGGCTCCCTGCTTTTGTCATTGGAGGGGGTAGGGGTGAATGAGTAGAGCTCTAACATTATTGTTATCATCGTTGATAGCGTGATCCTTATTTTAATAAAAAATACTTTTTCACTTGAGTATTTTGTGTCATATCAAGGACAGGG-AAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCC-TTTGTAATAGCAG-ATGC-TACGACACTAACTCAG</genome_strand>
        <mrna_strand>ATCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAGTCTGTATCG-TTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCACAGAGTTCAAGTAGGAAGAGTAAGGAGAAAATTAGTATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAGTTTGTTCAGGTGGGTGAAGGGGAAGGTCC----T--GGTTCGGGTTCTGGAGGTGGGTTTGGTTCGGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGAACCCAATTTCCCACACCAAAGCAACTGTGTAAAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAG...............................................................................................................................................................................................................GTTCTGTCTGTCGCCGTATATAATCATTACAAGACGAATATATAATGACTCTTCACATAAGTG..............................................................................................................................................................................GCCTGCAGGACACATGACGGTACGTGAAAAAACAGATGGAATAGAAAATGAGTCTGTTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGGCCAACAGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTTGTCATAGCAGAATGCTTACGAGACTAACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419555" ref_strand="+" ref_description="SGN-E419555 [STM-29-F24]">
      <seq>ttctgggtcaaaagatgggtcttggggtggatccaatttgggtacccaatttcccacaccaaagcaactgtgtaaaggacttgataagtttgtaattggacaggagagagctaaaaaggttctgtctgtcgccgtatataatcattacaagagaatatataatgactcttcacataagtggcctgtaggaaatgacagtagtgaaaaaacagatggaatagaaaatgagtctgtggagcttgagaagagtaacatccttttaatggggccaacaggttcagggaaaactttacttgccaagaccttagctcgattggtgaatgttccctttgttatagcagatgctacgacactaactcaggcaggatatgttggggaagatgtggaatctattctatataagctcctcactgttgctgactacaatgtagcagctgctcagcaaggcatagtgtatattgatgaagttgacaagatcacgaaaaaggctgaaagcctcaacattagtagagatgtttcaggagagggcgtccagcaggcattgttgaagatgcttgaaggaacaattgtcaatgtgccggagaagggagctcggaagcaccctagaggggataatattcagattgataccaaagacattctctttatatgtggntggagccttcattgacttggagaaaacaatctctgaaaggcgccaagattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55306" stop="60527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55606" g_stop="55723" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55930" i_length="207">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55931" g_stop="55992" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="180" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55993" i_stop="56166" i_length="174">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56167" g_stop="56267" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="281" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56268" i_stop="56805" i_length="538">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56806" g_stop="56885" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="361" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58269" g_stop="58319" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="412" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58506" g_stop="58580" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="487" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58685" g_stop="58762" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="565" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="59610" g_stop="59666" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="622" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="60156" g_stop="60226" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="694" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86">
            <donor d_prob="0.851" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="60313" g_stop="60325" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="707" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E419555" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55606" e_stop="55723"/>
          <exon e_start="55931" e_stop="55992"/>
          <exon e_start="56167" e_stop="56267"/>
          <exon e_start="56806" e_stop="56885"/>
          <exon e_start="58269" e_stop="58319"/>
          <exon e_start="58506" e_stop="58580"/>
          <exon e_start="58685" e_stop="58762"/>
          <exon e_start="59610" e_stop="59666"/>
          <exon e_start="60156" e_stop="60226"/>
          <exon e_start="60313" e_stop="60325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAGGTAATCTTTTTAAAAGTTCACTCTTTTGAAACTGATAATTCTGGGTACTCACAGATAAAGATAGTCTAGTCCTTGATTTTATGCTTGCTTTATTGATTATAATGTGATTAGAAGAGCTCATTTTGTGTCCAAGGGTGCTTGAGATCTAGTAAAAGAGACTATTCTTGAGCTGCTAGAGTGACTTTCTTTATCATTATGTGATTGCAGGTTCTATCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTGGTTAGTTTTGAACACTGCATAATTCCCATGTTTTTTCACCTACCCCCTTCCCTGTATTTTATGTTTTCTCCATGTGACATGGAAGATGAAGCTATTTGGACCATTGGAACTCAGAGATGGAAATACCTATACCTTATCTATTCTTCTAATGTATCGTTTAAATGTGGTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAGGTAATCTTTATAATTGTCCATTGCGCTTCTTGAGGTCTCAAAATGTTGGAAAGAAACATTTCAGATAAACACGCCCTTGAAGTATGGAACTTAAGATTCACCAGCAGAGAAATCTGTTTTCCCCTTTCTCCTGCTTTCTTTTTGTTTTTAATTATAAAATTTTTCTGAAGATACTGCGTGGTGCTATTTACTTATAGTGGTGATATGATGGTCTCAAGCTAATGCTCATTCTCTGATTCATAATATAACTATACATGTGCGCTGATATGAGATAACTTTGACTATGTATATTAAAGCTTAGACTGTGATGATGAGGGTGACATGATTTTTGCTTTTTGACTATGATTTAGTAATTTTAATGCATCGCTCTCGTTTATCTATCCCATAAAGTTATCCTGGCTCCCTGCTTTTGTCATTGGAGGGGGTAGGGGTGAATGAGTAGAGCTCTAACATTATTGTTATCATCGTTGATAGCGTGATCCTTATTTTAATAAAAAATACTTTTTCACTTGAGTATTTTGTGTCATATCAAGGACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGTATGTTGTTATCCTGTCACCTTGGTAGAGATAGGAAACAACTCTCAGCTTAAAAATCTATAAATAGGATTAATATTTTTCTAAATCTTGTTCTCTTAAATGTAAATTATGTCAACACTGTCCTTAAAGTTCAAATTTCTTATTTCAATACATAATTTCCCCCCTTGTATATTTGTTACTCCTGCAAATATATTGTGTGTGTTAAATTGTTTGAAACTTTCTTGAGCCGGCAGTCTATCGGAAACAACCTAGTTACCGCACAAAGGTAGGGGTAAGGTCTGTGAATTCCCCACCCTCCCCAGACCACACTTGTAATATACTAGGTATGTTGTTTATTAATTATTTGCAAGATCCCATAAGCCTTGGGAACCGTTTGCAGATGGTCTGTTTGAGGCCAGAGTTAGTCCGTGTAAGGTGAGAAATCTGAATTAGCTCTTTTGGAGCTACAACTGAGCTGATTTTGCTTTTGATTCAGTGAAAACGTATAATGGAGGAGACCCGTCTTCATCTATTGAAGGCGAGAGTGTTTTGAGGATTAGTGTTGGTATTGAAGACCGTGTAGTACATTGGTGCACGTGAGGAACTTTTGTGGGGACAAAATCATGTTAATGCCTTAGAAGCTAATATGAAAAAGATGAGAAAAGAAGTTGAAAGTAGTGAGGTTGTAAGAAGATGGAGAATAAAGAATAGCTGCTCTCACAATGATTAGGCAAACCCATGTTTCACAGTTCAACTTCTTGGAACTGTGAATTTCATGAGTCTACTTTTTCAGAGGGTTATTACTATGAACCTGAAGACAAAAATAGATAGGCTGTTCTTCATTTTGACATTCCAAGACTATTGACACCTAAGTATGTGTATAGATCAATGACACTTGGTATCCGAACTTTAGGCCATCATTAAAAGAGATGCCACTGTTAATCTAAGTCTACCTTGAGATTAAATAACTAGAATTTCCTGGTGGTTAGGTTAATTTAGTCTGAACATGTTTACTATTCCCTGCCTACCCTGTTTCCAGTGCTTAATCGCTGAAGTCTTTCATAGAAGTAGAGTAGCAGAAAACAAGTGATGTTATCATTAAACATAGGGATATTTCTTTTGGGTGATCTAGTTTACAAAATAGCCAACAAATGTTTAGGTTTTGTATATCCAAGTATAATATGCATATACTTTACCATAAGATACATACCTATACATAATTAGTGTACAGGTTTTGTATATTTCAGCCTTATTGGTAAGTAAGTTTTGGATGAACTGTATATATTGGTAAATTCTCCATTAAAAATAGTTGTCACCTTGATAAGAGTCCTGAAACTGTGGGTTTCCATTCAATGGTATACTCGTTCCAAAAAAGCCAGTCAATGATAATACTTTTGTCTGCAGGCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTAAGTACTAAACCTGTTGAGTCTTTTTATCTATAATTTATTGTTCTATTCATGTTTTATTTTCTTTGTCTTGAGAAAAATGTTCTTGCTTCTTAATCAGAATGCATGATTTTGTGCATCCTTTCCAGTGATTTCTAGCCTTGATATGACTTCTCATTTTATTACTCTGGTATGATATTATTGCAGGTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAGGTTGATATTGACTTATTGATTGTTATTTTCTTTTTCAGATTTAACTTCACTAGCGACTTCTCATGTGTCAGTTTAGCTGATTCCTCCTATACTGATATTTCCAGGCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACAGTAAGTGTATAGCTTAGTTTTTTGCATGTTAATGGTGAATTGATCGCCTCAATCTTTACCACGTGTGGATATTGTTTAATGTTGCAAATGTAGAAGCAACTTTGGCTGCTGATGGCTCATCAACATTAGATCTAGACAAATAGCTTTTGTATATGATGATAACCAGATTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTGAAAGTTGGAGGCTTAGTGTCGGACACTTTATCTAACCAAACTATATAAGCTGATTTTTTTTAGATCCCATGGACTGGCTGAATGTAGCTCATCTTCTATGATATAACTTTTATCTTGCTGGTGTCCTTGGTACTTGTTTCATGTCTTTTTCAGTTTCCTGTAACACAATCTGCATGTGCTAACCGTGAGTCCTTTTGCCCTTTCTGCTAGTTTATTCCAGAAGTAGTAGTGGTGGTTTTCTCTTGTAATATTCTTTCCTCTTTCTTCTTTATTTTGAAGATATTTATTGGAATTACTTGAATCTTTCGATAAAGAAGGAATGGTTTCTTCTTCTTTTTTCTCCTTTCGATTTTCACATTTCTATTATTATATATCTATCCTTATTCAAATGACCTCCAGATGTACAAAACAATTGTTGTGATCAAAGAATGGTCTGACTATTTTAACGACTAGATTTGCGATTGCGGATCATGGTTTGATTTATAGTTCAGTCGTAATGATTGGAATAATTAATGTTTACATCATTTGTTTTTATAATTAGGTTTCTGTTACTTATCCCAAAATTAATAATAACAATCAGCTTTCTGTTGCAGATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAGGTAGGTTATGAAAACTTCTCATTTTGGGATTAAGATATTTATTCGCAATCAAGAAGAATTTGGAGTGTCCTGGGATTAAAAATGTTTATTTTTGGCTTTGTACTGTTAATTGTTTATATGGATGTCTTCAAATGGATAAAGATTTGTATCCAATAAGATAATTTGATGTGCTCATGAGCTTGAGTTTAGGATGAATTAATTTACCTTCGTAATTATTTACTGATTTTATAACTGAGGTATAGTGACTGTTTCATTTGGCCTTCTGTTAGTGGGTGTATGATAGCTGTTCTTGAAGAACTAGTAAAGTGATCTTTGACTAGTTCTTTTGTCTAAGATTATCTTCATAGTTATTTGTTAACTCTTTGCGCTTTTATATCGTTGGATGACCCTGATTCTTTTGGCATGCTAGGTTTACAGTTGATTTGATGTTTCAGATATATTTCTTTGAGCAAAAAGTTTCTTATATCATAATTGTTTATGTCATTACAGATTGATACCAAAGATATTCTCTTTATATGTGG-TGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAGGTCTTGCTACTTCCACGTCGTAGTTTTATCTCTTTCCTTTAGTCTGATATTCACCTTATTCCTGATATACTTGTTCTTGTTTTCAGGCGCCAAGATTCT</genome_strand>
        <mrna_strand>TTCTGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAAAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAG...............................................................................................................................................................................................................GTTCTGTCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTG..............................................................................................................................................................................GCCTGTAGGAAATGACAGTAGTGAAAAAACAGATGGAATAGAAAATGAGTCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGGCCAACAGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTTATAGCAGATGCTACGACACTAACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT..........................................................................................................................................................................................GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAGATCACGAAAAAG........................................................................................................GCTGAAAGCCTCAACATTAGTAGAGATGTTTCAGGAGAGGGCGTCCAGCAGGCATTGTTGAAGATGCTTGAAGGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATACCAAAGACATTCTCTTTATATGTGGNTGGAGCCTTCATTGACTTGGAGAAAACAATCTCTGAAAG......................................................................................GCGCCAAGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444376" ref_strand="+" ref_description="SGN-E444376 [cSTA-42-P13]">
      <seq>ttctgggtcaaaagatgggtcttggggtggatccaatttgggtacccaatttcccacaccaaagcaactgtgtaaaggacttgataagtttgtaattggacaggagagagctaaaaaggttctgtctgtcgccgtatataatcattacaagagaatatataatgactcttcacataagtggcctgtaggaaatgacagtagtgaaaaaacagatggaatagaaaatgagtctgtggagcttgagaagagtaacatccttttaatggggccaacaggttcagggaaaactttacttgccaagaccttagctcgattggtgaatgttccctttgttatagcagatgctacgacactaactcangcaggatatgttggggaagatgtggaatctattctatataagctcctcactgttgctgactacaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55306" stop="58621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55606" g_stop="55723" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55930" i_length="207">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55931" g_stop="55992" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="180" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55993" i_stop="56166" i_length="174">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56167" g_stop="56267" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="281" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56268" i_stop="56805" i_length="538">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56806" g_stop="56885" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="361" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58269" g_stop="58319" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="412" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58506" g_stop="58522" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="429" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E444376" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55606" e_stop="55723"/>
          <exon e_start="55931" e_stop="55992"/>
          <exon e_start="56167" e_stop="56267"/>
          <exon e_start="56806" e_stop="56885"/>
          <exon e_start="58269" e_stop="58319"/>
          <exon e_start="58506" e_stop="58522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAGGTAATCTTTTTAAAAGTTCACTCTTTTGAAACTGATAATTCTGGGTACTCACAGATAAAGATAGTCTAGTCCTTGATTTTATGCTTGCTTTATTGATTATAATGTGATTAGAAGAGCTCATTTTGTGTCCAAGGGTGCTTGAGATCTAGTAAAAGAGACTATTCTTGAGCTGCTAGAGTGACTTTCTTTATCATTATGTGATTGCAGGTTCTATCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTGGTTAGTTTTGAACACTGCATAATTCCCATGTTTTTTCACCTACCCCCTTCCCTGTATTTTATGTTTTCTCCATGTGACATGGAAGATGAAGCTATTTGGACCATTGGAACTCAGAGATGGAAATACCTATACCTTATCTATTCTTCTAATGTATCGTTTAAATGTGGTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAGGTAATCTTTATAATTGTCCATTGCGCTTCTTGAGGTCTCAAAATGTTGGAAAGAAACATTTCAGATAAACACGCCCTTGAAGTATGGAACTTAAGATTCACCAGCAGAGAAATCTGTTTTCCCCTTTCTCCTGCTTTCTTTTTGTTTTTAATTATAAAATTTTTCTGAAGATACTGCGTGGTGCTATTTACTTATAGTGGTGATATGATGGTCTCAAGCTAATGCTCATTCTCTGATTCATAATATAACTATACATGTGCGCTGATATGAGATAACTTTGACTATGTATATTAAAGCTTAGACTGTGATGATGAGGGTGACATGATTTTTGCTTTTTGACTATGATTTAGTAATTTTAATGCATCGCTCTCGTTTATCTATCCCATAAAGTTATCCTGGCTCCCTGCTTTTGTCATTGGAGGGGGTAGGGGTGAATGAGTAGAGCTCTAACATTATTGTTATCATCGTTGATAGCGTGATCCTTATTTTAATAAAAAATACTTTTTCACTTGAGTATTTTGTGTCATATCAAGGACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGTATGTTGTTATCCTGTCACCTTGGTAGAGATAGGAAACAACTCTCAGCTTAAAAATCTATAAATAGGATTAATATTTTTCTAAATCTTGTTCTCTTAAATGTAAATTATGTCAACACTGTCCTTAAAGTTCAAATTTCTTATTTCAATACATAATTTCCCCCCTTGTATATTTGTTACTCCTGCAAATATATTGTGTGTGTTAAATTGTTTGAAACTTTCTTGAGCCGGCAGTCTATCGGAAACAACCTAGTTACCGCACAAAGGTAGGGGTAAGGTCTGTGAATTCCCCACCCTCCCCAGACCACACTTGTAATATACTAGGTATGTTGTTTATTAATTATTTGCAAGATCCCATAAGCCTTGGGAACCGTTTGCAGATGGTCTGTTTGAGGCCAGAGTTAGTCCGTGTAAGGTGAGAAATCTGAATTAGCTCTTTTGGAGCTACAACTGAGCTGATTTTGCTTTTGATTCAGTGAAAACGTATAATGGAGGAGACCCGTCTTCATCTATTGAAGGCGAGAGTGTTTTGAGGATTAGTGTTGGTATTGAAGACCGTGTAGTACATTGGTGCACGTGAGGAACTTTTGTGGGGACAAAATCATGTTAATGCCTTAGAAGCTAATATGAAAAAGATGAGAAAAGAAGTTGAAAGTAGTGAGGTTGTAAGAAGATGGAGAATAAAGAATAGCTGCTCTCACAATGATTAGGCAAACCCATGTTTCACAGTTCAACTTCTTGGAACTGTGAATTTCATGAGTCTACTTTTTCAGAGGGTTATTACTATGAACCTGAAGACAAAAATAGATAGGCTGTTCTTCATTTTGACATTCCAAGACTATTGACACCTAAGTATGTGTATAGATCAATGACACTTGGTATCCGAACTTTAGGCCATCATTAAAAGAGATGCCACTGTTAATCTAAGTCTACCTTGAGATTAAATAACTAGAATTTCCTGGTGGTTAGGTTAATTTAGTCTGAACATGTTTACTATTCCCTGCCTACCCTGTTTCCAGTGCTTAATCGCTGAAGTCTTTCATAGAAGTAGAGTAGCAGAAAACAAGTGATGTTATCATTAAACATAGGGATATTTCTTTTGGGTGATCTAGTTTACAAAATAGCCAACAAATGTTTAGGTTTTGTATATCCAAGTATAATATGCATATACTTTACCATAAGATACATACCTATACATAATTAGTGTACAGGTTTTGTATATTTCAGCCTTATTGGTAAGTAAGTTTTGGATGAACTGTATATATTGGTAAATTCTCCATTAAAAATAGTTGTCACCTTGATAAGAGTCCTGAAACTGTGGGTTTCCATTCAATGGTATACTCGTTCCAAAAAAGCCAGTCAATGATAATACTTTTGTCTGCAGGCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTAAGTACTAAACCTGTTGAGTCTTTTTATCTATAATTTATTGTTCTATTCATGTTTTATTTTCTTTGTCTTGAGAAAAATGTTCTTGCTTCTTAATCAGAATGCATGATTTTGTGCATCCTTTCCAGTGATTTCTAGCCTTGATATGACTTCTCATTTTATTACTCTGGTATGATATTATTGCAGGTTGCTGACTACAATGT</genome_strand>
        <mrna_strand>TTCTGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAAAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAG...............................................................................................................................................................................................................GTTCTGTCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTG..............................................................................................................................................................................GCCTGTAGGAAATGACAGTAGTGAAAAAACAGATGGAATAGAAAATGAGTCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGGCCAACAGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTTATAGCAGATGCTACGACACTAACTCAN.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT..........................................................................................................................................................................................GTTGCTGACTACAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471573" ref_strand="+" ref_description="SGN-E471573 [cSTB-24-B15]">
      <seq>caaaagatgggtcttggggtggatccaatttgggtacccaatttcccacaccaaagctactgtgtaaaggacttgataagtttgtaattggacaggagagagctaaaaaggttctgtctgtcgccgtatataatcattacaagagaatatattatgactcttcacataagtggcctgcaggaaatgacagtagtgaaaaaacacatggaatagaaaatgagtctgtggagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55314" stop="56529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55614" g_stop="55723" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55930" i_length="207">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55931" g_stop="55992" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="172" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55993" i_stop="56166" i_length="174">
            <donor d_prob="0.176" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56167" g_stop="56229" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="235" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E471573" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55614" e_stop="55723"/>
          <exon e_start="55931" e_stop="55992"/>
          <exon e_start="56167" e_stop="56229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAGGTAATCTTTTTAAAAGTTCACTCTTTTGAAACTGATAATTCTGGGTACTCACAGATAAAGATAGTCTAGTCCTTGATTTTATGCTTGCTTTATTGATTATAATGTGATTAGAAGAGCTCATTTTGTGTCCAAGGGTGCTTGAGATCTAGTAAAAGAGACTATTCTTGAGCTGCTAGAGTGACTTTCTTTATCATTATGTGATTGCAGGTTCTATCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTGGTTAGTTTTGAACACTGCATAATTCCCATGTTTTTTCACCTACCCCCTTCCCTGTATTTTATGTTTTCTCCATGTGACATGGAAGATGAAGCTATTTGGACCATTGGAACTCAGAGATGGAAATACCTATACCTTATCTATTCTTCTAATGTATCGTTTAAATGTGGTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGA</genome_strand>
        <mrna_strand>CAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCTACTGTGTAAAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAG...............................................................................................................................................................................................................GTTCTGTCTGTCGCCGTATATAATCATTACAAGAGAATATATTATGACTCTTCACATAAGTG..............................................................................................................................................................................GCCTGCAGGAAATGACAGTAGTGAAAAAACACATGGAATAGAAAATGAGTCTGTGGAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561581" ref_strand="+" ref_description="SGN-E561581 [17003]">
      <seq>caaagatgggtcttggggtggatccaatttgggaacccaatttcccacaccaaagcaactgtgtaaaggacttgataagtttgtaattggacaggagagagctaaaaaggttctgtctgtcgccgtatataatcattacaagagaatatataatgactcttcacataagtggcctgcaggaaatgacggtagtgaaaaaacagatggaatagaaaatgagtctgtggagcttgagaagagtaacatccttttaatggggccaacaggttcagggaaaactttacttgccaagaccttagctcgattggtgaatgttccctttgtcatagcagatgctacgacactaactcaggcaggatatgttggggaagatgtggaatctattctatataagctcctcactgttgctgactacaatgtagcagctgctcagcaaggcatagtgtatattgatgaagtttgacaagatcacgaacaaaggcctgaaagcctcaacattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55316" stop="59004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55615" g_stop="55723" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55930" i_length="207">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55931" g_stop="55992" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="171" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55993" i_stop="56166" i_length="174">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56167" g_stop="56267" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="272" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56268" i_stop="56805" i_length="538">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56806" g_stop="56885" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="352" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58269" g_stop="58319" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="403" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58506" g_stop="58580" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="480" r_length="77" r_score="0.933"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58685" g_stop="58704" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="501" r_length="21" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E561581" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55615" e_stop="55723"/>
          <exon e_start="55931" e_stop="55992"/>
          <exon e_start="56167" e_stop="56267"/>
          <exon e_start="56806" e_stop="56885"/>
          <exon e_start="58269" e_stop="58319"/>
          <exon e_start="58506" e_stop="58580"/>
          <exon e_start="58685" e_stop="58704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAGGTAATCTTTTTAAAAGTTCACTCTTTTGAAACTGATAATTCTGGGTACTCACAGATAAAGATAGTCTAGTCCTTGATTTTATGCTTGCTTTATTGATTATAATGTGATTAGAAGAGCTCATTTTGTGTCCAAGGGTGCTTGAGATCTAGTAAAAGAGACTATTCTTGAGCTGCTAGAGTGACTTTCTTTATCATTATGTGATTGCAGGTTCTATCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTGGTTAGTTTTGAACACTGCATAATTCCCATGTTTTTTCACCTACCCCCTTCCCTGTATTTTATGTTTTCTCCATGTGACATGGAAGATGAAGCTATTTGGACCATTGGAACTCAGAGATGGAAATACCTATACCTTATCTATTCTTCTAATGTATCGTTTAAATGTGGTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAGGTAATCTTTATAATTGTCCATTGCGCTTCTTGAGGTCTCAAAATGTTGGAAAGAAACATTTCAGATAAACACGCCCTTGAAGTATGGAACTTAAGATTCACCAGCAGAGAAATCTGTTTTCCCCTTTCTCCTGCTTTCTTTTTGTTTTTAATTATAAAATTTTTCTGAAGATACTGCGTGGTGCTATTTACTTATAGTGGTGATATGATGGTCTCAAGCTAATGCTCATTCTCTGATTCATAATATAACTATACATGTGCGCTGATATGAGATAACTTTGACTATGTATATTAAAGCTTAGACTGTGATGATGAGGGTGACATGATTTTTGCTTTTTGACTATGATTTAGTAATTTTAATGCATCGCTCTCGTTTATCTATCCCATAAAGTTATCCTGGCTCCCTGCTTTTGTCATTGGAGGGGGTAGGGGTGAATGAGTAGAGCTCTAACATTATTGTTATCATCGTTGATAGCGTGATCCTTATTTTAATAAAAAATACTTTTTCACTTGAGTATTTTGTGTCATATCAAGGACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGTATGTTGTTATCCTGTCACCTTGGTAGAGATAGGAAACAACTCTCAGCTTAAAAATCTATAAATAGGATTAATATTTTTCTAAATCTTGTTCTCTTAAATGTAAATTATGTCAACACTGTCCTTAAAGTTCAAATTTCTTATTTCAATACATAATTTCCCCCCTTGTATATTTGTTACTCCTGCAAATATATTGTGTGTGTTAAATTGTTTGAAACTTTCTTGAGCCGGCAGTCTATCGGAAACAACCTAGTTACCGCACAAAGGTAGGGGTAAGGTCTGTGAATTCCCCACCCTCCCCAGACCACACTTGTAATATACTAGGTATGTTGTTTATTAATTATTTGCAAGATCCCATAAGCCTTGGGAACCGTTTGCAGATGGTCTGTTTGAGGCCAGAGTTAGTCCGTGTAAGGTGAGAAATCTGAATTAGCTCTTTTGGAGCTACAACTGAGCTGATTTTGCTTTTGATTCAGTGAAAACGTATAATGGAGGAGACCCGTCTTCATCTATTGAAGGCGAGAGTGTTTTGAGGATTAGTGTTGGTATTGAAGACCGTGTAGTACATTGGTGCACGTGAGGAACTTTTGTGGGGACAAAATCATGTTAATGCCTTAGAAGCTAATATGAAAAAGATGAGAAAAGAAGTTGAAAGTAGTGAGGTTGTAAGAAGATGGAGAATAAAGAATAGCTGCTCTCACAATGATTAGGCAAACCCATGTTTCACAGTTCAACTTCTTGGAACTGTGAATTTCATGAGTCTACTTTTTCAGAGGGTTATTACTATGAACCTGAAGACAAAAATAGATAGGCTGTTCTTCATTTTGACATTCCAAGACTATTGACACCTAAGTATGTGTATAGATCAATGACACTTGGTATCCGAACTTTAGGCCATCATTAAAAGAGATGCCACTGTTAATCTAAGTCTACCTTGAGATTAAATAACTAGAATTTCCTGGTGGTTAGGTTAATTTAGTCTGAACATGTTTACTATTCCCTGCCTACCCTGTTTCCAGTGCTTAATCGCTGAAGTCTTTCATAGAAGTAGAGTAGCAGAAAACAAGTGATGTTATCATTAAACATAGGGATATTTCTTTTGGGTGATCTAGTTTACAAAATAGCCAACAAATGTTTAGGTTTTGTATATCCAAGTATAATATGCATATACTTTACCATAAGATACATACCTATACATAATTAGTGTACAGGTTTTGTATATTTCAGCCTTATTGGTAAGTAAGTTTTGGATGAACTGTATATATTGGTAAATTCTCCATTAAAAATAGTTGTCACCTTGATAAGAGTCCTGAAACTGTGGGTTTCCATTCAATGGTATACTCGTTCCAAAAAAGCCAGTCAATGATAATACTTTTGTCTGCAGGCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTAAGTACTAAACCTGTTGAGTCTTTTTATCTATAATTTATTGTTCTATTCATGTTTTATTTTCTTTGTCTTGAGAAAAATGTTCTTGCTTCTTAATCAGAATGCATGATTTTGTGCATCCTTTCCAGTGATTTCTAGCCTTGATATGACTTCTCATTTTATTACTCTGGTATGATATTATTGCAGGTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAG-TTGACAAAATCACGAA-AAAGGTTGATATTGACTTATTGATTGTTATTTTCTTTTTCAGATTTAACTTCACTAGCGACTTCTCATGTGTCAGTTTAGCTGATTCCTCCTATACTGATATTTCCAGG-CTGAAAGCCTCAACATCAG</genome_strand>
        <mrna_strand>CAAAGATGGGTCTTGGGGTGGATCCAATTTGGGAACCCAATTTCCCACACCAAAGCAACTGTGTAAAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAG...............................................................................................................................................................................................................GTTCTGTCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTG..............................................................................................................................................................................GCCTGCAGGAAATGACGGTAGTGAAAAAACAGATGGAATAGAAAATGAGTCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGGCCAACAGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTCATAGCAGATGCTACGACACTAACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT..........................................................................................................................................................................................GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTTGACAAGATCACGAACAAAG........................................................................................................GCCTGAAAGCCTCAACATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389741" ref_strand="+" ref_description="SGN-E389741 [TUS-4-C14]">
      <seq>gtaccaaggcctgcaggaaatgacagtagtgaaaaaacagatggagtagaaaatgaatctgtggagcttgagaagagtaacatccttttaatgggaccaacaggttcaggacagggaaaactttacttgccaagaccttagctcgattggtgaatgttccctttgtaatagcagatgctacgacactaactcaggcaggatatgttggggaagatgtggaatctattctatataagctcctcactgttgctgactacaatgtagcagctgctcagcaaggcatagtgtatattgatgaagttgacaaaatcacgaaaaaggctgaaagcctcaacatcagtagagatgtctcaggagagggcgtccagcaggcattgctgaagatgcttgaaggaacaattgtcaatgtgccggagaagggagctcggaagcaccctagaggggataatattcagattgataccaaagatattctctttatatgtggtggagccttcattgacttggagaaaacaatctcagaaaggcgccaagattcttctataggatttggtgcaccagttcgcacaaacatgaggactggtggtgttacaagtgctgctgtgacgtcatctttattggagacagttgaaagtagtgatcttatatcatacggtctgatacctgagtttgtcggccgattccccattcttgttagtctgtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55859" stop="61440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56159" g_stop="56267" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56268" i_stop="56800" i_length="533">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56801" g_stop="56885" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="194" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58269" g_stop="58319" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="245" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58506" g_stop="58580" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="320" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58685" g_stop="58762" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59610" g_stop="59666" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="455" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60156" g_stop="60226" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="526" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60313" g_stop="60412" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="626" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61062" g_stop="61140" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="705" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E389741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56159" e_stop="56267"/>
          <exon e_start="56801" e_stop="56885"/>
          <exon e_start="58269" e_stop="58319"/>
          <exon e_start="58506" e_stop="58580"/>
          <exon e_start="58685" e_stop="58762"/>
          <exon e_start="59610" e_stop="59666"/>
          <exon e_start="60156" e_stop="60226"/>
          <exon e_start="60313" e_stop="60412"/>
          <exon e_start="61062" e_stop="61140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAGGTAATCTTTATAATTGTCCATTGCGCTTCTTGAGGTCTCAAAATGTTGGAAAGAAACATTTCAGATAAACACGCCCTTGAAGTATGGAACTTAAGATTCACCAGCAGAGAAATCTGTTTTCCCCTTTCTCCTGCTTTCTTTTTGTTTTTAATTATAAAATTTTTCTGAAGATACTGCGTGGTGCTATTTACTTATAGTGGTGATATGATGGTCTCAAGCTAATGCTCATTCTCTGATTCATAATATAACTATACATGTGCGCTGATATGAGATAACTTTGACTATGTATATTAAAGCTTAGACTGTGATGATGAGGGTGACATGATTTTTGCTTTTTGACTATGATTTAGTAATTTTAATGCATCGCTCTCGTTTATCTATCCCATAAAGTTATCCTGGCTCCCTGCTTTTGTCATTGGAGGGGGTAGGGGTGAATGAGTAGAGCTCTAACATTATTGTTATCATCGTTGATAGCGTGATCCTTATTTTAATAAAAAATACTTTTTCACTTGAGTATTTTGTGTCATATCAAGGACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGTATGTTGTTATCCTGTCACCTTGGTAGAGATAGGAAACAACTCTCAGCTTAAAAATCTATAAATAGGATTAATATTTTTCTAAATCTTGTTCTCTTAAATGTAAATTATGTCAACACTGTCCTTAAAGTTCAAATTTCTTATTTCAATACATAATTTCCCCCCTTGTATATTTGTTACTCCTGCAAATATATTGTGTGTGTTAAATTGTTTGAAACTTTCTTGAGCCGGCAGTCTATCGGAAACAACCTAGTTACCGCACAAAGGTAGGGGTAAGGTCTGTGAATTCCCCACCCTCCCCAGACCACACTTGTAATATACTAGGTATGTTGTTTATTAATTATTTGCAAGATCCCATAAGCCTTGGGAACCGTTTGCAGATGGTCTGTTTGAGGCCAGAGTTAGTCCGTGTAAGGTGAGAAATCTGAATTAGCTCTTTTGGAGCTACAACTGAGCTGATTTTGCTTTTGATTCAGTGAAAACGTATAATGGAGGAGACCCGTCTTCATCTATTGAAGGCGAGAGTGTTTTGAGGATTAGTGTTGGTATTGAAGACCGTGTAGTACATTGGTGCACGTGAGGAACTTTTGTGGGGACAAAATCATGTTAATGCCTTAGAAGCTAATATGAAAAAGATGAGAAAAGAAGTTGAAAGTAGTGAGGTTGTAAGAAGATGGAGAATAAAGAATAGCTGCTCTCACAATGATTAGGCAAACCCATGTTTCACAGTTCAACTTCTTGGAACTGTGAATTTCATGAGTCTACTTTTTCAGAGGGTTATTACTATGAACCTGAAGACAAAAATAGATAGGCTGTTCTTCATTTTGACATTCCAAGACTATTGACACCTAAGTATGTGTATAGATCAATGACACTTGGTATCCGAACTTTAGGCCATCATTAAAAGAGATGCCACTGTTAATCTAAGTCTACCTTGAGATTAAATAACTAGAATTTCCTGGTGGTTAGGTTAATTTAGTCTGAACATGTTTACTATTCCCTGCCTACCCTGTTTCCAGTGCTTAATCGCTGAAGTCTTTCATAGAAGTAGAGTAGCAGAAAACAAGTGATGTTATCATTAAACATAGGGATATTTCTTTTGGGTGATCTAGTTTACAAAATAGCCAACAAATGTTTAGGTTTTGTATATCCAAGTATAATATGCATATACTTTACCATAAGATACATACCTATACATAATTAGTGTACAGGTTTTGTATATTTCAGCCTTATTGGTAAGTAAGTTTTGGATGAACTGTATATATTGGTAAATTCTCCATTAAAAATAGTTGTCACCTTGATAAGAGTCCTGAAACTGTGGGTTTCCATTCAATGGTATACTCGTTCCAAAAAAGCCAGTCAATGATAATACTTTTGTCTGCAGGCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTAAGTACTAAACCTGTTGAGTCTTTTTATCTATAATTTATTGTTCTATTCATGTTTTATTTTCTTTGTCTTGAGAAAAATGTTCTTGCTTCTTAATCAGAATGCATGATTTTGTGCATCCTTTCCAGTGATTTCTAGCCTTGATATGACTTCTCATTTTATTACTCTGGTATGATATTATTGCAGGTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAGGTTGATATTGACTTATTGATTGTTATTTTCTTTTTCAGATTTAACTTCACTAGCGACTTCTCATGTGTCAGTTTAGCTGATTCCTCCTATACTGATATTTCCAGGCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACAGTAAGTGTATAGCTTAGTTTTTTGCATGTTAATGGTGAATTGATCGCCTCAATCTTTACCACGTGTGGATATTGTTTAATGTTGCAAATGTAGAAGCAACTTTGGCTGCTGATGGCTCATCAACATTAGATCTAGACAAATAGCTTTTGTATATGATGATAACCAGATTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTGAAAGTTGGAGGCTTAGTGTCGGACACTTTATCTAACCAAACTATATAAGCTGATTTTTTTTAGATCCCATGGACTGGCTGAATGTAGCTCATCTTCTATGATATAACTTTTATCTTGCTGGTGTCCTTGGTACTTGTTTCATGTCTTTTTCAGTTTCCTGTAACACAATCTGCATGTGCTAACCGTGAGTCCTTTTGCCCTTTCTGCTAGTTTATTCCAGAAGTAGTAGTGGTGGTTTTCTCTTGTAATATTCTTTCCTCTTTCTTCTTTATTTTGAAGATATTTATTGGAATTACTTGAATCTTTCGATAAAGAAGGAATGGTTTCTTCTTCTTTTTTCTCCTTTCGATTTTCACATTTCTATTATTATATATCTATCCTTATTCAAATGACCTCCAGATGTACAAAACAATTGTTGTGATCAAAGAATGGTCTGACTATTTTAACGACTAGATTTGCGATTGCGGATCATGGTTTGATTTATAGTTCAGTCGTAATGATTGGAATAATTAATGTTTACATCATTTGTTTTTATAATTAGGTTTCTGTTACTTATCCCAAAATTAATAATAACAATCAGCTTTCTGTTGCAGATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAGGTAGGTTATGAAAACTTCTCATTTTGGGATTAAGATATTTATTCGCAATCAAGAAGAATTTGGAGTGTCCTGGGATTAAAAATGTTTATTTTTGGCTTTGTACTGTTAATTGTTTATATGGATGTCTTCAAATGGATAAAGATTTGTATCCAATAAGATAATTTGATGTGCTCATGAGCTTGAGTTTAGGATGAATTAATTTACCTTCGTAATTATTTACTGATTTTATAACTGAGGTATAGTGACTGTTTCATTTGGCCTTCTGTTAGTGGGTGTATGATAGCTGTTCTTGAAGAACTAGTAAAGTGATCTTTGACTAGTTCTTTTGTCTAAGATTATCTTCATAGTTATTTGTTAACTCTTTGCGCTTTTATATCGTTGGATGACCCTGATTCTTTTGGCATGCTAGGTTTACAGTTGATTTGATGTTTCAGATATATTTCTTTGAGCAAAAAGTTTCTTATATCATAATTGTTTATGTCATTACAGATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAGGTCTTGCTACTTCCACGTCGTAGTTTTATCTCTTTCCTTTAGTCTGATATTCACCTTATTCCTGATATACTTGTTCTTGTTTTCAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTAAGTTTCTTCTGAACCCTTGCAGCTTAGCGAACCTTCCAGACCACATATACTAATAGTTTTTTAGCTTGATTGTGGTTGTATTTTGCATGATCATATATGTAGCCTCCATGTTAGCTGCATAGAGAAACTGATGTCTATGTGTTGCTGTGCTTATTGGTCAATGAAAGTAGTTACATGTGCATCAGATGAAGTCAAATATATGCTACAAGATGAACTGAGATATTAATTTACTGATGTGAAACTTGTTATTACTGTTTGCTATCATTATTCTTCTGCATCTCCAACACGTTTTTCCTAGAATTCGGGTTTTTCCCTGCATTTGTAGTTTGAGCAGATGCAGAGTTGTATTTGCTTTGACCAATTAAAAAAGAGTTGTATGTACTGTTTCATTTACTTCCTCTGGCTTGTTTTATGTCAGTTAAATAAAGTGATATTTGACTGAGATCTTTAAATTTATTATTTTTCCACTTTAATATGGAAAAAGTTCAGGCCCATATAGTACTTCATGTAATTTCTAAATATTTTAGTTTTATTTTTTGAACTATGGATAATTCCTGTGACCAATATAACTCTTTATTCTTACTCTTTTTTATGGCATGTTTTGAAGCATTTACTAATCATTGTACATAATACTCCTGTTATGCAGGTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAG</genome_strand>
        <mrna_strand>GTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT..........................................................................................................................................................................................GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG........................................................................................................GCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG......................................................................................GCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231696" ref_strand="+" ref_description="SGN-E231696 [cLED-4-B15]">
      <seq>taccaaggcctgcaggaaatgacagtagtgaaaaaacagatggagtagaaaatgaatctgtggagcttgagaagagtaacatccttttaatgggaccaacaggttcaggacagggaaaactttacttgccaagaccttagctcgattggtgaatgttccctttgtaatagcagatgctacgacactaactcaggcaggatatgttggggaagatgtggaatctattctatataagctcctcactgttgctgactacaatgtagcagctgctcagcaaggcatagtgtatattgatgaagttgacaaaatcacgaaaaaggctgaaagcctcaacatcagtagagatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55860" stop="59015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56160" g_stop="56267" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56268" i_stop="56800" i_length="533">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56801" g_stop="56885" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="193" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58269" g_stop="58319" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="244" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58506" g_stop="58580" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="319" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58685" g_stop="58715" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="350" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E231696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56160" e_stop="56267"/>
          <exon e_start="56801" e_stop="56885"/>
          <exon e_start="58269" e_stop="58319"/>
          <exon e_start="58506" e_stop="58580"/>
          <exon e_start="58685" e_stop="58715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAGGTAATCTTTATAATTGTCCATTGCGCTTCTTGAGGTCTCAAAATGTTGGAAAGAAACATTTCAGATAAACACGCCCTTGAAGTATGGAACTTAAGATTCACCAGCAGAGAAATCTGTTTTCCCCTTTCTCCTGCTTTCTTTTTGTTTTTAATTATAAAATTTTTCTGAAGATACTGCGTGGTGCTATTTACTTATAGTGGTGATATGATGGTCTCAAGCTAATGCTCATTCTCTGATTCATAATATAACTATACATGTGCGCTGATATGAGATAACTTTGACTATGTATATTAAAGCTTAGACTGTGATGATGAGGGTGACATGATTTTTGCTTTTTGACTATGATTTAGTAATTTTAATGCATCGCTCTCGTTTATCTATCCCATAAAGTTATCCTGGCTCCCTGCTTTTGTCATTGGAGGGGGTAGGGGTGAATGAGTAGAGCTCTAACATTATTGTTATCATCGTTGATAGCGTGATCCTTATTTTAATAAAAAATACTTTTTCACTTGAGTATTTTGTGTCATATCAAGGACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGTATGTTGTTATCCTGTCACCTTGGTAGAGATAGGAAACAACTCTCAGCTTAAAAATCTATAAATAGGATTAATATTTTTCTAAATCTTGTTCTCTTAAATGTAAATTATGTCAACACTGTCCTTAAAGTTCAAATTTCTTATTTCAATACATAATTTCCCCCCTTGTATATTTGTTACTCCTGCAAATATATTGTGTGTGTTAAATTGTTTGAAACTTTCTTGAGCCGGCAGTCTATCGGAAACAACCTAGTTACCGCACAAAGGTAGGGGTAAGGTCTGTGAATTCCCCACCCTCCCCAGACCACACTTGTAATATACTAGGTATGTTGTTTATTAATTATTTGCAAGATCCCATAAGCCTTGGGAACCGTTTGCAGATGGTCTGTTTGAGGCCAGAGTTAGTCCGTGTAAGGTGAGAAATCTGAATTAGCTCTTTTGGAGCTACAACTGAGCTGATTTTGCTTTTGATTCAGTGAAAACGTATAATGGAGGAGACCCGTCTTCATCTATTGAAGGCGAGAGTGTTTTGAGGATTAGTGTTGGTATTGAAGACCGTGTAGTACATTGGTGCACGTGAGGAACTTTTGTGGGGACAAAATCATGTTAATGCCTTAGAAGCTAATATGAAAAAGATGAGAAAAGAAGTTGAAAGTAGTGAGGTTGTAAGAAGATGGAGAATAAAGAATAGCTGCTCTCACAATGATTAGGCAAACCCATGTTTCACAGTTCAACTTCTTGGAACTGTGAATTTCATGAGTCTACTTTTTCAGAGGGTTATTACTATGAACCTGAAGACAAAAATAGATAGGCTGTTCTTCATTTTGACATTCCAAGACTATTGACACCTAAGTATGTGTATAGATCAATGACACTTGGTATCCGAACTTTAGGCCATCATTAAAAGAGATGCCACTGTTAATCTAAGTCTACCTTGAGATTAAATAACTAGAATTTCCTGGTGGTTAGGTTAATTTAGTCTGAACATGTTTACTATTCCCTGCCTACCCTGTTTCCAGTGCTTAATCGCTGAAGTCTTTCATAGAAGTAGAGTAGCAGAAAACAAGTGATGTTATCATTAAACATAGGGATATTTCTTTTGGGTGATCTAGTTTACAAAATAGCCAACAAATGTTTAGGTTTTGTATATCCAAGTATAATATGCATATACTTTACCATAAGATACATACCTATACATAATTAGTGTACAGGTTTTGTATATTTCAGCCTTATTGGTAAGTAAGTTTTGGATGAACTGTATATATTGGTAAATTCTCCATTAAAAATAGTTGTCACCTTGATAAGAGTCCTGAAACTGTGGGTTTCCATTCAATGGTATACTCGTTCCAAAAAAGCCAGTCAATGATAATACTTTTGTCTGCAGGCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTAAGTACTAAACCTGTTGAGTCTTTTTATCTATAATTTATTGTTCTATTCATGTTTTATTTTCTTTGTCTTGAGAAAAATGTTCTTGCTTCTTAATCAGAATGCATGATTTTGTGCATCCTTTCCAGTGATTTCTAGCCTTGATATGACTTCTCATTTTATTACTCTGGTATGATATTATTGCAGGTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAGGTTGATATTGACTTATTGATTGTTATTTTCTTTTTCAGATTTAACTTCACTAGCGACTTCTCATGTGTCAGTTTAGCTGATTCCTCCTATACTGATATTTCCAGGCTGAAAGCCTCAACATCAGTAGAGATGTCT</genome_strand>
        <mrna_strand>TACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT..........................................................................................................................................................................................GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG........................................................................................................GCTGAAAGCCTCAACATCAGTAGAGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709524" ref_strand="+" ref_description="SGN-E709524 [FA52BC02]">
      <seq>cgctttgtaatagcagatgctacgacactaactcaggcaggatatgttggggaagatgtggaatctattctatataagctcctcactgttgctgactacaatgtagcagctgctcagcaaggcatagtgtatattgatgaagttgacaaaatcacgaaaaaggctgaaagcctcaacatcagtagagatgtctcaggagagggcgtccagcaggcattgctgaagatgcttgaaggaacaattgtcaatgtgccggagaagggagctcggaagcaccctagaggggataatattcagattgataccaaagatattctctttatatgtggtggagccttcattgacttggagaaaacaatctcagaaaggcgccaagattcttctataggatttggcgcaccagttcgcacatgaggactggtggtgttacaagtgctgctgtgacgtcatctttattggagacagttgaaagtagtgatcttatatcatatggtctgatacctgagtttgtcggccgattccccatccttgttagtctgtcagctttaactgaggatcaacttgtgcaggttctaacggagccaaaaaatgcgctagggaagcagtacaaaaagatgttccagatgaacggggtaaagttgcattttgttgaagctgcactaagattggtagctaggaaagcaatatctaaaaatactggtgctcgtggattgcgatcccatattggagaatatattgatggatgctatgtatgaaattcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56552" stop="62036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56850" g_stop="56885" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58269" g_stop="58319" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="87" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58506" g_stop="58580" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="162" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58685" g_stop="58762" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="240" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59610" g_stop="59666" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="297" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60156" g_stop="60226" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="368" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60313" g_stop="60412" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="464" r_length="96" r_score="0.950"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61062" g_stop="61166" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="569" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61386" g_stop="61448" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="632" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166">
            <donor d_prob="0.254" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="61615" g_stop="61737" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="756" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E709524" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56850" e_stop="56885"/>
          <exon e_start="58269" e_stop="58319"/>
          <exon e_start="58506" e_stop="58580"/>
          <exon e_start="58685" e_stop="58762"/>
          <exon e_start="59610" e_stop="59666"/>
          <exon e_start="60156" e_stop="60226"/>
          <exon e_start="60313" e_stop="60412"/>
          <exon e_start="61062" e_stop="61166"/>
          <exon e_start="61386" e_stop="61448"/>
          <exon e_start="61615" e_stop="61737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGTATGTTGTTATCCTGTCACCTTGGTAGAGATAGGAAACAACTCTCAGCTTAAAAATCTATAAATAGGATTAATATTTTTCTAAATCTTGTTCTCTTAAATGTAAATTATGTCAACACTGTCCTTAAAGTTCAAATTTCTTATTTCAATACATAATTTCCCCCCTTGTATATTTGTTACTCCTGCAAATATATTGTGTGTGTTAAATTGTTTGAAACTTTCTTGAGCCGGCAGTCTATCGGAAACAACCTAGTTACCGCACAAAGGTAGGGGTAAGGTCTGTGAATTCCCCACCCTCCCCAGACCACACTTGTAATATACTAGGTATGTTGTTTATTAATTATTTGCAAGATCCCATAAGCCTTGGGAACCGTTTGCAGATGGTCTGTTTGAGGCCAGAGTTAGTCCGTGTAAGGTGAGAAATCTGAATTAGCTCTTTTGGAGCTACAACTGAGCTGATTTTGCTTTTGATTCAGTGAAAACGTATAATGGAGGAGACCCGTCTTCATCTATTGAAGGCGAGAGTGTTTTGAGGATTAGTGTTGGTATTGAAGACCGTGTAGTACATTGGTGCACGTGAGGAACTTTTGTGGGGACAAAATCATGTTAATGCCTTAGAAGCTAATATGAAAAAGATGAGAAAAGAAGTTGAAAGTAGTGAGGTTGTAAGAAGATGGAGAATAAAGAATAGCTGCTCTCACAATGATTAGGCAAACCCATGTTTCACAGTTCAACTTCTTGGAACTGTGAATTTCATGAGTCTACTTTTTCAGAGGGTTATTACTATGAACCTGAAGACAAAAATAGATAGGCTGTTCTTCATTTTGACATTCCAAGACTATTGACACCTAAGTATGTGTATAGATCAATGACACTTGGTATCCGAACTTTAGGCCATCATTAAAAGAGATGCCACTGTTAATCTAAGTCTACCTTGAGATTAAATAACTAGAATTTCCTGGTGGTTAGGTTAATTTAGTCTGAACATGTTTACTATTCCCTGCCTACCCTGTTTCCAGTGCTTAATCGCTGAAGTCTTTCATAGAAGTAGAGTAGCAGAAAACAAGTGATGTTATCATTAAACATAGGGATATTTCTTTTGGGTGATCTAGTTTACAAAATAGCCAACAAATGTTTAGGTTTTGTATATCCAAGTATAATATGCATATACTTTACCATAAGATACATACCTATACATAATTAGTGTACAGGTTTTGTATATTTCAGCCTTATTGGTAAGTAAGTTTTGGATGAACTGTATATATTGGTAAATTCTCCATTAAAAATAGTTGTCACCTTGATAAGAGTCCTGAAACTGTGGGTTTCCATTCAATGGTATACTCGTTCCAAAAAAGCCAGTCAATGATAATACTTTTGTCTGCAGGCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTAAGTACTAAACCTGTTGAGTCTTTTTATCTATAATTTATTGTTCTATTCATGTTTTATTTTCTTTGTCTTGAGAAAAATGTTCTTGCTTCTTAATCAGAATGCATGATTTTGTGCATCCTTTCCAGTGATTTCTAGCCTTGATATGACTTCTCATTTTATTACTCTGGTATGATATTATTGCAGGTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAGGTTGATATTGACTTATTGATTGTTATTTTCTTTTTCAGATTTAACTTCACTAGCGACTTCTCATGTGTCAGTTTAGCTGATTCCTCCTATACTGATATTTCCAGGCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACAGTAAGTGTATAGCTTAGTTTTTTGCATGTTAATGGTGAATTGATCGCCTCAATCTTTACCACGTGTGGATATTGTTTAATGTTGCAAATGTAGAAGCAACTTTGGCTGCTGATGGCTCATCAACATTAGATCTAGACAAATAGCTTTTGTATATGATGATAACCAGATTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTGAAAGTTGGAGGCTTAGTGTCGGACACTTTATCTAACCAAACTATATAAGCTGATTTTTTTTAGATCCCATGGACTGGCTGAATGTAGCTCATCTTCTATGATATAACTTTTATCTTGCTGGTGTCCTTGGTACTTGTTTCATGTCTTTTTCAGTTTCCTGTAACACAATCTGCATGTGCTAACCGTGAGTCCTTTTGCCCTTTCTGCTAGTTTATTCCAGAAGTAGTAGTGGTGGTTTTCTCTTGTAATATTCTTTCCTCTTTCTTCTTTATTTTGAAGATATTTATTGGAATTACTTGAATCTTTCGATAAAGAAGGAATGGTTTCTTCTTCTTTTTTCTCCTTTCGATTTTCACATTTCTATTATTATATATCTATCCTTATTCAAATGACCTCCAGATGTACAAAACAATTGTTGTGATCAAAGAATGGTCTGACTATTTTAACGACTAGATTTGCGATTGCGGATCATGGTTTGATTTATAGTTCAGTCGTAATGATTGGAATAATTAATGTTTACATCATTTGTTTTTATAATTAGGTTTCTGTTACTTATCCCAAAATTAATAATAACAATCAGCTTTCTGTTGCAGATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAGGTAGGTTATGAAAACTTCTCATTTTGGGATTAAGATATTTATTCGCAATCAAGAAGAATTTGGAGTGTCCTGGGATTAAAAATGTTTATTTTTGGCTTTGTACTGTTAATTGTTTATATGGATGTCTTCAAATGGATAAAGATTTGTATCCAATAAGATAATTTGATGTGCTCATGAGCTTGAGTTTAGGATGAATTAATTTACCTTCGTAATTATTTACTGATTTTATAACTGAGGTATAGTGACTGTTTCATTTGGCCTTCTGTTAGTGGGTGTATGATAGCTGTTCTTGAAGAACTAGTAAAGTGATCTTTGACTAGTTCTTTTGTCTAAGATTATCTTCATAGTTATTTGTTAACTCTTTGCGCTTTTATATCGTTGGATGACCCTGATTCTTTTGGCATGCTAGGTTTACAGTTGATTTGATGTTTCAGATATATTTCTTTGAGCAAAAAGTTTCTTATATCATAATTGTTTATGTCATTACAGATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAGGTCTTGCTACTTCCACGTCGTAGTTTTATCTCTTTCCTTTAGTCTGATATTCACCTTATTCCTGATATACTTGTTCTTGTTTTCAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTAAGTTTCTTCTGAACCCTTGCAGCTTAGCGAACCTTCCAGACCACATATACTAATAGTTTTTTAGCTTGATTGTGGTTGTATTTTGCATGATCATATATGTAGCCTCCATGTTAGCTGCATAGAGAAACTGATGTCTATGTGTTGCTGTGCTTATTGGTCAATGAAAGTAGTTACATGTGCATCAGATGAAGTCAAATATATGCTACAAGATGAACTGAGATATTAATTTACTGATGTGAAACTTGTTATTACTGTTTGCTATCATTATTCTTCTGCATCTCCAACACGTTTTTCCTAGAATTCGGGTTTTTCCCTGCATTTGTAGTTTGAGCAGATGCAGAGTTGTATTTGCTTTGACCAATTAAAAAAGAGTTGTATGTACTGTTTCATTTACTTCCTCTGGCTTGTTTTATGTCAGTTAAATAAAGTGATATTTGACTGAGATCTTTAAATTTATTATTTTTCCACTTTAATATGGAAAAAGTTCAGGCCCATATAGTACTTCATGTAATTTCTAAATATTTTAGTTTTATTTTTTGAACTATGGATAATTCCTGTGACCAATATAACTCTTTATTCTTACTCTTTTTTATGGCATGTTTTGAAGCATTTACTAATCATTGTACATAATACTCCTGTTATGCAGGTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATACTTGGAGACTTCTTTCTCAGGTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGAT-CCATATTGGAGAATATATTGATGGATGCTATGTATGAG</genome_strand>
        <mrna_strand>CGCTTTGTAATAGCAGATGCTACGACACTAACTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT..........................................................................................................................................................................................GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG........................................................................................................GCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG......................................................................................GCGCCAAGATTCTTCTATAGGATTTGGCGCACCAGTTCG--C--ACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTAGTGATCTTATATCATATGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATCCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG...........................................................................................................................................................................................................................GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG......................................................................................................................................................................GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCCATATTGGAGAATATATTGATGGATGCTATGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697933" ref_strand="+" ref_description="SGN-E697933 [FA04DA05]">
      <seq>ggtaagatgtggaatctattctatataagctcctcactgttgctgactacaatgtagcagctgctcagcaaggcatagtgtatattgatgaagttgacaaaatcacgaaaaaggctgaaagcctcaacatcagtagagatgtctcaggagagggcgtccagcaggcattgctgaagatgcttgaaggaacaattgtcaatgtgccggagaagggagctcggaagcaccctagaggggataatattcagattgataccaaagatattctctttatatgtggtggagccttcattgacttggagaaaacaatctcagaaaggcgccaagattcttctataggatttggcgcaccagttcgcacaaacatgaggactggtggtgttacaagtgctgctgtgacgtcatctttattggagacagttgaaagtagtgatcttatatcatatggtctgatacctgagtttgtcggccgattccccatccttgttagtctgtcagctttaactgaggatcaacttgtgcaggttctaacggagccaaaaaatgcgctagggaagcagtacaaaaagatgttccagatgaacggggtaaagttgcattttgttgaagctgcactaagattggtagctaggaaagcaatatctaaaaatactggtgctcgtggattgcgatccatattggagaatatattgatggatgctatgtatgagattcctgatgtcagaacaggcgatgatgtaatagatgccgttgtagttgatgaggagtctgtaggaactgnagggcgaagatgcgggggtaaaatcctttatggcaaaggtgcatttgaccgacacttcccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="57983" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58282" g_stop="58319" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58506" g_stop="58580" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="113" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58685" g_stop="58762" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="191" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59610" g_stop="59666" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="248" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60156" g_stop="60226" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="319" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60313" g_stop="60412" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="419" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61062" g_stop="61166" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="524" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61386" g_stop="61448" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="587" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166">
            <donor d_prob="0.254" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61615" g_stop="61737" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="710" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62798" g_stop="62930" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="843" r_length="133" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E697933" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58282" e_stop="58319"/>
          <exon e_start="58506" e_stop="58580"/>
          <exon e_start="58685" e_stop="58762"/>
          <exon e_start="59610" e_stop="59666"/>
          <exon e_start="60156" e_stop="60226"/>
          <exon e_start="60313" e_stop="60412"/>
          <exon e_start="61062" e_stop="61166"/>
          <exon e_start="61386" e_stop="61448"/>
          <exon e_start="61615" e_stop="61737"/>
          <exon e_start="62798" e_stop="62930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTAAGTACTAAACCTGTTGAGTCTTTTTATCTATAATTTATTGTTCTATTCATGTTTTATTTTCTTTGTCTTGAGAAAAATGTTCTTGCTTCTTAATCAGAATGCATGATTTTGTGCATCCTTTCCAGTGATTTCTAGCCTTGATATGACTTCTCATTTTATTACTCTGGTATGATATTATTGCAGGTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAGGTTGATATTGACTTATTGATTGTTATTTTCTTTTTCAGATTTAACTTCACTAGCGACTTCTCATGTGTCAGTTTAGCTGATTCCTCCTATACTGATATTTCCAGGCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACAGTAAGTGTATAGCTTAGTTTTTTGCATGTTAATGGTGAATTGATCGCCTCAATCTTTACCACGTGTGGATATTGTTTAATGTTGCAAATGTAGAAGCAACTTTGGCTGCTGATGGCTCATCAACATTAGATCTAGACAAATAGCTTTTGTATATGATGATAACCAGATTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTTAAAATAACCAGGCTGTTATGGAAGGATCACTTGAAAGTTGGAGGCTTAGTGTCGGACACTTTATCTAACCAAACTATATAAGCTGATTTTTTTTAGATCCCATGGACTGGCTGAATGTAGCTCATCTTCTATGATATAACTTTTATCTTGCTGGTGTCCTTGGTACTTGTTTCATGTCTTTTTCAGTTTCCTGTAACACAATCTGCATGTGCTAACCGTGAGTCCTTTTGCCCTTTCTGCTAGTTTATTCCAGAAGTAGTAGTGGTGGTTTTCTCTTGTAATATTCTTTCCTCTTTCTTCTTTATTTTGAAGATATTTATTGGAATTACTTGAATCTTTCGATAAAGAAGGAATGGTTTCTTCTTCTTTTTTCTCCTTTCGATTTTCACATTTCTATTATTATATATCTATCCTTATTCAAATGACCTCCAGATGTACAAAACAATTGTTGTGATCAAAGAATGGTCTGACTATTTTAACGACTAGATTTGCGATTGCGGATCATGGTTTGATTTATAGTTCAGTCGTAATGATTGGAATAATTAATGTTTACATCATTTGTTTTTATAATTAGGTTTCTGTTACTTATCCCAAAATTAATAATAACAATCAGCTTTCTGTTGCAGATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAGGTAGGTTATGAAAACTTCTCATTTTGGGATTAAGATATTTATTCGCAATCAAGAAGAATTTGGAGTGTCCTGGGATTAAAAATGTTTATTTTTGGCTTTGTACTGTTAATTGTTTATATGGATGTCTTCAAATGGATAAAGATTTGTATCCAATAAGATAATTTGATGTGCTCATGAGCTTGAGTTTAGGATGAATTAATTTACCTTCGTAATTATTTACTGATTTTATAACTGAGGTATAGTGACTGTTTCATTTGGCCTTCTGTTAGTGGGTGTATGATAGCTGTTCTTGAAGAACTAGTAAAGTGATCTTTGACTAGTTCTTTTGTCTAAGATTATCTTCATAGTTATTTGTTAACTCTTTGCGCTTTTATATCGTTGGATGACCCTGATTCTTTTGGCATGCTAGGTTTACAGTTGATTTGATGTTTCAGATATATTTCTTTGAGCAAAAAGTTTCTTATATCATAATTGTTTATGTCATTACAGATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAGGTCTTGCTACTTCCACGTCGTAGTTTTATCTCTTTCCTTTAGTCTGATATTCACCTTATTCCTGATATACTTGTTCTTGTTTTCAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTAAGTTTCTTCTGAACCCTTGCAGCTTAGCGAACCTTCCAGACCACATATACTAATAGTTTTTTAGCTTGATTGTGGTTGTATTTTGCATGATCATATATGTAGCCTCCATGTTAGCTGCATAGAGAAACTGATGTCTATGTGTTGCTGTGCTTATTGGTCAATGAAAGTAGTTACATGTGCATCAGATGAAGTCAAATATATGCTACAAGATGAACTGAGATATTAATTTACTGATGTGAAACTTGTTATTACTGTTTGCTATCATTATTCTTCTGCATCTCCAACACGTTTTTCCTAGAATTCGGGTTTTTCCCTGCATTTGTAGTTTGAGCAGATGCAGAGTTGTATTTGCTTTGACCAATTAAAAAAGAGTTGTATGTACTGTTTCATTTACTTCCTCTGGCTTGTTTTATGTCAGTTAAATAAAGTGATATTTGACTGAGATCTTTAAATTTATTATTTTTCCACTTTAATATGGAAAAAGTTCAGGCCCATATAGTACTTCATGTAATTTCTAAATATTTTAGTTTTATTTTTTGAACTATGGATAATTCCTGTGACCAATATAACTCTTTATTCTTACTCTTTTTTATGGCATGTTTTGAAGCATTTACTAATCATTGTACATAATACTCCTGTTATGCAGGTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATACTTGGAGACTTCTTTCTCAGGTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAGGTATGTAGTATGCCTTTTTTTCCTCTTCTTTTCCTCTGTGGACCTACAGCGTCTAGTGAGGACTGTTCAGAATATACGTTCTGTAGTTGTTATGCTAACCTGGAAATGAACTAGTTAATTATGTGAAGCAAACTGCTTGACATTATGAAATTTAATTACACATTTGCTTAGTGTACTTCTCTTCCAAGTTGCGCGGACTCTTCACTTTCTGTGCCGCTACATAGGGTGTAGGATCCGTACCCGATGTGGTCAACCAATTTTATGTTACCCAAAGTTGATGGTGAAATTCGGTACAGATACAATGATTTCTGTAATCAAAGCACAAGCTAAGGTAAAATTGAAGAAAATGGAATACTCTATGTTTACAAAATTTCTCTGTCAGTCATTTTCCTTGTATCACCTTATGGGATTCTCCTCTTGATCTATATTTTGTTATTTTTTCTTCATAATACCTTGTAAGTTCCCACAATATGTCTCATAATTTATACATATAACTCGACTTTTAGATTTTGAATTATTATTAGCCAAATCTCTACACTCATATTCATACCCCCGAATCTTAAAATTTAGATCATGAAGGATTTGACCTCTAGATCCACACTTGTATCAGACACTCACACCTGAGTCCGAGCAACTTAGCTTTTCTTTGGTTGTGGATTATATTGCTGAACATAATGTTCAAAATAAAATTGATCAGACCATGGTGCTTATTTCAAATTCTGAACATCTATGATCGTGCTTAGAACATCCAGGTTGAGTTCTCTGTATGTTTATATCATTAAATATGTACCGAGTTAATGACAAATACTTGTTGTTTTTCACCAAGTATACTATGAAAGCGTTAGCTGATAATTCTTTTTTAACTAATAAACAGAAAACAACCAATCAAAATTTGGGAGGGGATCATCTAAACAAAACATAAAAATAAATAGCCTGGAGAGATACATTCTAAAGGAACTGTAGCCTGTTGCTGAACTCCCTCAAAACCGCTTGTCCTTTATTTTATTTCCTTTTGTCTCGTTCCTTCTGCTAGCGTATTCCTAATTTGTATGTCTTGCAGATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCAC</genome_strand>
        <mrna_strand>GGTAAGATGTGGAATCTATTCTATATAAGCTCCTCACT..........................................................................................................................................................................................GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG........................................................................................................GCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG......................................................................................GCGCCAAGATTCTTCTATAGGATTTGGCGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTAGTGATCTTATATCATATGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATCCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG...........................................................................................................................................................................................................................GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG......................................................................................................................................................................GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGNAGGGCGAAGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419556" ref_strand="-" ref_description="SGN-E419556 [STM-29-F24]">
      <seq>ggggataatattcagattgataccaaagacattctctttatatgtgtggagccttcattgacttggagaaaacaatctctgaaaggcgccaagattcttctataggatttggtgcaccagttcgcacaaacatgaggactggtggtgttacaagtgctgctgtgacgtcatctttattggagacagttgaaagtagtgatctaatatcatatggtctgatacctgagtttgtcggtcgatttcccatccttgttagtctgtcagctttaactgaggatcaacttgtgcaggttctaactgagccaaaaaatgcgctagggaagcagtacaaaaagatgttccaaatgaacggggtaaagttgcatttcgttgaagatgcactaagattgatagctaggaaagcattatctaaaaatactggtgctcgtggattgcgatccatattggagaacattttgatggatgctatgtatgagattcctgatgtcagaacaggcgatgatgtaatagatgccgttgtagttgatgaggagtcggtaggaactgagggacgaggatgtgggggtaaaatcctttatggcaaaggtgcatttgaccgacacttcccacagaatagatcaaaggattctgagtcaaacatggaggggtctgatggagaccatgaggcggaacaggagcttccctccattgttgctttgtaaatgttctgtgaggtgtatttctggtctcaattgtgtacagtaatctaaattcaaataaacaatgttatttaaatagagctcaatgtactttcatcttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59849" stop="63512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60156" g_stop="60226" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="85" r_length="70" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60313" g_stop="60412" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61062" g_stop="61166" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="290" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61386" g_stop="61448" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="353" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166">
            <donor d_prob="0.254" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61615" g_stop="61737" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="476" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62798" g_stop="62953" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="632" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63046" g_stop="63205" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="791" r_length="159" r_score="0.950"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63206" i_stop="63355" i_length="150">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.722" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63356" g_stop="63375" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="811" r_length="20" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E419556" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419556" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60156" e_stop="60226"/>
          <exon e_start="60313" e_stop="60412"/>
          <exon e_start="61062" e_stop="61166"/>
          <exon e_start="61386" e_stop="61448"/>
          <exon e_start="61615" e_stop="61737"/>
          <exon e_start="62798" e_stop="62953"/>
          <exon e_start="63046" e_stop="63205"/>
          <exon e_start="63356" e_stop="63375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAGGTCTTGCTACTTCCACGTCGTAGTTTTATCTCTTTCCTTTAGTCTGATATTCACCTTATTCCTGATATACTTGTTCTTGTTTTCAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTAAGTTTCTTCTGAACCCTTGCAGCTTAGCGAACCTTCCAGACCACATATACTAATAGTTTTTTAGCTTGATTGTGGTTGTATTTTGCATGATCATATATGTAGCCTCCATGTTAGCTGCATAGAGAAACTGATGTCTATGTGTTGCTGTGCTTATTGGTCAATGAAAGTAGTTACATGTGCATCAGATGAAGTCAAATATATGCTACAAGATGAACTGAGATATTAATTTACTGATGTGAAACTTGTTATTACTGTTTGCTATCATTATTCTTCTGCATCTCCAACACGTTTTTCCTAGAATTCGGGTTTTTCCCTGCATTTGTAGTTTGAGCAGATGCAGAGTTGTATTTGCTTTGACCAATTAAAAAAGAGTTGTATGTACTGTTTCATTTACTTCCTCTGGCTTGTTTTATGTCAGTTAAATAAAGTGATATTTGACTGAGATCTTTAAATTTATTATTTTTCCACTTTAATATGGAAAAAGTTCAGGCCCATATAGTACTTCATGTAATTTCTAAATATTTTAGTTTTATTTTTTGAACTATGGATAATTCCTGTGACCAATATAACTCTTTATTCTTACTCTTTTTTATGGCATGTTTTGAAGCATTTACTAATCATTGTACATAATACTCCTGTTATGCAGGTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATACTTGGAGACTTCTTTCTCAGGTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAGGTATGTAGTATGCCTTTTTTTCCTCTTCTTTTCCTCTGTGGACCTACAGCGTCTAGTGAGGACTGTTCAGAATATACGTTCTGTAGTTGTTATGCTAACCTGGAAATGAACTAGTTAATTATGTGAAGCAAACTGCTTGACATTATGAAATTTAATTACACATTTGCTTAGTGTACTTCTCTTCCAAGTTGCGCGGACTCTTCACTTTCTGTGCCGCTACATAGGGTGTAGGATCCGTACCCGATGTGGTCAACCAATTTTATGTTACCCAAAGTTGATGGTGAAATTCGGTACAGATACAATGATTTCTGTAATCAAAGCACAAGCTAAGGTAAAATTGAAGAAAATGGAATACTCTATGTTTACAAAATTTCTCTGTCAGTCATTTTCCTTGTATCACCTTATGGGATTCTCCTCTTGATCTATATTTTGTTATTTTTTCTTCATAATACCTTGTAAGTTCCCACAATATGTCTCATAATTTATACATATAACTCGACTTTTAGATTTTGAATTATTATTAGCCAAATCTCTACACTCATATTCATACCCCCGAATCTTAAAATTTAGATCATGAAGGATTTGACCTCTAGATCCACACTTGTATCAGACACTCACACCTGAGTCCGAGCAACTTAGCTTTTCTTTGGTTGTGGATTATATTGCTGAACATAATGTTCAAAATAAAATTGATCAGACCATGGTGCTTATTTCAAATTCTGAACATCTATGATCGTGCTTAGAACATCCAGGTTGAGTTCTCTGTATGTTTATATCATTAAATATGTACCGAGTTAATGACAAATACTTGTTGTTTTTCACCAAGTATACTATGAAAGCGTTAGCTGATAATTCTTTTTTAACTAATAAACAGAAAACAACCAATCAAAATTTGGGAGGGGATCATCTAAACAAAACATAAAAATAAATAGCCTGGAGAGATACATTCTAAAGGAACTGTAGCCTGTTGCTGAACTCCCTCAAAACCGCTTGTCCTTTATTTTATTTCCTTTTGTCTCGTTCCTTCTGCTAGCGTATTCCTAATTTGTATGTCTTGCAGATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAGGTAAGTTTAACCTGGCATGATCTGGTATCTGATGTCGCGAATACAGTGTTAAATTATAGTATTATAACGTTTTTCATGTTGCACTACTACAGGCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTTGCTATTTATTCTTTGATCTGCACTAGCTATATAATTCTGAAGTTAGAAAATGTCACCCTTCTCAACTTTTCTCTTGGTTATTATTTGAACAGAATATGCATCTTTATGATCTAGTCATCCTTTAGAAACACAAT</genome_strand>
        <mrna_strand>ATTGATACCAAAGACATTCTCTTTATATGT-GTGGAGCCTTCATTGACTTGGAGAAAACAATCTCTGAAAG......................................................................................GCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTAGTGATCTAATATCATATGGTCTGATACCTGAGTTTGTCGGTCGATTTCCCATCCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG...........................................................................................................................................................................................................................GTTCTAACTGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAAATGAACGGG......................................................................................................................................................................GTAAAGTTGCATTTCGTTGAAGATGCACTAAGATTGATAGCTAGGAAAGCATTATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAACATTTTGATGGATGCTATGTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCGGTAGGAACTGAGGGACGAGGATGTGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG............................................................................................TCAAACATGGAGGGGTCTGATGGAGACCATGAGGCGGAACAGGAGCTTCCCTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCAATTGTGTACAGTAATCT-AAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTT......................................................................................................................................................TCATCTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733124" ref_strand="+" ref_description="SGN-E733124 [LB04AB08]">
      <seq>gaggcaatgatattctctttatatgtggtggagccttcattgacttggagaaaacaatctcagaaaggcgccaagattcttctataggatttggcgcaccagttcgcacaaacatgaggactggtggtgttacaagtgctgctgtgacgtcatctttattggagacagttgaaagtagtgatcttatatcatatggtctgatacctgagtttgtcggccgattccccatccttgttagtctgtcagctttaactgaggatcaacttgtgcaggttctaacggagccaaaaaatgcgctagggaagcagtacaaaaagatgttccagatgaacggggtaaagttgcattttgttgaagctgcactaagattggtagctaggaaagcaatatctaaaaatactggtgctcgtggattgcgatccatattggagaatatattgatggatgctatgtatgagattcctgatgtcagaacaggcgatgatgtaatagatgccgttgtagttgatgaggagtctgtaggaactgaggggcgaggatgcgggggtaaaatcctttatggcaaaggtgcatttgaccgacacttcccacagaatagatcaaaggattctgaggcaaacatggaggcgtccgatggagaccatgaggcagaacaggagcttccttccattgttgctttgtaaatgttctgtgaggtgtatttctggtctcacttgtgtacagtaatctaaaattcaaataaacaatgttatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59864" stop="63492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60159" g_stop="60226" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60313" g_stop="60412" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="167" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61062" g_stop="61166" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="272" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61386" g_stop="61448" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="335" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166">
            <donor d_prob="0.254" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61615" g_stop="61737" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="458" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62798" g_stop="62953" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="614" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63046" g_stop="63199" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="768" r_length="154" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E733124" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60159" e_stop="60226"/>
          <exon e_start="60313" e_stop="60412"/>
          <exon e_start="61062" e_stop="61166"/>
          <exon e_start="61386" e_stop="61448"/>
          <exon e_start="61615" e_stop="61737"/>
          <exon e_start="62798" e_stop="62953"/>
          <exon e_start="63046" e_stop="63199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAGGTCTTGCTACTTCCACGTCGTAGTTTTATCTCTTTCCTTTAGTCTGATATTCACCTTATTCCTGATATACTTGTTCTTGTTTTCAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTAAGTTTCTTCTGAACCCTTGCAGCTTAGCGAACCTTCCAGACCACATATACTAATAGTTTTTTAGCTTGATTGTGGTTGTATTTTGCATGATCATATATGTAGCCTCCATGTTAGCTGCATAGAGAAACTGATGTCTATGTGTTGCTGTGCTTATTGGTCAATGAAAGTAGTTACATGTGCATCAGATGAAGTCAAATATATGCTACAAGATGAACTGAGATATTAATTTACTGATGTGAAACTTGTTATTACTGTTTGCTATCATTATTCTTCTGCATCTCCAACACGTTTTTCCTAGAATTCGGGTTTTTCCCTGCATTTGTAGTTTGAGCAGATGCAGAGTTGTATTTGCTTTGACCAATTAAAAAAGAGTTGTATGTACTGTTTCATTTACTTCCTCTGGCTTGTTTTATGTCAGTTAAATAAAGTGATATTTGACTGAGATCTTTAAATTTATTATTTTTCCACTTTAATATGGAAAAAGTTCAGGCCCATATAGTACTTCATGTAATTTCTAAATATTTTAGTTTTATTTTTTGAACTATGGATAATTCCTGTGACCAATATAACTCTTTATTCTTACTCTTTTTTATGGCATGTTTTGAAGCATTTACTAATCATTGTACATAATACTCCTGTTATGCAGGTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATACTTGGAGACTTCTTTCTCAGGTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAGGTATGTAGTATGCCTTTTTTTCCTCTTCTTTTCCTCTGTGGACCTACAGCGTCTAGTGAGGACTGTTCAGAATATACGTTCTGTAGTTGTTATGCTAACCTGGAAATGAACTAGTTAATTATGTGAAGCAAACTGCTTGACATTATGAAATTTAATTACACATTTGCTTAGTGTACTTCTCTTCCAAGTTGCGCGGACTCTTCACTTTCTGTGCCGCTACATAGGGTGTAGGATCCGTACCCGATGTGGTCAACCAATTTTATGTTACCCAAAGTTGATGGTGAAATTCGGTACAGATACAATGATTTCTGTAATCAAAGCACAAGCTAAGGTAAAATTGAAGAAAATGGAATACTCTATGTTTACAAAATTTCTCTGTCAGTCATTTTCCTTGTATCACCTTATGGGATTCTCCTCTTGATCTATATTTTGTTATTTTTTCTTCATAATACCTTGTAAGTTCCCACAATATGTCTCATAATTTATACATATAACTCGACTTTTAGATTTTGAATTATTATTAGCCAAATCTCTACACTCATATTCATACCCCCGAATCTTAAAATTTAGATCATGAAGGATTTGACCTCTAGATCCACACTTGTATCAGACACTCACACCTGAGTCCGAGCAACTTAGCTTTTCTTTGGTTGTGGATTATATTGCTGAACATAATGTTCAAAATAAAATTGATCAGACCATGGTGCTTATTTCAAATTCTGAACATCTATGATCGTGCTTAGAACATCCAGGTTGAGTTCTCTGTATGTTTATATCATTAAATATGTACCGAGTTAATGACAAATACTTGTTGTTTTTCACCAAGTATACTATGAAAGCGTTAGCTGATAATTCTTTTTTAACTAATAAACAGAAAACAACCAATCAAAATTTGGGAGGGGATCATCTAAACAAAACATAAAAATAAATAGCCTGGAGAGATACATTCTAAAGGAACTGTAGCCTGTTGCTGAACTCCCTCAAAACCGCTTGTCCTTTATTTTATTTCCTTTTGTCTCGTTCCTTCTGCTAGCGTATTCCTAATTTGTATGTCTTGCAGATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAGGTAAGTTTAACCTGGCATGATCTGGTATCTGATGTCGCGAATACAGTGTTAAATTATAGTATTATAACGTTTTTCATGTTGCACTACTACAGGCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAAT</genome_strand>
        <mrna_strand>GAGG-CAATGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG......................................................................................GCGCCAAGATTCTTCTATAGGATTTGGCGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTAGTGATCTTATATCATATGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATCCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG...........................................................................................................................................................................................................................GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG......................................................................................................................................................................GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG............................................................................................GCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAGCTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374035" ref_strand="+" ref_description="SGN-E374035 [TUS-33-G21](-)">
      <seq>agttcgcacaaacatgaggactggtggtgttacaagtgctgctgtgacgtcatctttattggagacagttgaaagtagtgatcttatatcatacggtctgatacctgagtttgtcggccgattccccattcttgttagtctgtcagctttaactgaggatcaacttgtgcaggttctaacggagccaaaaaatgcgctagggaagcagtacaaaaagatgttccagatgaacggggtaaagttgcattttgttgaagctgcactaagattggtagctaggaaagcaatatctaaaaatactggtgctcgtggattgcgatccatattggagaatatattgatggatgctatgtatgagattcctgatgtcagaacaggcgatgatgtaatagatgccgttgtagttgatgaggagtctgtaggaactgaggggcgaggatgcgggggtaaaatcctttatggcaaaggtgcatttgaccgacacttcccacagaatagatcaaaggattctgaggcaaacatggaggcgtccgatggagaccatgaggcagaacaggaacttccttccattgttgctttgtaaatgttctgtgaggtgtatttctggtctcacttgtgtacagtaatctaaaattcaaataaacaatgttatttaaatagagctcaatgtactttcatactgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="60046" stop="63515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60346" g_stop="60412" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61062" g_stop="61166" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="172" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61386" g_stop="61448" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="235" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166">
            <donor d_prob="0.254" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61615" g_stop="61737" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="358" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62798" g_stop="62953" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="514" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63046" g_stop="63214" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="683" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="695"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E374035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60346" e_stop="60412"/>
          <exon e_start="61062" e_stop="61166"/>
          <exon e_start="61386" e_stop="61448"/>
          <exon e_start="61615" e_stop="61737"/>
          <exon e_start="62798" e_stop="62953"/>
          <exon e_start="63046" e_stop="63214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTAAGTTTCTTCTGAACCCTTGCAGCTTAGCGAACCTTCCAGACCACATATACTAATAGTTTTTTAGCTTGATTGTGGTTGTATTTTGCATGATCATATATGTAGCCTCCATGTTAGCTGCATAGAGAAACTGATGTCTATGTGTTGCTGTGCTTATTGGTCAATGAAAGTAGTTACATGTGCATCAGATGAAGTCAAATATATGCTACAAGATGAACTGAGATATTAATTTACTGATGTGAAACTTGTTATTACTGTTTGCTATCATTATTCTTCTGCATCTCCAACACGTTTTTCCTAGAATTCGGGTTTTTCCCTGCATTTGTAGTTTGAGCAGATGCAGAGTTGTATTTGCTTTGACCAATTAAAAAAGAGTTGTATGTACTGTTTCATTTACTTCCTCTGGCTTGTTTTATGTCAGTTAAATAAAGTGATATTTGACTGAGATCTTTAAATTTATTATTTTTCCACTTTAATATGGAAAAAGTTCAGGCCCATATAGTACTTCATGTAATTTCTAAATATTTTAGTTTTATTTTTTGAACTATGGATAATTCCTGTGACCAATATAACTCTTTATTCTTACTCTTTTTTATGGCATGTTTTGAAGCATTTACTAATCATTGTACATAATACTCCTGTTATGCAGGTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATACTTGGAGACTTCTTTCTCAGGTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAGGTATGTAGTATGCCTTTTTTTCCTCTTCTTTTCCTCTGTGGACCTACAGCGTCTAGTGAGGACTGTTCAGAATATACGTTCTGTAGTTGTTATGCTAACCTGGAAATGAACTAGTTAATTATGTGAAGCAAACTGCTTGACATTATGAAATTTAATTACACATTTGCTTAGTGTACTTCTCTTCCAAGTTGCGCGGACTCTTCACTTTCTGTGCCGCTACATAGGGTGTAGGATCCGTACCCGATGTGGTCAACCAATTTTATGTTACCCAAAGTTGATGGTGAAATTCGGTACAGATACAATGATTTCTGTAATCAAAGCACAAGCTAAGGTAAAATTGAAGAAAATGGAATACTCTATGTTTACAAAATTTCTCTGTCAGTCATTTTCCTTGTATCACCTTATGGGATTCTCCTCTTGATCTATATTTTGTTATTTTTTCTTCATAATACCTTGTAAGTTCCCACAATATGTCTCATAATTTATACATATAACTCGACTTTTAGATTTTGAATTATTATTAGCCAAATCTCTACACTCATATTCATACCCCCGAATCTTAAAATTTAGATCATGAAGGATTTGACCTCTAGATCCACACTTGTATCAGACACTCACACCTGAGTCCGAGCAACTTAGCTTTTCTTTGGTTGTGGATTATATTGCTGAACATAATGTTCAAAATAAAATTGATCAGACCATGGTGCTTATTTCAAATTCTGAACATCTATGATCGTGCTTAGAACATCCAGGTTGAGTTCTCTGTATGTTTATATCATTAAATATGTACCGAGTTAATGACAAATACTTGTTGTTTTTCACCAAGTATACTATGAAAGCGTTAGCTGATAATTCTTTTTTAACTAATAAACAGAAAACAACCAATCAAAATTTGGGAGGGGATCATCTAAACAAAACATAAAAATAAATAGCCTGGAGAGATACATTCTAAAGGAACTGTAGCCTGTTGCTGAACTCCCTCAAAACCGCTTGTCCTTTATTTTATTTCCTTTTGTCTCGTTCCTTCTGCTAGCGTATTCCTAATTTGTATGTCTTGCAGATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAGGTAAGTTTAACCTGGCATGATCTGGTATCTGATGTCGCGAATACAGTGTTAAATTATAGTATTATAACGTTTTTCATGTTGCACTACTACAGGCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGC</genome_strand>
        <mrna_strand>AGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG...........................................................................................................................................................................................................................GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG......................................................................................................................................................................GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG............................................................................................GCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389478" ref_strand="+" ref_description="SGN-E389478 [TUS-4-C14](-)">
      <seq>gtttgtcggccgattccccattcttgttagtctgtcagctttaactgaggatcaacttgtgcaggttctaacggagccaaaaaatgcgctagggaagcagtacaaaaagatgttccagatgaacggggtaaagttgcattttgttgaagctgcactaagattggtagctaggaaagcaatatctaaaaatactggtgctcgtggattgcgatccatattggagaatatattgatggatgctatgtatgagattcctgatgtcagaacaggcgatgatgtaatagatgccgttgtagttgatgaggagtctgtaggaactgaggggcgaggatgcgggggtaaaatcctttatggcaaaggtgcatttgaccgacacttcccacagaatagatcaaaggattctgaggcaaacatggaggcgtccgatggagaccatgaggcagaacaggaacttccttccattgttgctttgtaaatgttctgtgaggtgtatttctggtctcacttgtgtacagtaatctaaaattcaaataaacaatgttatttaaatagagctcaatgtactttcatactgcattttgttgtgtttttactgttatctggatatttattctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="60803" stop="63558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61103" g_stop="61166" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61386" g_stop="61448" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="127" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166">
            <donor d_prob="0.254" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61615" g_stop="61737" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="250" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62798" g_stop="62953" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="406" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63046" g_stop="63258" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="619" r_length="213" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E389478" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61103" e_stop="61166"/>
          <exon e_start="61386" e_stop="61448"/>
          <exon e_start="61615" e_stop="61737"/>
          <exon e_start="62798" e_stop="62953"/>
          <exon e_start="63046" e_stop="63258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTAATGACTAATGTTTGCCGTAACTTGGTTCTTTGGCACTAATTGCCTTGTGCACATTATTAGGGCTTGTATGGAAAGCTGGGTCTTCCTTTGCTTGAATAAGGTGGATTTGTACATAAGTTCTGCCATTGGGTTTAATCTTCCAGTACTTTCATCCAGAATATGAGATTATAGAGCAAATTTTGATTTTTCTCTTCTCTCTGTTTCGCTTCTTTGCAGGTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTGAGTGTTAGCCTCTCAAAATCTTTCTTGGGTATGCAGAAAGATGCATCGTTTTATCTTTTTAGACCCTGTATCATATGGGCAAGGAGCTGGTTGGAGCTTTTCTGGGTTCCTGTTGATTTGATCAGAATGTTACTTCTCTCATACTTGGAGACTTCTTTCTCAGGTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAGGTATGTAGTATGCCTTTTTTTCCTCTTCTTTTCCTCTGTGGACCTACAGCGTCTAGTGAGGACTGTTCAGAATATACGTTCTGTAGTTGTTATGCTAACCTGGAAATGAACTAGTTAATTATGTGAAGCAAACTGCTTGACATTATGAAATTTAATTACACATTTGCTTAGTGTACTTCTCTTCCAAGTTGCGCGGACTCTTCACTTTCTGTGCCGCTACATAGGGTGTAGGATCCGTACCCGATGTGGTCAACCAATTTTATGTTACCCAAAGTTGATGGTGAAATTCGGTACAGATACAATGATTTCTGTAATCAAAGCACAAGCTAAGGTAAAATTGAAGAAAATGGAATACTCTATGTTTACAAAATTTCTCTGTCAGTCATTTTCCTTGTATCACCTTATGGGATTCTCCTCTTGATCTATATTTTGTTATTTTTTCTTCATAATACCTTGTAAGTTCCCACAATATGTCTCATAATTTATACATATAACTCGACTTTTAGATTTTGAATTATTATTAGCCAAATCTCTACACTCATATTCATACCCCCGAATCTTAAAATTTAGATCATGAAGGATTTGACCTCTAGATCCACACTTGTATCAGACACTCACACCTGAGTCCGAGCAACTTAGCTTTTCTTTGGTTGTGGATTATATTGCTGAACATAATGTTCAAAATAAAATTGATCAGACCATGGTGCTTATTTCAAATTCTGAACATCTATGATCGTGCTTAGAACATCCAGGTTGAGTTCTCTGTATGTTTATATCATTAAATATGTACCGAGTTAATGACAAATACTTGTTGTTTTTCACCAAGTATACTATGAAAGCGTTAGCTGATAATTCTTTTTTAACTAATAAACAGAAAACAACCAATCAAAATTTGGGAGGGGATCATCTAAACAAAACATAAAAATAAATAGCCTGGAGAGATACATTCTAAAGGAACTGTAGCCTGTTGCTGAACTCCCTCAAAACCGCTTGTCCTTTATTTTATTTCCTTTTGTCTCGTTCCTTCTGCTAGCGTATTCCTAATTTGTATGTCTTGCAGATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAGGTAAGTTTAACCTGGCATGATCTGGTATCTGATGTCGCGAATACAGTGTTAAATTATAGTATTATAACGTTTTTCATGTTGCACTACTACAGGCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTTGCTATTTATTCTTTGAT</genome_strand>
        <mrna_strand>GTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG...........................................................................................................................................................................................................................GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG......................................................................................................................................................................GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG............................................................................................GCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTGGATATTTATTCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330196" ref_strand="+" ref_description="SGN-E330196 [cTOD-4-G13]">
      <seq>ccgatctctataatttcatttcttttgcttcttcttcttgttgttgttcttgccgttaatatatcaagaaatgtgaattttgtgatatgcgccatttgtgacttgaaatttattgggtggagagaaagattgaatctttttctctatttgataattgggtcaaagtgggttgctttcagattttgtaaaggagcaatggaaatggagaacattgagtgtgtttcaacaactgatgggattgaagatgaagagatccagttatcacataatcaattttcttctgcaaaacctcataatattctttttcccggacttgcccctactagtgtacatgaattgcttgaatgccccgtttgtaccaattctatgtatccaccaattcatcagtgtcacaatgggcacacactttgttctacctgcaaaacaagggtgcacaatcgatgtcctacatgtagacaagagcttggtgatataaggtgcttagctctggagaaggttgcagagtcacttgaactgccttgcaaatatttttccttgggatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70623" stop="73999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70923" g_stop="71309" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71310" i_stop="73541" i_length="2232">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73542" g_stop="73699" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="545" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E330196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70923" e_stop="71309"/>
          <exon e_start="73542" e_stop="73699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCTCTATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAGGTAATTTTTCTTTTTGTTTGTTTGGGTTTTGTCCCTTTTCCTATTTGTGAGATTCGTTTGTTTTCGTTTTTTTCTATGTAAAGGTTGGGTTTTTATGTCTTCAATGTTAATTCTTTGCTGTTTTTTGTTGATGGAAAATGATGTTAAATGTGTTGGAAATGATATGTTGATCTTTCTATGTGCTATTTTTTCCTTTAAGTTAAAAGCTGATTTTGTTAGAATTTTCAAATGCTCTTTTGACTCTTTAGAAATATTGCAAACTTTAGATTGAGGTAAAGCATGATAATCGGGGTTGATAGTTTTGGTTGTGGTATGTTGAGGAAGTGGGGATGATGAAAGACTTTTTGGAGAATTTGATTAGGTTTTTATGAATTTCAGAATGTTTAAATATTTGATGATCAACTTGTAACAGCTTGAGTTTTCTAAAATGACTGCAGACTATTGGTTATGCTGTATACTTTTTGACTGCTGGTTGTTCGCCGAATGAAGGCCACTGAACTTAACTGTTTTGCAATTAACTTAGTAGTTGATTTTTTTTTCATGAATATGAAAGAGAGATGTTTGCTGCTTGTTGAATAAACATATCAGCCTTATGACTTTGTTCTTTAATTTGGATTCTTCCATGAGATGGATTAATGAGAAAGATCTTTTCAGCCCCTTGCACCCAAAGATGTGGGATAGCAGTCAATGAATTGGGTGAAAATGATGTGAGACCAGGGTTCAAATTTTAGCTGAGAAAATAAAAATTGCTTTGTGATTTCCTCTCGATCTAAATCTTGGAGGCAGAGTAACTTGATACTTCTGCTAGTGGACATGGTAGGTACACGGTGGAACAGTCTAAGAGAGCAGATAATAGGTCCAAACACCACCATTATGAAAAACGTACTCTTGTTAATGTATTAGTATAGCAGCTCTGTGGAGAGTTACGCTGTTGTAACATCTGCCAGCTGCGTAGATAGGTTATAGTCATATTCTGCTTATTAATGCTCTTGGAAGATCATTATCTTTGATTGAGATTTGTGCAGCCTTTTAGGCTTTTGCCATTTTAGCATTGTATACTAGTGTAGTCTTAGAAGAAGGTTGCATCAACTTGGTCCTATAGATGTTAACATATGTAGGATAGGGTTGTCTGGGAAAAGAAATGAGTCTTCTGTCGGGAAGGCACTCAATCTATGGCAAACCACATAACCCTTACTGCTTTCACCCCAGTCAATGGTAAATAAATAATTACATGAAATTCCTCCTCGCTGGACAGAAAATGAGAGACTTGAGAAGGTGGAAAAGAAACTGTTTGTGAAAGTTTTGATGTGTTTGTATAACTGCAATTTACAAAGTTAAATTATATTGTTTCACCCTGTTATTATGAGTAAATTTTCTTGGATAAGTTATAAATGCAAATGGTACTCTCGGTGAGAGTAATTCAGCTATGGTCTTCCAGGAAATATGGAATGCCACTAGGAATTGTATAAGCCGAAATTAGAAATACATCAGCATATATATAGGTATCGTCTTTCTAGTTTATTTATGGGAAGCCTGTAAGTTGGTATAATCTTTGAGTATATTTCAGGTGACTTCATTGCAATTTGACATCGCTTAATTCTAATTCACTAGGATTCTATGAGCAGATATAGGAACTCCTCAGCATATATAGTTGCTATATTTTTGTTTCATTTTTTTAAGCCTGTTGGTACAACCTGAGAGTATATTTCAGGCAACTTGATCGAAATTTACATTGCTTGTATCTTATATAATAAATGCATTAAGTTTGTTTTCTGTTGAGAACAAGTCGGAAACTTGTCATGCATAACCACAGTTGACTAAATATCTGCCGTGGTTGAATCCTAAGGAAGAAAGATGGTAGCATAGGGTAGAGTAGATTCGTAACTTGTCTACCAAATTATTATCAATTAGTAAAAGAAGGCTTTGGCGGCTAAATCTAATAGCAGACTGCGCTTTCCTACATCATATAGAGTGGAAAGCATGTCCTTAGAGAATGTTGGACTTGTATAACCACTAACGAATATGTGTCGTCTCCTTACCCTAGAGCTTTCTCATTTGTTAAATTTTGTTTTTATGATTTTCCTTGCTGCAAGTAAGTTATTTTCTGATGATAGTTTGTGGTGCATAAACTGGGTGACTCGTAACAATCGTCTATGCTTTTGTTCATTTTTGTAAAATTAGAGTTCTTACAGTTGTGACTTGTGAAGACTTAAAAGTTTGTTTATTTTGCAGTGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCC</genome_strand>
        <mrna_strand>CCGATCTCTATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689411" ref_strand="+" ref_description="SGN-E689411 [t3_tus_84_J23]">
      <seq>tataatttcatttcttttgcttcttcttcttgttgttgttcttgccgttaatatatcaagaaatgtgaattttgtgatatgcgccatttgtgacttgaaatttattgggtggagagaaagattgaatctttttctctatttgataattgggtcaaagtgggttgctttcagattttgtaaaggagcaatggaaatggagaacattgagtgtgtttcaacaactgatgggattgaagatgaagagatccagttatcacataatcaattttcttctgcaaaacctcataatattctttttcccggacttgcccctactagtgtacatgaattgcttgaatgccccgtttgtaccaattctatgtatccaccaattcatcagtgtcacaatgggcacacactttgttctacctgcaaaacaagggtgcacaatcgatgtcctacatgtagacnagagcttggtgatataaggtgcttagctctggagaaggttgcagagtcacttgaactgccttgcaaatatttttccttgggatgcccagaaatattcccgtattacagtaagctcaagcatgaggcactgtgcaactttagaccatacaattgcccatatgctggatcagaatgttcagtgactggtgacatcccttatttggtttcacatttaagagatgatcacaaagtggatatgcacacggggtgcacattcaaccatcgttacgtgaaatcaaatcctcgagaagtagaaaatgccacatggatgctgacggtcttccattgttttggacagtatttctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70631" stop="74957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70931" g_stop="71309" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71310" i_stop="73541" i_length="2232">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73542" g_stop="73928" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="766" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73929" i_stop="74625" i_length="697">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.189" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74626" g_stop="74657" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="798" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E689411" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70931" e_stop="71309"/>
          <exon e_start="73542" e_stop="73928"/>
          <exon e_start="74626" e_stop="74657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAGGTAATTTTTCTTTTTGTTTGTTTGGGTTTTGTCCCTTTTCCTATTTGTGAGATTCGTTTGTTTTCGTTTTTTTCTATGTAAAGGTTGGGTTTTTATGTCTTCAATGTTAATTCTTTGCTGTTTTTTGTTGATGGAAAATGATGTTAAATGTGTTGGAAATGATATGTTGATCTTTCTATGTGCTATTTTTTCCTTTAAGTTAAAAGCTGATTTTGTTAGAATTTTCAAATGCTCTTTTGACTCTTTAGAAATATTGCAAACTTTAGATTGAGGTAAAGCATGATAATCGGGGTTGATAGTTTTGGTTGTGGTATGTTGAGGAAGTGGGGATGATGAAAGACTTTTTGGAGAATTTGATTAGGTTTTTATGAATTTCAGAATGTTTAAATATTTGATGATCAACTTGTAACAGCTTGAGTTTTCTAAAATGACTGCAGACTATTGGTTATGCTGTATACTTTTTGACTGCTGGTTGTTCGCCGAATGAAGGCCACTGAACTTAACTGTTTTGCAATTAACTTAGTAGTTGATTTTTTTTTCATGAATATGAAAGAGAGATGTTTGCTGCTTGTTGAATAAACATATCAGCCTTATGACTTTGTTCTTTAATTTGGATTCTTCCATGAGATGGATTAATGAGAAAGATCTTTTCAGCCCCTTGCACCCAAAGATGTGGGATAGCAGTCAATGAATTGGGTGAAAATGATGTGAGACCAGGGTTCAAATTTTAGCTGAGAAAATAAAAATTGCTTTGTGATTTCCTCTCGATCTAAATCTTGGAGGCAGAGTAACTTGATACTTCTGCTAGTGGACATGGTAGGTACACGGTGGAACAGTCTAAGAGAGCAGATAATAGGTCCAAACACCACCATTATGAAAAACGTACTCTTGTTAATGTATTAGTATAGCAGCTCTGTGGAGAGTTACGCTGTTGTAACATCTGCCAGCTGCGTAGATAGGTTATAGTCATATTCTGCTTATTAATGCTCTTGGAAGATCATTATCTTTGATTGAGATTTGTGCAGCCTTTTAGGCTTTTGCCATTTTAGCATTGTATACTAGTGTAGTCTTAGAAGAAGGTTGCATCAACTTGGTCCTATAGATGTTAACATATGTAGGATAGGGTTGTCTGGGAAAAGAAATGAGTCTTCTGTCGGGAAGGCACTCAATCTATGGCAAACCACATAACCCTTACTGCTTTCACCCCAGTCAATGGTAAATAAATAATTACATGAAATTCCTCCTCGCTGGACAGAAAATGAGAGACTTGAGAAGGTGGAAAAGAAACTGTTTGTGAAAGTTTTGATGTGTTTGTATAACTGCAATTTACAAAGTTAAATTATATTGTTTCACCCTGTTATTATGAGTAAATTTTCTTGGATAAGTTATAAATGCAAATGGTACTCTCGGTGAGAGTAATTCAGCTATGGTCTTCCAGGAAATATGGAATGCCACTAGGAATTGTATAAGCCGAAATTAGAAATACATCAGCATATATATAGGTATCGTCTTTCTAGTTTATTTATGGGAAGCCTGTAAGTTGGTATAATCTTTGAGTATATTTCAGGTGACTTCATTGCAATTTGACATCGCTTAATTCTAATTCACTAGGATTCTATGAGCAGATATAGGAACTCCTCAGCATATATAGTTGCTATATTTTTGTTTCATTTTTTTAAGCCTGTTGGTACAACCTGAGAGTATATTTCAGGCAACTTGATCGAAATTTACATTGCTTGTATCTTATATAATAAATGCATTAAGTTTGTTTTCTGTTGAGAACAAGTCGGAAACTTGTCATGCATAACCACAGTTGACTAAATATCTGCCGTGGTTGAATCCTAAGGAAGAAAGATGGTAGCATAGGGTAGAGTAGATTCGTAACTTGTCTACCAAATTATTATCAATTAGTAAAAGAAGGCTTTGGCGGCTAAATCTAATAGCAGACTGCGCTTTCCTACATCATATAGAGTGGAAAGCATGTCCTTAGAGAATGTTGGACTTGTATAACCACTAACGAATATGTGTCGTCTCCTTACCCTAGAGCTTTCTCATTTGTTAAATTTTGTTTTTATGATTTTCCTTGCTGCAAGTAAGTTATTTTCTGATGATAGTTTGTGGTGCATAAACTGGGTGACTCGTAACAATCGTCTATGCTTTTGTTCATTTTTGTAAAATTAGAGTTCTTACAGTTGTGACTTGTGAAGACTTAAAAGTTTGTTTATTTTGCAGTGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCCTTATTTGGTTTCACATTTAAGAGATGATCACAAAGTGGATATGCACACGGGGTGCACATTCAACCATCGTTACGTGAAATCAAATCCTCGAGAAGTAGAAAATGCCACATGGATGCTGACGGTAAGTCCATCAACTTTTTAATTTATTTTTTTGAGTTCAATAATGATGCTCAACATAGCATCATGATTCATGTGTTGTATGTTCCGTGCTATTTTGGTTTATGAAAGTTCAAGAATCCTTTTTATTCACCCTAACAATCAGGATGCTAAGAAATAGACCCGTAAAAGTTCTGTGGATGAATTATTGAAATGGCAGAATGTGGATAACCAAATTATAGCTTTGGGAAACCCTGTATTATCTTGTTCTCTGTTTCTGCAATATTTTCTCTCATGTTTTCTTTGATAGGTAGATCCCTTCCTAGAGACTCTGTTAAGGAATAGATTGGACAGTATAATATCATTCTGTTGAAGGTCACACGTCTCTCATTAATTGGATATTGAGTTTCTGAATATCGACGAAGGAAGAAAGACATCCTTATGATGGTCTTCAAATAAAGAAAAATGACATCCTTATGGTGATCTTCAAATTAAAAAAAATTGGCCTGCATGATGTCGACGAAGATGTACTGTGGCATTTTACTTTTATATTATGTACAAATACAAGATAGATAGGGATGAATTTCAAGGCACGACATGTTTTAATTTCTGCCTAGACATGTTGTGGTTGCCTGGATTCTGCATAATGTCATTTTCTCTATATCCATGTTGACGTATCCCCAGTTCATTCTCATTGACCAACCTTGTTACTCCTTTCTCAGGTCTTCCATTGTTTTGGACAGTATTTCTGTCT</genome_strand>
        <mrna_strand>TATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACNAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCCTTATTTGGTTTCACATTTAAGAGATGATCACAAAGTGGATATGCACACGGGGTGCACATTCAACCATCGTTACGTGAAATCAAATCCTCGAGAAGTAGAAAATGCCACATGGATGCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCATTGTTTTGGACAGTATTTCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334149" ref_strand="+" ref_description="SGN-E334149 [cTOD-21-E10]">
      <seq>ataatttcatttcttttgcttcttcttcttgttgttgttcttgccgttaatatatcaagaaatgtgaattttgtgatatgcgccatttgtgacttgaaatttattgggtggagagaaagattgaatctttttctctatttgataattgggtcaaagtgggttgctttcagattttgtaaaggagcaatggaaatggagaacattgagtgtgtttcaacaactgatgggattgaagatgaagagatccagttatcacataatcaattttcttctgcaaaacctcataatattctttttcccggacttgcccctactagtgtacatgaattgcttgaatgccccgtttgtaccaattctatgtatccaccaattcatcagtgtcacaatgggcacacactttgttctacctgcaaaacaagggtgcacaatcgatgtcctacatgtagacaagagcttggtgatataaggtgcttagctctggagaaggttgcagagtcacttgaactgccttgcaaatatttttccttgggatgcccagaaatattcccgtattacagtaagctcaagcatgaggcactgtgcaactttagaccatacaattgcccatatgctggatcagaatgttcagtgactggtgacatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70632" stop="74107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70932" g_stop="71309" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71310" i_stop="73541" i_length="2232">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73542" g_stop="73807" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="644" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E334149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70932" e_stop="71309"/>
          <exon e_start="73542" e_stop="73807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAGGTAATTTTTCTTTTTGTTTGTTTGGGTTTTGTCCCTTTTCCTATTTGTGAGATTCGTTTGTTTTCGTTTTTTTCTATGTAAAGGTTGGGTTTTTATGTCTTCAATGTTAATTCTTTGCTGTTTTTTGTTGATGGAAAATGATGTTAAATGTGTTGGAAATGATATGTTGATCTTTCTATGTGCTATTTTTTCCTTTAAGTTAAAAGCTGATTTTGTTAGAATTTTCAAATGCTCTTTTGACTCTTTAGAAATATTGCAAACTTTAGATTGAGGTAAAGCATGATAATCGGGGTTGATAGTTTTGGTTGTGGTATGTTGAGGAAGTGGGGATGATGAAAGACTTTTTGGAGAATTTGATTAGGTTTTTATGAATTTCAGAATGTTTAAATATTTGATGATCAACTTGTAACAGCTTGAGTTTTCTAAAATGACTGCAGACTATTGGTTATGCTGTATACTTTTTGACTGCTGGTTGTTCGCCGAATGAAGGCCACTGAACTTAACTGTTTTGCAATTAACTTAGTAGTTGATTTTTTTTTCATGAATATGAAAGAGAGATGTTTGCTGCTTGTTGAATAAACATATCAGCCTTATGACTTTGTTCTTTAATTTGGATTCTTCCATGAGATGGATTAATGAGAAAGATCTTTTCAGCCCCTTGCACCCAAAGATGTGGGATAGCAGTCAATGAATTGGGTGAAAATGATGTGAGACCAGGGTTCAAATTTTAGCTGAGAAAATAAAAATTGCTTTGTGATTTCCTCTCGATCTAAATCTTGGAGGCAGAGTAACTTGATACTTCTGCTAGTGGACATGGTAGGTACACGGTGGAACAGTCTAAGAGAGCAGATAATAGGTCCAAACACCACCATTATGAAAAACGTACTCTTGTTAATGTATTAGTATAGCAGCTCTGTGGAGAGTTACGCTGTTGTAACATCTGCCAGCTGCGTAGATAGGTTATAGTCATATTCTGCTTATTAATGCTCTTGGAAGATCATTATCTTTGATTGAGATTTGTGCAGCCTTTTAGGCTTTTGCCATTTTAGCATTGTATACTAGTGTAGTCTTAGAAGAAGGTTGCATCAACTTGGTCCTATAGATGTTAACATATGTAGGATAGGGTTGTCTGGGAAAAGAAATGAGTCTTCTGTCGGGAAGGCACTCAATCTATGGCAAACCACATAACCCTTACTGCTTTCACCCCAGTCAATGGTAAATAAATAATTACATGAAATTCCTCCTCGCTGGACAGAAAATGAGAGACTTGAGAAGGTGGAAAAGAAACTGTTTGTGAAAGTTTTGATGTGTTTGTATAACTGCAATTTACAAAGTTAAATTATATTGTTTCACCCTGTTATTATGAGTAAATTTTCTTGGATAAGTTATAAATGCAAATGGTACTCTCGGTGAGAGTAATTCAGCTATGGTCTTCCAGGAAATATGGAATGCCACTAGGAATTGTATAAGCCGAAATTAGAAATACATCAGCATATATATAGGTATCGTCTTTCTAGTTTATTTATGGGAAGCCTGTAAGTTGGTATAATCTTTGAGTATATTTCAGGTGACTTCATTGCAATTTGACATCGCTTAATTCTAATTCACTAGGATTCTATGAGCAGATATAGGAACTCCTCAGCATATATAGTTGCTATATTTTTGTTTCATTTTTTTAAGCCTGTTGGTACAACCTGAGAGTATATTTCAGGCAACTTGATCGAAATTTACATTGCTTGTATCTTATATAATAAATGCATTAAGTTTGTTTTCTGTTGAGAACAAGTCGGAAACTTGTCATGCATAACCACAGTTGACTAAATATCTGCCGTGGTTGAATCCTAAGGAAGAAAGATGGTAGCATAGGGTAGAGTAGATTCGTAACTTGTCTACCAAATTATTATCAATTAGTAAAAGAAGGCTTTGGCGGCTAAATCTAATAGCAGACTGCGCTTTCCTACATCATATAGAGTGGAAAGCATGTCCTTAGAGAATGTTGGACTTGTATAACCACTAACGAATATGTGTCGTCTCCTTACCCTAGAGCTTTCTCATTTGTTAAATTTTGTTTTTATGATTTTCCTTGCTGCAAGTAAGTTATTTTCTGATGATAGTTTGTGGTGCATAAACTGGGTGACTCGTAACAATCGTCTATGCTTTTGTTCATTTTTGTAAAATTAGAGTTCTTACAGTTGTGACTTGTGAAGACTTAAAAGTTTGTTTATTTTGCAGTGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCC</genome_strand>
        <mrna_strand>ATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333495" ref_strand="+" ref_description="SGN-E333495 [cTOD-20-P11]">
      <seq>ataatttcatttcttttgcttcttcttcttgttgttgttcttgccgttaatatatcaagaaatgtgaattttgtgatatgcgccatttgtgacttgaaatttattgggtggagagaaagattgaatctttttctctatttgataattgggtcaaagtgggttgctttcagattttgtaaaggagcaatggaaatggagaacattgagtgtgtttcaacaactgatgggattgaagatgaagagatccagttatcacataatcaattttcttctgcaaaacctcataatattctttttcccggacttgcccctactagtgtacatgaattgcttgaatgccccgtttgtaccaattctatgtatccaccaattcatcagtgtcacaatgggcacacactttgttctacctgcaaaacaagggtgcacaatcgatgtcctacatgtagacaagagcttggtgatataaggtgcttagctctggagaaggttgcagagtcacttgaactgccttgcaaatattttttccttgggatgcccagaaatattcccgtattacagtaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70632" stop="74026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70932" g_stop="71309" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71310" i_stop="73541" i_length="2232">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73542" g_stop="73726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="564" r_length="186" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E333495" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70932" e_stop="71309"/>
          <exon e_start="73542" e_stop="73726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAGGTAATTTTTCTTTTTGTTTGTTTGGGTTTTGTCCCTTTTCCTATTTGTGAGATTCGTTTGTTTTCGTTTTTTTCTATGTAAAGGTTGGGTTTTTATGTCTTCAATGTTAATTCTTTGCTGTTTTTTGTTGATGGAAAATGATGTTAAATGTGTTGGAAATGATATGTTGATCTTTCTATGTGCTATTTTTTCCTTTAAGTTAAAAGCTGATTTTGTTAGAATTTTCAAATGCTCTTTTGACTCTTTAGAAATATTGCAAACTTTAGATTGAGGTAAAGCATGATAATCGGGGTTGATAGTTTTGGTTGTGGTATGTTGAGGAAGTGGGGATGATGAAAGACTTTTTGGAGAATTTGATTAGGTTTTTATGAATTTCAGAATGTTTAAATATTTGATGATCAACTTGTAACAGCTTGAGTTTTCTAAAATGACTGCAGACTATTGGTTATGCTGTATACTTTTTGACTGCTGGTTGTTCGCCGAATGAAGGCCACTGAACTTAACTGTTTTGCAATTAACTTAGTAGTTGATTTTTTTTTCATGAATATGAAAGAGAGATGTTTGCTGCTTGTTGAATAAACATATCAGCCTTATGACTTTGTTCTTTAATTTGGATTCTTCCATGAGATGGATTAATGAGAAAGATCTTTTCAGCCCCTTGCACCCAAAGATGTGGGATAGCAGTCAATGAATTGGGTGAAAATGATGTGAGACCAGGGTTCAAATTTTAGCTGAGAAAATAAAAATTGCTTTGTGATTTCCTCTCGATCTAAATCTTGGAGGCAGAGTAACTTGATACTTCTGCTAGTGGACATGGTAGGTACACGGTGGAACAGTCTAAGAGAGCAGATAATAGGTCCAAACACCACCATTATGAAAAACGTACTCTTGTTAATGTATTAGTATAGCAGCTCTGTGGAGAGTTACGCTGTTGTAACATCTGCCAGCTGCGTAGATAGGTTATAGTCATATTCTGCTTATTAATGCTCTTGGAAGATCATTATCTTTGATTGAGATTTGTGCAGCCTTTTAGGCTTTTGCCATTTTAGCATTGTATACTAGTGTAGTCTTAGAAGAAGGTTGCATCAACTTGGTCCTATAGATGTTAACATATGTAGGATAGGGTTGTCTGGGAAAAGAAATGAGTCTTCTGTCGGGAAGGCACTCAATCTATGGCAAACCACATAACCCTTACTGCTTTCACCCCAGTCAATGGTAAATAAATAATTACATGAAATTCCTCCTCGCTGGACAGAAAATGAGAGACTTGAGAAGGTGGAAAAGAAACTGTTTGTGAAAGTTTTGATGTGTTTGTATAACTGCAATTTACAAAGTTAAATTATATTGTTTCACCCTGTTATTATGAGTAAATTTTCTTGGATAAGTTATAAATGCAAATGGTACTCTCGGTGAGAGTAATTCAGCTATGGTCTTCCAGGAAATATGGAATGCCACTAGGAATTGTATAAGCCGAAATTAGAAATACATCAGCATATATATAGGTATCGTCTTTCTAGTTTATTTATGGGAAGCCTGTAAGTTGGTATAATCTTTGAGTATATTTCAGGTGACTTCATTGCAATTTGACATCGCTTAATTCTAATTCACTAGGATTCTATGAGCAGATATAGGAACTCCTCAGCATATATAGTTGCTATATTTTTGTTTCATTTTTTTAAGCCTGTTGGTACAACCTGAGAGTATATTTCAGGCAACTTGATCGAAATTTACATTGCTTGTATCTTATATAATAAATGCATTAAGTTTGTTTTCTGTTGAGAACAAGTCGGAAACTTGTCATGCATAACCACAGTTGACTAAATATCTGCCGTGGTTGAATCCTAAGGAAGAAAGATGGTAGCATAGGGTAGAGTAGATTCGTAACTTGTCTACCAAATTATTATCAATTAGTAAAAGAAGGCTTTGGCGGCTAAATCTAATAGCAGACTGCGCTTTCCTACATCATATAGAGTGGAAAGCATGTCCTTAGAGAATGTTGGACTTGTATAACCACTAACGAATATGTGTCGTCTCCTTACCCTAGAGCTTTCTCATTTGTTAAATTTTGTTTTTATGATTTTCCTTGCTGCAAGTAAGTTATTTTCTGATGATAGTTTGTGGTGCATAAACTGGGTGACTCGTAACAATCGTCTATGCTTTTGTTCATTTTTGTAAAATTAGAGTTCTTACAGTTGTGACTTGTGAAGACTTAAAAGTTTGTTTATTTTGCAGTGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATA-TTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCT</genome_strand>
        <mrna_strand>ATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333852" ref_strand="+" ref_description="SGN-E333852 [cTOD-24-G17]">
      <seq>ataatttcatttcttttgcttcttcttcttgttgttgttcttgccgttaatatatcaagaaatgtgaattttgtgatatgcgccatttgtgacttgaaatttattgggtggagagaaagattgaatctttttctctatttgataattgggtcaaagtgggttgctttcagattttgtaaaggagcaatggaaatggagaacattgagtgtgtttcaacaactgatgggattgaagatgaagagatccagttatcacataatcaattttcttctgcaaaacctcataatattctttttcccggacttgcccctactagtgtacatgaattgcttgaatgccccgtttgtaccaattctatgtatccaccaattcatcagtgtcacaatgggcacacactttgttctacctgcaaaacaagggtgcacaatcgatgtcctacatgtagacaagagcttggtgatataaggtgcttagctctggagaaagttgcagagtcacttgaactgccttgcaaatatttttccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70632" stop="73993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70932" g_stop="71309" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71310" i_stop="73541" i_length="2232">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73542" g_stop="73693" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="530" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E333852" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70932" e_stop="71309"/>
          <exon e_start="73542" e_stop="73693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAGGTAATTTTTCTTTTTGTTTGTTTGGGTTTTGTCCCTTTTCCTATTTGTGAGATTCGTTTGTTTTCGTTTTTTTCTATGTAAAGGTTGGGTTTTTATGTCTTCAATGTTAATTCTTTGCTGTTTTTTGTTGATGGAAAATGATGTTAAATGTGTTGGAAATGATATGTTGATCTTTCTATGTGCTATTTTTTCCTTTAAGTTAAAAGCTGATTTTGTTAGAATTTTCAAATGCTCTTTTGACTCTTTAGAAATATTGCAAACTTTAGATTGAGGTAAAGCATGATAATCGGGGTTGATAGTTTTGGTTGTGGTATGTTGAGGAAGTGGGGATGATGAAAGACTTTTTGGAGAATTTGATTAGGTTTTTATGAATTTCAGAATGTTTAAATATTTGATGATCAACTTGTAACAGCTTGAGTTTTCTAAAATGACTGCAGACTATTGGTTATGCTGTATACTTTTTGACTGCTGGTTGTTCGCCGAATGAAGGCCACTGAACTTAACTGTTTTGCAATTAACTTAGTAGTTGATTTTTTTTTCATGAATATGAAAGAGAGATGTTTGCTGCTTGTTGAATAAACATATCAGCCTTATGACTTTGTTCTTTAATTTGGATTCTTCCATGAGATGGATTAATGAGAAAGATCTTTTCAGCCCCTTGCACCCAAAGATGTGGGATAGCAGTCAATGAATTGGGTGAAAATGATGTGAGACCAGGGTTCAAATTTTAGCTGAGAAAATAAAAATTGCTTTGTGATTTCCTCTCGATCTAAATCTTGGAGGCAGAGTAACTTGATACTTCTGCTAGTGGACATGGTAGGTACACGGTGGAACAGTCTAAGAGAGCAGATAATAGGTCCAAACACCACCATTATGAAAAACGTACTCTTGTTAATGTATTAGTATAGCAGCTCTGTGGAGAGTTACGCTGTTGTAACATCTGCCAGCTGCGTAGATAGGTTATAGTCATATTCTGCTTATTAATGCTCTTGGAAGATCATTATCTTTGATTGAGATTTGTGCAGCCTTTTAGGCTTTTGCCATTTTAGCATTGTATACTAGTGTAGTCTTAGAAGAAGGTTGCATCAACTTGGTCCTATAGATGTTAACATATGTAGGATAGGGTTGTCTGGGAAAAGAAATGAGTCTTCTGTCGGGAAGGCACTCAATCTATGGCAAACCACATAACCCTTACTGCTTTCACCCCAGTCAATGGTAAATAAATAATTACATGAAATTCCTCCTCGCTGGACAGAAAATGAGAGACTTGAGAAGGTGGAAAAGAAACTGTTTGTGAAAGTTTTGATGTGTTTGTATAACTGCAATTTACAAAGTTAAATTATATTGTTTCACCCTGTTATTATGAGTAAATTTTCTTGGATAAGTTATAAATGCAAATGGTACTCTCGGTGAGAGTAATTCAGCTATGGTCTTCCAGGAAATATGGAATGCCACTAGGAATTGTATAAGCCGAAATTAGAAATACATCAGCATATATATAGGTATCGTCTTTCTAGTTTATTTATGGGAAGCCTGTAAGTTGGTATAATCTTTGAGTATATTTCAGGTGACTTCATTGCAATTTGACATCGCTTAATTCTAATTCACTAGGATTCTATGAGCAGATATAGGAACTCCTCAGCATATATAGTTGCTATATTTTTGTTTCATTTTTTTAAGCCTGTTGGTACAACCTGAGAGTATATTTCAGGCAACTTGATCGAAATTTACATTGCTTGTATCTTATATAATAAATGCATTAAGTTTGTTTTCTGTTGAGAACAAGTCGGAAACTTGTCATGCATAACCACAGTTGACTAAATATCTGCCGTGGTTGAATCCTAAGGAAGAAAGATGGTAGCATAGGGTAGAGTAGATTCGTAACTTGTCTACCAAATTATTATCAATTAGTAAAAGAAGGCTTTGGCGGCTAAATCTAATAGCAGACTGCGCTTTCCTACATCATATAGAGTGGAAAGCATGTCCTTAGAGAATGTTGGACTTGTATAACCACTAACGAATATGTGTCGTCTCCTTACCCTAGAGCTTTCTCATTTGTTAAATTTTGTTTTTATGATTTTCCTTGCTGCAAGTAAGTTATTTTCTGATGATAGTTTGTGGTGCATAAACTGGGTGACTCGTAACAATCGTCTATGCTTTTGTTCATTTTTGTAAAATTAGAGTTCTTACAGTTGTGACTTGTGAAGACTTAAAAGTTTGTTTATTTTGCAGTGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGG</genome_strand>
        <mrna_strand>ATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAAGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363767" ref_strand="+" ref_description="SGN-E363767 [cLPP-3-K14]">
      <seq>acactttgttctacctgcaaaacaagggtgcacaatagatgtccgacatgcagacaagagcttggtgatataaggtgtttagcgttagagaaggttgcagagtcacttgaactgccttgcaaatatttttctttggggtgcccagaaatattcccatattacagcaaacttaagcatgaaacattgtgcaattttagaccttacagttgcccatatgctgggtcagagtgctcagtgactggggacatcccttatttggttacacatttaagagatgaccacaaagtggatatgcacacgggatgcacgttcaaccatcgttatgtgaagtctaatcctcgtgaagtagaaaatgcaacatggatgttgacggtcttccattgttttgggcaatatttctgtctccattttgaggccttccagcttggcgtggcccctgtttatatggcatttttacgattcatgggtgatgaaacggatgcacgtaattacagctacagtctagaggtaggaggaaatggtagaaaactcatatgggagggtaccccaagaagtatccgagatagtcatcgcaaagtcagggacagtcatgacggtcttataatccagcgtaacatggcacttttcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73257" stop="75185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73557" g_stop="73928" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73929" i_stop="74625" i_length="697">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.189" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74626" g_stop="74885" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="632" r_length="260" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E363767" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73557" e_stop="73928"/>
          <exon e_start="74626" e_stop="74885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCCTTATTTGGTTTCACATTTAAGAGATGATCACAAAGTGGATATGCACACGGGGTGCACATTCAACCATCGTTACGTGAAATCAAATCCTCGAGAAGTAGAAAATGCCACATGGATGCTGACGGTAAGTCCATCAACTTTTTAATTTATTTTTTTGAGTTCAATAATGATGCTCAACATAGCATCATGATTCATGTGTTGTATGTTCCGTGCTATTTTGGTTTATGAAAGTTCAAGAATCCTTTTTATTCACCCTAACAATCAGGATGCTAAGAAATAGACCCGTAAAAGTTCTGTGGATGAATTATTGAAATGGCAGAATGTGGATAACCAAATTATAGCTTTGGGAAACCCTGTATTATCTTGTTCTCTGTTTCTGCAATATTTTCTCTCATGTTTTCTTTGATAGGTAGATCCCTTCCTAGAGACTCTGTTAAGGAATAGATTGGACAGTATAATATCATTCTGTTGAAGGTCACACGTCTCTCATTAATTGGATATTGAGTTTCTGAATATCGACGAAGGAAGAAAGACATCCTTATGATGGTCTTCAAATAAAGAAAAATGACATCCTTATGGTGATCTTCAAATTAAAAAAAATTGGCCTGCATGATGTCGACGAAGATGTACTGTGGCATTTTACTTTTATATTATGTACAAATACAAGATAGATAGGGATGAATTTCAAGGCACGACATGTTTTAATTTCTGCCTAGACATGTTGTGGTTGCCTGGATTCTGCATAATGTCATTTTCTCTATATCCATGTTGACGTATCCCCAGTTCATTCTCATTGACCAACCTTGTTACTCCTTTCTCAGGTCTTCCATTGTTTTGGACAGTATTTCTGTCTCCACTTTGAGGCCTTCCAGCTTGGCATGGCCCCTGTTTATATGGCATTTCTACGATTTATGGGTGATGAATCTGAGGCACGCAATTACAGTTATAGTCTCGAAGTAGGAGGAAATGGTAGAAAGCTCATATGGGAGGGAACACCAAGAAGTGTTCGAGATAGCCACCGCAAGGTCAGGGACAGTCATGATGGTCTAATAATCCAACGTAACATGGCACTTTTCTTTTC</genome_strand>
        <mrna_strand>ACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATAGATGTCCGACATGCAGACAAGAGCTTGGTGATATAAGGTGTTTAGCGTTAGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCTTTGGGGTGCCCAGAAATATTCCCATATTACAGCAAACTTAAGCATGAAACATTGTGCAATTTTAGACCTTACAGTTGCCCATATGCTGGGTCAGAGTGCTCAGTGACTGGGGACATCCCTTATTTGGTTACACATTTAAGAGATGACCACAAAGTGGATATGCACACGGGATGCACGTTCAACCATCGTTATGTGAAGTCTAATCCTCGTGAAGTAGAAAATGCAACATGGATGTTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCATTGTTTTGGGCAATATTTCTGTCTCCATTTTGAGGCCTTCCAGCTTGGCGTGGCCCCTGTTTATATGGCATTTTTACGATTCATGGGTGATGAAACGGATGCACGTAATTACAGCTACAGTCTAGAGGTAGGAGGAAATGGTAGAAAACTCATATGGGAGGGTACCCCAAGAAGTATCCGAGATAGTCATCGCAAAGTCAGGGACAGTCATGACGGTCTTATAATCCAGCGTAACATGGCACTTTTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362002" ref_strand="+" ref_description="SGN-E362002 [cLPP-11-L11]">
      <seq>acactttgttctacctgcaaaacaagggtgcacaatagatgtccgacatgcagacaagagcttggtgatataaggtgtttagcgttagagaaggttgcagagtcacttgaactgccttgcaaatatttttctttggggtgcccagaaatattcccatattacagcaaacttaagcatgaaacattgtgcaattttagaccttacagttgcccatatgctgggtcagagtgctcagtgactggggacatcccttatttggttacacatttaagagatgaccacaaagtggatatgcacacgggatgcacgttcaaccatcgttatgtgaagtctaatcctcgtgaagtagaaaatgcaacatggatgttgacggtcttccattgttttgggcaatatttctgtctccattttgaggccttccagcttggcgtggcccctgtttatatggcatttttacgattcatgggtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73257" stop="75027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73557" g_stop="73928" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73929" i_stop="74625" i_length="697">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.189" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74626" g_stop="74727" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="474" r_length="102" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E362002" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73557" e_stop="73928"/>
          <exon e_start="74626" e_stop="74727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCCTTATTTGGTTTCACATTTAAGAGATGATCACAAAGTGGATATGCACACGGGGTGCACATTCAACCATCGTTACGTGAAATCAAATCCTCGAGAAGTAGAAAATGCCACATGGATGCTGACGGTAAGTCCATCAACTTTTTAATTTATTTTTTTGAGTTCAATAATGATGCTCAACATAGCATCATGATTCATGTGTTGTATGTTCCGTGCTATTTTGGTTTATGAAAGTTCAAGAATCCTTTTTATTCACCCTAACAATCAGGATGCTAAGAAATAGACCCGTAAAAGTTCTGTGGATGAATTATTGAAATGGCAGAATGTGGATAACCAAATTATAGCTTTGGGAAACCCTGTATTATCTTGTTCTCTGTTTCTGCAATATTTTCTCTCATGTTTTCTTTGATAGGTAGATCCCTTCCTAGAGACTCTGTTAAGGAATAGATTGGACAGTATAATATCATTCTGTTGAAGGTCACACGTCTCTCATTAATTGGATATTGAGTTTCTGAATATCGACGAAGGAAGAAAGACATCCTTATGATGGTCTTCAAATAAAGAAAAATGACATCCTTATGGTGATCTTCAAATTAAAAAAAATTGGCCTGCATGATGTCGACGAAGATGTACTGTGGCATTTTACTTTTATATTATGTACAAATACAAGATAGATAGGGATGAATTTCAAGGCACGACATGTTTTAATTTCTGCCTAGACATGTTGTGGTTGCCTGGATTCTGCATAATGTCATTTTCTCTATATCCATGTTGACGTATCCCCAGTTCATTCTCATTGACCAACCTTGTTACTCCTTTCTCAGGTCTTCCATTGTTTTGGACAGTATTTCTGTCTCCACTTTGAGGCCTTCCAGCTTGGCATGGCCCCTGTTTATATGGCATTTCTACGATTTATGGGTGATGAA</genome_strand>
        <mrna_strand>ACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATAGATGTCCGACATGCAGACAAGAGCTTGGTGATATAAGGTGTTTAGCGTTAGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCTTTGGGGTGCCCAGAAATATTCCCATATTACAGCAAACTTAAGCATGAAACATTGTGCAATTTTAGACCTTACAGTTGCCCATATGCTGGGTCAGAGTGCTCAGTGACTGGGGACATCCCTTATTTGGTTACACATTTAAGAGATGACCACAAAGTGGATATGCACACGGGATGCACGTTCAACCATCGTTATGTGAAGTCTAATCCTCGTGAAGTAGAAAATGCAACATGGATGTTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCATTGTTTTGGGCAATATTTCTGTCTCCATTTTGAGGCCTTCCAGCTTGGCGTGGCCCCTGTTTATATGGCATTTTTACGATTCATGGGTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687610" ref_strand="-" ref_description="SGN-E687610 [T3_tus_79_B07]">
      <seq>gccccccccgaggtttttttttttttttttgtaagatggttattaacaattgatacaactaaatcttcagggacaatgatatgtagctgggcagagcatcaagtttcgagggtacaaacagattgatgtctgtctctttacacccactgtcacacgcacatacatccacaggaaaaaataggggagggaaaaggaaaaaaaagaaagaacaatcactctggagaaataaattagctacacagattcggtatgcacactccaccttctggattttgctgttctttccatatccttccagtgactcgaagttttagctcctttcgatcccctccagaaaagaaaagtgccatgttacgttggattattagaccatcatgactgtccctgaccttgcggtggctatctcgaacacttcttggtgttccctcccatatgagctttctaccatttcctcctacttcgagactataactgtccaatctattccttaacagagtctctaggaagggatctacctatcaaagaaaacatgagagaaaatattgcagaaacagagaacaagataatacagggtttcccaaagctataatttggttatccacattctgccatttcaataattcatccacagaacttttacgggtctatttcttagcatcctgattgttagggtgaataaaaaggattcttgaactttcataaaccaaaatagcacggaacatacaacacatgaatcatgatgctatgttgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="75490" stop="73676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75190" g_stop="74746" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="473" r_length="445" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74745" i_stop="74256" i_length="490">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74255" g_stop="73975" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="754" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="28" polyA_stop="13"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E687610" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687610" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75190" e_stop="74746"/>
          <exon e_start="74255" e_stop="73975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAAGATGGTTATTAACAATTGATACAACTAAATCTTCAGGGACAATGATATGTAGCTGGGCAGAGCATCAAGTTTCGAGGGTACAAACAGATTGATGTCTGTCTCTTTACACCCACTGTCACACGCACATACATCCACAGGAAAAAATAGGGGAGGGAAAAGGAAAAAAAAGAAAGAACAATCACTCTGGAGAAATAAATTAGCTACACAGATTCGGTATGCACACTCCACCTTCTGGATTTTGCTGTTCTTTCCATATCCTTCCAGTGACTCGAAGTTTTAGCTCCTTTCGATCCCCTCCAGAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCATGACTGTCCCTGACCTTGCGGTGGCTATCTCGAACACTTCTTGGTGTTCCCTCCCATATGAGCTTTCTACCATTTCCTCCTACTTCGAGACTATAACTGTAATTGCGTGCCTCAGATTCATCACCCATAAATCGTAGAAATGCCATATAAACAGGGGCCATGCCAAGCTGGAAGGCCTCAAAGTGGAGACAGAAATACTGTCCAAAACAATGGAAGACCTGAGAAAGGAGTAACAAGGTTGGTCAATGAGAATGAACTGGGGATACGTCAACATGGATATAGAGAAAATGACATTATGCAGAATCCAGGCAACCACAACATGTCTAGGCAGAAATTAAAACATGTCGTGCCTTGAAATTCATCCCTATCTATCTTGTATTTGTACATAATATAAAAGTAAAATGCCACAGTACATCTTCGTCGACATCATGCAGGCCAATTTTTTTTAATTTGAAGATCACCATAAGGATGTCATTTTTCTTTATTTGAAGACCATCATAAGGATGTCTTTCTTCCTTCGTCGATATTCAGAAACTCAATATCCAATTAATGAGAGACGTGTGACCTTCAACAGAATGATATTATACTGTCCAATCTATTCCTTAACAGAGTCTCTAGGAAGGGATCTACCTATCAAAGAAAACATGAGAGAAAATATTGCAGAAACAGAGAACAAGATAATACAGGGTTTCCCAAAGCTATAATTTGGTTATCCACATTCTGCCATTTCAATAATTCATCCACAGAACTTTTACGGGTCTATTTCTTAGCATCCTGATTGTTAGGGTGAATAAAAAGGATTCTTGAACTTTCATAAACCAAAATAGCACGGAACATACAACACATGAATCATGATGCTATGTTGAGCA</genome_strand>
        <mrna_strand>TTGTAAGATGGTTATTAACAATTGATACAACTAAATCTTCAGGGACAATGATATGTAGCTGGGCAGAGCATCAAGTTTCGAGGGTACAAACAGATTGATGTCTGTCTCTTTACACCCACTGTCACACGCACATACATCCACAGGAAAAAATAGGGGAGGGAAAAGGAAAAAAAAGAAAGAACAATCACTCTGGAGAAATAAATTAGCTACACAGATTCGGTATGCACACTCCACCTTCTGGATTTTGCTGTTCTTTCCATATCCTTCCAGTGACTCGAAGTTTTAGCTCCTTTCGATCCCCTCCAGAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCATGACTGTCCCTGACCTTGCGGTGGCTATCTCGAACACTTCTTGGTGTTCCCTCCCATATGAGCTTTCTACCATTTCCTCCTACTTCGAGACTATAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATCTATTCCTTAACAGAGTCTCTAGGAAGGGATCTACCTATCAAAGAAAACATGAGAGAAAATATTGCAGAAACAGAGAACAAGATAATACAGGGTTTCCCAAAGCTATAATTTGGTTATCCACATTCTGCCATTTCAATAATTCATCCACAGAACTTTTACGGGTCTATTTCTTAGCATCCTGATTGTTAGGGTGAATAAAAAGGATTCTTGAACTTTCATAAACCAAAATAGCACGGAACATACAACACATGAATCATGATGCTATGTTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322566" ref_strand="-" ref_description="SGN-E322566 [cTOB-26-F14]">
      <seq>cagaaaaaaatagggagggaaaaagaaaaaaaaagaaagaccaatcactctggagaaataaattagctacacagattcggtatgcacactccacctttctggatttgctgttctttccatatccttccagtgactcgaagttttagctcctttcgatcccctccaggaaaagaaaagtgccatgttacgttggattattagaccatcatgactgtccctgaccttgcggtggtatctcgaacacttcttggtgttccctcccatatgagctttctaccatntcctcctacttcgagactataactgtccaatctattccttaacagagtctctaggaagggatctacctatcaaagaaaacatgagagaaaatattgcagaaacagagaacaagataatacagggtttcccaaagctataatttggttatccacattctgccatttcaataattcatccacagaacttttacgggtttatttcttagcatcctgattgttagggtgaataaaaaggattcttgaactttcataaaccaaaatagcacggaacatacaacacatgaatcatgatgctatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="75350" stop="73678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75050" g_stop="74746" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74745" i_stop="74256" i_length="490">
            <donor d_prob="0.399" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74255" g_stop="73978" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="583" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E322566" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322566" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75050" e_stop="74746"/>
          <exon e_start="74255" e_stop="73978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAAAAATAGGGGAGGGAAAAGGAAAAAAAAGAAAGAACAATCACTCTGGAGAAATAAATTAGCTACACAGATTCGGTATGCACACTCCACC-TTCTGGATTTTGCTGTTCTTTCCATATCCTTCCAGTGACTCGAAGTTTTAGCTCCTTTCGATCCCCTCCA-GAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCATGACTGTCCCTGACCTTGCGGTGGCTATCTCGAACACTTCTTGGTGTTCCCTCCCATATGAGCTTTCTACCATTTCCTCCTACTTCGAGACTATAACTGTAATTGCGTGCCTCAGATTCATCACCCATAAATCGTAGAAATGCCATATAAACAGGGGCCATGCCAAGCTGGAAGGCCTCAAAGTGGAGACAGAAATACTGTCCAAAACAATGGAAGACCTGAGAAAGGAGTAACAAGGTTGGTCAATGAGAATGAACTGGGGATACGTCAACATGGATATAGAGAAAATGACATTATGCAGAATCCAGGCAACCACAACATGTCTAGGCAGAAATTAAAACATGTCGTGCCTTGAAATTCATCCCTATCTATCTTGTATTTGTACATAATATAAAAGTAAAATGCCACAGTACATCTTCGTCGACATCATGCAGGCCAATTTTTTTTAATTTGAAGATCACCATAAGGATGTCATTTTTCTTTATTTGAAGACCATCATAAGGATGTCTTTCTTCCTTCGTCGATATTCAGAAACTCAATATCCAATTAATGAGAGACGTGTGACCTTCAACAGAATGATATTATACTGTCCAATCTATTCCTTAACAGAGTCTCTAGGAAGGGATCTACCTATCAAAGAAAACATGAGAGAAAATATTGCAGAAACAGAGAACAAGATAATACAGGGTTTCCCAAAGCTATAATTTGGTTATCCACATTCTGCCATTTCAATAATTCATCCACAGAACTTTTACGGGTCTATTTCTTAGCATCCTGATTGTTAGGGTGAATAAAAAGGATTCTTGAACTTTCATAAACCAAAATAGCACGGAACATACAACACATGAATCATGATGCTATGTTGA</genome_strand>
        <mrna_strand>CAGAAAAAAATAGGGAGGGAAAAAGAAAAAAAAAGAAAGACCAATCACTCTGGAGAAATAAATTAGCTACACAGATTCGGTATGCACACTCCACCTTTCTGGA-TTTGCTGTTCTTTCCATATCCTTCCAGTGACTCGAAGTTTTAGCTCCTTTCGATCCCCTCCAGGAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCATGACTGTCCCTGACCTTGCGGTGG-TATCTCGAACACTTCTTGGTGTTCCCTCCCATATGAGCTTTCTACCATNTCCTCCTACTTCGAGACTATAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATCTATTCCTTAACAGAGTCTCTAGGAAGGGATCTACCTATCAAAGAAAACATGAGAGAAAATATTGCAGAAACAGAGAACAAGATAATACAGGGTTTCCCAAAGCTATAATTTGGTTATCCACATTCTGCCATTTCAATAATTCATCCACAGAACTTTTACGGGTTTATTTCTTAGCATCCTGATTGTTAGGGTGAATAAAAAGGATTCTTGAACTTTCATAAACCAAAATAGCACGGAACATACAACACATGAATCATGATGCTATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538836" ref_strand="+" ref_description="SGN-E538836 [TUS-58-E15](-)">
      <seq>gtttatgataggttggttgatggtttggtcaaagttggtaaagttgatgaagcaaaatcattttttgatctgatgatgggaaagctcaggatgaatgatgatagctacaagtttatgatgaacgcattgtttgatattgggcagcatgatgaggtgcttaagattgtggatagaatgttgagggaggatccagctgatttctctgatgagttgcaagagtttgttcgagaagccttggcgaaggaaggtagagatgaggagttgaccaaacttatggatgatattgaaagggagaagaaagaagctgctgacagggaggctgaagcagctgaaaaagcgaaggccagtgcaagagctgctgtttcctctttgataaatagtcctaaattgtttggaaataagcagcctgaagagcagtcaacaattactggtgaggctgccagcatcaacgacaatgacaaacaagaggaggtgagtgttcaagaaactgctgcggaggctagttcctctggtgagggtggagaagctgagagccttgttgctgcagaagctagaagtgatggtgcactttgatgaggtagcagaatgataaaatatgttgggtgacaactaatgagaaacagtagtaggtttcctttcactctgccacacttgcaagcacgaactatataatgctcttatgataaattactagtgggaaattgtttgtaatttagatggaaatgaaatgaaatgatttttttgatcatcttcaagtaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77338" stop="75979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77038" g_stop="76277" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76276" i_stop="76104" i_length="173">
            <donor d_prob="0.823" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76103" g_stop="76099" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="767" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E538836" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77038" e_stop="76277"/>
          <exon e_start="76103" e_stop="76099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGTAAATGGTGAGTAACAAATTGCAATGCAGCAATATATCTGGTCTAAATCTAACTCGTTTCATTTTTTGTTTCACTAGTACAGTAGTACTTAAGTTATTTTGTGAATGTACTACTGTGAGACCTGTATTATAGTGTTATTAATGTAGTTATATATATTTTTAATCAAAATATTCATGTAGTTGAA</genome_strand>
        <mrna_strand>GTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGTAAAAA.............................................................................................................................................................................GAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418106" ref_strand="+" ref_description="SGN-E418106 [STM-26-L12]">
      <seq>attgggtacgggctcccccctcgagttntttttacataagggggggaaaaaaattgaatttcctaataacgctataatacaggtctcacagtacattcacaaaataacttaggtactactgtactagtgaaacaagaaatgagacgagttagattacaccagagatattgctgcattgcaaattgttactcaccatttacttaaagatgatcaaaaaaatcatttcatttcatttccatctaaattacaaacaattttccgctagtaatttatcataagaggattatagttcgtgcttgcaagtgtggcagactgaaaagaaacctactattgtttctcattaacatattttatcattctgccacctgatcaaagtgcaccatcacttctagcttctgtagcaaccaggttctcagcttctgcaccctccccagtagaactagcctctgcagcagtttcttgaacactcacctcctcttgtttgtcatcatcattgatgctggcagcctcaccagcaattgttgactgctcttcaggctccttatttccaaacaatttaggactatttatcaaagaggaaacagcagctcttgcactggccttcgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="75843" stop="77007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76143" g_stop="76707" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="611" r_length="548" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E418106" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76143" e_stop="76707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAACACTATAATACAGGTCTCACAGTAGTACATTCACAAAATAACTTAAGTACTACTGTACTAGTGAAACAAAAAATGAAACGAGTTAGATTTAGACCAGATATATTGCTGCATTGCAATTTGTTACTCACCATTTACTTGAAGATGATCAAAAAAATCATTTCATTTCATTTCCATCTAAATTACAAACAATTTCCCACTAGTAATTTATCATAAGAGCATTATATAGTTCGTGCTTGCAAGTGTGGCAGAGTGAAAGGAAACCTACTACTGTTTCTCATTAGTTGTCACCCAACATATTTTATCATTCTGCTACCTCATCAAAGTGCACCATCACTTCTAGCTTCTGCAGCAACAAGGCTCTCAGCTTCTCCACCCTCACCAGAGGAACTAGCCTCCGCAGCAGTTTCTTGAACACTCACCTCCTCTTGTTTGTCATTGTCGTTGATGCTGGCAGCCTCACCAGTAATTGTTGACTGCTCTTCAGGCTGCTTATTTCCAAACAATTTAGGACTATTTATCAAAGAGGAAACAGCAGCTCTTGCACTGGCCTTCGCTTTTT</genome_strand>
        <mrna_strand>TAATAACGCTATAATACAGGTCTCAC---AGTACATTCACAAAATAACTTAGGTACTACTGTACTAGTGAAACAAGAAATGAGACGAGTTAGA-TTACACCAGAGATATTGCTGCATTGCAAATTGTTACTCACCATTTACTTAAAGATGATCAAAAAAATCATTTCATTTCATTTCCATCTAAATTACAAACAATTTTCCGCTAGTAATTTATCATAAGAGGA-T-TATAGTTCGTGCTTGCAAGTGTGGCAGACTGAAAAGAAACCTACTATTGTTTCTC---A--T-T-----AACATATTTTATCATTCTGCCACCTGATCAAAGTGCACCATCACTTCTAGCTTCTGTAGCAACCAGGTTCTCAGCTTCTGCACCCTCCCCAGTAGAACTAGCCTCTGCAGCAGTTTCTTGAACACTCACCTCCTCTTGTTTGTCATCATCATTGATGCTGGCAGCCTCACCAGCAATTGTTGACTGCTCTTCAGGCTCCTTATTTCCAAACAATTTAGGACTATTTATCAAAGAGGAAACAGCAGCTCTTGCACTGGCCTTCGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418105" ref_strand="+" ref_description="SGN-E418105 [STM-26-L12]">
      <seq>atagctacaagtttatgatgaatgcattgtttgatattgggcagcatgatgaggtgcttaagattgtggatagaatgttgagggaggatccagctgatttctctgatgagttgcaagagtttgttcgagaagccttggcgaaggaaggtagagatgaggagttgaccaagcttatggatgatatcgaaagggagaagaaagaagccgcagacagggaggttgaagcagccgaaaaagcgaaggccagtgcaagagctgctgtttcctctttgataaatagtcctaaattgtttggaaataaggagcctgaagagcagtcaacaattgctggtgaggctgccagcatcaatgatgatgacaaacaagaggaggtgagtgttcaagaaactgctgcagaggctagttctactggggagggtgcagaagctgagaacctggttgctacagaagctagaagtgatggtgcactttgatcaggtggcagaatgataaaatatgttaatgagaaacaatagtaggtttcttttcagtctgccacacttgcaagcacgaactataatcctcttatgataaattactagcggaaaattgtttgtaatttagatggaaatgaaatgaaatgatttttttgatcatctttaagtaaatggtgagtaacaatttgncatgcagcaatatctctggtgtaatctaactcgtctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77238" stop="75920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76938" g_stop="76220" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E418105" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76938" e_stop="76220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGTAAATGGTGAGTAACAAATTGCAATGCAGCAATATATCTGGTCTAAATCTAACTCGTTTCATT</genome_strand>
        <mrna_strand>ATAGCTACAAGTTTATGATGAATGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAGCTTATGGATGATATCGAAAGGGAGAAGAAAGAAGCCGCAGACAGGGAGGTTGAAGCAGCCGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGGAGCCTGAAGAGCAGTCAACAATTGCTGGTGAGGCTGCCAGCATCAATGATGATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCAGAGGCTAGTTCTACTGGGGAGGGTGCAGAAGCTGAGAACCTGGTTGCTACAGAAGCTAGAAGTGATGGTGCACTTTGATCAGGTGGCAGAATGATAAAATA---T--GT------TAATGAGAAACAATAGTAGGTTTCTTTTCAGTCTGCCACACTTGCAAGCACGAAC--TATAATCCTCTTATGATAAATTACTAGCGGAAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTTAAGTAAATGGTGAGTAACAATTTGNCATGCAGCAATATCTCTGGTGT-AATCTAACTCGTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715237" ref_strand="+" ref_description="SGN-E715237 [FB13CH07]">
      <seq>gatgaggagttgaccaaacttatggatgatattgaaagggagaagaaagaagctgctgacagggaggctgaagcagctgaaaaagcgaaggccagtgcaagagctgctgtttcctctttgataaatagtcctaaattgtttggaaataagcagcctgaagagcagtcaacaattactggtgaggctgccagcatcaacgacaatgacaaacaagaggaggtgagtgttcaagaaactgctgcggaggctagttcctctggtgagggtggagaagctgagagccttgttgctgcagaagctagaagtgatggtgcactttgatgaggtagcagaatgataaaatatgttgggtgacaactaatgagaaacagtagtaggtttcctttcactctgccacacttgcaagcacgaactatataatgctcttatgataaattactagtgggaaattgtttgtaatttagatggaaatgaaatgaaatgatttttttgatcatcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77086" stop="75979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76786" g_stop="76277" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E715237" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76786" e_stop="76277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGTAAATG</genome_strand>
        <mrna_strand>GATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715238" ref_strand="+" ref_description="SGN-E715238 [FB13CH08]">
      <seq>gatgaggagttgaccaaacttatggatgatattgaaagggagaagaaagaagctgctgacagggaggctgaagcagctgaaaaagcgaaggccagtgcaagagctgctgtttcctctttgataaatagtcctaaattgtttggaaataagcagcctgaagagcagtcaacaattactggtgaggctgccagcatcaacgacaatgacaaacaagaggaggtgagtgttcaagaaactgctgcggaggctagttcctctggtgagggtggagaagctgagagccttgttgctgcagaagctagaagtgatggtgcactttgatgaggtagcagaatgataaaatatgttgggtgacaactaatgagaaacagtagtaggtttcctttcactctgccacacttgcaagcacgaactatataatgctcttatgataaattactagtgggaaattgtttgtaatttagatggaaatgaaatgaaatgatttttttgatcatcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77086" stop="75979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76786" g_stop="76277" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E715238" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76786" e_stop="76277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGTAAATG</genome_strand>
        <mrna_strand>GATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310483" ref_strand="+" ref_description="SGN-E310483 [cTOA-9-C21]">
      <seq>atctaaattacaaactatttcccactagtaatttatcataagagcattatatagttcgtgcttgcaagtgtggcagagtgaaaggaaacctactactgtttctcattagttgtcacccaacatattttatcattctgctacctcatcaaagtgcaccatcacttctagcttctgcagcaacaaggctctcagcttctccaccctcaccagaggaactagcctccgcagcagtttcttgaacactcacctcctcttgtatgtcattgacgttgatgctggcagcctcaccagtaattgatgactgctcttcaggctgcttatttgcaaacaatgcaggactatttatcaaagaggaaacagcagctcttgcactggccttcgctttttcagctgcttcagcctccctgtcagcagcttctttcttctgcctttgaatatcatccataagtttggtcaactcctcatctataccttccttcgtcaaggcttctcgaacaaactcttgcaactcatcagagaaatcagctggatcctccctcaacattctatccacaatcttaagcaccttattatgctgcccaatatcaaacaatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76021" stop="77216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76321" g_stop="76916" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E310483" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76321" e_stop="76916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAATTACAAACAATTTCCCACTAGTAATTTATCATAAGAGCATTATATAGTTCGTGCTTGCAAGTGTGGCAGAGTGAAAGGAAACCTACTACTGTTTCTCATTAGTTGTCACCCAACATATTTTATCATTCTGCTACCTCATCAAAGTGCACCATCACTTCTAGCTTCTGCAGCAACAAGGCTCTCAGCTTCTCCACCCTCACCAGAGGAACTAGCCTCCGCAGCAGTTTCTTGAACACTCACCTCCTCTTGTTTGTCATTGTCGTTGATGCTGGCAGCCTCACCAGTAATTGTTGACTGCTCTTCAGGCTGCTTATTTCCAAACAATTTAGGACTATTTATCAAAGAGGAAACAGCAGCTCTTGCACTGGCCTTCGCTTTTTCAGCTGCTTCAGCCTCCCTGTCAGCAGCTTCTTTCTTCTCCCTTTCAATATCATCCATAAGTTTGGTCAACTCCTCATCTCTACCTTCCTTCGCCAAGGCTTCTCGAACAAACTCTTGCAACTCATCAGAGAAATCAGCTGGATCCTCCCTCAACATTCTATCCACAATCTTAAGCACCTCATCATGCTGCCCAATATCAAACAATGCG</genome_strand>
        <mrna_strand>ATCTAAATTACAAACTATTTCCCACTAGTAATTTATCATAAGAGCATTATATAGTTCGTGCTTGCAAGTGTGGCAGAGTGAAAGGAAACCTACTACTGTTTCTCATTAGTTGTCACCCAACATATTTTATCATTCTGCTACCTCATCAAAGTGCACCATCACTTCTAGCTTCTGCAGCAACAAGGCTCTCAGCTTCTCCACCCTCACCAGAGGAACTAGCCTCCGCAGCAGTTTCTTGAACACTCACCTCCTCTTGTATGTCATTGACGTTGATGCTGGCAGCCTCACCAGTAATTGATGACTGCTCTTCAGGCTGCTTATTTGCAAACAATGCAGGACTATTTATCAAAGAGGAAACAGCAGCTCTTGCACTGGCCTTCGCTTTTTCAGCTGCTTCAGCCTCCCTGTCAGCAGCTTCTTTCTTCTGCCTTTGAATATCATCCATAAGTTTGGTCAACTCCTCATCTATACCTTCCTTCGTCAAGGCTTCTCGAACAAACTCTTGCAACTCATCAGAGAAATCAGCTGGATCCTCCCTCAACATTCTATCCACAATCTTAAGCACCTTATTATGCTGCCCAATATCAAACAATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440906" ref_strand="+" ref_description="SGN-E440906 [cSTA-28-O14]">
      <seq>atagctacaagtttatgatgaatgcattgtttgatattgggcagcatgatgaggtgcttaagattgtggatagaatgttgagggaggatccagctgatttctctgatgagttgcaagagtttgttcgagaagccttggcgaaggaaggtagagatgaggagttgaccaagcttatggatgatatcgaaagggagaagaaagaagccgcagacagggaggttgaagcagccgaaaaagcgaaggccagtgcaagagctgctgtttcctctttgataaatagtcctaaattgtttggaaataaggagcctgaagagcagtcaacaattgctggtgaggctgccagcatcaatgatgatgacaaacaagaggaggtgagtgttcaagaaactgctgcagaggctagttctactggggagggtgcagaagctgagaacctggttgctacagaagctagaagtgatggtgcactttgatcaggtggcagaatgataaaatatgttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77238" stop="76139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76938" g_stop="76439" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E440906" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76938" e_stop="76439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTT</genome_strand>
        <mrna_strand>ATAGCTACAAGTTTATGATGAATGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAGCTTATGGATGATATCGAAAGGGAGAAGAAAGAAGCCGCAGACAGGGAGGTTGAAGCAGCCGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGGAGCCTGAAGAGCAGTCAACAATTGCTGGTGAGGCTGCCAGCATCAATGATGATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCAGAGGCTAGTTCTACTGGGGAGGGTGCAGAAGCTGAGAACCTGGTTGCTACAGAAGCTAGAAGTGATGGTGCACTTTGATCAGGTGGCAGAATGATAAAATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279825" ref_strand="+" ref_description="SGN-E279825 [cLER-8-D5]">
      <seq>tgatattgggcagcatgatgaggtgcttaagattgtggatagaatgttgagggaggatccagctgatttctctgatgagttgcaagagtttgttcgagaagccttggcgaaggaaggtagagatgaggagttgaccaaacttatggatgatattgaaagggagaagaaagaagctgctgacagggaggctgaagcagctgaaaaagcgaaggccagtgcaagagctgctgtttcctctttgataaatagtcctaaattgtttggaaataagcagcctgaagagcagtcaacaattactggtgaggctgccagcatcaacgacaatgacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77207" stop="76275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76907" g_stop="76575" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E279825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76907" e_stop="76575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACA</genome_strand>
        <mrna_strand>TGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548122" ref_strand="+" ref_description="SGN-E548122 [TUS-58-E15]">
      <seq>ggaaggttcaaagacgcaatcaatgtttttaacagcatgggagagaagaggtgtagaccagacacattgtcttacaataatctgattgagcagttgtgcaaaaatgacttgttgggtgaggctgaggagctctataaggatatgggcgaaaaaggggtcagccctgatgagttcacgtttgttttgttgatggatacttgctttaaagaaagtaggcctgatgacgctgctgcgtattttaagaccatggtggagtctaaattgaggcctaatcttggagtttatgataggttggttgatggtttggtcaaagttggtaaagttgatgaagcaaaatcattttttgatctgatgatgggaaagctcaggatgaatgatgatagctacaagtttatgatgaacgcattgtttgatattgggcagcatgatgaggtgcttaagattgtggatagaatgttgagggaggatccagctgatttctctgatgagttgcaagagtttgttcgagaagccttggcgaaggaaggtagagatgaggagttgaccaaacttatggatgatattgaaagggagaagaaagaagctgctgacagggaggctgaagcagctgaaaaagcgaaggccagtgcaagagctgctgtttcctctttgataatagtcctaaattgtttggaaataagcagcctgaagagcagtcaacaattactgggtgagctgccagcatcaacgacaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77617" stop="76280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77317" g_stop="76580" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E548122" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77317" e_stop="76580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGAC</genome_strand>
        <mrna_strand>GGAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGAT-AATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGGTGAGCTGCCAGCATCAACGACAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276196" ref_strand="+" ref_description="SGN-E276196 [cLEN-21-O16]">
      <seq>gaaggttcaaagacgcaatcaatgtttttaacagcatgggagagaagaggtgtagaccagacacattgtcttacaataatctgattgagcagttgtgcaaaaatgacttgttgggtgaggctgaggagctctataaggatatgggcgaaaaaggggtcagccctgatgagttcacgtttgttttgttgatggatacttgctttaaagaaagtaggcctgatgacgctgctgcgtattttaagaccatggtggagtctaaattgaggcctaatcttggagtttatgataggttggttgatggtttggtcaaagttggtaaagttgatgaagcaaaatcattttttgatctgatgatgggaaagctcaggatgaatgatgatagctacaagtttatgatgaacgcattgtttgatattgggcagcatgatgaggtgcttaagattgtggatagaatgttgagggaggatccagctgatttctctgatgagttgcaagagtttgttcgagaagccttggcgaaggaaggtagagatgaggagttgaccaaacttatggatgatattgaaagggagaagaaagaagctgctgacagggaggctgaagcagctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77616" stop="76404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77316" g_stop="76704" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E276196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77316" e_stop="76704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAA</genome_strand>
        <mrna_strand>GAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79381" stop="78486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79081" g_stop="78760" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79081" e_stop="78760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGT-TAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTATTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79381" stop="78486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79081" g_stop="78777" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79081" e_stop="78777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGT-TAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTATTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221424" ref_strand="+" ref_description="SGN-E221424 [cLEL-10-D13](-)">
      <seq>gcagccaataaacaatgccctgaccatgggtgcaatcacctttttgtttcccattggtttctccttcttactaagtatatttgtctaccttgaaggtagtaactggccaaacaatctaatgatgagaaatccaatttggtccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84840" stop="48046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84541" g_stop="84400" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84399" i_stop="81301" i_length="3099">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81300" g_stop="81293" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="151" r_length="8" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81292" i_stop="80734" i_length="559">
            <donor d_prob="0.654" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80733" g_stop="80719" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="166" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80718" i_stop="79558" i_length="1161">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.382" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79557" g_stop="79538" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="186" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E221424" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84541" e_stop="84400"/>
          <exon e_start="81300" e_stop="81293"/>
          <exon e_start="80733" e_stop="80719"/>
          <exon e_start="79557" e_stop="79538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCC-TCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGATTATCCTTATTGAAAGATTCAAGTTGGAGAAAGTTGTGTTCTTGAAACAGCATACTGTTAGGTGAGGAAGTACAAAAATACTGTTTTAGTCTTATCGATCTATTGGTTTCTTGGCAATTAAAGTTTTGGAGTAAACCGGATGTAACATTTTCAAATAGATTTATACTAGGGTAGGGGCAGACTTTTCATAGCAACCTAAAATAAAACCTGCAATTTCCAATTGAGTATTTAATTCCTTTTGAAGTCAACAAAGTAAAAGAACAACAGAGAGAGTTTTCCGATGCTAGGTTTAATAGTTTCAACCTAATCTTAAAAACTGAAAATCATCTGCAGAACTAATGTCTTCTGGATTATCATTTTGGTAGGGAGGGAAGAGGTCTTCCTTCATATGCACCGCGAATTTAATGGGACTTCACGTACTCTTGGACAATATGCAGACCCTCAGTCTCTTCTCCGTAATCCTGCAAAACGATCACAAGATCAGCTATCATCTCTTTTCATAACTTACCAGGTTCTATTCATATTTCAGCATTTTCAAGAGATATTTTCCTATAATTGCGGGAAGATATAACCAAATTATAGAAAGAGATTATGATACGCAGCAGTTCATGGATTATACCTTCACAACAACACAGCCACAGCCGACCACCTTCCTTGCTTTCCCTTCAGAATCAATCTTACACAACTGTAAACAGACCCCAAAAATAAGAATTTAAAAAAGAAAAAGTTTGTACTCCAATGATGAAAATGCAAATCAAGAGAGTCACGAAGTAAATAGTTATCATCAACTTCCTTAAAAGGACAAATAGGTCTATTATTTTAATAACTGACAAAACCCCGGACTAATAGCAAAGTTCGAAACTCAGTGAATAACAAGCTTTTGTCTCCGCAAGGCATGTGCTTAACCCAGACAATATCACGTGTTGTGGTCGTACAACTAGACCATCAGTAGGTTTACTGGTTAGGCACAACCTTCATAACACACTTTCCAGGTCATTTTCGAAATCAGAAGGTAAGAGTGGCAGACAGTAAAACTGGGAGAGCCTTGGAGCTAAAAAGTAGCAACCACAAATAAACTTACACCAGCCCATTCGCCAAGAGTTTTTGCATTCGGAACCGTAATCAAACTGACATTGTGATCAGCACAGAGCGCTTTGACCAATTTGACATAATCTGGCTGGTCACAGTCCTCTGCTAACACACAAAGCTGTGCAGCATGCTTCTCAATCACCTTTGCACCTTCATGTAGTCCCCGAGAGAGGCCTCCATGAGCCTTAGACTTCCTCAGCACCAGCTGCAAAGCAGTCATGATGTCCATGGGCTCTCCAAGTGATGGAGCAGGAGCCTCGGCAACAGCAACAGCAACATCCTCTCTACAGTCAAAGGAAATATTAAGCAGAGAACCCTCGGGGAAAAGTTTAAGGTAGTAAAAAACTAAAAGAACATAATTAATTAAGCACAGATCAGTATCAAATGTGGCATGAATAATGGAAAACTGAAAAACAAAGTCCAGTTTTCACTCTTTTCAGCAAAGGCAAACTGAAAGGGATATCCCCAACCATTAAGGCCACATTCGATGAAACTTGAGAGACAGCTTAACTTCGGATACCGAGTCCAATCAATGGTTTGCCAGGGAATAGAAATACCCCCATTGATTTGAACTTCCAAGACAGAAGCTGATTCTCAAAATTTTGAACTAATCTAAAATGTTTATATGATGTGTAAAATGTCTGATACCAGATGAGAACTGTTATCAATGGCTCACTGTATAATTTTCTGGAAACAAGGAACAGAGTACTGCTCCATATAAACTAAAGCCATCGTGGTGAGACATTCTATTTCCTGTTTAAATTTTACATCCACTTCATAAAAAGATGGAGAGCAATCTCATGACATTCATGTAAAACCAAGAAGGAGACTGATAAAGAGATGATACAGAAGGATGGGAAAGAGGAAGGAGATCAAGAAGGGCAAAGGACAAAGAAACAAAAGAGTTTCCCAGAGAATTGATGACCATCTCAAGTCACTATCAATATGTGATAGGTTCCTACACTGGGAATTTTCCATTTGTTCACTGAAAAAGGACCTCACTCTTCATCTTACATACTTCAACAAATAAAACATTTCACCAAACTCGCTACTTTGCCATAAAAATGAAACCCCTAAAATCAGTCCATTTTCTCTAAGATAAATATTGTGAAGAATAACACTCTTGTCTATCCACATCACTGATCATTCATTTCAGGGTCGACCTATGAATATAAGACTTTCTATATCTTACACTTCTGTATTTGGGGGTAGCGATCGCATGTTTTTGGCTTTTCGTAAGCGTTATCAGGCAAGTGGTATTTAGTTCTGCTTCAAGCAATTAACTAGCAAAGCAGCAAAGTCCTACATGGTTCTGCTAAATGGGTTCTTGTGATGCTCTTATAGGAACATCTACTAAGTAATAAGGTCAACACTCTTTTTCTTGTTTCCTGAAATTTCAAAACATGACACGATCGTACAAAGTCTTGTGTACTACAATCAATCAACTATCCCAATATATCGATTCCACTATACTTAGACCCAGATAGTTCTAATACTCAATAATTTGTAACGAACTCCCTGAAAGAAGCGATTCACTAAACAGCACACTTATTCCCTACATTGGCATACAAATCTATAACCAAACTAATGGCTCCTCGCAAACATAGGAATGTAATTGTAAATGAATAGTTCAAATAGCACTCAAATAACAACAGACTACTACACACACAAACATAATCACACACCAAGTTGCAAAAACTACTGGTAAAGCTGATCAAGATACTGGTCTCCAGCTCATTACAACCGAAAACGACATCGACAGCAACACTTACAGTCAAGTAAACAAACTGAATTTGACAATAAAATTAACTGAATTCTACTTACCCCGACATTTTTCCAGCAATATTGGTATACCAAAAACTCTGCTACCTGTTCCTCTCAAAAGTAAAACACGGAATTTAGTTAGGTAAATAGAATCAACAATAGACTCCATAAACCCTCATCCCAAATATACCGTGCATATGCAGATCCCACATTTGGGTACCAAATACAACTAATTTATACAAAGACTACATCTTTAATACATATATTTCATAAAATCTTAATACTGAATATATTAAGTTCAATCAAAACATGATAAATGTGCATCAATCAAAGTATGAAAATACCCAATAAAATATTATGCAATAAGTAACAAAGAATTATATCAAACATGAATCTTGAAGTATAAAGATTGTTCCTTTTTGCCAAAATCAAGTAATGGTGAAAAGGGGTCACCTCAAAAAAATGTAGATGTCAAGAATTTTAGTTTGAGTGAATGAGGCAAGATGATGATTTATATGAACCCTAAAATAGTGGCAGTTTAATTACTGTACTACCCTTTTTCTTGATTTTATTTTTTTCATAATTTTTTTTTTTGGTTTAGGTACTAATTAACTCTTTGATCCCCTAGTTTTGGTTGAAATTTAAAAAAAAAATAAAAATACCCTTTTAAAGTATTTGGAGTTTAAAATAAAATAAAATTATATTTAGATATGAATTGTTTCTTTTGGAATTAAAGTTGAATGGTATAATAGGTTACCTTTCTAATTTATTTATTTTTAATTGTATTAGTCCTTTAATAATATTATTTCCCAACATTATTAAAGTATTTGTTAAATAACATTTGGTATGTTGTGTTAGGTACAATTTTTAAATATCAACAAAATTACTGGACTCTACATTATAAAAAAAAAAAGTTACAGAAGAAAGAAAGTGAGAACTGATTCTCTAATAGAGAGGTTCTACTATGCCTCAAAATTTAAGGGCCTCATTTTTAATAGGTTATAAGTTATTATTTTTTAACAAATATTGAATACTATTGTAGAAAAAATAAACTTTTCATGAGAATTAAGGAATTATTAAAAGAAATTTGTCATATTTGGAGTACTATATCTCATGAAAAAATAGTTTAAAATATGAATGATTATATGATTAATTGAAAATTAGAAGAAATCAATTATACAAAAGTTACGGAAAAGGGTCATATTTGCCCTTGTACTCTTAGAAAAGGGTCACATTTATCCTTTATCATAATTTTTTTAATATATTTGCCCTTACCATTCAACTTTAGACACATATTTGCCTTTGTACAGTTTAGTATTGTATCACCATTTTTATTAATCTATGTGGCGCCAACGTGACTCTATGTGCATATATTTTATTATATTATAATTTTATTTTTTATTTAGTGAATTTTATTTTAAAAAATAGGTCGGATAGTTTACTATATAGAAAAAAATTAATTATAATAAAATATATGCACATGGAGTCACGTAAACGCCACATAGATTAATAAAAATGGTGATATACTACTAAATTGTACAAGGCAAATATGTGCTTAAAGTTGGATGATAAGGATATAAAAAAAAATGACGAAGGATAAATATGATCCTTTTCTAAATGTACAAGGACAAATATGAGCCTTTTCTGTAAAAGTTATTAATATTTCAAGTTTAAGATCTCATTTTATTTTTGCTTTAGGCCACTAATATGTTCAAATCGCTTCCGTTTAAATTTATAATAATCATCTCTCAAATTAAGTGGAAAAGGCAAATCTTTGCCCATTATTCGAACTTATGACTACGTCAAAACTTACTGTCAGATTAAAAAAAAAAAGAAAAT</genome_strand>
        <mrna_strand>GCAGCCAATAAACAATGCCCTGACCATGGGTGCAATCACCTTTTTGTTTCCCATTGGTTTCTCCTTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGCCAAACAATCTAATGATGAGAAATCCAATTTGGTCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712528" ref_strand="+" ref_description="SGN-E712528 [FB05AD09]">
      <seq>aggggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaggtaccaattttactgctanaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="85678" stop="48055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85381" g_stop="85312" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84776" g_stop="84285" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="562" r_length="492" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84284" i_stop="79558" i_length="4727">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.382" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79557" g_stop="79539" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="581" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E712528" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85381" e_stop="85312"/>
          <exon e_start="84776" e_stop="84285"/>
          <exon e_start="79557" e_stop="79539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGATTATCCTTATTGAAAGATTCAAGTTGGAGAAAGTTGTGTTCTTGAAACAGCATACTGTTAGGTGAGGAAGTACAAAAATACTGTTTTAGTCTTATCGATCTATTGGTTTCTTGGCAATTAAAGTTTTGGAGTAAACCGGATGTAACATTTTCAAATAGATTTATACTAGGGTAGGGGCAGACTTTTCATAGCAACCTAAAATAAAACCTGCAATTTCCAATTGAGTATTTAATTCCTTTTGAAGTCAACAAAGTAAAAGAACAACAGAGAGAGTTTTCCGATGCTAGGTTTAATAGTTTCAACCTAATCTTAAAAACTGAAAATCATCTGCAGAACTAATGTCTTCTGGATTATCATTTTGGTAGGGAGGGAAGAGGTCTTCCTTCATATGCACCGCGAATTTAATGGGACTTCACGTACTCTTGGACAATATGCAGACCCTCAGTCTCTTCTCCGTAATCCTGCAAAACGATCACAAGATCAGCTATCATCTCTTTTCATAACTTACCAGGTTCTATTCATATTTCAGCATTTTCAAGAGATATTTTCCTATAATTGCGGGAAGATATAACCAAATTATAGAAAGAGATTATGATACGCAGCAGTTCATGGATTATACCTTCACAACAACACAGCCACAGCCGACCACCTTCCTTGCTTTCCCTTCAGAATCAATCTTACACAACTGTAAACAGACCCCAAAAATAAGAATTTAAAAAAGAAAAAGTTTGTACTCCAATGATGAAAATGCAAATCAAGAGAGTCACGAAGTAAATAGTTATCATCAACTTCCTTAAAAGGACAAATAGGTCTATTATTTTAATAACTGACAAAACCCCGGACTAATAGCAAAGTTCGAAACTCAGTGAATAACAAGCTTTTGTCTCCGCAAGGCATGTGCTTAACCCAGACAATATCACGTGTTGTGGTCGTACAACTAGACCATCAGTAGGTTTACTGGTTAGGCACAACCTTCATAACACACTTTCCAGGTCATTTTCGAAATCAGAAGGTAAGAGTGGCAGACAGTAAAACTGGGAGAGCCTTGGAGCTAAAAAGTAGCAACCACAAATAAACTTACACCAGCCCATTCGCCAAGAGTTTTTGCATTCGGAACCGTAATCAAACTGACATTGTGATCAGCACAGAGCGCTTTGACCAATTTGACATAATCTGGCTGGTCACAGTCCTCTGCTAACACACAAAGCTGTGCAGCATGCTTCTCAATCACCTTTGCACCTTCATGTAGTCCCCGAGAGAGGCCTCCATGAGCCTTAGACTTCCTCAGCACCAGCTGCAAAGCAGTCATGATGTCCATGGGCTCTCCAAGTGATGGAGCAGGAGCCTCGGCAACAGCAACAGCAACATCCTCTCTACAGTCAAAGGAAATATTAAGCAGAGAACCCTCGGGGAAAAGTTTAAGGTAGTAAAAAACTAAAAGAACATAATTAATTAAGCACAGATCAGTATCAAATGTGGCATGAATAATGGAAAACTGAAAAACAAAGTCCAGTTTTCACTCTTTTCAGCAAAGGCAAACTGAAAGGGATATCCCCAACCATTAAGGCCACATTCGATGAAACTTGAGAGACAGCTTAACTTCGGATACCGAGTCCAATCAATGGTTTGCCAGGGAATAGAAATACCCCCATTGATTTGAACTTCCAAGACAGAAGCTGATTCTCAAAATTTTGAACTAATCTAAAATGTTTATATGATGTGTAAAATGTCTGATACCAGATGAGAACTGTTATCAATGGCTCACTGTATAATTTTCTGGAAACAAGGAACAGAGTACTGCTCCATATAAACTAAAGCCATCGTGGTGAGACATTCTATTTCCTGTTTAAATTTTACATCCACTTCATAAAAAGATGGAGAGCAATCTCATGACATTCATGTAAAACCAAGAAGGAGACTGATAAAGAGATGATACAGAAGGATGGGAAAGAGGAAGGAGATCAAGAAGGGCAAAGGACAAAGAAACAAAAGAGTTTCCCAGAGAATTGATGACCATCTCAAGTCACTATCAATATGTGATAGGTTCCTACACTGGGAATTTTCCATTTGTTCACTGAAAAAGGACCTCACTCTTCATCTTACATACTTCAACAAATAAAACATTTCACCAAACTCGCTACTTTGCCATAAAAATGAAACCCCTAAAATCAGTCCATTTTCTCTAAGATAAATATTGTGAAGAATAACACTCTTGTCTATCCACATCACTGATCATTCATTTCAGGGTCGACCTATGAATATAAGACTTTCTATATCTTACACTTCTGTATTTGGGGGTAGCGATCGCATGTTTTTGGCTTTTCGTAAGCGTTATCAGGCAAGTGGTATTTAGTTCTGCTTCAAGCAATTAACTAGCAAAGCAGCAAAGTCCTACATGGTTCTGCTAAATGGGTTCTTGTGATGCTCTTATAGGAACATCTACTAAGTAATAAGGTCAACACTCTTTTTCTTGTTTCCTGAAATTTCAAAACATGACACGATCGTACAAAGTCTTGTGTACTACAATCAATCAACTATCCCAATATATCGATTCCACTATACTTAGACCCAGATAGTTCTAATACTCAATAATTTGTAACGAACTCCCTGAAAGAAGCGATTCACTAAACAGCACACTTATTCCCTACATTGGCATACAAATCTATAACCAAACTAATGGCTCCTCGCAAACATAGGAATGTAATTGTAAATGAATAGTTCAAATAGCACTCAAATAACAACAGACTACTACACACACAAACATAATCACACACCAAGTTGCAAAAACTACTGGTAAAGCTGATCAAGATACTGGTCTCCAGCTCATTACAACCGAAAACGACATCGACAGCAACACTTACAGTCAAGTAAACAAACTGAATTTGACAATAAAATTAACTGAATTCTACTTACCCCGACATTTTTCCAGCAATATTGGTATACCAAAAACTCTGCTACCTGTTCCTCTCAAAAGTAAAACACGGAATTTAGTTAGGTAAATAGAATCAACAATAGACTCCATAAACCCTCATCCCAAATATACCGTGCATATGCAGATCCCACATTTGGGTACCAAATACAACTAATTTATACAAAGACTACATCTTTAATACATATATTTCATAAAATCTTAATACTGAATATATTAAGTTCAATCAAAACATGATAAATGTGCATCAATCAAAGTATGAAAATACCCAATAAAATATTATGCAATAAGTAACAAAGAATTATATCAAACATGAATCTTGAAGTATAAAGATTGTTCCTTTTTGCCAAAATCAAGTAATGGTGAAAAGGGGTCACCTCAAAAAAATGTAGATGTCAAGAATTTTAGTTTGAGTGAATGAGGCAAGATGATGATTTATATGAACCCTAAAATAGTGGCAGTTTAATTACTGTACTACCCTTTTTCTTGATTTTATTTTTTTCATAATTTTTTTTTTTGGTTTAGGTACTAATTAACTCTTTGATCCCCTAGTTTTGGTTGAAATTTAAAAAAAAAATAAAAATACCCTTTTAAAGTATTTGGAGTTTAAAATAAAATAAAATTATATTTAGATATGAATTGTTTCTTTTGGAATTAAAGTTGAATGGTATAATAGGTTACCTTTCTAATTTATTTATTTTTAATTGTATTAGTCCTTTAATAATATTATTTCCCAACATTATTAAAGTATTTGTTAAATAACATTTGGTATGTTGTGTTAGGTACAATTTTTAAATATCAACAAAATTACTGGACTCTACATTATAAAAAAAAAAAGTTACAGAAGAAAGAAAGTGAGAACTGATTCTCTAATAGAGAGGTTCTACTATGCCTCAAAATTTAAGGGCCTCATTTTTAATAGGTTATAAGTTATTATTTTTTAACAAATATTGAATACTATTGTAGAAAAAATAAACTTTTCATGAGAATTAAGGAATTATTAAAAGAAATTTGTCATATTTGGAGTACTATATCTCATGAAAAAATAGTTTAAAATATGAATGATTATATGATTAATTGAAAATTAGAAGAAATCAATTATACAAAAGTTACGGAAAAGGGTCATATTTGCCCTTGTACTCTTAGAAAAGGGTCACATTTATCCTTTATCATAATTTTTTTAATATATTTGCCCTTACCATTCAACTTTAGACACATATTTGCCTTTGTACAGTTTAGTATTGTATCACCATTTTTATTAATCTATGTGGCGCCAACGTGACTCTATGTGCATATATTTTATTATATTATAATTTTATTTTTTATTTAGTGAATTTTATTTTAAAAAATAGGTCGGATAGTTTACTATATAGAAAAAAATTAATTATAATAAAATATATGCACATGGAGTCACGTAAACGCCACATAGATTAATAAAAATGGTGATATACTACTAAATTGTACAAGGCAAATATGTGCTTAAAGTTGGATGATAAGGATATAAAAAAAAATGACGAAGGATAAATATGATCCTTTTCTAAATGTACAAGGACAAATATGAGCCTTTTCTGTAAAAGTTATTAATATTTCAAGTTTAAGATCTCATTTTATTTTTGCTTTAGGCCACTAATATGTTCAAATCGCTTCCGTTTAAATTTATAATAATCATCTCTCAAATTAAGTGGAAAAGGCAAATCTTTGCCCATTATTCGAACTTATGACTACGTCAAAACTTACTGTCAGATTAAAAAAAAAAAGAAAA</genome_strand>
        <mrna_strand>AGGGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTAN.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735165" ref_strand="+" ref_description="SGN-E735165 [LB14CD12]">
      <seq>gaggccatctgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86357" stop="20958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86057" g_stop="85936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="187" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84304" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="660" r_length="473" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84303" i_stop="79558" i_length="4746">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.382" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79557" g_stop="79541" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="677" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E735165" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86057" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84304"/>
          <exon e_start="79557" e_stop="79541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGATTATCCTTATTGAAAGATTCAAGTTGGAGAAAGTTGTGTTCTTGAAACAGCATACTGTTAGGTGAGGAAGTACAAAAATACTGTTTTAGTCTTATCGATCTATTGGTTTCTTGGCAATTAAAGTTTTGGAGTAAACCGGATGTAACATTTTCAAATAGATTTATACTAGGGTAGGGGCAGACTTTTCATAGCAACCTAAAATAAAACCTGCAATTTCCAATTGAGTATTTAATTCCTTTTGAAGTCAACAAAGTAAAAGAACAACAGAGAGAGTTTTCCGATGCTAGGTTTAATAGTTTCAACCTAATCTTAAAAACTGAAAATCATCTGCAGAACTAATGTCTTCTGGATTATCATTTTGGTAGGGAGGGAAGAGGTCTTCCTTCATATGCACCGCGAATTTAATGGGACTTCACGTACTCTTGGACAATATGCAGACCCTCAGTCTCTTCTCCGTAATCCTGCAAAACGATCACAAGATCAGCTATCATCTCTTTTCATAACTTACCAGGTTCTATTCATATTTCAGCATTTTCAAGAGATATTTTCCTATAATTGCGGGAAGATATAACCAAATTATAGAAAGAGATTATGATACGCAGCAGTTCATGGATTATACCTTCACAACAACACAGCCACAGCCGACCACCTTCCTTGCTTTCCCTTCAGAATCAATCTTACACAACTGTAAACAGACCCCAAAAATAAGAATTTAAAAAAGAAAAAGTTTGTACTCCAATGATGAAAATGCAAATCAAGAGAGTCACGAAGTAAATAGTTATCATCAACTTCCTTAAAAGGACAAATAGGTCTATTATTTTAATAACTGACAAAACCCCGGACTAATAGCAAAGTTCGAAACTCAGTGAATAACAAGCTTTTGTCTCCGCAAGGCATGTGCTTAACCCAGACAATATCACGTGTTGTGGTCGTACAACTAGACCATCAGTAGGTTTACTGGTTAGGCACAACCTTCATAACACACTTTCCAGGTCATTTTCGAAATCAGAAGGTAAGAGTGGCAGACAGTAAAACTGGGAGAGCCTTGGAGCTAAAAAGTAGCAACCACAAATAAACTTACACCAGCCCATTCGCCAAGAGTTTTTGCATTCGGAACCGTAATCAAACTGACATTGTGATCAGCACAGAGCGCTTTGACCAATTTGACATAATCTGGCTGGTCACAGTCCTCTGCTAACACACAAAGCTGTGCAGCATGCTTCTCAATCACCTTTGCACCTTCATGTAGTCCCCGAGAGAGGCCTCCATGAGCCTTAGACTTCCTCAGCACCAGCTGCAAAGCAGTCATGATGTCCATGGGCTCTCCAAGTGATGGAGCAGGAGCCTCGGCAACAGCAACAGCAACATCCTCTCTACAGTCAAAGGAAATATTAAGCAGAGAACCCTCGGGGAAAAGTTTAAGGTAGTAAAAAACTAAAAGAACATAATTAATTAAGCACAGATCAGTATCAAATGTGGCATGAATAATGGAAAACTGAAAAACAAAGTCCAGTTTTCACTCTTTTCAGCAAAGGCAAACTGAAAGGGATATCCCCAACCATTAAGGCCACATTCGATGAAACTTGAGAGACAGCTTAACTTCGGATACCGAGTCCAATCAATGGTTTGCCAGGGAATAGAAATACCCCCATTGATTTGAACTTCCAAGACAGAAGCTGATTCTCAAAATTTTGAACTAATCTAAAATGTTTATATGATGTGTAAAATGTCTGATACCAGATGAGAACTGTTATCAATGGCTCACTGTATAATTTTCTGGAAACAAGGAACAGAGTACTGCTCCATATAAACTAAAGCCATCGTGGTGAGACATTCTATTTCCTGTTTAAATTTTACATCCACTTCATAAAAAGATGGAGAGCAATCTCATGACATTCATGTAAAACCAAGAAGGAGACTGATAAAGAGATGATACAGAAGGATGGGAAAGAGGAAGGAGATCAAGAAGGGCAAAGGACAAAGAAACAAAAGAGTTTCCCAGAGAATTGATGACCATCTCAAGTCACTATCAATATGTGATAGGTTCCTACACTGGGAATTTTCCATTTGTTCACTGAAAAAGGACCTCACTCTTCATCTTACATACTTCAACAAATAAAACATTTCACCAAACTCGCTACTTTGCCATAAAAATGAAACCCCTAAAATCAGTCCATTTTCTCTAAGATAAATATTGTGAAGAATAACACTCTTGTCTATCCACATCACTGATCATTCATTTCAGGGTCGACCTATGAATATAAGACTTTCTATATCTTACACTTCTGTATTTGGGGGTAGCGATCGCATGTTTTTGGCTTTTCGTAAGCGTTATCAGGCAAGTGGTATTTAGTTCTGCTTCAAGCAATTAACTAGCAAAGCAGCAAAGTCCTACATGGTTCTGCTAAATGGGTTCTTGTGATGCTCTTATAGGAACATCTACTAAGTAATAAGGTCAACACTCTTTTTCTTGTTTCCTGAAATTTCAAAACATGACACGATCGTACAAAGTCTTGTGTACTACAATCAATCAACTATCCCAATATATCGATTCCACTATACTTAGACCCAGATAGTTCTAATACTCAATAATTTGTAACGAACTCCCTGAAAGAAGCGATTCACTAAACAGCACACTTATTCCCTACATTGGCATACAAATCTATAACCAAACTAATGGCTCCTCGCAAACATAGGAATGTAATTGTAAATGAATAGTTCAAATAGCACTCAAATAACAACAGACTACTACACACACAAACATAATCACACACCAAGTTGCAAAAACTACTGGTAAAGCTGATCAAGATACTGGTCTCCAGCTCATTACAACCGAAAACGACATCGACAGCAACACTTACAGTCAAGTAAACAAACTGAATTTGACAATAAAATTAACTGAATTCTACTTACCCCGACATTTTTCCAGCAATATTGGTATACCAAAAACTCTGCTACCTGTTCCTCTCAAAAGTAAAACACGGAATTTAGTTAGGTAAATAGAATCAACAATAGACTCCATAAACCCTCATCCCAAATATACCGTGCATATGCAGATCCCACATTTGGGTACCAAATACAACTAATTTATACAAAGACTACATCTTTAATACATATATTTCATAAAATCTTAATACTGAATATATTAAGTTCAATCAAAACATGATAAATGTGCATCAATCAAAGTATGAAAATACCCAATAAAATATTATGCAATAAGTAACAAAGAATTATATCAAACATGAATCTTGAAGTATAAAGATTGTTCCTTTTTGCCAAAATCAAGTAATGGTGAAAAGGGGTCACCTCAAAAAAATGTAGATGTCAAGAATTTTAGTTTGAGTGAATGAGGCAAGATGATGATTTATATGAACCCTAAAATAGTGGCAGTTTAATTACTGTACTACCCTTTTTCTTGATTTTATTTTTTTCATAATTTTTTTTTTTGGTTTAGGTACTAATTAACTCTTTGATCCCCTAGTTTTGGTTGAAATTTAAAAAAAAAATAAAAATACCCTTTTAAAGTATTTGGAGTTTAAAATAAAATAAAATTATATTTAGATATGAATTGTTTCTTTTGGAATTAAAGTTGAATGGTATAATAGGTTACCTTTCTAATTTATTTATTTTTAATTGTATTAGTCCTTTAATAATATTATTTCCCAACATTATTAAAGTATTTGTTAAATAACATTTGGTATGTTGTGTTAGGTACAATTTTTAAATATCAACAAAATTACTGGACTCTACATTATAAAAAAAAAAAGTTACAGAAGAAAGAAAGTGAGAACTGATTCTCTAATAGAGAGGTTCTACTATGCCTCAAAATTTAAGGGCCTCATTTTTAATAGGTTATAAGTTATTATTTTTTAACAAATATTGAATACTATTGTAGAAAAAATAAACTTTTCATGAGAATTAAGGAATTATTAAAAGAAATTTGTCATATTTGGAGTACTATATCTCATGAAAAAATAGTTTAAAATATGAATGATTATATGATTAATTGAAAATTAGAAGAAATCAATTATACAAAAGTTACGGAAAAGGGTCATATTTGCCCTTGTACTCTTAGAAAAGGGTCACATTTATCCTTTATCATAATTTTTTTAATATATTTGCCCTTACCATTCAACTTTAGACACATATTTGCCTTTGTACAGTTTAGTATTGTATCACCATTTTTATTAATCTATGTGGCGCCAACGTGACTCTATGTGCATATATTTTATTATATTATAATTTTATTTTTTATTTAGTGAATTTTATTTTAAAAAATAGGTCGGATAGTTTACTATATAGAAAAAAATTAATTATAATAAAATATATGCACATGGAGTCACGTAAACGCCACATAGATTAATAAAAATGGTGATATACTACTAAATTGTACAAGGCAAATATGTGCTTAAAGTTGGATGATAAGGATATAAAAAAAAATGACGAAGGATAAATATGATCCTTTTCTAAATGTACAAGGACAAATATGAGCCTTTTCTGTAAAAGTTATTAATATTTCAAGTTTAAGATCTCATTTTATTTTTGCTTTAGGCCACTAATATGTTCAAATCGCTTCCGTTTAAATTTATAATAATCATCTCTCAAATTAAGTGGAAAAGGCAAATCTTTGCCCATTATTCGAACTTATGACTACGTCAAAACTTACTGTCAGATTAAAAAAAAAAAGAA</genome_strand>
        <mrna_strand>GAGG-CCATCTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740436" ref_strand="+" ref_description="SGN-E740436 [LC21BG04]">
      <seq>cgctaatgttggaggcggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86373" stop="20959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86074" g_stop="85936" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="205" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84304" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="678" r_length="473" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84303" i_stop="79558" i_length="4746">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.382" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79557" g_stop="79542" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="694" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E740436" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86074" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84304"/>
          <exon e_start="79557" e_stop="79542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGATTATCCTTATTGAAAGATTCAAGTTGGAGAAAGTTGTGTTCTTGAAACAGCATACTGTTAGGTGAGGAAGTACAAAAATACTGTTTTAGTCTTATCGATCTATTGGTTTCTTGGCAATTAAAGTTTTGGAGTAAACCGGATGTAACATTTTCAAATAGATTTATACTAGGGTAGGGGCAGACTTTTCATAGCAACCTAAAATAAAACCTGCAATTTCCAATTGAGTATTTAATTCCTTTTGAAGTCAACAAAGTAAAAGAACAACAGAGAGAGTTTTCCGATGCTAGGTTTAATAGTTTCAACCTAATCTTAAAAACTGAAAATCATCTGCAGAACTAATGTCTTCTGGATTATCATTTTGGTAGGGAGGGAAGAGGTCTTCCTTCATATGCACCGCGAATTTAATGGGACTTCACGTACTCTTGGACAATATGCAGACCCTCAGTCTCTTCTCCGTAATCCTGCAAAACGATCACAAGATCAGCTATCATCTCTTTTCATAACTTACCAGGTTCTATTCATATTTCAGCATTTTCAAGAGATATTTTCCTATAATTGCGGGAAGATATAACCAAATTATAGAAAGAGATTATGATACGCAGCAGTTCATGGATTATACCTTCACAACAACACAGCCACAGCCGACCACCTTCCTTGCTTTCCCTTCAGAATCAATCTTACACAACTGTAAACAGACCCCAAAAATAAGAATTTAAAAAAGAAAAAGTTTGTACTCCAATGATGAAAATGCAAATCAAGAGAGTCACGAAGTAAATAGTTATCATCAACTTCCTTAAAAGGACAAATAGGTCTATTATTTTAATAACTGACAAAACCCCGGACTAATAGCAAAGTTCGAAACTCAGTGAATAACAAGCTTTTGTCTCCGCAAGGCATGTGCTTAACCCAGACAATATCACGTGTTGTGGTCGTACAACTAGACCATCAGTAGGTTTACTGGTTAGGCACAACCTTCATAACACACTTTCCAGGTCATTTTCGAAATCAGAAGGTAAGAGTGGCAGACAGTAAAACTGGGAGAGCCTTGGAGCTAAAAAGTAGCAACCACAAATAAACTTACACCAGCCCATTCGCCAAGAGTTTTTGCATTCGGAACCGTAATCAAACTGACATTGTGATCAGCACAGAGCGCTTTGACCAATTTGACATAATCTGGCTGGTCACAGTCCTCTGCTAACACACAAAGCTGTGCAGCATGCTTCTCAATCACCTTTGCACCTTCATGTAGTCCCCGAGAGAGGCCTCCATGAGCCTTAGACTTCCTCAGCACCAGCTGCAAAGCAGTCATGATGTCCATGGGCTCTCCAAGTGATGGAGCAGGAGCCTCGGCAACAGCAACAGCAACATCCTCTCTACAGTCAAAGGAAATATTAAGCAGAGAACCCTCGGGGAAAAGTTTAAGGTAGTAAAAAACTAAAAGAACATAATTAATTAAGCACAGATCAGTATCAAATGTGGCATGAATAATGGAAAACTGAAAAACAAAGTCCAGTTTTCACTCTTTTCAGCAAAGGCAAACTGAAAGGGATATCCCCAACCATTAAGGCCACATTCGATGAAACTTGAGAGACAGCTTAACTTCGGATACCGAGTCCAATCAATGGTTTGCCAGGGAATAGAAATACCCCCATTGATTTGAACTTCCAAGACAGAAGCTGATTCTCAAAATTTTGAACTAATCTAAAATGTTTATATGATGTGTAAAATGTCTGATACCAGATGAGAACTGTTATCAATGGCTCACTGTATAATTTTCTGGAAACAAGGAACAGAGTACTGCTCCATATAAACTAAAGCCATCGTGGTGAGACATTCTATTTCCTGTTTAAATTTTACATCCACTTCATAAAAAGATGGAGAGCAATCTCATGACATTCATGTAAAACCAAGAAGGAGACTGATAAAGAGATGATACAGAAGGATGGGAAAGAGGAAGGAGATCAAGAAGGGCAAAGGACAAAGAAACAAAAGAGTTTCCCAGAGAATTGATGACCATCTCAAGTCACTATCAATATGTGATAGGTTCCTACACTGGGAATTTTCCATTTGTTCACTGAAAAAGGACCTCACTCTTCATCTTACATACTTCAACAAATAAAACATTTCACCAAACTCGCTACTTTGCCATAAAAATGAAACCCCTAAAATCAGTCCATTTTCTCTAAGATAAATATTGTGAAGAATAACACTCTTGTCTATCCACATCACTGATCATTCATTTCAGGGTCGACCTATGAATATAAGACTTTCTATATCTTACACTTCTGTATTTGGGGGTAGCGATCGCATGTTTTTGGCTTTTCGTAAGCGTTATCAGGCAAGTGGTATTTAGTTCTGCTTCAAGCAATTAACTAGCAAAGCAGCAAAGTCCTACATGGTTCTGCTAAATGGGTTCTTGTGATGCTCTTATAGGAACATCTACTAAGTAATAAGGTCAACACTCTTTTTCTTGTTTCCTGAAATTTCAAAACATGACACGATCGTACAAAGTCTTGTGTACTACAATCAATCAACTATCCCAATATATCGATTCCACTATACTTAGACCCAGATAGTTCTAATACTCAATAATTTGTAACGAACTCCCTGAAAGAAGCGATTCACTAAACAGCACACTTATTCCCTACATTGGCATACAAATCTATAACCAAACTAATGGCTCCTCGCAAACATAGGAATGTAATTGTAAATGAATAGTTCAAATAGCACTCAAATAACAACAGACTACTACACACACAAACATAATCACACACCAAGTTGCAAAAACTACTGGTAAAGCTGATCAAGATACTGGTCTCCAGCTCATTACAACCGAAAACGACATCGACAGCAACACTTACAGTCAAGTAAACAAACTGAATTTGACAATAAAATTAACTGAATTCTACTTACCCCGACATTTTTCCAGCAATATTGGTATACCAAAAACTCTGCTACCTGTTCCTCTCAAAAGTAAAACACGGAATTTAGTTAGGTAAATAGAATCAACAATAGACTCCATAAACCCTCATCCCAAATATACCGTGCATATGCAGATCCCACATTTGGGTACCAAATACAACTAATTTATACAAAGACTACATCTTTAATACATATATTTCATAAAATCTTAATACTGAATATATTAAGTTCAATCAAAACATGATAAATGTGCATCAATCAAAGTATGAAAATACCCAATAAAATATTATGCAATAAGTAACAAAGAATTATATCAAACATGAATCTTGAAGTATAAAGATTGTTCCTTTTTGCCAAAATCAAGTAATGGTGAAAAGGGGTCACCTCAAAAAAATGTAGATGTCAAGAATTTTAGTTTGAGTGAATGAGGCAAGATGATGATTTATATGAACCCTAAAATAGTGGCAGTTTAATTACTGTACTACCCTTTTTCTTGATTTTATTTTTTTCATAATTTTTTTTTTTGGTTTAGGTACTAATTAACTCTTTGATCCCCTAGTTTTGGTTGAAATTTAAAAAAAAAATAAAAATACCCTTTTAAAGTATTTGGAGTTTAAAATAAAATAAAATTATATTTAGATATGAATTGTTTCTTTTGGAATTAAAGTTGAATGGTATAATAGGTTACCTTTCTAATTTATTTATTTTTAATTGTATTAGTCCTTTAATAATATTATTTCCCAACATTATTAAAGTATTTGTTAAATAACATTTGGTATGTTGTGTTAGGTACAATTTTTAAATATCAACAAAATTACTGGACTCTACATTATAAAAAAAAAAAGTTACAGAAGAAAGAAAGTGAGAACTGATTCTCTAATAGAGAGGTTCTACTATGCCTCAAAATTTAAGGGCCTCATTTTTAATAGGTTATAAGTTATTATTTTTTAACAAATATTGAATACTATTGTAGAAAAAATAAACTTTTCATGAGAATTAAGGAATTATTAAAAGAAATTTGTCATATTTGGAGTACTATATCTCATGAAAAAATAGTTTAAAATATGAATGATTATATGATTAATTGAAAATTAGAAGAAATCAATTATACAAAAGTTACGGAAAAGGGTCATATTTGCCCTTGTACTCTTAGAAAAGGGTCACATTTATCCTTTATCATAATTTTTTTAATATATTTGCCCTTACCATTCAACTTTAGACACATATTTGCCTTTGTACAGTTTAGTATTGTATCACCATTTTTATTAATCTATGTGGCGCCAACGTGACTCTATGTGCATATATTTTATTATATTATAATTTTATTTTTTATTTAGTGAATTTTATTTTAAAAAATAGGTCGGATAGTTTACTATATAGAAAAAAATTAATTATAATAAAATATATGCACATGGAGTCACGTAAACGCCACATAGATTAATAAAAATGGTGATATACTACTAAATTGTACAAGGCAAATATGTGCTTAAAGTTGGATGATAAGGATATAAAAAAAAATGACGAAGGATAAATATGATCCTTTTCTAAATGTACAAGGACAAATATGAGCCTTTTCTGTAAAAGTTATTAATATTTCAAGTTTAAGATCTCATTTTATTTTTGCTTTAGGCCACTAATATGTTCAAATCGCTTCCGTTTAAATTTATAATAATCATCTCTCAAATTAAGTGGAAAAGGCAAATCTTTGCCCATTATTCGAACTTATGACTACGTCAAAACTTACTGTCAGATTAAAAAAAAAAAGA</genome_strand>
        <mrna_strand>CGCTAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463733" ref_strand="+" ref_description="SGN-E463733 [cPRO-15-H18]">
      <seq>aagttcttgacatctacatttttttgaggtgacccctttttactattacctaatcttggcaaaaaggaacaatctttatacttcaagattcatgtttgatataattctttgttactcattgcataatattttattgggtattttcatactttgattgatgcacatttatcatgttttcgatttgaacttaatatattcagtattaagattttatgaaatatatgtattaaagatgtagtctttgttaaaattagttgtatttggtacccaaatgttggatcagtatatgcacggtatatttgggatgagggtttatggagtctattgttgattctatttacctaactaagttccgtgttttacttttgagaggaacaggtagtagagtttttggtataccaatattgctggaaaaatgtcaggagaggatgttgctgttgctgttgctgaggctcctgctccagcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctagagctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagaatatgtcaaattggntcaagcactctgtgctgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80597" stop="83393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80896" g_stop="81316" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.566" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83093" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="660" r_length="237" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E463733" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80896" e_stop="81316"/>
          <exon e_start="82857" e_stop="83093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTTGACATCTACATTTTTTTGAGGTGACCCCTTTTCACCATTACTTGATTTTGGCAAAAAGGAACAATCTTTATACTTCAAGATTCATGTTTGATATAATTCTTTGTTACTTATTGCATAATATTTTATTGGGTATTTTCATACTTTGATTGATGCACATTTATCATGTTTT-GA-TTGAACTTAATATATTCAGTATTAAGATTTTATGAAATATATGTATTAAAGATGTAGTCTTTGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCA</genome_strand>
        <mrna_strand>AAGTTCTTGACATCTACATTTTTTTGAGGTGACCCCTTTTTACTATTACCTAATCTTGGCAAAAAGGAACAATCTTTATACTTCAAGATTCATGTTTGATATAATTCTTTGTTACTCATTGCATAATATTTTATTGGGTATTTTCATACTTTGATTGATGCACATTTATCATGTTTTCGATTTGAACTTAATATATTCAGTATTAAGATTTTATGAAATATATGTATTAAAGATGTAGTCTTTGTTAAAATTAGTTGTATTTGGTACCCAAATGTTGGATCAGTATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAGTTCCGTGTTTTACTTTTGAGAGGAACAGGTAGTAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCTGAGGCTCCTGCTCCAGCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAGAGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGAATATGTCAAATTGGNTCAAGCACTCTGTGCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565336" ref_strand="+" ref_description="SGN-E565336 [3777]">
      <seq>gttcttgacatctacatttttttgaggtagtagagtttttggtataccaatattgctggaaaaatgtcnagagaggatgttgctgttgctgttgccgagctcctgctccagcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctagagctcatggaggcctctctcgaggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcactctgtgctgatcacaatgtcagtttggttacggtcccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagatcgattcagaagggaaagcaaggaaggtgaccggctgcggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaatttgcggtgcatatgaagacctcttccctccctatcaaaatgataatccggaagacattattctgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80599" stop="84201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80898" g_stop="80923" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80924" i_stop="81271" i_length="348">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81272" g_stop="81316" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="71" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.93"/>
            <acceptor a_prob="0.566" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="362" r_length="291" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="428" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83769" g_stop="83901" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="556" r_length="128" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E565336" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80898" e_stop="80923"/>
          <exon e_start="81272" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="83901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTGACATCTACATTTTTTTGAGGTGACCCCTTTTCACCATTACTTGATTTTGGCAAAAAGGAACAATCTTTATACTTCAAGATTCATGTTTGATATAATTCTTTGTTACTTATTGCATAATATTTTATTGGGTATTTTCATACTTTGATTGATGCACATTTATCATGTTTTGATTGAACTTAATATATTCAGTATTAAGATTTTATGAAATATATGTATTAAAGATGTAGTCTTTGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCA</genome_strand>
        <mrna_strand>GTTCTTGACATCTACATTTTTTTGAG............................................................................................................................................................................................................................................................................................................................................................GTAGTAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCNAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGA-GCTCCTGCTCCAGCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAGAGCTCATGGAGGCCTCTCTCGAGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCACTCTGTGCTGATCACAATGTCAGTTTGGTTACGGTCCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATCGATTCAGAAGGGAAAGCAAGGAAGGTGACCGGCTGCGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTTGCGGTGCATAT----GAAGACCTCTTCCCTCCCTATCAAAATGATAATCCGGAAGACATTA-TTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471703" ref_strand="+" ref_description="SGN-E471703 [cSTB-24-P20]">
      <seq>gttcttgacatctacatttttttgaggtagtagagtttttggtataccaatattgctggaaaaatgtcaggagaggatgttgctgttgctgttgctgaggctcctgctccagcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctagagctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcactctgtgctgatcacaatgtcagtttggttacggtcccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagatcgattctgaagggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80599" stop="83872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80898" g_stop="80923" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80924" i_stop="81271" i_length="348">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81272" g_stop="81316" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="71" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.566" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="363" r_length="292" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83545" g_stop="83572" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="391" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E471703" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80898" e_stop="80923"/>
          <exon e_start="81272" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTGACATCTACATTTTTTTGAGGTGACCCCTTTTCACCATTACTTGATTTTGGCAAAAAGGAACAATCTTTATACTTCAAGATTCATGTTTGATATAATTCTTTGTTACTTATTGCATAATATTTTATTGGGTATTTTCATACTTTGATTGATGCACATTTATCATGTTTTGATTGAACTTAATATATTCAGTATTAAGATTTTATGAAATATATGTATTAAAGATGTAGTCTTTGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAG</genome_strand>
        <mrna_strand>GTTCTTGACATCTACATTTTTTTGAG............................................................................................................................................................................................................................................................................................................................................................GTAGTAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCTGAGGCTCCTGCTCCAGCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAGAGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCACTCTGTGCTGATCACAATGTCAGTTTGGTTACGGTCCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATCGATTCTGAAGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332544" ref_strand="+" ref_description="SGN-E332544 [cTOD-18-I7]">
      <seq>ctcgtgccgtataaattagttgtatttggtacccaaatgtgggatctgcatatgcacggtatatttgggatgagggtttatggagtctattgttgattctatttacctaactaaattccgtgttttacttttgagaggaacaggtagcagagtttttggtataccaatattgctggaaaaatgtcggggtaagtagaattcagttaattttattgtcaaattcagtttgtttacttgactgtaagtgttgctgtcgatgtcgttttcggttgtaatgagctggagaccagtatcttgatcagctttaccagtagtttttgcaacttggtgtgtgattatgtttgtgtgtgtagtagtctgttgttatttgagtgctatttgaactattcatttacaattacattcctatgtttgcgaggagccattagtttggttatagatttgtatgccaatgtagggaataagtgtgctgtttagtgaatcgcttctttcagggagttcgttacaaattattgagtattagaactatctgggtctaagtatagtggaatcgatatattgggatangtgattgattgtagtacacaagactttgtacgatcgtgtcatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80837" stop="82041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81128" g_stop="81741" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E332544" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81128" e_stop="81741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTCTTTGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTT</genome_strand>
        <mrna_strand>CTCGT-GCCGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATANGTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332658" ref_strand="+" ref_description="SGN-E332658 [cTOD-18-H6]">
      <seq>ctcgtgccgtataaattagttgtatttggtacccaaatgtgggatctgcatatgcacggtatatttgggatgagggtttatggagtctattgttgattctatttacctaactaaattccgtgttttacttttgagaggaacaggtagcagagtttttggtataccaatattgctggaaaaatgtcggggtaagtagaattcagttaattttattgtcaaattcagtttgtttacttgactgtaagtgttgctgtcgatgtcgttttcggttgtaatgagctggagaccagtatcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80837" stop="81728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81128" g_stop="81428" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E332658" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81128" e_stop="81428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTCTTTGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATC</genome_strand>
        <mrna_strand>CTCGT-GCCGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202884" ref_strand="+" ref_description="SGN-E202884 [cLEB-1-H7]">
      <seq>gcacgaggttgattctatttacctaactaaattccgtgttttacttttgagaggaacaggtagcagagtttttggtataccaatattgctggaaaaatgtcgggagaggatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaattcgcggtgcatatgaaggaagacctcttccctccctaccaaaatgataatccagaagacattagttctgcagatgattttcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80920" stop="84216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81213" g_stop="81316" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.566" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="396" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="462" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83769" g_stop="83916" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="610" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E202884" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81213" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="83916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTT</genome_strand>
        <mrna_strand>GCACGAGGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266970" ref_strand="+" ref_description="SGN-E266970 [cLEI-7-P17]">
      <seq>tttgaggtagcagagtttttggtataccaatattgctggaaaaatgtcgggagaggatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctctgtgtgttagcagatgactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagcctgattacggctccgaatgcgaaagctcttggcgaatgggctggtttgcgtaagactgattctgaacggaaagcaaggaaggtggtcagctgtggctgtgttgttgtgaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80970" stop="83914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81266" g_stop="81316" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.566" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="343" r_length="292" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="409" r_length="66" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E266970" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81266" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG</genome_strand>
        <mrna_strand>TTTGAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTCTGTGTGTTAGCAGATGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGCCTGATTACGGCTCCGAATGCGAAAGCTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTAAGACTGATTCTGAACGGAAAGCAAGGAAGGTGGTCAGCTGTGGCTGTGTTGTTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265225" ref_strand="+" ref_description="SGN-E265225 [cLEI-2-H14]">
      <seq>tttgaggtagcagagtttttggtataccaatattgctggaaaaatgtcgggagaggatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80970" stop="83899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81266" g_stop="81316" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.566" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="343" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83545" g_stop="83599" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="398" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E265225" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81266" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTG</genome_strand>
        <mrna_strand>TTTGAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711120" ref_strand="+" ref_description="SGN-E711120 [FB01AC10]">
      <seq>gcttagtttttggtataccaatattgctggaaaaatgtcgggagaggatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaattcgcggtgcatatgaaggaagacctcttccctccctaccaaaatgataatccagaagacattagttctgcagatgattttcagtttttaagattaggttgaaactattaaacctagcatcggaaaactctctctgttgttcttttactttgttgacttcaaaaggaattaaatactcaattggaaattgcaggttttnnnnnaaaaaaaaaaaaaaaaaaaaanncccctgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80975" stop="84327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81275" g_stop="81316" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.95"/>
            <acceptor a_prob="0.566" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="334" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="400" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83769" g_stop="84027" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="659" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="686"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E711120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81275" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="84027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTT</genome_strand>
        <mrna_strand>GCTTAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540465" ref_strand="+" ref_description="SGN-E540465 [TUS-60-M2]">
      <seq>ttttggtataccaatattgctggaaaaatgtcgggagaggatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaattcgcggtgcatatgaaggaagacctcttccctccctaccaaaatgataatccagaagacattagttctgcagatgattttcagtttttaagattaggttgaaactattaaacctagcatcggaaaactctctctgttgttcttttactttgttgacttcaaaaggaattaaatactcaattggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80982" stop="84316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81282" g_stop="81316" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.566" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="327" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="393" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83769" g_stop="84025" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="650" r_length="257" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E540465" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81282" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="84025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTT</genome_strand>
        <mrna_strand>TTTTGGTATACCAATATTGCTGGAAAAATGTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548389" ref_strand="+" ref_description="SGN-E548389 [TUS-60-M2](-)">
      <seq>ttttggtataccaatattgctggaaaaatgtcgggagaggatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaattcgcggtgcatatgaaggaagacctcttccctccctaccaaaatgataatccagaagacattagttctgcagatgattttcagtttttaagattaggttgaaactattaaacctagcatcggaaaactctctctgttgttcttttactttgtgacttcaaaaggaattaaatactcaatggaaaaaaaaaaaaaaaaaaaactcgaggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80982" stop="84316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81282" g_stop="81316" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.566" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="327" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="393" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83769" g_stop="84015" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="638" r_length="245" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="657"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E548389" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81282" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="84015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAA</genome_strand>
        <mrna_strand>TTTTGGTATACCAATATTGCTGGAAAAATGTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTG-TGACTTCAAAAGGAATTAAATACTCAA-TGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289024" ref_strand="+" ref_description="SGN-E289024 [cLES-17-H12]">
      <seq>tttggtataccaatattgctggaaaaatgtcgggagaggatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaattcgcggtgcatatgaaggaagacctcttccctccctaccaaaatgataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80983" stop="84180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81283" g_stop="81316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.566" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82857" g_stop="83148" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="326" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="392" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83769" g_stop="83880" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="504" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E289024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81283" e_stop="81316"/>
          <exon e_start="82857" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="83880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTTTGAAATTTCAGGAAACAAGAAAAAGAGTGTTGACCTTATTACTTAGTAGATGTTCCTATAAGAGCATCACAAGAACCCATTTAGCAGAACCATGTAGGACTTTGCTGCTTTGCTAGTTAATTGCTTGAAGCAGAACTAAATACCACTTGCCTGATAACGCTTACGAAAAGCCAAAAACATGCGATCGCTACCCCCAAATACAGAAGTGTAAGATATAGAAAGTCTTATATTCATAGGTCGACCCTGAAATGAATGATCAGTGATGTGGATAGACAAGAGTGTTATTCTTCACAATATTTATCTTAGAGAAAATGGACTGATTTTAGGGGTTTCATTTTTATGGCAAAGTAGCGAGTTTGGTGAAATGTTTTATTTGTTGAAGTATGTAAGATGAAGAGTGAGGTCCTTTTTCAGTGAACAAATGGAAAATTCCCAGTGTAGGAACCTATCACATATTGATAGTGACTTGAGATGGTCATCAATTCTCTGGGAAACTCTTTTGTTTCTTTGTCCTTTGCCCTTCTTGATCTCCTTCCTCTTTCCCATCCTTCTGTATCATCTCTTTATCAGTCTCCTTCTTGGTTTTACATGAATGTCATGAGATTGCTCTCCATCTTTTTATGAAGTGGATGTAAAATTTAAACAGGAAATAGAATGTCTCACCACGATGGCTTTAGTTTATATGGAGCAGTACTCTGTTCCTTGTTTCCAGAAAATTATACAGTGAGCCATTGATAACAGTTCTCATCTGGTATCAGACATTTTACACATCATATAAACATTTTAGATTAGTTCAAAATTTTGAGAATCAGCTTCTGTCTTGGAAGTTCAAATCAATGGGGGTATTTCTATTCCCTGGCAAACCATTGATTGGACTCGGTATCCGAAGTTAAGCTGTCTCTCAAGTTTCATCGAATGTGGCCTTAATGGTTGGGGATATCCCTTTCAGTTTGCCTTTGCTGAAAAGAGTGAAAACTGGACTTTGTTTTTCAGTTTTCCATTATTCATGCCACATTTGATACTGATCTGTGCTTAATTAATTATGTTCTTTTAGTTTTTTACTACCTTAAACTTTTCCCCGAGGGTTCTCTGCTTAATATTTCCTTTGACTGTAGAGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAAT</genome_strand>
        <mrna_strand>TTTGGTATACCAATATTGCTGGAAAAATGTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711898" ref_strand="+" ref_description="SGN-E711898 [FB03BC08]">
      <seq>cggtatgttgctgttgctgttgccgaggctcctgctccatcacttggagagcccatggacatcatgactgctttgcagctggtgctgaggaagtctaaggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaattcgcggtgcatatgaaggaagacctcttccctccctaccaaaatgataatccagaagacattagttctgcagatgattttcagtttttaagattaggttgaaactattaaacctagcatcggaaaactctctctgttgttcttttactttgttgacttcaaaaggaattaaatactcaattggaaattgcaggtttaaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaancctccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="82560" stop="84328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82858" g_stop="83148" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="357" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83769" g_stop="84027" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="616" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="671"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E711898" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82858" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="84027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTT</genome_strand>
        <mrna_strand>CGGTATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712184" ref_strand="+" ref_description="SGN-E712184 [FB04AF01]">
      <seq>ggctcatggaggcctctctcggggactacatgaaggtgcaaaggtgattgagaagcatgctgcacagctttgtgtgttagcagaggactgtgaccagccagattatgtcaaattggtcaaagcgctctgtgctgatcacaatgtcagtttgattacggttccgaatgcaaaaactcttggcgaatgggctggtttgtgtaagattgattctgaagggaaagcaaggaaggtggtcggctgtggctgtgttgttgtgaaggattacggagaagagactgagggtctgcatattgtccaagagtacgtgaagtcccattaaattcgcggtgcatatgaaggaagacctcttccctccctaccaaaatgataatccagaagacattagttctgcagatgattttcagtttttaagattaggttgaaactattaaacctagcatcggaaaactctctctgttgttcttttactttgttgacttcaaaaggaattaaatactcaattggaaattgcaggttttattttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="82656" stop="84333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82956" g_stop="83148" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83545" g_stop="83610" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="259" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83769" g_stop="84034" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="525" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="537"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E712184" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82956" e_stop="83148"/>
          <exon e_start="83545" e_stop="83610"/>
          <exon e_start="83769" e_stop="84034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGTGTAAGTTTATTTGTGGTTGCTACTTTTTAGCTCCAAGGCTCTCCCAGTTTTACTGTCTGCCACTCTTACCTTCTGATTTCGAAAATGACCTGGAAAGTGTGTTATGAAGGTTGTGCCTAACCAGTAAACCTACTGATGGTCTAGTTGTACGACCACAACACGTGATATTGTCTGGGTTAAGCACATGCCTTGCGGAGACAAAAGCTTGTTATTCACTGAGTTTCGAACTTTGCTATTAGTCCGGGGTTTTGTCAGTTATTAAAATAATAGACCTATTTGTCCTTTTAAGGAAGTTGATGATAACTATTTACTTCGTGACTCTCTTGATTTGCATTTTCATCATTGGAGTACAAACTTTTTCTTTTTTAAATTCTTATTTTTGGGGTCTGTTTACAGTTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAGGTATAATCCATGAACTGCTGCGTATCATAATCTCTTTCTATAATTTGGTTATATCTTCCCGCAATTATAGGAAAATATCTCTTGAAAATGCTGAAATATGAATAGAACCTGGTAAGTTATGAAAAGAGATGATAGCTGATCTTGTGATCGTTTTGCAGGATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAG</genome_strand>
        <mrna_strand>GGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG..............................................................................................................................................................GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274137" ref_strand="-" ref_description="SGN-E274137 [cLEN-8-E10]">
      <seq>tccctccctaccaaaatgataatccagaagacattagttctgcagatgattttcagtttttaagattaggttgaaactattaaacctagcatcggaaaactctctctgttgttcttttactttgttgacttcaaaaggaattaaatactcaattggaaattgcaggttttattttaggttgctatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="83558" stop="84347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83858" g_stop="84047" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="191" polyA_stop="204"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E274137" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274137" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83858" e_stop="84047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAGGTTGCTATGAAAA</genome_strand>
        <mrna_strand>TCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAGGTTGCTATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363727" ref_strand="+" ref_description="SGN-E363727 [cLPP-3-K1]">
      <seq>cgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccacgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcaggatttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggtttttccctctctctcctcttactaagtatatttgtctaccttgaaggtagtaatacatactatgaggttactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86329" stop="84085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86029" g_stop="85936" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="160" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84439" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="480" r_length="320" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84438" i_stop="84180" i_length="259">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.454" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84179" g_stop="84169" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="491" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="554"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E363727" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86029" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84439"/>
          <exon e_start="84179" e_stop="84169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGATTATCCTTATTGAAAGATTCAAGTTGGAGAAAGTTGTGTTCTTGAAACAGCATACTGTTAG</genome_strand>
        <mrna_strand>CGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGATTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGG--------------TT-TTTCCC--T-CTCTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAATA...................................................................................................................................................................................................................................................................CATACTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343671" ref_strand="+" ref_description="SGN-E343671 [cTOF-20-C14]">
      <seq>aatgttggaggcggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtgggaggtaccaattttactgctattttgaagatttcactctatagcttatcatatatgtcacaccatggacactgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86370" stop="83929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86070" g_stop="85936" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="201" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84229" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="750" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E343671" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86070" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGT-GGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGAT</genome_strand>
        <mrna_strand>AATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238959" ref_strand="+" ref_description="SGN-E238959 [cLEL-9-H9](-)">
      <seq>cagggtttgcatctctaaacgatcatgtgagcagagaacagaagaatttaccgaacagctgagaaaacagaatggcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccnagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaggtaccaattttactgctattttgaagatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="85015" stop="20959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84715" g_stop="84256" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E238959" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84715" e_stop="84256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAAT-GCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACC-AGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCAT</genome_strand>
        <mrna_strand>CAGGGTTTGCATCTCTAAACGATCATGT-GAGCAGAGAACAGAAGAATTTACCGAACA-GCTGAGAAAACAGAATGGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCNAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239321" ref_strand="+" ref_description="SGN-E239321 [cLEL-9-H9](-)">
      <seq>agagaacagaagaatttaccgaacaggctaagaaaacaggaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaggtaccaattttactgctattttgaagatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84982" stop="20959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84682" g_stop="84256" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E239321" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84682" e_stop="84256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACA-GAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCAT</genome_strand>
        <mrna_strand>AGAGAACAGAAGAATTTACCGAACAGGCTAAGAAAACAGGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744455" ref_strand="+" ref_description="SGN-E744455 [GI|399616]">
      <seq>agccaagaaacatgccctaaccatggctacaatcaccttctcttccattggtttctcctcttactaagtatatttgtctacctgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtgaaggtaccaattttactgctattttgaagatttcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84839" stop="83968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84539" g_stop="84268" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E744455" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84539" e_stop="84268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCT</genome_strand>
        <mrna_strand>AGCCAAGAAAC-ATGCCCTAACCATGGCTACAATCACCTTC-TC-TT-CCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCT-GAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGAAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539197" ref_strand="+" ref_description="SGN-E539197 [TUS-58-N9](-)">
      <seq>cggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaggtaccaattttactgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86359" stop="83986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86059" g_stop="85936" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="190" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84276" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="691" r_length="501" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E539197" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86059" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGAT</genome_strand>
        <mrna_strand>CGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539199" ref_strand="+" ref_description="SGN-E539199 [TUS-58-N9]">
      <seq>cggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaggtaccaattttactgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86359" stop="83986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86059" g_stop="85936" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="190" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84277" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="690" r_length="500" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E539199" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86059" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGA</genome_strand>
        <mrna_strand>CGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734045" ref_strand="+" ref_description="SGN-E734045 [LB11CE09]">
      <seq>gaataaaggagcaaatgttggaggcggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaggtaccaattttactgctattttgaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86383" stop="83977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86083" g_stop="85936" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="214" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84278" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="713" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="724"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E734045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86083" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAG</genome_strand>
        <mrna_strand>GAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740552" ref_strand="+" ref_description="SGN-E740552 [LC21DG04]">
      <seq>cagcttatgttggaggcggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacaccagttatagtggaaaaaaaaaaaataaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86374" stop="84005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86075" g_stop="85936" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="206" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84304" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="679" r_length="473" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="695"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E740552" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86075" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAG</genome_strand>
        <mrna_strand>CAGCTTATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740909" ref_strand="+" ref_description="SGN-E740909 [LC23BG04]">
      <seq>cttaaatgtagaatcgacctgaagggggggtaccgcacccacttccccctctcgtgagccgaataaattactgctgatggtggatgctgatattgggaatattgttgacaattatggcttctttgtgaacgctgcacgggtcaatgatcctcctgtccgaaattcgcaagaagcgtttgtgatggagatgcgtgcatctatgatggtccatgcagctgattcactgcttaagttggtgtccgagttgaaacaaacagccatgttttcagggtttgcatctctgaacgatcttgtggagcagagaacagaagaatttaccgaacaggctgacaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaatgagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaaaatatgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86318" stop="84018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86008" g_stop="85936" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="139" r_length="73" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="205" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84318" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="664" r_length="459" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E740909" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86008" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACAC</genome_strand>
        <mrna_strand>ATTACTGCTGATGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCTTTGTGAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCTCCTGTCCGAAATTCGCAAGAAGCGTTTGTGATGGAGATGCGTGCATCTATGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCCGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTGAACGATCTTGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGACAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAATGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693073" ref_strand="+" ref_description="SGN-E693073 [LH_Ea10F23]">
      <seq>catttgttggaggcggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcacaagaagcatttatgatggagatgcgtgcatctaggatggtccacgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcaggatttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagcctcaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtagtctgccttcttacagccaagaaacaatgccctaaccatggtttttccctctctctcctcttactaagtatatttgtctaccttgaaggtggtgatacatactatgaggttactggacaaacaatctaatgatgagaaatccaatttggtcccaacttactactacaaggcctcattaactcagtatttgttgtaacaaatcaactgcattctagctaagaaacactaattatagtggaggtaccatacttccaattttactgctangnagaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86372" stop="83994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86072" g_stop="85936" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="203" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84329" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="653" r_length="450" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E693073" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86072" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACC---AGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAA</genome_strand>
        <mrna_strand>CATTTGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCACAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGATTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTCAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGTTTTTCCCTCTCTCTCCTCTTAC-TAAGTATATTTGTCTACCTTGAAGGTGGTGATACATACTATGAGGTTACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285386" ref_strand="+" ref_description="SGN-E285386 [cLER-20-B20]">
      <seq>gccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttacttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86334" stop="84085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86034" g_stop="85936" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="165" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84392" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="550" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="565"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E285386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86034" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACT</genome_strand>
        <mrna_strand>GCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722717" ref_strand="+" ref_description="SGN-E722717 [FC18AD07]">
      <seq>gcgattggcggccaatcggccgaattcacgatttactacttcaaaatttctaagatttaatgctttttgatagcatgaattaatttgaacttgtggtctctgttaatttgaccattgcaaatttctgataaaaataagaaaaaggaagttaggtttcaaccaacaatgaataaaggagcaaatgttggaggcggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcaaagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcaaagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattggtttctcctcttactaagtatatttgtctaccttgaaggtagtaactggacaaacaatctaatgatgagaaatccaatttggtcccaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86529" stop="84093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86221" g_stop="85936" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="315" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="381" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84393" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="765" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E722717" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86221" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTACTACTTCAAAATTTCTAAGATTTAATGCTTTTTGATAGCATGAATTAATTTGAACTTGTGGTCTCTGTTAATTTGACCATTGCAAATTTCTGATAAAAATAAGAAAAAGGAAGTTAGGTTTCAACCAACAATGAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTAC</genome_strand>
        <mrna_strand>GATTTACTACTTCAAAATTTCTAAGATTTAATGCTTTTTGATAGCATGAATTAATTTGAACTTGTGGTCTCTGTTAATTTGACCATTGCAAATTTCTGATAAAAATAAGAAAAAGGAAGTTAGGTTTCAACCAACAATGAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAAAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAAAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278692" ref_strand="+" ref_description="SGN-E278692 [cLER-10-N10]">
      <seq>ggcggaccaactgctgccgcggccgccgccgcagctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcgcaagaagcatttatgatggagatgcgtgcatctaggatggtccatgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcagggtttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggctacaatcaccttcttctttcccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86358" stop="84186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86058" g_stop="85936" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="189" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84486" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="480" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E278692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86058" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTG</genome_strand>
        <mrna_strand>GGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358156" ref_strand="+" ref_description="SGN-E358156 [cLHT-23-E3]">
      <seq>aaaggatcaaatgttggaggcggcggaccaactgctgccgcggccgccgccgcatctcaaaagcagaagagcttactgcagagggtggatgctgatattgggaatattgttgacaattatggcttcattgttaacgctgcacgggtcaatgatccaccagtccgaaattcacaagaagcatttatgatggagatgcgtgcatctaggatggtccacgcagctgattcactgcttaagttggtgtcggagttgaaacaaacagccatgttttcaggatttgcatctctaaacgatcatgtggagcagagaacagaagaatttaccgaacaggctgagaaaacagaatgcatgttatctagaattggagaggaggcagctgctagccttaaggagcttgagtcacattattattcttctgcagaaagaaccagtagtctgccttcttacagccaagaaacaatgccctaaccatggtttttccctctctctcctcttactaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86379" stop="84165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86079" g_stop="85936" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85377" g_stop="85312" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="210" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84776" g_stop="84514" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="473" r_length="263" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E358156" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86079" e_stop="85936"/>
          <exon e_start="85377" e_stop="85312"/>
          <exon e_start="84776" e_stop="84514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGGGTATGCCCCCATTTCCTTCACCTTCTACCCAGTACTAAAAAATACAGATCGCCCATTAAATTTATACTTCTAAGTTTCTCGGGGCCGAAAACCTTGGCTGTAGAACAAGTAGTGCTCAATTTTAAACTTTTATGTGCAATTGTTGTGATTAAAGTGTCTTGAAGTTGTGGTGGTTTGGTCTGATTAAAGGGAAATTCTAAATCTTGCATGATTTTTGAGACTAATCGCATACCAATGTATCTTTTCCAATTATTGATTGTAGGAATCATTGTTGACATCTCTAATGTGTGGAACAAAATTCAAAATTTGAAACTTACTTCTACAGACAATTGATAGATTAAACTTTGAGATGACATGATTTGTTGAAAAGGGGAAAAGTGATAAATTTCTGTGTCTTGAACATCTCTTTTGCTGCTCATTTGTTCCATTTTAGCTGTGAAGTCCATTATGCTAGTTTCCAACTGTTACAGTGAGACTAGGAGATATATTTACCTTATGTTCTTGCAGATGGGTAATGTAATGTATTTGTCTCCTCTTGTTGACAACTGCTTATAATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATGGTGAGTTTTTTTTTCTCCACTTATACATTGCTCTGGTGTTCGATGAGATGTTCATCTCAAATTAGATTGAATGTGCATATGAATGGAACACATTTCTTATTTGCAAATTGACAGTATTCATGTGTGAAAAAAGTTGCTCTCTGACCTGAACTCGTACTGCAAAAACTGTTTTTTTACTGTATATGACTGAACAAGGGAAACAAAGGTCATCACCATTTTAAAGTCGTTCTATAATTTGTGGTGACTTTTACTCATTATCCACTTCTTTTTTGACAAAGAACGCAAGTTTTTCCCTAAAGCTATAAGCGAGATCCTCTCTCTGCCTCTTCTCGTAGCTTCAGTTGCCTTCTCGTGAGGGCTAGTCATCTACTATCCTTGACATAGCTTGTTGTGTTTCCTGCTATAAGCAAGACTTGATGTCATTTCCTTTTTGAGCTGATGCAAAGACTTCCACTCAAGTGCAGAGATCTTAAATTTTCAGATACAACTATTCTCCTATCATCTCATATAATATATTGGATGCAATGAACAACAGGTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATG</genome_strand>
        <mrna_strand>AAAGGATCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCATCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATCCACCAGTCCGAAATTCACAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGATTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390033" ref_strand="+" ref_description="SGN-E390033 [TUS-4-J20](-)">
      <seq>gaggagaacgcgagaaatgttcaatccactgctgacaatgagatagatgaaggcagtgatcaggacgcatatgctgcaagacgtggaaacggaagaagtcagaaacagagcagaccaaaaccaagcttaaagcagccgcctttgaaagttgcacgcaaaagctcatctagtgctgctcaagccaatctaattatatcgaagaaaccttggccggttaaagaagagaacttcaatgaagaagatagtgaagaaacagaggaggagcgggatgatgttggcgatggatggaggtatggtgaaaacgatgacgacgatgaagagactgaagaagatgactaggcttatatgtcatacatactcataggtagttaagtagtacactatgttttgggatataaatggttgtcattgtctagaaaatgggattggtccttgcttgttaatgcctttttgtgttttatgaaaagcatgaggctttagctgtttcctaaaccccaccctctcacctagctccatggaacatggagatttgcagaacactctgagcttcttattcatttttattccataaaaacaaactgacatctcttattactattattattatgtataaatttggccatttcgaggacttttctccataattgaaatatataatcaaacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="87504" stop="86271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87204" g_stop="86535" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E390033" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87204" e_stop="86535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCCTCTCACCTAGCTCCATGGAACATGGAGATTTGCAGAACACTCTGAGCTTCTTATTCATTTTTATTCCATAAAAACAAACTGACATCTCTTATTACTATTATTATTATGTATAAATTTGACCATTTCGAGGACTTGAGATCCATAATTTGTTATATATAATTCAAACAATT</genome_strand>
        <mrna_strand>GAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCCTCTCACCTAGCTCCATGGAACATGGAGATTTGCAGAACACTCTGAGCTTCTTATTCATTTTTATTCCATAAAAACAAACTGACATCTCTTATTACTATTATTATTATGTATAAATTTGGCCATTTCGAGGACTT-TTCTCCATAA-TTGAAATATATAA-TCAAACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550252" ref_strand="+" ref_description="SGN-E550252 [TUS-5-J20](-)">
      <seq>acgaaggttgtgacaaatcttacatccatgagtacaagctgaatcttcatttgaggaacatgcaccctggtcatttcccagaggagaacgcgagaaatgttcaatccactgctgacaatgagatagatgaaggcagtgatcaggacgcatatgctgcaagacgtggaaacggaagaagtcagaaacagagcagaccaaaaccaagcttaaagcagccgcctttgaaagttgcacgcaaaagctcatctagtgctgctcaagccaatctaattatatcgaagaaaccttggccggttaaagaagagaacttcaatgaagaagatagtgaagaaacagaggaggagcgggatgatgttggcgatggatggaggtatggtgaaaacgatgacgacgatgaagagactgaagaagatgactaggcttatatgtcatacatactcataggtagttaagtagtacactatgttttgggatataaatggttgtcattgtctagaaaatgggattggtccttgcttgttaatgcctttttgtgttttatgaaaagcatgaggctttagctgtttcctaaaccccaccctctcacctagctccatggaacatggagatttgcagaacactctgagcttcttattcatttttattccataaaaacaaactgacatctcttattactattattattatgtataaatttggccatttcgaggacttgagatccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="87584" stop="86260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87284" g_stop="86560" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E550252" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87284" e_stop="86560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCCTCTCACCTAGCTCCATGGAACATGGAGATTTGCAGAACACTCTGAGCTTCTTATTCATTTTTATTCCATAAAAACAAACTGACATCTCTTATTACTATTATTATTATGTATAAATTTGACCATTTCGAGGACTTGAGATCCATAA</genome_strand>
        <mrna_strand>ACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCCTCTCACCTAGCTCCATGGAACATGGAGATTTGCAGAACACTCTGAGCTTCTTATTCATTTTTATTCCATAAAAACAAACTGACATCTCTTATTACTATTATTATTATGTATAAATTTGGCCATTTCGAGGACTTGAGATCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605250" ref_strand="+" ref_description="SGN-E605250 [21165]">
      <seq>gagaacttcaacgaagaagatagtgaagaaacagaagaggagcgggatgatgttggggatggatggaggtatggtgaaaacgatgacgacgatgaagagactgaagaagatgactaggcttatatttcatacatactcataggtagttaagtagtagtatgttttgggataaatggttgtcactgtctagaaaatgggattggaccttgcttattaatgcctttttgtgttttatgaaaagcatgaggttttagctgtttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="87282" stop="86413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86982" g_stop="86705" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E605250" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86982" e_stop="86705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCC</genome_strand>
        <mrna_strand>GAGAACTTCAACGAAGAAGATAGTGAAGAAACAGAAGAGGAGCGGGATGATGTTGGGGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATTTCATACATACTCATAGGTAGTTAAGTAGT--AGTATGTTTTGGG--ATAAATGGTTGTCACTGTCTAGAAAATGGGATTGGACCTTGCTTATTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGTTTTAGCTGTTTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550471" ref_strand="+" ref_description="SGN-E550471 [TUS-5-J20]">
      <seq>accagatgcacatgcacatccacatccacatgctcatgcaccaaagtataccccgcctgtggagaagccagtgaagactccgaaatcttcttcagcagcttatggctcatcatcatctgaccgtccttacagctgtccatacgaaggttgtgacaaatcttacatccatgagtacaagctgaatcttcatttgaggaacatgcaccctggtcatttcccagaggagaacgcgagaaatgttcaatccactgctgacaatgagatagatgaaggcagtgatcaggacgcatatgctgcaagacgtggaaacggaagaagtcagaaacagagcagaccaaaaccaagcttaaagcagccgcctttgaaagttgcacgcaaaagctcatctagtgctgctcaagccaatctaattatatcgaagaaaccttggccggttaaagaagagaacttcaatgaagaagatagtgaagaaacagaggaggagcgggatgatgttggcgatggatggaggtatggtgaaaacgatgacgacgatgaagagactgaagaagatgactaggcttatatgtcatacatactcataggtagttaagtagtacactatgttttgggatataaatggttgtcattgtctagaaaatgggattggtccttgcttgntaatgccntttttgtgtttatgaaaagcatgaggctttagctgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="87724" stop="86418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87424" g_stop="86718" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E550471" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87424" e_stop="86718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCC-TTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTC</genome_strand>
        <mrna_strand>ACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGNTAATGCCNTTTTTGTG-TTTATGAAAAGCATGAGGCTTTAGCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389861" ref_strand="+" ref_description="SGN-E389861 [TUS-4-J20]">
      <seq>accagatgcacatgcacatccacatccacatgctcatgcaccaaagtataccccgcctgtggagaagccagtgaagactccgaaatcttcttcagcagcttatggctcatcatcatctgaccgtccttacagctgtccatacgaaggttgtgacaaatcttacatccatgagtacaagctgaatcttcatttgaggaacatgcaccctggtcatttcccagaggagaacgcgagaaatgttcaatccactgctgacaatgagatagatgaaggcagtgatcaggacgcatatgctgcaagacgtggaaacggaagaagtcagaaacagagcagaccaaaaccaagcttaaagcagccgcctttgaaagttgcacgcaaaagctcatctagtgctgctcaagccaatctaattatatcgaagaaaccttggccggttaaagaagagaacttcaatgaagaagatagtgaagaaacagaggaggagcgggatgatgttggcgatggatggaggtatggtgaaaacgatgacgacgatgaagagactgaagaagatgactaggcttatatgtcatacatactcataggtagttaagtagtacactatgttttgggatataaatggttgtcattgtctagaaaatgggattggtccttgcttgttaatgcctttttgtgttttatgaaaagcatgaggctttagctgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="87724" stop="86418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87424" g_stop="86718" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E389861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87424" e_stop="86718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTC</genome_strand>
        <mrna_strand>ACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591381" ref_strand="-" ref_description="SGN-E591381 [45092]">
      <seq>gagtacaaactttaaaaatcatatgtgatctactcaccagaaggacaacacaccagatgcacatgcacatgcacatgcacatacacatgcaccaaagtatactccgcctgtggagaagccagtgaagactccgaaatcttcttcagcagcttatggctcatcatcatctgaccgcccttacagctgtccatatgaaggttgtgacaaatcttacatccatgaatacaagctgaatcttcatttaaggaacatgcaccctggtcatttcccagaggaaaacgcgagaaatgttcaatccactgctgacaatgagatggacgaaggcagtgatcaggatgcatatgctgcaagacgtggaaacggaagaattcagaaacagagcagaccaaaaccaagcttaaagcaaccacctttaaaagttgcacgcaaaagctcatctagtgctgctcaagtcaatctaagtatatcgaagaaaccttggccgattaaagaagagaacttcaatgaagaagatagtgaagaaacagaagaggagcgggatgatgttggggatggatggaggtatggtgaaaacgatgacgacgatgaagagactgaagaagatgactaggcttatatactcataggtagttaagtactatgttttgggatataaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="88498" stop="86504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88198" g_stop="88157" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88156" i_stop="87433" i_length="724">
            <donor d_prob="0.992" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87432" g_stop="86858" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="618" r_length="575" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E591381" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591381" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88198" e_stop="88157"/>
          <exon e_start="87432" e_stop="86858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACAAGCTT-AAAAATCATATTTCATCTACTCACCAGAAGGTTTGTGATTTGCTCTATCGTCCTTGTCTTGACCAGGATATACTTATACAGACTTTATGAACTTTTTCCATCTTTGATCACAAACAAGGTGCTAAATGTCCTAAATGTTTCATCAATAATCACTTGCTGTTTCTTCCCAACTTTGGATCGTTAACATTATTTAAGCCAATTCTTCTTTGTAAACCAGACTGAACTTTAATTTCATATGCACATGTTTACTTTCTTTGAACATATTTATCTTTAAGATTTTCCTTGCCCATAAATTCCAATATGCTGGAGGAGCTCTGTTAGATATCTTTATTGGTATTTTTTATGTTGCATACCCATTACTCCTTCATTTCCTTGTTAAAGATGTTTTAAAGGAAAAAGATGCTATTCAATGTGTAATCTTTTCCTCAAAATAAATGTGGATAGAATTTTTATCGCCTGTTAATGGTTGGCTTCAGTCACTTTTAAGTATACTGCGTAGAATAGAAGTTGACTTCATAACCAGAACTCAGCATAAAAGACAGTAGTTATGTAGGGATTAATGTCCTGTATCACTTCATGCATCACTAAATTTATCACTTTTTGATGTTTGTGTTGACAGTTTCATCTAATGATTCACTAGATGTTTAAGCTAATAGTTTCCTGTAGACATGTCACATGTGGATGCACCTTGTTTTTCATCTTGTAACGTAGCACTTGAAGCTGGATTTGCTTATTAAATCTTTTCATTATGTAGAACAACACACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATAT</genome_strand>
        <mrna_strand>GAGTACAAACTTTAAAAATCATATGTGATCTACTCACCAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACACACCAGATGCACATGCACATGCACATGCACATACACATGCACCAAAGTATACTCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGCCCTTACAGCTGTCCATATGAAGGTTGTGACAAATCTTACATCCATGAATACAAGCTGAATCTTCATTTAAGGAACATGCACCCTGGTCATTTCCCAGAGGAAAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATGGACGAAGGCAGTGATCAGGATGCATATGCTGCAAGACGTGGAAACGGAAGAATTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAACCACCTTTAAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGTCAATCTAAGTATATCGAAGAAACCTTGGCCGATTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAAGAGGAGCGGGATGATGTTGGGGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233640" ref_strand="+" ref_description="SGN-E233640 [cLED-14-A4]">
      <seq>ccagatgcacatgcacatccacatccacatgctcatgcaccaaagtataccccgcctgtggagaagccagtgaagactccgaaatcttcttcagcagcttatggctcatcatcatctgaccgtccttacagctgtccatacgaaggttgtgacaaatcttacatccatgagtacaagctgaatcttcatttgaggaacatgcaccctggtcatttcccagaggagaacgcgagaaatgttcaatccactgctgacaatgagatagatgaaggcagtgatcaggacgcatatgctgcaagacgtggaaacggaagaagtcagaaacagagcagaccaaaaccaagcttaaagcagccgcctttgaaagttgcacgcaaaagctcatctagtgctgctcaagccaatctaattatatcgaagaaaccttggccggttaaagaagagaacttcaatgaagaagatagtgaagaaacagaggaggagcgggatgatgttggcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="87723" stop="86619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87423" g_stop="86919" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E233640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87423" e_stop="86919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGAT</genome_strand>
        <mrna_strand>CCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703808" ref_strand="+" ref_description="SGN-E703808 [FA22CB02]">
      <seq>gcaactggtgggaagtgctacgtcttaaagtgggtgaatgaggccacattaaaagctctgagggagaagccaaaagaggcaggagtacctgtgtcagaaccagagccaactactgaagttctttttctttgtagctatgaaggttgtggaaagacatttattgatgctggggccttgaggaagcattctcacatccacggggagaggcagtatgtatgccactatgagggttgtggaaagaaattcttggatagttccaagctaaaacgacactttcttattcacactggagaaagagactatgtgtgtccacatgaaggctgtggtaaggcattctcactggattttaacttaagatcacacatgaaaacacactcccaggagaactatcatatttgcccgtatccagaatgtggaaagcgatatgcacatgagtacaagcttaaaaatcatatttcatctactcaccagaagaacaacacaccagatgcacatgcacatccacatccacatgctcatgcaccaaagtataccccgcctgtggagaagccagtgaagactccgaaatcttcttcagcagcttatggctcatcatcatctgaccgtccttacagctgtccatacgaaggttgtgacaaatcttacatccatgagtacaagctgaatcttcatttgaggaacatgcaccctggtcatttcccagaggagaacgcgagaaatgttcaatccactgctgacaatgagatagatgaaggcagtgatcaggacgcatatgctgcaagacgtggaaacggaagaagtcagaaacagagcagacccaaaccaagcttaaagcagccgcctttgaaagttgcacgcaaaagctcatctaatgctgctcaagccaatctaattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93428" stop="86710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93128" g_stop="93089" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93088" i_stop="92920" i_length="169">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92919" g_stop="92720" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="240" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92719" i_stop="90641" i_length="2079">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90640" g_stop="90551" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="330" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90550" i_stop="88301" i_length="2250">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88300" g_stop="88157" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="474" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88156" i_stop="87433" i_length="724">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87432" g_stop="87010" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="897" r_length="423" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E703808" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93128" e_stop="93089"/>
          <exon e_start="92919" e_stop="92720"/>
          <exon e_start="90640" e_stop="90551"/>
          <exon e_start="88300" e_stop="88157"/>
          <exon e_start="87432" e_stop="87010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGGTGGGAAGTGCTACGTCTTAAAGTGGGTGAATGGTAAGTTCTGAATTCTGCTTCAGTACATCTTTTGGATAGTCTTGTGTTGATTAATCTTATATTCTTTATTTTTCCGTATCTTTTCTTGATTTTCAAATGCATATGCTGTGGCTTTTGGGTTGTACATTGAATTTGACCTTATACTCCTCCTTTCTATTTTGTTTATCAGAGGCCACATTAAAAGCTCTGAGGGAGAAGCCAAAAGAGGCAGGAGTACCTGTGTCAGAACCAGAGCCAACTACTGAAGTTCTTTTTCTTTGTAGCTATGAAGGTTGTGGAAAGACATTTATTGATGCTGGGGCCTTGAGGAAGCATTCTCACATCCACGGGGAGAGGCAGTATGTATGCCACTATGAGGGTTGTGGAAAGGTGAGTTTTTGTTGTCTTTGTATTGAGACTGCACTAAATGCTTGATTATTTCATTGTATTGATTCTACCATCATTTTACTTATTTTGCTTTCATGATACTTCCCTCCGGACTCTGGCAGGGTTTGATTGGGGGAGGAAGTGATGGGCATATGGAATTCGTTCTTTTTCGCAATTATATTACCTTCGTTTATGTAGTGCTTCTTTCTAGAAATCTGCTTTTCAAGATACCGTAGGTGTTCCTTGAGCTCATAAGATACTTCCGTAATAAATATTGATTGGCTGAGGAGTTGATTTAGGTTGTATTACTTATCAAACAAACGTTCACTGAAGTTGTATTTCCGGAAGTATTGTTTCATTTACTGCTGAACCGTCTTCAACCATTTTGAGCCTCAGATTGTGGGAAAAAAGAACCTCTCAATCTTATACAAGGAAGAGGAAAGGTTTGCGTATGGTGAAAAAAAGAAAAATCAGAGTTAGGTTTGTACAACAACTACTACTACACTTCAATCTCAAGCATTACTCATTATCAAGTAGGGAATTGAAAAATGTCAAAGATCATTCTTGAGATTTTGAGTTATCTGTCAGTGAAAGGAACGAAGTTTCAAAAAAAATAAAAAATTCCCATAACTGTAGTTTGTTCCCTTCCTTAATTTGGTTAAGTGGGATAATTTACAACTTCTTGGTTATAAAGTTATCGCAGTAGAGCTTGCTTGGACACCACCTTACAAAAGGTTATACATTAAGGGAGAATTACCTATAGTGAAGTTACCCTGCTTCCAGGGAGATTAGAAGCCAAGATGTTAAGGATCTTTGGAGCTCAGCAACACAATTCTGGAATGTTCCAGATGGGACGTCTCATTGACACAGTATTCATTATTCATAGTATTGGATGTGAGACTTTAAAGCTTACTTTTCAGGGGAAAGTCCGTGTTTACATTTTTTCATATCAAACTTCTTTTCGCATAAAGTGTTCTCAACATGATTTATGCAAACAACAAAGTTCTGTCTTCACTTGTTGAGAAGCAGTCGCTCATTTAAACTTACTCCCTCCGTTCTGGTTGTCCACCTTTTTGCTTGGTCTCACTGGTTCAGACTTCAGAGGAGCAGCCATTTTATCATGGTTGCCCTTAAACTATCCATTTGTTACTCTACCATAATGTTTCGTCAGGTGAAAAATATTGCATGGATGATTTTGCTAGGCGAAAGGTCATTCCTCTTATAAAAGAAAATGAAAATGTTCTATGTTCTTTGTTCGGCCAAAAGATGAAAGCATCTAAAAGAAAGTGAGGAATGGAAAGAATAAAACTAATAATGGTTGTAAATCTTGGTGAGGCTGTAGATACCTGGTAAAATTTTCAAGGTGCGAGTAAGTAAGCTAGCGAAGACACCACAGTTAACAAAAACAAATAAATGTAATTAGACTATCACTAATTTATCTTATCCAACCAAGAAATAAATAAAACTAATAACTGTTGAAATGATTATTCCCAGTGAGAATGAGAGATCCGAAGGGAAGGAAAAAAGAATTGGAGGGGAGATTCCATTCAGTGCCATGAAGGGTAAATGTATAACAGTGTCAATTTTTGGTCAGTAGACACTGTTTTAGGAGATTGGAAAAAAGGTTCAGGGGCTAATCAGTTGGTTTGGAGTAGGTAGTAGGTACATTTTCTTCTTTTAAAAAAGTACCATGCATTCAGGCTAAACCAAGACTTTCACTTTAGGTAAATATTTTTCAGAGCACTGTTTGATTTTCTCTTTGATGGAAGAGATTGAGCGTCAAAGGAATCTTGCGCAAAATAGGAGTCAATGCATAGTGTGTTGGTGAATATATTAGATTACCATAAAAAAAAACCAATAGTCTTATTGGTGGGGATAAAAAGCAAGCAAGACAATAGATTTAAGTGTGTGCTCATCATGCATGATTGGATTTTGGTTTGCCAAACTGTTTAGGGTGAAGAAATAACAAATCCATTTATTTCTACGATTTGCAAGTTCAAGCATATGCATCCTTTATTATTATTTTTTTAAACCTTGTGATTTTATTACAGGTCTTTAATTGCATCTTGTCTTCTTTTGCAGAAATTCTTGGATAGTTCCAAGCTAAAACGACACTTTCTTATTCACACTGGAGAAAGAGACTATGTGTGTCCACATGAAGGCTGTGGTAAGGTAATAAATCCATCTGCTATCCAAATACTTCTCCCAGCATACATTTTGTTTCTATTGCAACTGTTATAATAATAATGCTGTCCTTTTCTCTTGTATATAAATGAGACGTGTACATTCTCTTAACTTTCATATATTGGTGATATCTGTGACAATTTTCAATACCAATATTAGTTATAATTGTATTGGGAATTTTGGAAGAAACTATGGACAACTTCTCGATGATTTGAGAATATGTCTTCTGTAAGAACGTCAACATTGGCTATGTGGATGTTAGATGCGTATTGGAAATTGGAATGTCAAGAATGGTTCCTAAGTACTGCAAGTGCTCAATGTTTGTCTGAAATGGAAAACAGTACTTCCTTCGTTCTAGTTTGTGGCCCTATTTCTTTTTTAGTTTGTTCCATAAAGAATGGTCTCTTTCTAAATTTGGAAATAATTTAATTGGCCAAATACACAAGCAGCTCCCTAAACTTATCCAATGCTTTCAATACGACACCTGAACCAAGACCAGTACCTATGAATGCCTATACTACTCAAGATACGTACCTATTGATTGCAAAATGCTAACATGGCTAAAAAGTGTTATTCACTTCCTTGGGCATGTGTATCAATCCCAAAATAATTGTTATATTCCTTTTCATTAAAAATTCACATTTTTCTCTCCATTGCCGCCACCATCCACCATTGCTTCCACCACTTCTTTTTCTGCCGCCGCTGCCCTTCTCCTCCTTCCACCATTGCTCCACCAGTGCACCTTCAAATTACCACTCGAAGAATCACCTTCAACCTCTGAAATCACCTCCCTCACCTTCATCCTTAGCGACTCATCATCATTTAAACAGCTACCAAAAATTCCTTCCTGTCATCTGAAACCACACCCACAACCACCAAAGCCCACCTAAAAAAACAAAATAACCAGTTTCCTTCCATGAACTGTGGAATCTCCAGACACAAACATTTACACGAACACTTGCAGTGCACATACTATGCACTCACTCTCAGTCACACCACTGCTGCCATACCATACACGCCTCTTAACCTTCACCCCTCCCAGTTTCATGCCATTTCCTCATCTTTAAAACCACCATATGATACCACCCTTTGTTCCCTAGCAGCTGCACACATGGACGTAGTAGAATTCATTCAATCAGGGATAATCTCCATGTTATCACCATCACCGACAGCAGGTAATTGGGGGGATGGGGGGGGGGGGGTTCTGAGGGGAAGGAAGAAGAGAAGGGGGAGGAGACAAGTCCGGGGAAAGACATTGGGGTGGGGAATTGAAGGAGAAATAAGTGGGTGGGGGGACAACAGGAGGGGCGTGTGGTGATTGGTATCGATTGGAGGGGGTTTCTGATGTGGAAGAATCTATGAGATTCATAGTTGCATTACTTGTAGCTTCCTTTCTATGGGTACATAGGATCAAACGTAAAGCAATGCTCTCTTGGCAGAGTTATGTTAAATAACCATACAAATGTTATTGCTTGTTTAAGACCACGAGTTCCAAAAGTTTCCACTTATTTCTTTAATTTTGTGCCCAGTCAAATAGGTTAACAAACATTGAAACATAGTAATTGCGTGAAGAACAAATACAGCTTGTGCGATTGGGCACTTTCCTGGCAACTCTGTTCTCTCTGCCAAAAGAATAAAAGAAAAGGAAAATAATTAAATTAAAGAGAAGAAACCCCAGAATACCAAAAACAAAATGGGAACTTCCTTTATGCAAAAGGTGCAAGGTTTGCTTCTCATCAGGCGCCCTATGATGGGCTTCTTTGTCCCACAACTCCAAAGATAAAACAAAGAAAAGAAAAGAAAGGGACAAGAAACAAAAAAAAAATAGAAGTGTTTGTATAACCCTTATTTATGTTTCCAAATTCTTTCTGGCTCAGGGCTTTGGTTTAGTGATAAGAGAGCGACACTTGTAGTGTGAATTAGGCCCACATCCTGAGTTTGAACCCAGTCGTAGATAATTTGATAAAAGCTTGTTATTTAAATGGAAAGGGCTAGAGTATGGGCCTATTATCCACTAAGTTTAAGCTGTTCGTCAGGTGGCCCTTGGGATTTCTTGGCCATCAAAAAATGTTCCCAAATATTTTCTGTTACTTTAGCCATAGGAATTCTATCTTGTTTCTTGTTCTGTTCGGGATAAATGTCATGGAACACAGACATTGCTTGTATGTATATGTTTTTATGACACTTCTGCTTCTTATTGTGGTTCAATTTCACAGATTCCTTTTGAAATCAATGCAGGCATTCTCACTGGATTTTAACTTAAGATCACACATGAAAACACACTCCCAGGAGAACTATCATATTTGCCCGTATCCAGAATGTGGAAAGCGATATGCACATGAGTACAAGCTTAAAAATCATATTTCATCTACTCACCAGAAGGTTTGTGATTTGCTCTATCGTCCTTGTCTTGACCAGGATATACTTATACAGACTTTATGAACTTTTTCCATCTTTGATCACAAACAAGGTGCTAAATGTCCTAAATGTTTCATCAATAATCACTTGCTGTTTCTTCCCAACTTTGGATCGTTAACATTATTTAAGCCAATTCTTCTTTGTAAACCAGACTGAACTTTAATTTCATATGCACATGTTTACTTTCTTTGAACATATTTATCTTTAAGATTTTCCTTGCCCATAAATTCCAATATGCTGGAGGAGCTCTGTTAGATATCTTTATTGGTATTTTTTATGTTGCATACCCATTACTCCTTCATTTCCTTGTTAAAGATGTTTTAAAGGAAAAAGATGCTATTCAATGTGTAATCTTTTCCTCAAAATAAATGTGGATAGAATTTTTATCGCCTGTTAATGGTTGGCTTCAGTCACTTTTAAGTATACTGCGTAGAATAGAAGTTGACTTCATAACCAGAACTCAGCATAAAAGACAGTAGTTATGTAGGGATTAATGTCCTGTATCACTTCATGCATCACTAAATTTATCACTTTTTGATGTTTGTGTTGACAGTTTCATCTAATGATTCACTAGATGTTTAAGCTAATAGTTTCCTGTAGACATGTCACATGTGGATGCACCTTGTTTTTCATCTTGTAACGTAGCACTTGAAGCTGGATTTGCTTATTAAATCTTTTCATTATGTAGAACAACACACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATA</genome_strand>
        <mrna_strand>GCAACTGGTGGGAAGTGCTACGTCTTAAAGTGGGTGAATG.........................................................................................................................................................................AGGCCACATTAAAAGCTCTGAGGGAGAAGCCAAAAGAGGCAGGAGTACCTGTGTCAGAACCAGAGCCAACTACTGAAGTTCTTTTTCTTTGTAGCTATGAAGGTTGTGGAAAGACATTTATTGATGCTGGGGCCTTGAGGAAGCATTCTCACATCCACGGGGAGAGGCAGTATGTATGCCACTATGAGGGTTGTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCTTGGATAGTTCCAAGCTAAAACGACACTTTCTTATTCACACTGGAGAAAGAGACTATGTGTGTCCACATGAAGGCTGTGGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTCACTGGATTTTAACTTAAGATCACACATGAAAACACACTCCCAGGAGAACTATCATATTTGCCCGTATCCAGAATGTGGAAAGCGATATGCACATGAGTACAAGCTTAAAAATCATATTTCATCTACTCACCAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCCAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAATGCTGCTCAAGCCAATCTAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455533" ref_strand="+" ref_description="SGN-E455533 [cSTS-26-H1]">
      <seq>aataaatccccccgcaaacattgaactcaaaccctaaccctaatcgtgaaaattcatctcataaattgcagttcaccggttgacgaggagatggaaactcatatgtctcatcatcagtatgaaagacgacccatatacaagtccaaagctcctgcttccaaatggttcaaggaatgggtcccacaagatgttgtagcaactggtgggaagtgctacatcttaaagtgggtgaatgaggccacattaaaatccctgaatgagaagccaaaagaggcaggagcacctgtgtcagaaccagagccaactactgaagttctttttctttgtagctatgaaggttgtggaaagacatttattgatgctggggccttgaggaagcattctcacatccacggggagaggcagtatgtatgccactatgagggttgtggaaagaaatttttggatagttccaagctaaaacgacacttccttattcacaccggagaaagagactatgtatgtccacatgaaggctgtggtaaggcattctctttggattttaacttaagatcacacatgaaaacacactcccaggagaactatcatatctgcccgtatccagaatgtggaaagcgatatgcacatgagtacaaacttaaaaatcatatttcatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94851" stop="87866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94551" g_stop="94373" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94372" i_stop="93148" i_length="1225">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93147" g_stop="93089" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="235" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93088" i_stop="92920" i_length="169">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92919" g_stop="92720" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="435" r_length="200" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92719" i_stop="90641" i_length="2079">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90640" g_stop="90551" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="525" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90550" i_stop="88301" i_length="2250">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88300" g_stop="88166" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="660" r_length="135" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E455533" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94551" e_stop="94373"/>
          <exon e_start="93147" e_stop="93089"/>
          <exon e_start="92919" e_stop="92720"/>
          <exon e_start="90640" e_stop="90551"/>
          <exon e_start="88300" e_stop="88166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATTTCCCCGCAAACATTGAACTCAAACCCTAACCCTAATCGTGAAAATTCATCTAATAAATTGCAGTTCACCGGTTGACGAGGAGATGGAAACTCACATGTCTCATCATCATCAGTATGAAAGACGACCCATATACAAGTCCAAAGCTCCTGCTTCCAAATGGTTTAAGGAATGGTAAGCGAAACAGCTCAAAATTATTCTCAATTCCGTATTAATCACTTGTTAAATTATGCTTTTATTCCGTATGGAAAAAGATGTTACTTATAAGCATGGGATAGAAGAGGCGAGAAGGATTTCTGTTGGTTTAAGGACCGGAAGAGCAGGATAGATACAGGAGAATTAGTTGTCTGATTCCAATTCACTACTCGAAGCTACTTTCTAGTGCTATATCGGAGGAGCGGTGCACAAGCAATTATAACTATGAATTGAATTTGCTTCTTGATTTCTTTCTGCCAATTATAATTGGAGACTTCATAGGATGGGCATTTGTTTGTAACTTGATGGGGCATGATTTGCACTAATTTTTATCAAGAAATTTTTCTGAATGAACGGGATTTGATTAAAAGGAGTCATATGTGGGTCTGATTCATGTGCGTTTTTTGGAGTTCTGGGGTAGTTTTTATCATGTTTAGGTTTTGTTAGATTGACTGTCTGTCTTATTGGGTGTAAATTTGACTGTGATGGTGCATCTATGGAGGAAAATGGTTATAGTTTTATGATTATCTAAGGATAGTATCAAGCAACTAAGCGTCAATCTCAAATTAGTTCAATCGGCAGCATGAATCTGTTATATACTCAACTCTATTAGGTCTCAGTATTCATCATATTTGGACAATTTATGTTACCGTTAACCTACCGTAACACTCCTCCATTATCTGGATATTGGATGGGCTAATTCGTTAAGAAGCTCACATGGGAAAAATTGTAAAGATGCTAAAAGGGAAGTATTTCTCGTCAAGAGAAAGATGATGTGATTCAGTATGAATCAGTTGTATTGCAACCTCGAATTTGCAACTTCTTTGCTTGATATTTTTCATCAGGGGAGGGTTAGGACCTAGAATTCAGCCACTAAAAGCTGCAAAAGAGATCACTGGACAAATTGCTTCTTTAGCTCCAAGCAAACTTGTCAGTTCACAATCATGTTAGGGAGAACTGGAGGAGTGATTACAATAATACATTAGAAAATCGCATTGTATCATGTTCCTTGTATTGCTAATGTTCTATAACTTGCATGAACTGTTAGTAGGTTAGATACATGTTTGATTTGTATAACCGTTCCTTTAATCATCTCAGAGGATCAGTCATTAGTCACTGACTGATGAAAGTATGTTTAGCCATGTATTTTCATTATAATTCCTACCATGTTTTAATTCTTTTACTAAAATCAATTTTATCCCAGGGTCCCACAAGATGTTGTAGCAACTGGTGGGAAGTGCTACGTCTTAAAGTGGGTGAATGGTAAGTTCTGAATTCTGCTTCAGTACATCTTTTGGATAGTCTTGTGTTGATTAATCTTATATTCTTTATTTTTCCGTATCTTTTCTTGATTTTCAAATGCATATGCTGTGGCTTTTGGGTTGTACATTGAATTTGACCTTATACTCCTCCTTTCTATTTTGTTTATCAGAGGCCACATTAAAAGCTCTGAGGGAGAAGCCAAAAGAGGCAGGAGTACCTGTGTCAGAACCAGAGCCAACTACTGAAGTTCTTTTTCTTTGTAGCTATGAAGGTTGTGGAAAGACATTTATTGATGCTGGGGCCTTGAGGAAGCATTCTCACATCCACGGGGAGAGGCAGTATGTATGCCACTATGAGGGTTGTGGAAAGGTGAGTTTTTGTTGTCTTTGTATTGAGACTGCACTAAATGCTTGATTATTTCATTGTATTGATTCTACCATCATTTTACTTATTTTGCTTTCATGATACTTCCCTCCGGACTCTGGCAGGGTTTGATTGGGGGAGGAAGTGATGGGCATATGGAATTCGTTCTTTTTCGCAATTATATTACCTTCGTTTATGTAGTGCTTCTTTCTAGAAATCTGCTTTTCAAGATACCGTAGGTGTTCCTTGAGCTCATAAGATACTTCCGTAATAAATATTGATTGGCTGAGGAGTTGATTTAGGTTGTATTACTTATCAAACAAACGTTCACTGAAGTTGTATTTCCGGAAGTATTGTTTCATTTACTGCTGAACCGTCTTCAACCATTTTGAGCCTCAGATTGTGGGAAAAAAGAACCTCTCAATCTTATACAAGGAAGAGGAAAGGTTTGCGTATGGTGAAAAAAAGAAAAATCAGAGTTAGGTTTGTACAACAACTACTACTACACTTCAATCTCAAGCATTACTCATTATCAAGTAGGGAATTGAAAAATGTCAAAGATCATTCTTGAGATTTTGAGTTATCTGTCAGTGAAAGGAACGAAGTTTCAAAAAAAATAAAAAATTCCCATAACTGTAGTTTGTTCCCTTCCTTAATTTGGTTAAGTGGGATAATTTACAACTTCTTGGTTATAAAGTTATCGCAGTAGAGCTTGCTTGGACACCACCTTACAAAAGGTTATACATTAAGGGAGAATTACCTATAGTGAAGTTACCCTGCTTCCAGGGAGATTAGAAGCCAAGATGTTAAGGATCTTTGGAGCTCAGCAACACAATTCTGGAATGTTCCAGATGGGACGTCTCATTGACACAGTATTCATTATTCATAGTATTGGATGTGAGACTTTAAAGCTTACTTTTCAGGGGAAAGTCCGTGTTTACATTTTTTCATATCAAACTTCTTTTCGCATAAAGTGTTCTCAACATGATTTATGCAAACAACAAAGTTCTGTCTTCACTTGTTGAGAAGCAGTCGCTCATTTAAACTTACTCCCTCCGTTCTGGTTGTCCACCTTTTTGCTTGGTCTCACTGGTTCAGACTTCAGAGGAGCAGCCATTTTATCATGGTTGCCCTTAAACTATCCATTTGTTACTCTACCATAATGTTTCGTCAGGTGAAAAATATTGCATGGATGATTTTGCTAGGCGAAAGGTCATTCCTCTTATAAAAGAAAATGAAAATGTTCTATGTTCTTTGTTCGGCCAAAAGATGAAAGCATCTAAAAGAAAGTGAGGAATGGAAAGAATAAAACTAATAATGGTTGTAAATCTTGGTGAGGCTGTAGATACCTGGTAAAATTTTCAAGGTGCGAGTAAGTAAGCTAGCGAAGACACCACAGTTAACAAAAACAAATAAATGTAATTAGACTATCACTAATTTATCTTATCCAACCAAGAAATAAATAAAACTAATAACTGTTGAAATGATTATTCCCAGTGAGAATGAGAGATCCGAAGGGAAGGAAAAAAGAATTGGAGGGGAGATTCCATTCAGTGCCATGAAGGGTAAATGTATAACAGTGTCAATTTTTGGTCAGTAGACACTGTTTTAGGAGATTGGAAAAAAGGTTCAGGGGCTAATCAGTTGGTTTGGAGTAGGTAGTAGGTACATTTTCTTCTTTTAAAAAAGTACCATGCATTCAGGCTAAACCAAGACTTTCACTTTAGGTAAATATTTTTCAGAGCACTGTTTGATTTTCTCTTTGATGGAAGAGATTGAGCGTCAAAGGAATCTTGCGCAAAATAGGAGTCAATGCATAGTGTGTTGGTGAATATATTAGATTACCATAAAAAAAAACCAATAGTCTTATTGGTGGGGATAAAAAGCAAGCAAGACAATAGATTTAAGTGTGTGCTCATCATGCATGATTGGATTTTGGTTTGCCAAACTGTTTAGGGTGAAGAAATAACAAATCCATTTATTTCTACGATTTGCAAGTTCAAGCATATGCATCCTTTATTATTATTTTTTTAAACCTTGTGATTTTATTACAGGTCTTTAATTGCATCTTGTCTTCTTTTGCAGAAATTCTTGGATAGTTCCAAGCTAAAACGACACTTTCTTATTCACACTGGAGAAAGAGACTATGTGTGTCCACATGAAGGCTGTGGTAAGGTAATAAATCCATCTGCTATCCAAATACTTCTCCCAGCATACATTTTGTTTCTATTGCAACTGTTATAATAATAATGCTGTCCTTTTCTCTTGTATATAAATGAGACGTGTACATTCTCTTAACTTTCATATATTGGTGATATCTGTGACAATTTTCAATACCAATATTAGTTATAATTGTATTGGGAATTTTGGAAGAAACTATGGACAACTTCTCGATGATTTGAGAATATGTCTTCTGTAAGAACGTCAACATTGGCTATGTGGATGTTAGATGCGTATTGGAAATTGGAATGTCAAGAATGGTTCCTAAGTACTGCAAGTGCTCAATGTTTGTCTGAAATGGAAAACAGTACTTCCTTCGTTCTAGTTTGTGGCCCTATTTCTTTTTTAGTTTGTTCCATAAAGAATGGTCTCTTTCTAAATTTGGAAATAATTTAATTGGCCAAATACACAAGCAGCTCCCTAAACTTATCCAATGCTTTCAATACGACACCTGAACCAAGACCAGTACCTATGAATGCCTATACTACTCAAGATACGTACCTATTGATTGCAAAATGCTAACATGGCTAAAAAGTGTTATTCACTTCCTTGGGCATGTGTATCAATCCCAAAATAATTGTTATATTCCTTTTCATTAAAAATTCACATTTTTCTCTCCATTGCCGCCACCATCCACCATTGCTTCCACCACTTCTTTTTCTGCCGCCGCTGCCCTTCTCCTCCTTCCACCATTGCTCCACCAGTGCACCTTCAAATTACCACTCGAAGAATCACCTTCAACCTCTGAAATCACCTCCCTCACCTTCATCCTTAGCGACTCATCATCATTTAAACAGCTACCAAAAATTCCTTCCTGTCATCTGAAACCACACCCACAACCACCAAAGCCCACCTAAAAAAACAAAATAACCAGTTTCCTTCCATGAACTGTGGAATCTCCAGACACAAACATTTACACGAACACTTGCAGTGCACATACTATGCACTCACTCTCAGTCACACCACTGCTGCCATACCATACACGCCTCTTAACCTTCACCCCTCCCAGTTTCATGCCATTTCCTCATCTTTAAAACCACCATATGATACCACCCTTTGTTCCCTAGCAGCTGCACACATGGACGTAGTAGAATTCATTCAATCAGGGATAATCTCCATGTTATCACCATCACCGACAGCAGGTAATTGGGGGGATGGGGGGGGGGGGGTTCTGAGGGGAAGGAAGAAGAGAAGGGGGAGGAGACAAGTCCGGGGAAAGACATTGGGGTGGGGAATTGAAGGAGAAATAAGTGGGTGGGGGGACAACAGGAGGGGCGTGTGGTGATTGGTATCGATTGGAGGGGGTTTCTGATGTGGAAGAATCTATGAGATTCATAGTTGCATTACTTGTAGCTTCCTTTCTATGGGTACATAGGATCAAACGTAAAGCAATGCTCTCTTGGCAGAGTTATGTTAAATAACCATACAAATGTTATTGCTTGTTTAAGACCACGAGTTCCAAAAGTTTCCACTTATTTCTTTAATTTTGTGCCCAGTCAAATAGGTTAACAAACATTGAAACATAGTAATTGCGTGAAGAACAAATACAGCTTGTGCGATTGGGCACTTTCCTGGCAACTCTGTTCTCTCTGCCAAAAGAATAAAAGAAAAGGAAAATAATTAAATTAAAGAGAAGAAACCCCAGAATACCAAAAACAAAATGGGAACTTCCTTTATGCAAAAGGTGCAAGGTTTGCTTCTCATCAGGCGCCCTATGATGGGCTTCTTTGTCCCACAACTCCAAAGATAAAACAAAGAAAAGAAAAGAAAGGGACAAGAAACAAAAAAAAAATAGAAGTGTTTGTATAACCCTTATTTATGTTTCCAAATTCTTTCTGGCTCAGGGCTTTGGTTTAGTGATAAGAGAGCGACACTTGTAGTGTGAATTAGGCCCACATCCTGAGTTTGAACCCAGTCGTAGATAATTTGATAAAAGCTTGTTATTTAAATGGAAAGGGCTAGAGTATGGGCCTATTATCCACTAAGTTTAAGCTGTTCGTCAGGTGGCCCTTGGGATTTCTTGGCCATCAAAAAATGTTCCCAAATATTTTCTGTTACTTTAGCCATAGGAATTCTATCTTGTTTCTTGTTCTGTTCGGGATAAATGTCATGGAACACAGACATTGCTTGTATGTATATGTTTTTATGACACTTCTGCTTCTTATTGTGGTTCAATTTCACAGATTCCTTTTGAAATCAATGCAGGCATTCTCACTGGATTTTAACTTAAGATCACACATGAAAACACACTCCCAGGAGAACTATCATATTTGCCCGTATCCAGAATGTGGAAAGCGATATGCACATGAGTACAAGCTTAAAAATCATATTTCATCTACT</genome_strand>
        <mrna_strand>AATAAATCCCCCCGCAAACATTGAACTCAAACCCTAACCCTAATCGTGAAAATTCATCTCATAAATTGCAGTTCACCGGTTGACGAGGAGATGGAAACTCATATGTCTCATCATC---AGTATGAAAGACGACCCATATACAAGTCCAAAGCTCCTGCTTCCAAATGGTTCAAGGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCACAAGATGTTGTAGCAACTGGTGGGAAGTGCTACATCTTAAAGTGGGTGAATG.........................................................................................................................................................................AGGCCACATTAAAATCCCTGAATGAGAAGCCAAAAGAGGCAGGAGCACCTGTGTCAGAACCAGAGCCAACTACTGAAGTTCTTTTTCTTTGTAGCTATGAAGGTTGTGGAAAGACATTTATTGATGCTGGGGCCTTGAGGAAGCATTCTCACATCCACGGGGAGAGGCAGTATGTATGCCACTATGAGGGTTGTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTTTGGATAGTTCCAAGCTAAAACGACACTTCCTTATTCACACCGGAGAAAGAGACTATGTATGTCCACATGAAGGCTGTGGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTCTTTGGATTTTAACTTAAGATCACACATGAAAACACACTCCCAGGAGAACTATCATATCTGCCCGTATCCAGAATGTGGAAAGCGATATGCACATGAGTACAAACTTAAAAATCATATTTCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747065" ref_strand="+" ref_description="SGN-E747065 [GI|66765938]">
      <seq>tgttgtaatatgttttctttcagagctatggtattttaggtccatacatattagtaactccagtttatttgtgagggaaaaaaatgtttatgtcataactatatctctttgcattgtcaaggctataagtaaattagttgcgaaaacagaatggtatagtgctgctgaagatataagatgcagattttgaagtgaagggcaattgctatatagagctagaagctttgatccatttgttcttctattcttgtttttatcttattttgagtaagcgataacattcgatgtcctggaggctgtttgacgaagcttcactagaatatatcgttagttaaccaacattttattgaatttggtcttttgatgggctgctttccctcaaaaatctgccgattcagtacccctggttacgaggatccaacactgctggctgctgagaccgcttttacggtgagtgaagttgaagcattatatgagctgttcaagaaaataagcagctctataattgatgatggactaattcacaaggaagaatttcagctggcaattttcaagaaccaaaacaggagagatctttttgcagacaggatttttgatctatttgatttcaagcgcaacggagtgattggatttggagaatttgtcagatcattgagtgtattccacccaaatgcaccagtagcagataaaattgcatttgcattccgattatatgatctaaggcagactggttatattgagagagaagagctgaaagagatggttttggcgctgctgaatgagtcagacttgattctttcggatgatatagttgaaatgattgtagataagacatttgatgaagcagataaaaagagtgacgggaagatagatgaagaagaatggaaggagtttgtttcaatgaatccctctcttctaaagaatatgacccttccatatctcaaggatataactttagcatttcctagctttgtgatgaactctgaggtggaagattcggaagtctagactcatgcttttagcatataacacgcgtagttgaaactcccacgtatcaggtaatctcttccgaactagtgatgcaacagaaatgcaaaagagtcgagattaatcggattttgcattgaaattttggaagttggctaccccagattgatgcagaaaatcagttcttttgccagctccaataggcattagcaagatgtactacttttaaagtatctagctagtctgttggagttagatatcaaggtagtattgaaagtcgaagttttgttcaaatgtaataaacaaacctgaatttcaaatttgaaatccaaattgccatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100260" stop="103780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100560" g_stop="100851" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100852" i_stop="101014" i_length="163">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.575" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101015" g_stop="101167" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="445" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101168" i_stop="101796" i_length="629">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101797" g_stop="101879" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="528" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102036" g_stop="102095" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="588" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102277" g_stop="102385" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="697" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102494" g_stop="102546" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="750" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102640" g_stop="102720" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="831" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="102817" g_stop="102929" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="944" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="103097" g_stop="103481" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1329" r_length="385" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E747065" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100560" e_stop="100851"/>
          <exon e_start="101015" e_stop="101167"/>
          <exon e_start="101797" e_stop="101879"/>
          <exon e_start="102036" e_stop="102095"/>
          <exon e_start="102277" e_stop="102385"/>
          <exon e_start="102494" e_stop="102546"/>
          <exon e_start="102640" e_stop="102720"/>
          <exon e_start="102817" e_stop="102929"/>
          <exon e_start="103097" e_stop="103481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTAATATGTTTTCTTTCAGAGCTATGGTATTTTAGGTCCATACATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTTGTGAGTATATATGCATATCCTTACCAAATTGGTATTTTGTTTCGATCAGTTGTCTTTATTTCTGTTTTTTTCCCCATCCTCAAGTTCTGGATCTTCAAAGTCATTCAGACACCAAGAGGGCCTATTGCTGAAGGAAAATACTAGAGGGTAATAAATTAATATGATTTTTTTTTCTACACAGCGAGGAGGTCTCAAACTCCTTTAGTGCATATGGATGATGTTAAAGAATTTTTCACATATGTGTTATAACTTATAATAGAAGAAAATGAAGGAACAACGGAATAGTATATGGTTGAGCTTCAGAATGAAAATTTCCTCCTCGATCTAGCTTAGATCATAGTACGAGTAACCAAACAACCAAAAATTTTCCATATCCTGAACCAATGAGATAGTTGAGGGTAGTTTTAGTACTCAACGAAAAGCCTTTAAATTGTCTCCTGACAAAATTTTATATTATGAATGTGACGACTGAACTAGTAGTTCAGTGTTCTGGCCTCCACTGCAGGCATGTAAGTAAACAAGTGCTATAAACATGTATAAAGTTATTTAATCGACAGCAAGTTATGTCTGCTTTTATTCAGTCCAAAACAGCAAATTGAGCATTCTGTTCAACGATTTATGTATTGCAGTTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAGGTATAATTTCTCTACTACTTGAATAACCGTTAAGCCATATATCGTTTATGTGTTCTTGGAGTTCCACATTTATAATTTACTAGTATTGAACTCTTTGATTACACGTAGAATATGTTATAGAGTTTCCTATTAACTTCTCTGGCATTCCATCATTAGGAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGGGTATGTTTTGTTGATTAACTTTTTCTTTGAAATGGATTCTCCATATTAATGATTAAGCATTACAACTCTTATGCTTTGGATCAATCGTTTCTGTTTCATTTGAAGAACGACCATTCGTCTGGCTTTAATCTGACTTATATTTGCTGAGTTTTTCTTTTCCACTCTTTCTGGAATCATGCAGATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCATGTAGGTGGCTTATATTCAACTATCTACAGCTTTAGAATTCTAAACATGATCTTTTTAACCTCTTCTGCAACATTATTAATGTGTACACACGGTGGATTCTTTCTGCAGTTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAGGTAGGTGTTGCAACCGTACTTATACTGATTTACTCTATGCTCCCTTGTCATGAACATTAGTCATATTCGCTGCTTGCTTGGTTTTTATTACAGCTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAGGTTGACTCCTCGACTCCATGATTGTCTGCTAATATGTTTGATTGTGTGCCTTTGTGTTATTCATATTGACCACCTAGTTTTATCTTGTTGCACCAGACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAAGTAAGTTATAACATCGAGCTGCATCAAGGCAGCTTGTGTGTTTGCGTTTATCTTTTCACCATTCCTCTGGAAATGTTCAAAAATCAAGCTCATTGGCCTTAAATCTACTATCAAATTTGTGTGCTATAAAGCAACTTTTGAGTGTTGTTTGTTACCTTTCATTATAGGGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACATGAATTTCAAATTTGAAATCCAAATTGCAATGA</genome_strand>
        <mrna_strand>TGTTGTAATATGTTTTCTTTCAGAGCTATGGTATTTTAGGTCCATACATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTG...................................................................................................................................................................GAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAG............................................................................................................................................................GAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGG.....................................................................................................................................................................................ATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT............................................................................................................TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG.............................................................................................CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG................................................................................................ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAA.......................................................................................................................................................................GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACCCCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACCTGAATTTCAAATTTGAAATCCAAATTGCCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301770" ref_strand="+" ref_description="SGN-E301770 [cLEW-25-C17]">
      <seq>tattagtaactccagtttatttgtgagggaaaaaaatgtttatgtcataactatatctctttgcattgtcaaggctataagtaaattagttgcgaaaacagaatggtatagtgctgctgaagatataagatgcagattttgaagtgaagggcaattgctatatagagctagaagctttgatccatttgttcttctattcttgtttttatcttattttgagtaagcgataacattcgatgtcctggtgattaccttgaacctgataaagtagcacaaatcagtatttcttctttctgctatcttcctactgtttcattttgactttgacataatattattatgcatgactcgtttgctcaattccctgatgatgaggttgaagttgttctcttgtatttgattgtcaggaggctgtttgacgaagcttcactagaatatatcgttagttaaccaacattttattgaatttggtcttttgatgggctgctttccctcaaaaatctgccgattcagtacccctggttacgaggatccaacactgctggctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100308" stop="101458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100608" g_stop="101158" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E301770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100608" e_stop="101158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTG</genome_strand>
        <mrna_strand>TATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299593" ref_strand="+" ref_description="SGN-E299593 [cLEW-20-I19]">
      <seq>tttgtgagggaaaaaaatgtttatgtcataactatatctctttgcattgtcaaggctataagtaaattagttgcgaaaacagaatggtatagtgctgctgaagatataagatgcagattttgaagtgaagggcaattgctatatagagctagaagctttgatccatttgttcttctattcttgtttttatcttattttgagtaagcgataacattcgatgtcctggtgattaccttgaacctgataaagtagcacaaatcagtatttcttctttctgctatcttcctactgtttcattttgactttgacataatattattatgcatgactcgtttgctcaattccctgatgatgaggttgaagttgttctcttgtatttgattgtcaggaggctgtttgacgaagcttcactagaatatatcgttagttaaccaacattttattgaatttggtcttttgatgggctgctttccctcaaaaatctgccgattcagtacccctggttacgaggatccaacactgctggctgctgagaccgcttttacggtgagtgaagttgaagcattatatgagctgttcaagaaaataagcagctctataattgatgatggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100327" stop="102169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100627" g_stop="101167" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101168" i_stop="101796" i_length="629">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101797" g_stop="101869" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="614" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E299593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100627" e_stop="101167"/>
          <exon e_start="101797" e_stop="101869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTTGTGAGTATATATGCATATCCTTACCAAATTGGTATTTTGTTTCGATCAGTTGTCTTTATTTCTGTTTTTTTCCCCATCCTCAAGTTCTGGATCTTCAAAGTCATTCAGACACCAAGAGGGCCTATTGCTGAAGGAAAATACTAGAGGGTAATAAATTAATATGATTTTTTTTTCTACACAGCGAGGAGGTCTCAAACTCCTTTAGTGCATATGGATGATGTTAAAGAATTTTTCACATATGTGTTATAACTTATAATAGAAGAAAATGAAGGAACAACGGAATAGTATATGGTTGAGCTTCAGAATGAAAATTTCCTCCTCGATCTAGCTTAGATCATAGTACGAGTAACCAAACAACCAAAAATTTTCCATATCCTGAACCAATGAGATAGTTGAGGGTAGTTTTAGTACTCAACGAAAAGCCTTTAAATTGTCTCCTGACAAAATTTTATATTATGAATGTGACGACTGAACTAGTAGTTCAGTGTTCTGGCCTCCACTGCAGGCATGTAAGTAAACAAGTGCTATAAACATGTATAAAGTTATTTAATCGACAGCAAGTTATGTCTGCTTTTATTCAGTCCAAAACAGCAAATTGAGCATTCTGTTCAACGATTTATGTATTGCAGTTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACT</genome_strand>
        <mrna_strand>TTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545013" ref_strand="+" ref_description="SGN-E545013 [TUS-67-K7]">
      <seq>caacactgctggctgctgagaccgcttttacggtgagtgaagttgaagcattatatgagctgttcaagaaaataagcagctctataattgatgatggactaattcacaaggaagaatttcagctggcaattttcaagaaccaaaacaggagagatctttttgcagacaggatttttgatctatttgatttcaagcgcaacggagtgattggatttggagaatttgtcagatcattgagtgtattccacccaaatgcaccagtagcagataaaattgcatttgcattccgattatatgatctaaggcagactggttatattgagagagaagagctgaaagagatggttttggcgctgctgaatgagtcagacttgattctttcggatgatatagttgaaatgattgtagataagacatttgatgaagcagataaaaagagtgacgggaagatagatgaagaagaatggaaggagtttgtttcaatgaatccctctcttctaaagaatatgacccttccatatctcaaggatataactttagcatttcctagctttgtgatgaactctgaggtggaagattcggaagtctagactcatgcttttagcatataacacgcgtagttgaaactcccacgtatcaggtaatctcttccgaactagtgatgcaacagaaatgcaaaagagtcgagattaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101484" stop="103565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101797" g_stop="101879" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="110" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102036" g_stop="102095" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="170" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102277" g_stop="102385" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="279" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102494" g_stop="102546" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="332" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102640" g_stop="102720" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="413" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102817" g_stop="102929" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="526" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103097" g_stop="103265" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="695" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E545013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101797" e_stop="101879"/>
          <exon e_start="102036" e_stop="102095"/>
          <exon e_start="102277" e_stop="102385"/>
          <exon e_start="102494" e_stop="102546"/>
          <exon e_start="102640" e_stop="102720"/>
          <exon e_start="102817" e_stop="102929"/>
          <exon e_start="103097" e_stop="103265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAGGTATAATTTCTCTACTACTTGAATAACCGTTAAGCCATATATCGTTTATGTGTTCTTGGAGTTCCACATTTATAATTTACTAGTATTGAACTCTTTGATTACACGTAGAATATGTTATAGAGTTTCCTATTAACTTCTCTGGCATTCCATCATTAGGAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGGGTATGTTTTGTTGATTAACTTTTTCTTTGAAATGGATTCTCCATATTAATGATTAAGCATTACAACTCTTATGCTTTGGATCAATCGTTTCTGTTTCATTTGAAGAACGACCATTCGTCTGGCTTTAATCTGACTTATATTTGCTGAGTTTTTCTTTTCCACTCTTTCTGGAATCATGCAGATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCATGTAGGTGGCTTATATTCAACTATCTACAGCTTTAGAATTCTAAACATGATCTTTTTAACCTCTTCTGCAACATTATTAATGTGTACACACGGTGGATTCTTTCTGCAGTTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAGGTAGGTGTTGCAACCGTACTTATACTGATTTACTCTATGCTCCCTTGTCATGAACATTAGTCATATTCGCTGCTTGCTTGGTTTTTATTACAGCTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAGGTTGACTCCTCGACTCCATGATTGTCTGCTAATATGTTTGATTGTGTGCCTTTGTGTTATTCATATTGACCACCTAGTTTTATCTTGTTGCACCAGACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAAGTAAGTTATAACATCGAGCTGCATCAAGGCAGCTTGTGTGTTTGCGTTTATCTTTTCACCATTCCTCTGGAAATGTTCAAAAATCAAGCTCATTGGCCTTAAATCTACTATCAAATTTGTGTGCTATAAAGCAACTTTTGAGTGTTGTTTGTTACCTTTCATTATAGGGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATC</genome_strand>
        <mrna_strand>TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAG............................................................................................................................................................GAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGG.....................................................................................................................................................................................ATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT............................................................................................................TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG.............................................................................................CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG................................................................................................ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAA.......................................................................................................................................................................GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309013" ref_strand="+" ref_description="SGN-E309013 [cLEY-23-P8]">
      <seq>ctggtggctgctgagaccgcttttacggtgagtgaagttgaagcattatctgagctgttcaatagacctaccacctctgtagttgatgatggactaattcacaaggaagaatttcagctggcgcttttcgagaaccaaaacaggagagatctttgtgctgacaggatttttgatctatttgatttcaagcgcaacggactgattggatttggagaattggtcagatcattgagtgtattccacccaaatgcaccagtagcagataaaattgcattcgcattccgattgtatgatctaaggcagactggttatattgagagagaagagctgagagagatggttttggcgctgctgaatgagtcagacttgattctttcggatgatatagttgaaatgattgtagataagacatttgatgaagcagataaaaagagtgacgggaagatcgatgaagaacaatggaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101484" stop="103176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101797" g_stop="101879" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="105" r_length="83" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156">
            <donor d_prob="0.997" d_score="0.82"/>
            <acceptor a_prob="0.736" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102036" g_stop="102095" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="165" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102277" g_stop="102385" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="274" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102494" g_stop="102546" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93">
            <donor d_prob="0.895" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102640" g_stop="102720" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="408" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102817" g_stop="102876" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E309013" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101797" e_stop="101879"/>
          <exon e_start="102036" e_stop="102095"/>
          <exon e_start="102277" e_stop="102385"/>
          <exon e_start="102494" e_stop="102546"/>
          <exon e_start="102640" e_stop="102720"/>
          <exon e_start="102817" e_stop="102876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAGGTATAATTTCTCTACTACTTGAATAACCGTTAAGCCATATATCGTTTATGTGTTCTTGGAGTTCCACATTTATAATTTACTAGTATTGAACTCTTTGATTACACGTAGAATATGTTATAGAGTTTCCTATTAACTTCTCTGGCATTCCATCATTAGGAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGGGTATGTTTTGTTGATTAACTTTTTCTTTGAAATGGATTCTCCATATTAATGATTAAGCATTACAACTCTTATGCTTTGGATCAATCGTTTCTGTTTCATTTGAAGAACGACCATTCGTCTGGCTTTAATCTGACTTATATTTGCTGAGTTTTTCTTTTCCACTCTTTCTGGAATCATGCAGATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCATGTAGGTGGCTTATATTCAACTATCTACAGCTTTAGAATTCTAAACATGATCTTTTTAACCTCTTCTGCAACATTATTAATGTGTACACACGGTGGATTCTTTCTGCAGTTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAGGTAGGTGTTGCAACCGTACTTATACTGATTTACTCTATGCTCCCTTGTCATGAACATTAGTCATATTCGCTGCTTGCTTGGTTTTTATTACAGCTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAGGTTGACTCCTCGACTCCATGATTGTCTGCTAATATGTTTGATTGTGTGCCTTTGTGTTATTCATATTGACCACCTAGTTTTATCTTGTTGCACCAGACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAG</genome_strand>
        <mrna_strand>TTACGGTGAGTGAAGTTGAAGCATTATCTGAGCTGTTCAATAGACCTACCACCTCTGTAGTTGATGATGGACTAATTCACAAG............................................................................................................................................................GAAGAATTTCAGCTGGCGCTTTTCGAGAACCAAAACAGGAGAGATCTTTGTGCTGACAGG.....................................................................................................................................................................................ATTTTTGATCTATTTGATTTCAAGCGCAACGGACTGATTGGATTTGGAGAATTGGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT............................................................................................................TCGCATTCCGATTGTATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG.............................................................................................CTGAGAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG................................................................................................ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATCGATGAAGAACAATGGAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545012" ref_strand="+" ref_description="SGN-E545012 [TUS-67-K7](-)">
      <seq>ttttgcagacaggtttttgatctatttgatttcaagcgcaacggagtgattggatttggagaatttgtcagatcattgagtgtattccacccaaatgcaccagtagcagataaaattgcatttgcattccgattatatgatctaaggcagactggttatattgagagagaagagctgaaagagatggttttggcgctgctgaatgagtcagacttgattctttcggatgatatagttgaaatgattgtagataagacatttgatgaagcagataaaaagagtgacgggaagatagatgaagaagaatggaaggagtttgtttcaatgaatccctctcttttaaagaatatgacccttccatatctcaaggatataactttagcatttcctagctttgtgatgaactctgaggtggaagattcggaagtctagactcatgcttttagcatataacacgcgtagttgaaactcccacgtatcaggtaatctcttccgaactagtgatgcaacagaaatgcaaaagagtcgagattaatcggattttgcattgaaattttggaagttggctacaccagattgatgcagaaaatcagttcttttgccagctccaataggcattagcaagatgtactacttttaaagtatctagctagtctgttggagttagatatcaaggtagtattgaaagtcgaagttttgttcaaatgtaataaacaaacctgaatttcaaatttgaaatccaaattgcactgaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101970" stop="103786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102083" g_stop="102095" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102277" g_stop="102385" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="121" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102494" g_stop="102546" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="174" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102640" g_stop="102720" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="255" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102817" g_stop="102929" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="368" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103097" g_stop="103477" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="749" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="753" polyA_stop="780"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E545012" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102083" e_stop="102095"/>
          <exon e_start="102277" e_stop="102385"/>
          <exon e_start="102494" e_stop="102546"/>
          <exon e_start="102640" e_stop="102720"/>
          <exon e_start="102817" e_stop="102929"/>
          <exon e_start="103097" e_stop="103477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGACAGGGTATGTTTTGTTGATTAACTTTTTCTTTGAAATGGATTCTCCATATTAATGATTAAGCATTACAACTCTTATGCTTTGGATCAATCGTTTCTGTTTCATTTGAAGAACGACCATTCGTCTGGCTTTAATCTGACTTATATTTGCTGAGTTTTTCTTTTCCACTCTTTCTGGAATCATGCAGATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCATGTAGGTGGCTTATATTCAACTATCTACAGCTTTAGAATTCTAAACATGATCTTTTTAACCTCTTCTGCAACATTATTAATGTGTACACACGGTGGATTCTTTCTGCAGTTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAGGTAGGTGTTGCAACCGTACTTATACTGATTTACTCTATGCTCCCTTGTCATGAACATTAGTCATATTCGCTGCTTGCTTGGTTTTTATTACAGCTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAGGTTGACTCCTCGACTCCATGATTGTCTGCTAATATGTTTGATTGTGTGCCTTTGTGTTATTCATATTGACCACCTAGTTTTATCTTGTTGCACCAGACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAAGTAAGTTATAACATCGAGCTGCATCAAGGCAGCTTGTGTGTTTGCGTTTATCTTTTCACCATTCCTCTGGAAATGTTCAAAAATCAAGCTCATTGGCCTTAAATCTACTATCAAATTTGTGTGCTATAAAGCAACTTTTGAGTGTTGTTTGTTACCTTTCATTATAGGGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACATGAATTTCAAATTTGAAATCCAAATTGCA</genome_strand>
        <mrna_strand>TTTTGCAGACAGG.....................................................................................................................................................................................-TTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT............................................................................................................TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG.............................................................................................CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG................................................................................................ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTTTAAAGAATATGACCCTTCCATATCTCAA.......................................................................................................................................................................GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACCTGAATTTCAAATTTGAAATCCAAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572596" ref_strand="+" ref_description="SGN-E572596 [31774]">
      <seq>ctaaaacccaaatttataaatccgaatcttgcccattgaatctgtaaagttgccgattggatttccactttcagaattgtgagattgattggatcaatgtgtgaactgtggatgacctaatctgtaatgcaatcaataaattcgggtgaaaagaagtgtttgaaacgttcgagatcattttcaagtgagatgccggggactgatacgaatgttgcaaagcctttagaggattgcatcctgtttcctgttgaagatatagtgcagtatcctctgcctggttgtggttcaccaacgtctataggttttagtccagatgatagtttagttacatatttatatagtccaaaccaaaatctatgtagaaaggtttttgtattggatctcaagaatggaaggcatgaattgttctttagtccaccagatggtggactcgatgagaataacttatctgctgaagagaagcttagaagggaaaggtcaagggaacgtggtttaggggtaacacgatatgagtgggttaaggcaagcgccagacggaaggtcattatggtaccactacctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="104687" stop="106386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104987" g_stop="105060" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105061" i_stop="105596" i_length="536">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105597" g_stop="106086" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="564" r_length="490" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E572596" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104987" e_stop="105060"/>
          <exon e_start="105597" e_stop="106086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCCAAATTTATGAATCCAAATCTTGCCCACTGAATCTAAAAAAGTGCCGATAGGATTTCCACTTTCAGGCATGTTCATTCAATCTCTTAATCACTTATTACAGATTGGGATTTATCAATCCCCTTTAGTTTTTTGTTTTTTTGTTTTTGCATTTTTTCTATGCTTTTTGATTGTTTTATAATCTTTGTTTACTCTATTTGAAGTGAAGAGTTTGGTGGTAGTGTAAAGATTGGAACTTTATTTGGTTTTGTTTAGAATCTTGAAGTAAAGAGTTTGATGGTAGTATAAAGATTGCAGCTTTATTTGGTTTTGTCTTAGAATCTTGGTTTATTTGGTAATTGGACTAGTGGGTGTTTTCTGTTTTCTTGTTTTAGTTTTTTGTTTGGTTTGTTTTCTTGTTTTAGTTCTGTATTTGGTTTATTTTAATTGTGGGTGTTTTCTGTTTTCTTGTTTTAGTTCATTGTTTGGTTTATTTTACTAGTGGGTGTTTTCTATGTTCTTGTTTTAGTTCTTTTGGTTTATTTTCTTGTTGTTAGAACGTATAAGAAGTACTTTGGCGAAGAGTTGGTAGCATTAGATTGAATTTGTATCCTGTTTTGTGCAGAATTGTGAGATTGATTGGATCAATGTGTGAACTGTGGATGACTTAATCTGTAATGCAATCAATAAATTCGGGTGAAAAGAAGTGTTTGAAACGTTCGAGATCATTTTCAAGTGAGATGCCAGGGACTGATACAAATGTTGCAAAGCCTTTAGAGGATTGCGTCCTGTTTCCTGTTGAAGATATAGTGCAGTATCCTCTACCTGGTTGTGGTTCACCAACGTCTATAGGTTTTAGTCCAGATGATAGTTTAGTTACATATTTATATAGTCCAAACCAAAATCTATGTAGAAAGGTTTTTGTATTGGATCTCAAGAATGGAAGGCATGAATTGTTCTTTAGTCCACCAGATGGTGGACTCGATGAGAATAACTTATCTGCTGAAGAGAAGCTTAGAAGGGAGAGGTCAAGGGAACGTGGTTTAGGGGTAACACGATATGAGTGGGTTAAGGCAAGCGCCAGACGGAAAGTCATTATGGTACCACTACCTGCT</genome_strand>
        <mrna_strand>CTAAAACCCAAATTTATAAATCCGAATCTTGCCCATTGAATCTGTAAAGTTGCCGATTGGATTTCCACTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGAGATTGATTGGATCAATGTGTGAACTGTGGATGACCTAATCTGTAATGCAATCAATAAATTCGGGTGAAAAGAAGTGTTTGAAACGTTCGAGATCATTTTCAAGTGAGATGCCGGGGACTGATACGAATGTTGCAAAGCCTTTAGAGGATTGCATCCTGTTTCCTGTTGAAGATATAGTGCAGTATCCTCTGCCTGGTTGTGGTTCACCAACGTCTATAGGTTTTAGTCCAGATGATAGTTTAGTTACATATTTATATAGTCCAAACCAAAATCTATGTAGAAAGGTTTTTGTATTGGATCTCAAGAATGGAAGGCATGAATTGTTCTTTAGTCCACCAGATGGTGGACTCGATGAGAATAACTTATCTGCTGAAGAGAAGCTTAGAAGGGAAAGGTCAAGGGAACGTGGTTTAGGGGTAACACGATATGAGTGGGTTAAGGCAAGCGCCAGACGGAAGGTCATTATGGTACCACTACCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689145" ref_strand="+" ref_description="SGN-E689145 [t3_tus_80_E24]">
      <seq>cgttaacggaaaaatgggtactggtggtcattggacagcaaatatatagcattcacacaggttgattcatctgggatacctttattcagaattatgcatcaaggtaaaagttccgttggtcctgaggcacaggaagaccacgcttacccttttgctggagggccaaatgtcaaaattcgcctgggagtggtttcagctaacgggggtcaaataacatggatggatcttctttgtggtgtaaaggacaaagcaaatgaggacgaggaatatttggcgagagtgaattggatgcatggaaatattctgactgcacaagtcttgagtcgatcacaatccaaactgaaaatcattaaatttgatatcaagacagggaaaaggagtgtaatattggttgaagaacatgatacatgggtcaatcttcacgattgttttatacctttggacaaaggactcaacagaactaatggtgcatttatttgggccagcgagaaaacagggttcaaacatttgtatcttcatgacacaaatggagtctgtttgggaccgataactcaaggtgattggttggttgaacaaattgcgggtgtaaatgaagttactggccttgtatattttacaggaactttggatgggcctatggaatctcacctttactgtgctaaattgttccccgaagctaacggtccattgcagtcccctttgagattgactaatggacatggaaaacatgtcgttgtgcttgatcgtcaaatgcaaagattcatagatatccatgattccttggtctcacctcccagaatttcactctgctccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="109322" stop="110735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109618" g_stop="110435" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="818" r_length="818" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E689145" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109618" e_stop="110435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACGGAAAAATGGGTACTGGTGGTCATTGGACAGCAAATATATAGCATTCACACAGGTTGATTCATCTGGGATACCTTTATTCAGAATTATGCATCAAGGTAAAAGTTCCGTTGGTCCTGAGGCACAGGAAGACCACGCTTACCCTTTTGCTGGAGGGCCAAATGTCAAAATTCGCCTGGGAGTGGTTTCAGCTAACGGGGGTCAAATAACATGGATGGATCTTCTTTGTGGTGTAAAGGACAAAGCAAATGAGGACGAGGAATATTTGGCGAGAGTGAATTGGATGCATGGAAATATTCTGACTGCACAAGTCTTGAGTCGATCACAATCCAAACTGAAAATCATTAAATTTGATATCAAGACAGGGAAAAGGAGTGTAATATTGGTTGAAGAACATGATACATGGGTCAATCTTCACGATTGTTTTATACCTTTGGACAAAGGACTCAACAGAACTAATGGTGCATTTATTTGGGCCAGCGAGAAAACAGGGTTCAAACATTTGTATCTTCATGACACAAATGGAGTCTGTTTGGGACCGATAACTCAAGGTGATTGGTTGGTTGAACAAATTGCGGGTGTAAATGAAGTTACTGGCCTTGTATATTTTACAGGAACTTTGGATGGGCCTATGGAATCTCACCTTTACTGTGCTAAATTGTTCCCCGAAGCTAACGGTCCATTGCAGTCCCCTTTGAGATTGACTAATGGACATGGAAAACATGTCGTTGTGCTTGATCGTCAAATGCAAAGATTCATAGATATCCATGATTCCTTGGTCTCACCTCCCAGAATTTCACTCTGCTCCTTGCA</genome_strand>
        <mrna_strand>CGTTAACGGAAAAATGGGTACTGGTGGTCATTGGACAGCAAATATATAGCATTCACACAGGTTGATTCATCTGGGATACCTTTATTCAGAATTATGCATCAAGGTAAAAGTTCCGTTGGTCCTGAGGCACAGGAAGACCACGCTTACCCTTTTGCTGGAGGGCCAAATGTCAAAATTCGCCTGGGAGTGGTTTCAGCTAACGGGGGTCAAATAACATGGATGGATCTTCTTTGTGGTGTAAAGGACAAAGCAAATGAGGACGAGGAATATTTGGCGAGAGTGAATTGGATGCATGGAAATATTCTGACTGCACAAGTCTTGAGTCGATCACAATCCAAACTGAAAATCATTAAATTTGATATCAAGACAGGGAAAAGGAGTGTAATATTGGTTGAAGAACATGATACATGGGTCAATCTTCACGATTGTTTTATACCTTTGGACAAAGGACTCAACAGAACTAATGGTGCATTTATTTGGGCCAGCGAGAAAACAGGGTTCAAACATTTGTATCTTCATGACACAAATGGAGTCTGTTTGGGACCGATAACTCAAGGTGATTGGTTGGTTGAACAAATTGCGGGTGTAAATGAAGTTACTGGCCTTGTATATTTTACAGGAACTTTGGATGGGCCTATGGAATCTCACCTTTACTGTGCTAAATTGTTCCCCGAAGCTAACGGTCCATTGCAGTCCCCTTTGAGATTGACTAATGGACATGGAAAACATGTCGTTGTGCTTGATCGTCAAATGCAAAGATTCATAGATATCCATGATTCCTTGGTCTCACCTCCCAGAATTTCACTCTGCTCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323452" ref_strand="+" ref_description="SGN-E323452 [cTOC-7-K22]">
      <seq>gaacggaaaaatgggtactggtggtcattggacagcaaatatatagcattcacacaggttgattcatctgggatacctttattcagaattatgcatcaaggtaaaagttccgttggtcctgaggcacaggaagaccacgcttacccttttgctggagggccaaatgtcaaaattcgcctgggagtggtttcagctaacgggggtcaaataacatggatggatcttctttgtggtgtaaaggacaaagcaaatgaggacgaggaatatttggcgagagtgaattggatgcatggaaatattctgactgcacaagtcttgagtcgatcacaatccaaactgaaaatcattaaatttgatatcaagacagggaaaaggagtgtaatattggttgaagaacatgatacatgggtcaatcttcacgattgttttatacctttggacaaaggactcaacagaactaatggtgcatttatttgggccagcgagaaaacagggttcaaacatttgtatcttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="109321" stop="110438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109621" g_stop="110138" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E323452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109621" e_stop="110138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGGAAAAATGGGTACTGGTGGTCATTGGACAGCAAATATATAGCATTCACACAGGTTGATTCATCTGGGATACCTTTATTCAGAATTATGCATCAAGGTAAAAGTTCCGTTGGTCCTGAGGCACAGGAAGACCACGCTTACCCTTTTGCTGGAGGGCCAAATGTCAAAATTCGCCTGGGAGTGGTTTCAGCTAACGGGGGTCAAATAACATGGATGGATCTTCTTTGTGGTGTAAAGGACAAAGCAAATGAGGACGAGGAATATTTGGCGAGAGTGAATTGGATGCATGGAAATATTCTGACTGCACAAGTCTTGAGTCGATCACAATCCAAACTGAAAATCATTAAATTTGATATCAAGACAGGGAAAAGGAGTGTAATATTGGTTGAAGAACATGATACATGGGTCAATCTTCACGATTGTTTTATACCTTTGGACAAAGGACTCAACAGAACTAATGGTGCATTTATTTGGGCCAGCGAGAAAACAGGGTTCAAACATTTGTATCTTCATGA</genome_strand>
        <mrna_strand>GAACGGAAAAATGGGTACTGGTGGTCATTGGACAGCAAATATATAGCATTCACACAGGTTGATTCATCTGGGATACCTTTATTCAGAATTATGCATCAAGGTAAAAGTTCCGTTGGTCCTGAGGCACAGGAAGACCACGCTTACCCTTTTGCTGGAGGGCCAAATGTCAAAATTCGCCTGGGAGTGGTTTCAGCTAACGGGGGTCAAATAACATGGATGGATCTTCTTTGTGGTGTAAAGGACAAAGCAAATGAGGACGAGGAATATTTGGCGAGAGTGAATTGGATGCATGGAAATATTCTGACTGCACAAGTCTTGAGTCGATCACAATCCAAACTGAAAATCATTAAATTTGATATCAAGACAGGGAAAAGGAGTGTAATATTGGTTGAAGAACATGATACATGGGTCAATCTTCACGATTGTTTTATACCTTTGGACAAAGGACTCAACAGAACTAATGGTGCATTTATTTGGGCCAGCGAGAAAACAGGGTTCAAACATTTGTATCTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728506" ref_strand="+" ref_description="SGN-E728506 [LA18AC02]">
      <seq>ggtgctcctgttacatcatgggacggatatgatacattttacacagaaaagtatatgggcctaccatctgaaaatccatcagtctatcaagagggctccgtaatgcaccacgttgacaagatcaaagggaagcttttactcgtgcatggcatgatcgatgaaaatgtgcattttaggcacactgctaggcttattaacgcacttgtggcagccagaaagccttacgagttgttaatattcccagatgaacgtcacatgcctcggagactgagagatcgtatatacatggaggagagaatttgggaattcatcgagagaaacttgtgaatggcctactcattgttctagcaatcgcttatatgccctcggctctcgggtagagaaaattttggggctcatttccaggtcaacacagcatggttcacttgattatagaagaaaaatttgtactattctcaggctaataaaagttgtttgtgttaacttaatctgtgttatagctgccatgtaccattagtaccagatgtacaaaaataatgcaacactccatttcctgggaagaaattaatttgtttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110933" stop="112111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111233" g_stop="111811" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="609"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E728506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111233" e_stop="111811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTCCTGTTACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACACAGCATGGTTCACTTGATTATAGAAGAAAAATTTGTACTATTCTCAGGCTAATAAAAGTTGTTTGTGTTAACTTAATCTGTGTTATAGCTGCCATGTACCATTAGTACCAGATGTACAAAAATAATGCAACACTCCATTTCCTGGGAAGAAATTAATTTGTTTTTCA</genome_strand>
        <mrna_strand>GGTGCTCCTGTTACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACACAGCATGGTTCACTTGATTATAGAAGAAAAATTTGTACTATTCTCAGGCTAATAAAAGTTGTTTGTGTTAACTTAATCTGTGTTATAGCTGCCATGTACCATTAGTACCAGATGTACAAAAATAATGCAACACTCCATTTCCTGGGAAGAAATTAATTTGTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728819" ref_strand="+" ref_description="SGN-E728819 [LA19AC02]">
      <seq>ggtgctcctgttacatcatgggacggatatgatacattttacacagaaaagtatatgggcctaccatctgaaaatccatcagtctatcaagagggctccgtaatgcaccacgttgacaagatcaaagggaagcttttactcgtgcatggcatgatcgatgaaaatgtgcattttaggcacactgctaggcttattaacgcacttgtggcagccagaaagccttacgagttgttaatattcccagatgaacgtcacatgcctcggagactgagagatcgtatatacatggaggagagaatttgggaattcatcgagagaaacttgtgaatggcctactcattgttctagcaatcgcttatatgccctcggctctcgggtagagaaaattttggggctcatttccaggtcaacacagcatggttcacttgattatagaagaaaaatttgtactattctcaggctaataaaagttgtttgtgttaacttaatctgtgttatagctgccatgtaccattagtaccagatgtacaaaaataatgcaacactccatttcctgggaagaaattaatttgttttntcnannngnnagaaaaaaaaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110933" stop="112110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111233" g_stop="111808" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="598"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E728819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111233" e_stop="111808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTCCTGTTACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACACAGCATGGTTCACTTGATTATAGAAGAAAAATTTGTACTATTCTCAGGCTAATAAAAGTTGTTTGTGTTAACTTAATCTGTGTTATAGCTGCCATGTACCATTAGTACCAGATGTACAAAAATAATGCAACACTCCATTTCCTGGGAAGAAATTAATTTGTTTT</genome_strand>
        <mrna_strand>GGTGCTCCTGTTACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACACAGCATGGTTCACTTGATTATAGAAGAAAAATTTGTACTATTCTCAGGCTAATAAAAGTTGTTTGTGTTAACTTAATCTGTGTTATAGCTGCCATGTACCATTAGTACCAGATGTACAAAAATAATGCAACACTCCATTTCCTGGGAAGAAATTAATTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732759" ref_strand="+" ref_description="SGN-E732759 [LB03AC02]">
      <seq>tacatcatgggacggatatgatacattttacccttaaaagtatatgggcctaccatctgaaaatccatcagtctatcaagagggctccgtaatgcaccacgttgacaagatcaaagggaagcttttactcgtgcatggcatgatcgatgaaaatgtgcattttaggcacactgctaggcttattaacgcacttgtggcagccagaaagccttacgagttgttaatattcccagatgaacgtcacatgcctcggagactgagagatcgtatatacatggaggacagaatttgggaattcatcgagagaaacttgtgaatggcctactcattgttctagcaatcgcttatatgccctcggctctcgggtagagaaaattttggggctcatttccaggtcaacaacagcatggttcacttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110944" stop="111964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111244" g_stop="111664" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E732759" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111244" e_stop="111664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAAC-ACAGCATGGTTCACTTGATTA</genome_strand>
        <mrna_strand>TACATCATGGGACGGATATGATACATTTTACCCTTAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGACAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACAACAGCATGGTTCACTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592252" ref_strand="+" ref_description="SGN-E592252 [45981]">
      <seq>caatgattcaatcttgatttttttgaccgtaggtgggtctgtaattcccttgcgtgttaaggagtccgattctattgcttctgtgaaatctaaaatccagacattcaaaggtttctttgtgaagaagcagaagcttgtctttgatggaaaggagttggctcggaacaattcccgtgtgggggactatggggttgctgatggtaacattttgcatttggttcttcgtctgtctgatttacaagctattactgttaggacagtgtgtggtcaggagtttgagttccatgtcgatagaaagagaaatgttggttatgtgaaacagcagattgcaaagaaggggagagattttcgtgatctcagggaacaggaactaatacttgatggtgtggaactagaagataagaggctgataaatgatatttgtaaaagcaacgatgcagtgattcacttgttggtgcgtaaatcagctaaagtacaagctcaagccgtgaaaacagattttgaagtttcagttgtagcatcagcatcaaatgagaaagggtctgatgcagtagagaaagctccaagagaggtttcatgctgttggactcaatactgtgccaagaagttttattttggaaccattgattgtcaatcctgagatcacaccatcgccagtggttaagcagctgattggttagcactttttgatggggatagcaaggggtcaccaaaccaaattaggtcttctgagggatcagggggtgcttattcatgctagattcatgtgctcacgaattatgtctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="133575" stop="134956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133875" g_stop="134656" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E592252" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133875" e_stop="134656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGATTCAATCTTGATTTTTTTGACCGTGGGTGGGTCTGTAATTCCCTTGCGTGTTAAGGAGTCCGATTCTATTGCCTATGTGAAATCTAAAATCCAAACATTCAAAGGTTTCTTTGTGAAGAAGCAGAAGCTTGTCTTTGATGGAAAGGAGTTGGCTCGGAACAATTCCCGTGTAGGGGACTATGGGGTTGCTGATGGTAACATGTTGCATTTGGTTCTTCGTCTGTCTGATATACAAGCAATTACTGTTAGGACAGTGTGTGGTCAGGAGTTTGAGTTCCATGTCGATAGAAATAGAAATGTTGGTTATGTTAAAGAGCAGATTGCAAAGAAGGGAAGAGACTTTCGTGATCTTAGGGAACAGGAACTAGTACATGATGGTGTGGAACTAGAAGATAAGAGGCTGATAAATGATATTTGTAAAAGCAACGATGCAGTAATTCACTTGTTGGTGCGTAAATCAGCTAAAGTACAGGCTCAAGCCGTGAAAACAGATTTTGAAGTTTCAGTTGTAGCATCGGCATCAAATGAGAAAGGGTCTGATGCAGTAGAG-AAGCTCCAAGAGAGGTTTCAGGCTGTTGGATTCAATACTGTGCCAAGAAGTTTTATTTTGGAACCATTGATTGTCAATCCTAAGATCACACCATCGCCAGTTGTTAAGCAGCTGATTGG-CAGCAC-TTTCGAT-GGTATGGCAAGGGGTCACC-AACC-AATTAGGTCCTCTGAGGGATCAGGGGGTGCTTATTTCATGCTAGATTCATATGCTCA-GAATTATGTCTCTG</genome_strand>
        <mrna_strand>CAATGATTCAATCTTGATTTTTTTGACCGTAGGTGGGTCTGTAATTCCCTTGCGTGTTAAGGAGTCCGATTCTATTGCTTCTGTGAAATCTAAAATCCAGACATTCAAAGGTTTCTTTGTGAAGAAGCAGAAGCTTGTCTTTGATGGAAAGGAGTTGGCTCGGAACAATTCCCGTGTGGGGGACTATGGGGTTGCTGATGGTAACATTTTGCATTTGGTTCTTCGTCTGTCTGATTTACAAGCTATTACTGTTAGGACAGTGTGTGGTCAGGAGTTTGAGTTCCATGTCGATAGAAAGAGAAATGTTGGTTATGTGAAACAGCAGATTGCAAAGAAGGGGAGAGATTTTCGTGATCTCAGGGAACAGGAACTAATACTTGATGGTGTGGAACTAGAAGATAAGAGGCTGATAAATGATATTTGTAAAAGCAACGATGCAGTGATTCACTTGTTGGTGCGTAAATCAGCTAAAGTACAAGCTCAAGCCGTGAAAACAGATTTTGAAGTTTCAGTTGTAGCATCAGCATCAAATGAGAAAGGGTCTGATGCAGTAGAGAAAGCTCCAAGAGAGGTTTCATGCTGTTGGACTCAATACTGTGCCAAGAAGTTTTATTTTGGAACCATTGATTGTCAATCCTGAGATCACACCATCGCCAGTGGTTAAGCAGCTGATTGGTTAGCACTTTTTGATGGGGATAGCAAGGGGTCACCAAACCAAATTAGGTCTTCTGAGGGATCAGGGGGTGCTTA-TTCATGCTAGATTCATGTGCTCACGAATTATGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456215" ref_strand="+" ref_description="SGN-E456215 [cSTS-28-J14]">
      <seq>gtgatctcagggaacaggaactaatacttgatggtgtggaactagaagataagaggctgataaatgatatttgtaaaagcaacgatgcagtgattcacttgttggtgcgtaaatcagctaaagtacaagctcaagccgtgaaaacagattttgaagtttcagttgtagcatcagcatcaaatgagaaagggtctgatgcagtagagaagctccaagagaggtttcatgctgttggactcaatactgtgccaagaagttttattttggaaccattgattgtcaatcctgagatcacaccatcgccagtggttaagcagctgattggtagcacttttgatgggatagcaaggggtcaccaaccaattaggtcttctgagggatcagggggtgcttatttcatgctagattcatgtgctcagaattatgtctctgtttttaaaccaacagatgaggagcctatggctgtgaataatccccgggggcttccattgtctgtagatggtgaggggttgaagaagggcacacgtgtaggagagggggcatttagggaggttgctgcatatattttggatcatcccaagtcgggacctcgctcaacttgttgtgatgagaagggatttgctggggttcctcccacagttatggtcaagtgtttccatactggtttcaatcatgctgaaggctgtgaatattcatccaagagtcttaagattgggtcgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="133925" stop="135247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134225" g_stop="134947" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E456215" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134225" e_stop="134947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCTTAGGGAACAGGAACTAGTACATGATGGTGTGGAACTAGAAGATAAGAGGCTGATAAATGATATTTGTAAAAGCAACGATGCAGTAATTCACTTGTTGGTGCGTAAATCAGCTAAAGTACAGGCTCAAGCCGTGAAAACAGATTTTGAAGTTTCAGTTGTAGCATCGGCATCAAATGAGAAAGGGTCTGATGCAGTAGAGAAGCTCCAAGAGAGGTTTCAGGCTGTTGGATTCAATACTGTGCCAAGAAGTTTTATTTTGGAACCATTGATTGTCAATCCTAAGATCACACCATCGCCAGTTGTTAAGCAGCTGATTGGCAGCACTTTCGATGGTATGGCAAGGGGTCACCAACCAATTAGGTCCTCTGAGGGATCAGGGGGTGCTTATTTCATGCTAGATTCATATGCTCAGAATTATGTCTCTGTTTTTAAACCAACAGATGAGGAGCCTATGGCTGTGAATAATCCCCGGGGGCTTCCATTGTCTGTAGATGGTGAGGGGTTGAAGAAGGGCACACGTGTAGGAGAGGGGGCATTTAGGGAGGTTGCTGCGTATATTTTGGATCATCCCAAGTCGGGACCTCGCTCAGCTTGTTCTGATGAGAAGGGATTTGCTGGGGTTCCTCCCACAGTTATGGTCAAGTGTTTCCATACTGGTTTCAATCATGCTGAAGGCTCTGAATGTTCATCCAAGAGTCTTAAGATTGGGTCGCTGC</genome_strand>
        <mrna_strand>GTGATCTCAGGGAACAGGAACTAATACTTGATGGTGTGGAACTAGAAGATAAGAGGCTGATAAATGATATTTGTAAAAGCAACGATGCAGTGATTCACTTGTTGGTGCGTAAATCAGCTAAAGTACAAGCTCAAGCCGTGAAAACAGATTTTGAAGTTTCAGTTGTAGCATCAGCATCAAATGAGAAAGGGTCTGATGCAGTAGAGAAGCTCCAAGAGAGGTTTCATGCTGTTGGACTCAATACTGTGCCAAGAAGTTTTATTTTGGAACCATTGATTGTCAATCCTGAGATCACACCATCGCCAGTGGTTAAGCAGCTGATTGGTAGCACTTTTGATGGGATAGCAAGGGGTCACCAACCAATTAGGTCTTCTGAGGGATCAGGGGGTGCTTATTTCATGCTAGATTCATGTGCTCAGAATTATGTCTCTGTTTTTAAACCAACAGATGAGGAGCCTATGGCTGTGAATAATCCCCGGGGGCTTCCATTGTCTGTAGATGGTGAGGGGTTGAAGAAGGGCACACGTGTAGGAGAGGGGGCATTTAGGGAGGTTGCTGCATATATTTTGGATCATCCCAAGTCGGGACCTCGCTCAACTTGTTGTGATGAGAAGGGATTTGCTGGGGTTCCTCCCACAGTTATGGTCAAGTGTTTCCATACTGGTTTCAATCATGCTGAAGGCTGTGAATATTCATCCAAGAGTCTTAAGATTGGGTCGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426158" ref_strand="+" ref_description="SGN-E426158 [STM-46-K3]">
      <seq>gtgatctcagggaacaggaactaatacttgatggtgtggatctagaagataagaggctgataaatgatatttgtaaaagcaacgatgcagtgattcacttgttggtgcgtaaatcagctaaagtacaagctcaagccgtgaaaacagattttgaagtttcagttgtagcatcagcatcaaatgagaaagggtctgatgcagtagagaagctccaagagaggtttcatgctgttggactcaatactgtgccaagaagttttattttggaaccattgattgtcaatcctgagatcacaccatcgccagtggttaagcagctgattggtagcacttttgatgggatagcaaggggtcaccaaccaattaggtcttctgagggatcagggggtgcttatttcatgctagattcatgtgctcagaattatgtctctgtttttaaaccaacagatgaggagcctatggctgtgaataatccccgggggcttccattgtctgtagatggtgaggggttgaagaagggcacacgtgtaggagagggggcatttagggaggttgctgcatatattttggatcatcccaagtcgggacctcgctncacttgttgtgatgagaaaggatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="133925" stop="135147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134225" g_stop="134847" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E426158" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134225" e_stop="134847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCTTAGGGAACAGGAACTAGTACATGATGGTGTGGAACTAGAAGATAAGAGGCTGATAAATGATATTTGTAAAAGCAACGATGCAGTAATTCACTTGTTGGTGCGTAAATCAGCTAAAGTACAGGCTCAAGCCGTGAAAACAGATTTTGAAGTTTCAGTTGTAGCATCGGCATCAAATGAGAAAGGGTCTGATGCAGTAGAGAAGCTCCAAGAGAGGTTTCAGGCTGTTGGATTCAATACTGTGCCAAGAAGTTTTATTTTGGAACCATTGATTGTCAATCCTAAGATCACACCATCGCCAGTTGTTAAGCAGCTGATTGGCAGCACTTTCGATGGTATGGCAAGGGGTCACCAACCAATTAGGTCCTCTGAGGGATCAGGGGGTGCTTATTTCATGCTAGATTCATATGCTCAGAATTATGTCTCTGTTTTTAAACCAACAGATGAGGAGCCTATGGCTGTGAATAATCCCCGGGGGCTTCCATTGTCTGTAGATGGTGAGGGGTTGAAGAAGGGCACACGTGTAGGAGAGGGGGCATTTAGGGAGGTTGCTGCGTATATTTTGGATCATCCCAAGTCGGGACCTCGCTCAGCTTGTTCTGATGAGAAGGGATTTGCT</genome_strand>
        <mrna_strand>GTGATCTCAGGGAACAGGAACTAATACTTGATGGTGTGGATCTAGAAGATAAGAGGCTGATAAATGATATTTGTAAAAGCAACGATGCAGTGATTCACTTGTTGGTGCGTAAATCAGCTAAAGTACAAGCTCAAGCCGTGAAAACAGATTTTGAAGTTTCAGTTGTAGCATCAGCATCAAATGAGAAAGGGTCTGATGCAGTAGAGAAGCTCCAAGAGAGGTTTCATGCTGTTGGACTCAATACTGTGCCAAGAAGTTTTATTTTGGAACCATTGATTGTCAATCCTGAGATCACACCATCGCCAGTGGTTAAGCAGCTGATTGGTAGCACTTTTGATGGGATAGCAAGGGGTCACCAACCAATTAGGTCTTCTGAGGGATCAGGGGGTGCTTATTTCATGCTAGATTCATGTGCTCAGAATTATGTCTCTGTTTTTAAACCAACAGATGAGGAGCCTATGGCTGTGAATAATCCCCGGGGGCTTCCATTGTCTGTAGATGGTGAGGGGTTGAAGAAGGGCACACGTGTAGGAGAGGGGGCATTTAGGGAGGTTGCTGCATATATTTTGGATCATCCCAAGTCGGGACCTCGCTNCACTTGTTGTGATGAGAAAGGATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559886" ref_strand="+" ref_description="SGN-E559886 [19454]">
      <seq>ggatagcaaggggtcacaaccaattagtcttctgagggatcaggggtgcttatttcatgctagattcatgtgctcagaattatgtctctgtttttaaaccaacagatgagagcctatggctgtgaataatccccgggggcttccattgtctgtagatggtgaggggttgaagaagggcacacgtgtagagagggggcatttaggaggttgctgcatatattttggatcatcccaagtcgggacctcgctcaacttgttgtgatgagaagggatttgctggggttcctcccacagttatggtcaagtgtttccatactggtttcaatcatgctgaaggctgtgaatattcatccaagagtcttaagattgggtcgctgcagatgttcaggaagaactgtggaagttgtgaggattttggtcctcgtgcttttcctgttgatgatgtacacaggatttcggtgctggacataaggttggctaatgcagataggcatgctggaaacattttggttcagaaagatgataaggatggtcagcttgtgcttataccaattgatcatggctactgcttgcctgaaaattttgaagattgtacttttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="134264" stop="135893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134564" g_stop="135150" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135151" i_stop="135570" i_length="420">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.764" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135571" g_stop="135593" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="604" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E559886" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134564" e_stop="135150"/>
          <exon e_start="135571" e_stop="135593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGGCAAGGGGTCACCAACCAATTAGGTCCTCTGAGGGATCAGGGGGTGCTTATTTCATGCTAGATTCATATGCTCAGAATTATGTCTCTGTTTTTAAACCAACAGATGAGGAGCCTATGGCTGTGAATAATCCCCGGGGGCTTCCATTGTCTGTAGATGGTGAGGGGTTGAAGAAGGGCACACGTGTAGGAGAGGGGGCATTTAGGGAGGTTGCTGCGTATATTTTGGATCATCCCAAGTCGGGACCTCGCTCAGCTTGTTCTGATGAGAAGGGATTTGCTGGGGTTCCTCCCACAGTTATGGTCAAGTGTTTCCATACTGGTTTCAATCATGCTGAAGGCTCTGAATGTTCATCCAAGAGTCTTAAGATTGGGTCGCTGCAGAAGTTCAGGAAGAACAGTGGAAGTTGCGAGGATTTTGGTCCTCGTGCTTTTCCTGTTGATGCTGTACACAGGATTTCTGTGCTGGACATAAGGTTGGCTAATGCAGATAGGCATGCTGGAAACATTTTGGTTCAGAAGGATGATATGGATGGTCAGGTTGTGCTTATACCAATTGATCATGGCTACTGCTTCCCTGAAAATGTAAGTGTCTCAACTCGGCATCCAATATTTACCAAATAGAACTATAGAAGCATGTAGTAATCTTAGATGGCATATCCTAAGATGATATGGGTATTAATTAACTTCTCTTCTGATTCCCTTTACTGGGTCTATTTCAGGCTTTTTTATGACTTCTATGGTGATGTATATATTTTCTATGATCGGTTTTAGAAGAATATATGTTTTATGAGGCGTATGACATAGGTTAAGAGAGTATTCCCTGGTATGCATCATTTTTTGCTCATTCACCTTAGATCATAGTACACTAGGTGTTGATCGTGTCTTACCTGCTAATTTGTGGAATGTGATTGCATTAATCAAGGCAACTTCTCCATGCCCTGATTTTTCTTTTCCAGATATGGTTCTCCACTCATTTTTTACCCCATCCCATTTCTAATACAGTTTGAAGATTGTACTTTTGATTG</genome_strand>
        <mrna_strand>GGATAGCAAGGGGTCA-CAACCAATTA-GTCTTCTGAGGGATCA-GGGGTGCTTATTTCATGCTAGATTCATGTGCTCAGAATTATGTCTCTGTTTTTAAACCAACAGATGA-GAGCCTATGGCTGTGAATAATCCCCGGGGGCTTCCATTGTCTGTAGATGGTGAGGGGTTGAAGAAGGGCACACGTGTA-GAGAGGGGGCATTTA-GGAGGTTGCTGCATATATTTTGGATCATCCCAAGTCGGGACCTCGCTCAACTTGTTGTGATGAGAAGGGATTTGCTGGGGTTCCTCCCACAGTTATGGTCAAGTGTTTCCATACTGGTTTCAATCATGCTGAAGGCTGTGAATATTCATCCAAGAGTCTTAAGATTGGGTCGCTGCAGATGTTCAGGAAGAACTGTGGAAGTTGTGAGGATTTTGGTCCTCGTGCTTTTCCTGTTGATGATGTACACAGGATTTCGGTGCTGGACATAAGGTTGGCTAATGCAGATAGGCATGCTGGAAACATTTTGGTTCAGAAAGATGATAAGGATGGTCAGCTTGTGCTTATACCAATTGATCATGGCTACTGCTTGCCTGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGATTGTACTTTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426159" ref_strand="-" ref_description="SGN-E426159 [STM-46-K3]">
      <seq>gatttcggtgctggacataaggttggctaatgcagataggcatgctggaaacattttgttcagaaagatgataaggatggtcagcttgtgcttataccaattgatcatggctactgcttgcctgaaaattttgaagattgtacttttgattggctttactggcctcaagcacaacaaccttactctgctgagacaattgcatacataaactctcttgatgccgagaaagacattgagcttctgaagtttcatggttggaccatgtcccttgcttgtgcacgtgtacttcgcatctctactatgcttctgaagaaaggtgcagagagaggtctcaccccttctgcaattggaggaatcatgtgcagggaaacactgaagaaggagtctatcattgagcagattgttgaagaagctgaagagagtgtgctcccaggaacaagtgaggcagcattcttgcagtctgtttcggtcatcatggatcgacgccttggtgacctgattaagtaaatgtgtatgaagatgtaaattttgtgcatatattaatagctacctggttgaaactaaatctggggaaggtgggatgtgaatgtgctgtttgtagggcctcttaacttgaaatatttagctttttgttagaataaaaatatgacttgatccctattaagttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="134721" stop="136386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135021" g_stop="135150" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135151" i_stop="135570" i_length="420">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.764" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135571" g_stop="136114" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="659" r_length="530" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E426159" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135021" e_stop="135150"/>
          <exon e_start="135571" e_stop="136114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTGTGCTGGACATAAGGTTGGCTAATGCAGATAGGCATGCTGGAAACATTTTGGTTCAGAAGGATGATATGGATGGTCAGGTTGTGCTTATACCAATTGATCATGGCTACTGCTTCCCTGAAAATGTAAGTGTCTCAACTCGGCATCCAATATTTACCAAATAGAACTATAGAAGCATGTAGTAATCTTAGATGGCATATCCTAAGATGATATGGGTATTAATTAACTTCTCTTCTGATTCCCTTTACTGGGTCTATTTCAGGCTTTTTTATGACTTCTATGGTGATGTATATATTTTCTATGATCGGTTTTAGAAGAATATATGTTTTATGAGGCGTATGACATAGGTTAAGAGAGTATTCCCTGGTATGCATCATTTTTTGCTCATTCACCTTAGATCATAGTACACTAGGTGTTGATCGTGTCTTACCTGCTAATTTGTGGAATGTGATTGCATTAATCAAGGCAACTTCTCCATGCCCTGATTTTTCTTTTCCAGATATGGTTCTCCACTCATTTTTTACCCCATCCCATTTCTAATACAGTTTGAAGATTGTACTTTTGATTGGCTCTACTGGCCTCAAGCACAACAACCTTACTCTGCTGAGACAATTGCATACATAAACTCTCTTGATGCTGAGAAAGATATTGAGCTTCTGAAGTTTCATGGTTGGACCATGTCCCTTGCTTGTGCACGTGTATTTCGTATCTCTACTATGCTTCTGAAGAAAGGTGCAGAGAGAGGTCTCACCCCTTGTGCAATTGGAGGAATCATGTGCAGGGAAGCACTGAAGAAGGAGTCTATGATTGAGCAGATTGTTGAAGAAGCTGAAGAGAGTGTGCTCCCAGGAACAAGTGAGGCAGCATTCTTGCAGTCTGTTTCGGTCATCATGGATCGACGCCTTGGTGACCTGATTAAGTAAATATGTATGTATGAAGATGTAAATTTTGTGCATATATTAATAGTTACCTGGTTGAAACTAAATTCTGGGAAAGGGTGGGATGTTAATGTGGTGTTTGTAGGGGGGCTCTTTTAACTTGAAATATTTAGCTTTTTGTTATTGTGGAAAAAAGTATGACTTGATAAAT</genome_strand>
        <mrna_strand>GATTTCGGTGCTGGACATAAGGTTGGCTAATGCAGATAGGCATGCTGGAAACATTTT-GTTCAGAAAGATGATAAGGATGGTCAGCTTGTGCTTATACCAATTGATCATGGCTACTGCTTGCCTGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGATTGTACTTTTGATTGGCTTTACTGGCCTCAAGCACAACAACCTTACTCTGCTGAGACAATTGCATACATAAACTCTCTTGATGCCGAGAAAGACATTGAGCTTCTGAAGTTTCATGGTTGGACCATGTCCCTTGCTTGTGCACGTGTACTTCGCATCTCTACTATGCTTCTGAAGAAAGGTGCAGAGAGAGGTCTCACCCCTTCTGCAATTGGAGGAATCATGTGCAGGGAAACACTGAAGAAGGAGTCTATCATTGAGCAGATTGTTGAAGAAGCTGAAGAGAGTGTGCTCCCAGGAACAAGTGAGGCAGCATTCTTGCAGTCTGTTTCGGTCATCATGGATCGACGCCTTGGTGACCTGATTAAGT-AA-ATG--TGTATGAAGATGTAAATTTTGTGCATATATTAATAGCTACCTGGTTGAAACTAAA-TCTGGGGAA-GGTGGGATGTGAATGTGCTGTTTGTA---GGGC-CTCTTAACTTGAAATATTTAGCTTTTTGTTA----GAATAAAAATATGACTTGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689538" ref_strand="+" ref_description="SGN-E689538 [LH_Ea01C16]">
      <seq>ccttattaagtctcttgatgctgagaaagacattgagcttctgaagtttcatggttggaccatgtcccttgcttgtgcacgtgtatttcgtatctctactatgcttctgaagaaaggtgcagagagaggtctcaccccttgtgcaattggaggaatcatgtgcagggaagcactgaagaaggagtctatgattgagcagattgttgaagaagctgaagagagtgtgctcccaggaacaagtgaggcagcattcatgcagtctgtttcggtcatcatggatcgacgccttggtgacctgattaagtaaatatgtatgtatgaagatgtaaattttgtgcatatattaatagttacctggttgaaactaaattgtgggaaagggtgggatgttaatgtggtgtttgtaggggctcttttaacttgaaataattagctttttgttattgtggaaaaaatatgacttgatataaaaataaaacagccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="135346" stop="136417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135641" g_stop="136114" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E689538" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135641" e_stop="136114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACATAAACTCTCTTGATGCTGAGAAAGATATTGAGCTTCTGAAGTTTCATGGTTGGACCATGTCCCTTGCTTGTGCACGTGTATTTCGTATCTCTACTATGCTTCTGAAGAAAGGTGCAGAGAGAGGTCTCACCCCTTGTGCAATTGGAGGAATCATGTGCAGGGAAGCACTGAAGAAGGAGTCTATGATTGAGCAGATTGTTGAAGAAGCTGAAGAGAGTGTGCTCCCAGGAACAAGTGAGGCAGCATTCTTGCAGTCTGTTTCGGTCATCATGGATCGACGCCTTGGTGACCTGATTAAGTAAATATGTATGTATGAAGATGTAAATTTTGTGCATATATTAATAGTTACCTGGTTGAAACTAAATTCTGGGAAAGGGTGGGATGTTAATGTGGTGTTTGTAGGGGGGCTCTTTTAACTTGAAATATTTAGCTTTTTGTTATTGTGGAAAAAAGTATGACTTGATAAAT</genome_strand>
        <mrna_strand>CCTT-ATTAAGTCTCTTGATGCTGAGAAAGACATTGAGCTTCTGAAGTTTCATGGTTGGACCATGTCCCTTGCTTGTGCACGTGTATTTCGTATCTCTACTATGCTTCTGAAGAAAGGTGCAGAGAGAGGTCTCACCCCTTGTGCAATTGGAGGAATCATGTGCAGGGAAGCACTGAAGAAGGAGTCTATGATTGAGCAGATTGTTGAAGAAGCTGAAGAGAGTGTGCTCCCAGGAACAAGTGAGGCAGCATTCATGCAGTCTGTTTCGGTCATCATGGATCGACGCCTTGGTGACCTGATTAAGTAAATATGTATGTATGAAGATGTAAATTTTGTGCATATATTAATAGTTACCTGGTTGAAACTAAATTGTGGGAAAGGGTGGGATGTTAATGTGGTGTTTGTA--GGGGCTCTTTTAACTTGAAATAATTAGCTTTTTGTTATTGTGGAAAAAA-TATGACTTGATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693378" ref_strand="+" ref_description="SGN-E693378 [LH_Ea01C16](-)">
      <seq>attaagtctcttgatgctgagaaagacattgagcttctgaagtttcatggttggaccatgtcccttgcttgtgcacgtgtatttcgtatctctactatgcttctgaagaaaggtgcagagagaggtctcaccccttgtgcaattggaggaatcatgtgcagggaagcactgaagaaggagtctatgattgagcagattgttgaagaagctgaagagagtgtgctcccaggaacaagtgaggcagcattcatgcagtctgtttcggtcatcatggatcgaccccttggtgacctgattaagtaaatatgtatgtatgaagatgtaaattttgtgcatatattaatagttacctggttgaaactaaattgtgggaaagggtgggatgttaatgtggtgtttgtaggggctcttttaacttgaaataattaaatggttgttatgtggaaaaaatatgactgataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="135346" stop="136417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135646" g_stop="136114" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="476"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E693378" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135646" e_stop="136114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACTCTCTTGATGCTGAGAAAGATATTGAGCTTCTGAAGTTTCATGGTTGGACCATGTCCCTTGCTTGTGCACGTGTATTTCGTATCTCTACTATGCTTCTGAAGAAAGGTGCAGAGAGAGGTCTCACCCCTTGTGCAATTGGAGGAATCATGTGCAGGGAAGCACTGAAGAAGGAGTCTATGATTGAGCAGATTGTTGAAGAAGCTGAAGAGAGTGTGCTCCCAGGAACAAGTGAGGCAGCATTCTTGCAGTCTGTTTCGGTCATCATGGATCGACGCCTTGGTGACCTGATTAAGTAAATATGTATGTATGAAGATGTAAATTTTGTGCATATATTAATAGTTACCTGGTTGAAACTAAATTCTGGGAAAGGGTGGGATGTTAATGTGGTGTTTGTAGGGGGGCTCTTTTAACTTGAAATATTTAGCTTTTTGTTATTGTGGAAAAAAGTATGACTTGATAAAT</genome_strand>
        <mrna_strand>ATTAAGTCTCTTGATGCTGAGAAAGACATTGAGCTTCTGAAGTTTCATGGTTGGACCATGTCCCTTGCTTGTGCACGTGTATTTCGTATCTCTACTATGCTTCTGAAGAAAGGTGCAGAGAGAGGTCTCACCCCTTGTGCAATTGGAGGAATCATGTGCAGGGAAGCACTGAAGAAGGAGTCTATGATTGAGCAGATTGTTGAAGAAGCTGAAGAGAGTGTGCTCCCAGGAACAAGTGAGGCAGCATTCATGCAGTCTGTTTCGGTCATCATGGATCGACCCCTTGGTGACCTGATTAAGTAAATATGTATGTATGAAGATGTAAATTTTGTGCATATATTAATAGTTACCTGGTTGAAACTAAATTGTGGGAAAGGGTGGGATGTTAATGTGGTGTTTGTA--GGGGCTCTTTTAACTTGAAATAATTAAATGGTTGTTA-TGTGGAAAAAA-TATGAC-TGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417328" ref_strand="+" ref_description="SGN-E417328 [STM-25-A16]">
      <seq>tagtttttgctaatatgttctaattacaacaaaaaggaaattacaacatttatcatttaatgaagaggtatctctagaatgttgcagatttgctctttagtcagttcaccaataaagcaaaattgcaactaaacggcttataaattattgcactttggaattaaataataatggtacatacttatttatataccaactgcaaaaaccataaatctgatatttataccttccttttaagtacttagccctgccaagaaagacaccccagttgaaggcaaccaagatgatccataaataaactttgatacagtgaacttgctggcctcttcgacagacttaatcactcgataccctggccaagtaacgcgttgccccacggctgctcctggcccaaagttcatgtattcaccataatacaatgtgttaagcgcgaaatcaccattccactcaagccaaccatgtgggtgtatatgatcacccatgttagataacatgtaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="+" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="136583" stop="137436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136882" g_stop="137389" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="+" ref_id="SGN-E417328" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136882" e_stop="137389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTGCTAGTATGTTCTAATTACAACAAAAAAAGAAATTACAACATTTATCATTTAATGAAGAGGTATCTCTAGAATGTTGCAAACTTGCTCTTTAGTCAGTTCACCAATAAAGCAAAATTGCAACT-TACAGCTTATAAATTATTACACTTAAGAATTAAATAACAATGGTACATACTTATTATTTATATATACCGACTGCAAAAAGACATAAATCTGATATTTATACCTTTCTTTTAAGTACTTAGCCCTGCCAAGAAAGACACCCCAGTTGAAGGCAACCAAGATGATCCATAAATAAACTTTGATACAGTGAACTTGCTGGCCTCTTCGACAGACTTAATCACCCGATACCCTGGCCAAGTGACGCGTTGCCCTACTGCTGCTCCTGGCCCAAAGTTCATGTATTCACCATAATACAATGTGTTCAGCGCAAAATCACCATTCCACTCAAGCCAACCATGTGGGTGTATATGATCACCCATGTTAGATAACATGTATACTG</genome_strand>
        <mrna_strand>TAGTTTTTGCTAATATGTTCTAATTACAAC-AAAAAGGAAATTACAACATTTATCATTTAATGAAGAGGTATCTCTAGAATGTTGCAGATTTGCTCTTTAGTCAGTTCACCAATAAAGCAAAATTGCAACTAAACGGCTTATAAATTATTGCACTTTGGAATTAAATAATAATGGTACATAC---TTA-TT-TATATACCAACTGCAAAAA-CCATAAATCTGATATTTATACCTTCCTTTTAAGTACTTAGCCCTGCCAAGAAAGACACCCCAGTTGAAGGCAACCAAGATGATCCATAAATAAACTTTGATACAGTGAACTTGCTGGCCTCTTCGACAGACTTAATCACTCGATACCCTGGCCAAGTAACGCGTTGCCCCACGGCTGCTCCTGGCCCAAAGTTCATGTATTCACCATAATACAATGTGTTAAGCGCGAAATCACCATTCCACTCAAGCCAACCATGTGGGTGTATATGATCACCCATGTTAGATAACATGTAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417450" ref_strand="-" ref_description="SGN-E417450 [STM-25-O10]">
      <seq>ggggtgattaattctgtggaagaggccagcaagttcactgtatcaaagtttatttatggatcatcttggttgccttcaactggggtgtctttcttggcaggactaagtacttaaaaggaaggtataaatatcagatttatggtttttgcagttggtatataaataagtatgtaccattattatttaattccaaagtgcaataatttataagccgtttagttgcaattttgctttattggtgaactgactgaagagcaaatctgcaacattctagagatacctcttcattaaatgataaatgttgtaatttaaaaaaaagaatn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0031P17-aKfRF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0031P17.1" temp_strand="-" temp_description="C03HBa0031P17.1  AC238439.1 htgs_phase:2 submitted_to_sgn_as:gi|260903612|gb|AC238439.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0031p17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="137436" stop="136620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137234" g_stop="136920" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="321"/>
      <MATCH_line gen_id="C03HBa0031P17.1" gen_strand="-" ref_id="SGN-E417450" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0031P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417450" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="137234" e_stop="136920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTGATTAAGTCTGTCGAAGAGGCCAGCAAGTTCACTGTATCAAAGTTTATTTATGGATCATCTTGGTTGCCTTCAACTGGGGTGTCTTTCTTGGCAGGGCTAAGTACTTAAAAGAAAGGTATAAATATCAGATTTATGTCTTTTTGCAGTCGGTATATATAAATAATAAGTATGTACCATTGTTATTTAATTCTTAAGTGTAATAATTTATAAGCTG-TAAGTTGCAATTTTGCTTTATTGGTGAACTGACTAAAGAGCAAGTTTGCAACATTCTAGAGATACCTCTTCATTAAATGATAAATGTTGTAATTT</genome_strand>
        <mrna_strand>GGGGTGATTAATTCTGTGGAAGAGGCCAGCAAGTTCACTGTATCAAAGTTTATTTATGGATCATCTTGGTTGCCTTCAACTGGGGTGTCTTTCTTGGCAGGACTAAGTACTTAAAAGGAAGGTATAAATATCAGATTTATG-GTTTTTGCAGTTGG--TATAT--A-AATAAGTATGTACCATTATTATTTAATTCCAAAGTGCAATAATTTATAAGCCGTTTAGTTGCAATTTTGCTTTATTGGTGAACTGACTGAAGAGCAAATCTGCAACATTCTAGAGATACCTCTTCATTAAATGATAAATGTTGTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>134</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5788" PGL_stop="20897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5788" e_stop="5908"/>
            <exon e_start="10933" e_stop="11070"/>
            <exon e_start="11306" e_stop="11420"/>
            <exon e_start="11832" e_stop="12069"/>
            <exon e_start="12887" e_stop="13078"/>
            <exon e_start="13176" e_stop="13496"/>
            <exon e_start="14287" e_stop="14509"/>
            <exon e_start="14882" e_stop="14908"/>
            <exon e_start="15576" e_stop="15621"/>
            <exon e_start="18020" e_stop="18030"/>
            <exon e_start="19939" e_stop="19976"/>
            <exon e_start="20263" e_stop="20329"/>
            <exon e_start="20452" e_stop="20609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.974" e_score="0.962"/>
          <exon-intron don_prob="0.981" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.974"/>
          <exon-intron don_prob="0.000" acc_prob="0.917" e_score="0.630"/>
          <exon-intron don_prob="0.879" acc_prob="0.907" e_score="0.587"/>
          <exon-intron don_prob="0.000" acc_prob="0.571" e_score="0.727"/>
          <exon-intron don_prob="0.155" acc_prob="0.000" e_score="0.605"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="0.612"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="5788" e_stop="5908" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.974">
            <gDNA_intron_boundary i_start="5909" i_stop="10932" i_length="5024"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10933" e_stop="11070" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.981">
            <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11306" e_stop="11420" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11832" e_stop="12069" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.927">
            <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12887" e_stop="13078" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13176" e_stop="13496" e_length="321"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.928">
            <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790"/>
          </intron>
          <exon e_serial="7" e_score="0.974">
            <gDNA_exon_boundary e_start="14287" e_stop="14509" e_length="223"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14510" i_stop="14881" i_length="372"/>
          </intron>
          <exon e_serial="8" e_score="0.630">
            <gDNA_exon_boundary e_start="14882" e_stop="14908" e_length="27"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.917">
            <gDNA_intron_boundary i_start="14909" i_stop="15575" i_length="667"/>
          </intron>
          <exon e_serial="9" e_score="0.587">
            <gDNA_exon_boundary e_start="15576" e_stop="15621" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="0.879" acc_prob="0.907">
            <gDNA_intron_boundary i_start="15622" i_stop="18019" i_length="2398"/>
          </intron>
          <exon e_serial="10" e_score="0.727">
            <gDNA_exon_boundary e_start="18020" e_stop="18030" e_length="11"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.571">
            <gDNA_intron_boundary i_start="18031" i_stop="19938" i_length="1908"/>
          </intron>
          <exon e_serial="11" e_score="0.605">
            <gDNA_exon_boundary e_start="19939" e_stop="19976" e_length="38"/>
          </exon>
          <intron i_serial="11" don_prob="0.155" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19977" i_stop="20262" i_length="286"/>
          </intron>
          <exon e_serial="12" e_score="0.612">
            <gDNA_exon_boundary e_start="20263" e_stop="20329" e_length="67"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20330" i_stop="20451" i_length="122"/>
          </intron>
          <exon e_serial="13" e_score="0.912">
            <gDNA_exon_boundary e_start="20452" e_stop="20609" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5788" stop="5908"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="12912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5803" stop="5908"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="12964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5812" stop="5908"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5821" stop="5908"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5822" stop="5908"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11401" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11989" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13496"/>
              <exon start="14287" stop="14320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12962" stop="13078"/>
              <exon start="13176" stop="13496"/>
              <exon start="14287" stop="14350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13346" stop="13496"/>
              <exon start="14287" stop="14509"/>
              <exon start="14882" stop="14908"/>
              <exon start="15576" stop="15621"/>
              <exon start="18020" stop="18030"/>
              <exon start="19939" stop="19976"/>
              <exon start="20263" stop="20329"/>
              <exon start="20452" stop="20587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13357" stop="13496"/>
              <exon start="14287" stop="14481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13376" stop="13496"/>
              <exon start="14287" stop="14509"/>
              <exon start="14882" stop="14908"/>
              <exon start="15576" stop="15621"/>
              <exon start="18020" stop="18030"/>
              <exon start="19939" stop="19976"/>
              <exon start="20263" stop="20329"/>
              <exon start="20452" stop="20609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413946" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGAACTCCTCCACTCTTCCCCCCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAGGTTCAG : CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG : AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG : TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG : ATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAG : ACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAG : GGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCG : CCTTAGTTGTGGGCCTGAGGTGTGGGG : GCAAGACAAATGATAAGCTTGGGAAGGATCTTTTGCAGAACATACT : CTTACCATAGA : CTAGATGTGAACCTTCACGAGTAGAGAAAAAGCACTTG : CTTATGAAGTTTTGCTCTCAATGTATGACCTATTGTCTCCGTGTGTGCAGCCTCAGTTTCCAGCAGG : TTTGGGTTAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATAGATGAGTGGTTGTTCGTTCATTCAGAACAGGTATACAGAAAATGTTCTATCAATTTACAGCATCGTACTAGTTACTGAACTTTCGCTTAA</gDNA_template>
            <first_frame> V  R  T  P  P  L  F  P  P  *  R  R  Y  S  H  S  S  R  N  L  R  R  P  N  N  G  R  R  P  T  E  N  V  H  R  Q  *  E  G  S   : A  A  N  Q  S  *  G  I  R  C  A  *  S  I  A  Q  S  S  R  P  Q  *  F  P  H  F  C  C  Q  S  *  S  N  T  K  W  I  C  *  G  S  H  L  Q  F  Q   : E  T  *  G  C  N  A  G  V  W  S  *  N  *  A  P  *  R  *  C  Q  I  L  E  G  C  E  E  R  V  G  *  F  N  F  G  Y  T  S :   C  S  W  H  D  *  I  S  K  *  N  W  F  *  K  *  G  I  F  Q  W  A  E  *  G  G  D  H  *  T  N  L  K  F  *  *  I  C  S  C  H  L  C  P  A  A  K  A  *  W  N  S  D  Y  T  D  S  I  Y  E  G  H  N  R  N  C  C  F  A  W  E  G  R  *  *  *  S  Q  Q  :  I  S  L  G  L  S  W  A  R  N  H  V  R  S  C  F  Q  D  A  *  W  S  *  S  T  G  N  I  *  *  G  R  S  Y  K  *  K  F  W  F  S  W  T  W  S  F  N  W  E  T  L  G  *  Q  I  S  R  N  L  S  *  G  L  K  :  T  I  H  W  *  I  Y  C  *  *  P  S  E  E  A  *  H  K  E  A  K  I  P  Q  *  G  N  S  S  W  F  S  W  F  C  C  Q  Y  D  Q  Y  R  H  C  E  L  I  L  C  H  K  H  W  L  W  P  E  R  D  P  L  L  *  T  L  L  T  F  A  S  I  Q  N  K  G  *  H  A  A  G  T  T  S  Y  S  *  W  S  H  I  V  G  W  W  D  H  K  E  *  W  Y  I  L  P  R  R  E  :  G  S  Q  D  Q  I  S  N  E  F  W  K  A  E  C  T  *  K  L  L  *  D  *  D  P  V  E  G  A  A  V  E  K  G  K  I  C  G  *  F  T  E  R  T  N  I  T  G  P  C  K  V  Q  L  *  N  K  E  T  R  L  C  Q  V  S  C  T  K  L  I  L  C  F  S   : A  L  V  V  G  L  R  C  G   : G  K  T  N  D  K  L  G  K  D  L  L  Q  N  I  L :   L  P  *   : T  R  C  E  P  S  R  V  E  K  K  H  L  :  L  M  K  F  C  S  Q  C  M  T  Y  C  L  R  V  C  S  L  S  F  Q  Q   : V  W  V  N  F  S  I  R  C  R  L  M  P  V  *  F  R  F  R  *  I  F  I  D  E  W  L  F  V  H  S  E  Q  V  Y  R  K  C  S  I  N  L  Q  H  R  T  S  Y  *  T  F  A  * </first_frame>
            <second_frame>  S  E  L  L  H  S  S  P  L  N  G  D  T  L  T  L  L  G  I  S  G  D  P  T  M  D  G  G  Q  R  R  M  S  I  D  N  E  K  V  Q  :  L  P  I  S  P  K  A  L  G  V  H  D  P  S  L  N  Q  V  G  H  S  N  S  P  T  F  A  A  N  R  D  P  I  Q  N  G  S  A  E  A  V  I  C  N  S  K  :  K  L  E  D  A  M  Q  E  F  G  L  K  I  K  H  H  E  D  N  V  K  Y  L  K  A  V  K  N  E  L  D  D  S  I  L  D  I  R   : V  A  L  G  T  T  K  S  A  S  E  T  G  S  E  N  K  E  S  S  N  G  Q  N  E  E  E  T  I  E  Q  I  L  S  F  D  K  S  A  A  A  I  C  V  Q  L  Q  K  R  S  G  T  Q  I  T  Q  I  P  F  M  K  D  I  I  G  I  V  A  L  L  G  K  V  D  D  D  N  L  S  R :   S  L  S  D  Y  L  G  L  E  T  M  L  G  V  V  F  K  T  R  D  G  V  K  A  L  E  T  Y  D  R  E  G  R  I  N  K  S  S  G  F  H  G  L  G  A  S  I  G  R  P  L  D  D  R  Y  L  V  I  C  L  E  D  L  R :   P  Y  T  G  K  F  I  A  D  D  P  Q  R  R  L  D  I  K  K  P  R  Y  L  N  E  E  T  P  P  G  F  L  G  F  A  V  N  M  I  N  I  D  T  A  N  L  Y  C  V  T  S  T  G  Y  G  L  R  E  T  L  F  Y  R  L  F  S  R  L  Q  V  Y  K  T  R  A  D  M  L  Q  A  L  P  L  I  A  D  G  A  I  S  L  D  G  G  I  I  K  S  S  G  I  S  S  L  G  E  R :   E  V  K  I  K  F  P  M  S  S  G  R  P  N  V  P  E  N  Y  Y  E  T  E  I  R  L  K  E  L  Q  W  K  R  A  R  F  V  D  D  L  Q  R  E  Q  T  L  L  D  H  A  K  F  N  F  E  I  K  K  Q  D  F  V  K  F  L  A  R  S  S  S  Y  A  S  A  :  P  *  L  W  A  *  G  V  G  :  A  R  Q  M  I  S  L  G  R  I  F  C  R  T  Y   : S  Y  H  R  :  L  D  V  N  L  H  E  *  R  K  S  T  C :   L  *  S  F  A  L  N  V  *  P  I  V  S  V  C  A  A  S  V  S  S  R  :  F  G  L  I  S  A  L  G  A  G  L  C  Q  S  D  S  G  L  G  E  F  S  *  M  S  G  C  S  F  I  Q  N  R  Y  T  E  N  V  L  S  I  Y  S  I  V  L  V  T  E  L  S  L   </second_frame>
            <third_frame>   Q  N  S  S  T  L  P  P  L  T  A  I  L  S  L  F  S  E  S  P  A  T  Q  Q  W  T  A  A  N  G  E  C  P  *  T  M  R  R  F  S :   C  Q  S  V  L  R  H  *  V  C  M  I  H  R  S  I  K  *  A  T  V  I  P  P  L  L  L  P  I  V  I  Q  Y  K  M  D  L  L  R  Q  S  S  A  I  P  R :   N  L  R  M  Q  C  R  S  L  V  L  K  L  S  T  M  K  I  M  S  N  T  *  R  L  *  R  T  S  W  M  I  Q  F  W  I  Y  E  :  L  L  L  A  R  L  N  Q  Q  V  K  L  V  L  K  I  R  N  L  P  M  G  R  M  R  R  R  P  L  N  K  S  *  V  L  I  N  L  Q  L  P  S  V  S  S  C  K  S  V  V  E  L  R  L  H  R  F  H  L  *  R  T  *  *  E  L  L  L  C  L  G  R  S  M  M  I  I  S  A   : D  L  S  R  I  I  L  G  S  K  P  C  *  E  L  F  S  R  R  V  M  E  L  K  H  W  K  H  M  I  G  K  V  V  *  I  K  V  L  V  F  M  D  L  E  L  Q  L  G  D  P  W  M  T  D  I  S  *  S  V  L  R  T  *   : D  H  T  L  V  N  L  L  L  M  T  L  R  G  G  L  T  *  R  S  Q  D  T  S  M  R  K  L  L  L  V  F  L  V  L  L  S  I  *  S  I  S  T  L  R  T  Y  I  V  S  Q  A  L  V  M  A  *  E  R  P  S  S  I  D  S  S  H  V  C  K  Y  T  K  Q  G  L  T  C  C  R  H  Y  L  L  *  L  M  E  P  Y  R  W  M  V  G  S  *  R  V  V  V  Y  P  P  *  A  R   : G  K  S  R  S  N  F  Q  *  V  L  E  G  R  M  Y  L  K  T  I  M  R  L  R  S  G  *  R  S  C  S  G  K  G  Q  D  L  W  M  I  Y  R  E  N  K  H  Y  W  T  M  Q  S  S  T  L  K  *  R  N  K  T  L  S  S  F  L  H  E  A  H  P  M  L  Q  R :   L  S  C  G  P  E  V  W  G :   Q  D  K  *  *  A  W  E  G  S  F  A  E  H  T  :  L  T  I  D :   *  M  *  T  F  T  S  R  E  K  A  L   : A  Y  E  V  L  L  S  M  Y  D  L  L  S  P  C  V  Q  P  Q  F  P  A  G :   L  G  *  F  Q  H  *  V  Q  A  Y  A  S  L  I  Q  V  *  V  N  F  H  R  *  V  V  V  R  S  F  R  T  G  I  Q  K  M  F  Y  Q  F  T  A  S  Y  *  L  L  N  F  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5789" stop="5908"/>
                    <exon start="10933" stop="11070"/>
                    <exon start="11306" stop="11420"/>
                    <exon start="11832" stop="12069"/>
                    <exon start="12887" stop="13078"/>
                    <exon start="13176" stop="13496"/>
                    <exon start="14287" stop="14509"/>
                    <exon start="14882" stop="14887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1350</number_coding_nucleotides>
                  <number_encoded_amino_acids>450</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELLHSSPLNGDTLTLLGISGDPTMDGGQRRMSIDNEKVQLPISPKALGVHDPSLNQVGHSNSPTFAANRDPIQNGSAEAVICNSKKLEDAMQEFGLKIKHHEDNVKYLKAVKNELDDSILDIRVALGTTKSASETGSENKESSNGQNEEETIEQILSFDKSAAAICVQLQKRSGTQITQIPFMKDIIGIVALLGKVDDDNLSRSLSDYLGLETMLGVVFKTRDGVKALETYDREGRINKSSGFHGLGASIGRPLDDRYLVICLEDLRPYTGKFIADDPQRRLDIKKPRYLNEETPPGFLGFAVNMINIDTANLYCVTSTGYGLRETLFYRLFSRLQVYKTRADMLQALPLIADGAISLDGGIIKSSGISSLGEREVKIKFPMSSGRPNVPENYYETEIRLKELQWKRARFVDDLQREQTLLDHAKFNFEIKKQDFVKFLARSSSYASAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5788" e_stop="5902"/>
            <exon e_start="10933" e_stop="11070"/>
            <exon e_start="11306" e_stop="11420"/>
            <exon e_start="11832" e_stop="12069"/>
            <exon e_start="12887" e_stop="13078"/>
            <exon e_start="13176" e_stop="13496"/>
            <exon e_start="14287" e_stop="14509"/>
            <exon e_start="14882" e_stop="14908"/>
            <exon e_start="15576" e_stop="15621"/>
            <exon e_start="18020" e_stop="18030"/>
            <exon e_start="19939" e_stop="19976"/>
            <exon e_start="20263" e_stop="20329"/>
            <exon e_start="20452" e_stop="20609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.890" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.981" e_score="0.971"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.974"/>
          <exon-intron don_prob="0.000" acc_prob="0.917" e_score="0.630"/>
          <exon-intron don_prob="0.879" acc_prob="0.907" e_score="0.587"/>
          <exon-intron don_prob="0.000" acc_prob="0.571" e_score="0.727"/>
          <exon-intron don_prob="0.155" acc_prob="0.000" e_score="0.605"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="0.612"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5788" e_stop="5902" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.890" acc_prob="0.974">
            <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="10933" e_stop="11070" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.981">
            <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11306" e_stop="11420" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11832" e_stop="12069" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.927">
            <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12887" e_stop="13078" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13176" e_stop="13496" e_length="321"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.928">
            <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790"/>
          </intron>
          <exon e_serial="7" e_score="0.974">
            <gDNA_exon_boundary e_start="14287" e_stop="14509" e_length="223"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14510" i_stop="14881" i_length="372"/>
          </intron>
          <exon e_serial="8" e_score="0.630">
            <gDNA_exon_boundary e_start="14882" e_stop="14908" e_length="27"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.917">
            <gDNA_intron_boundary i_start="14909" i_stop="15575" i_length="667"/>
          </intron>
          <exon e_serial="9" e_score="0.587">
            <gDNA_exon_boundary e_start="15576" e_stop="15621" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="0.879" acc_prob="0.907">
            <gDNA_intron_boundary i_start="15622" i_stop="18019" i_length="2398"/>
          </intron>
          <exon e_serial="10" e_score="0.727">
            <gDNA_exon_boundary e_start="18020" e_stop="18030" e_length="11"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.571">
            <gDNA_intron_boundary i_start="18031" i_stop="19938" i_length="1908"/>
          </intron>
          <exon e_serial="11" e_score="0.605">
            <gDNA_exon_boundary e_start="19939" e_stop="19976" e_length="38"/>
          </exon>
          <intron i_serial="11" don_prob="0.155" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19977" i_stop="20262" i_length="286"/>
          </intron>
          <exon e_serial="12" e_score="0.612">
            <gDNA_exon_boundary e_start="20263" e_stop="20329" e_length="67"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20330" i_stop="20451" i_length="122"/>
          </intron>
          <exon e_serial="13" e_score="0.912">
            <gDNA_exon_boundary e_start="20452" e_stop="20609" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5788" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="11969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5788" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5795" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5813" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5868" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="12962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11401" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11989" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13496"/>
              <exon start="14287" stop="14320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12962" stop="13078"/>
              <exon start="13176" stop="13496"/>
              <exon start="14287" stop="14350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13346" stop="13496"/>
              <exon start="14287" stop="14509"/>
              <exon start="14882" stop="14908"/>
              <exon start="15576" stop="15621"/>
              <exon start="18020" stop="18030"/>
              <exon start="19939" stop="19976"/>
              <exon start="20263" stop="20329"/>
              <exon start="20452" stop="20587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13357" stop="13496"/>
              <exon start="14287" stop="14481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13376" stop="13496"/>
              <exon start="14287" stop="14509"/>
              <exon start="14882" stop="14908"/>
              <exon start="15576" stop="15621"/>
              <exon start="18020" stop="18030"/>
              <exon start="19939" stop="19976"/>
              <exon start="20263" stop="20329"/>
              <exon start="20452" stop="20609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413946" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGAACTCCTCCACTCTTCCCCCCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAG : CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG : AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG : TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG : ATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAG : ACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAG : GGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCG : CCTTAGTTGTGGGCCTGAGGTGTGGGG : GCAAGACAAATGATAAGCTTGGGAAGGATCTTTTGCAGAACATACT : CTTACCATAGA : CTAGATGTGAACCTTCACGAGTAGAGAAAAAGCACTTG : CTTATGAAGTTTTGCTCTCAATGTATGACCTATTGTCTCCGTGTGTGCAGCCTCAGTTTCCAGCAGG : TTTGGGTTAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATAGATGAGTGGTTGTTCGTTCATTCAGAACAGGTATACAGAAAATGTTCTATCAATTTACAGCATCGTACTAGTTACTGAACTTTCGCTTAA</gDNA_template>
            <first_frame> V  R  T  P  P  L  F  P  P  *  R  R  Y  S  H  S  S  R  N  L  R  R  P  N  N  G  R  R  P  T  E  N  V  H  R  Q  *  E   : A  A  N  Q  S  *  G  I  R  C  A  *  S  I  A  Q  S  S  R  P  Q  *  F  P  H  F  C  C  Q  S  *  S  N  T  K  W  I  C  *  G  S  H  L  Q  F  Q   : E  T  *  G  C  N  A  G  V  W  S  *  N  *  A  P  *  R  *  C  Q  I  L  E  G  C  E  E  R  V  G  *  F  N  F  G  Y  T  S :   C  S  W  H  D  *  I  S  K  *  N  W  F  *  K  *  G  I  F  Q  W  A  E  *  G  G  D  H  *  T  N  L  K  F  *  *  I  C  S  C  H  L  C  P  A  A  K  A  *  W  N  S  D  Y  T  D  S  I  Y  E  G  H  N  R  N  C  C  F  A  W  E  G  R  *  *  *  S  Q  Q  :  I  S  L  G  L  S  W  A  R  N  H  V  R  S  C  F  Q  D  A  *  W  S  *  S  T  G  N  I  *  *  G  R  S  Y  K  *  K  F  W  F  S  W  T  W  S  F  N  W  E  T  L  G  *  Q  I  S  R  N  L  S  *  G  L  K  :  T  I  H  W  *  I  Y  C  *  *  P  S  E  E  A  *  H  K  E  A  K  I  P  Q  *  G  N  S  S  W  F  S  W  F  C  C  Q  Y  D  Q  Y  R  H  C  E  L  I  L  C  H  K  H  W  L  W  P  E  R  D  P  L  L  *  T  L  L  T  F  A  S  I  Q  N  K  G  *  H  A  A  G  T  T  S  Y  S  *  W  S  H  I  V  G  W  W  D  H  K  E  *  W  Y  I  L  P  R  R  E  :  G  S  Q  D  Q  I  S  N  E  F  W  K  A  E  C  T  *  K  L  L  *  D  *  D  P  V  E  G  A  A  V  E  K  G  K  I  C  G  *  F  T  E  R  T  N  I  T  G  P  C  K  V  Q  L  *  N  K  E  T  R  L  C  Q  V  S  C  T  K  L  I  L  C  F  S   : A  L  V  V  G  L  R  C  G   : G  K  T  N  D  K  L  G  K  D  L  L  Q  N  I  L :   L  P  *   : T  R  C  E  P  S  R  V  E  K  K  H  L  :  L  M  K  F  C  S  Q  C  M  T  Y  C  L  R  V  C  S  L  S  F  Q  Q   : V  W  V  N  F  S  I  R  C  R  L  M  P  V  *  F  R  F  R  *  I  F  I  D  E  W  L  F  V  H  S  E  Q  V  Y  R  K  C  S  I  N  L  Q  H  R  T  S  Y  *  T  F  A  * </first_frame>
            <second_frame>  S  E  L  L  H  S  S  P  L  N  G  D  T  L  T  L  L  G  I  S  G  D  P  T  M  D  G  G  Q  R  R  M  S  I  D  N  E  K  :  L  P  I  S  P  K  A  L  G  V  H  D  P  S  L  N  Q  V  G  H  S  N  S  P  T  F  A  A  N  R  D  P  I  Q  N  G  S  A  E  A  V  I  C  N  S  K  :  K  L  E  D  A  M  Q  E  F  G  L  K  I  K  H  H  E  D  N  V  K  Y  L  K  A  V  K  N  E  L  D  D  S  I  L  D  I  R   : V  A  L  G  T  T  K  S  A  S  E  T  G  S  E  N  K  E  S  S  N  G  Q  N  E  E  E  T  I  E  Q  I  L  S  F  D  K  S  A  A  A  I  C  V  Q  L  Q  K  R  S  G  T  Q  I  T  Q  I  P  F  M  K  D  I  I  G  I  V  A  L  L  G  K  V  D  D  D  N  L  S  R :   S  L  S  D  Y  L  G  L  E  T  M  L  G  V  V  F  K  T  R  D  G  V  K  A  L  E  T  Y  D  R  E  G  R  I  N  K  S  S  G  F  H  G  L  G  A  S  I  G  R  P  L  D  D  R  Y  L  V  I  C  L  E  D  L  R :   P  Y  T  G  K  F  I  A  D  D  P  Q  R  R  L  D  I  K  K  P  R  Y  L  N  E  E  T  P  P  G  F  L  G  F  A  V  N  M  I  N  I  D  T  A  N  L  Y  C  V  T  S  T  G  Y  G  L  R  E  T  L  F  Y  R  L  F  S  R  L  Q  V  Y  K  T  R  A  D  M  L  Q  A  L  P  L  I  A  D  G  A  I  S  L  D  G  G  I  I  K  S  S  G  I  S  S  L  G  E  R :   E  V  K  I  K  F  P  M  S  S  G  R  P  N  V  P  E  N  Y  Y  E  T  E  I  R  L  K  E  L  Q  W  K  R  A  R  F  V  D  D  L  Q  R  E  Q  T  L  L  D  H  A  K  F  N  F  E  I  K  K  Q  D  F  V  K  F  L  A  R  S  S  S  Y  A  S  A  :  P  *  L  W  A  *  G  V  G  :  A  R  Q  M  I  S  L  G  R  I  F  C  R  T  Y   : S  Y  H  R  :  L  D  V  N  L  H  E  *  R  K  S  T  C :   L  *  S  F  A  L  N  V  *  P  I  V  S  V  C  A  A  S  V  S  S  R  :  F  G  L  I  S  A  L  G  A  G  L  C  Q  S  D  S  G  L  G  E  F  S  *  M  S  G  C  S  F  I  Q  N  R  Y  T  E  N  V  L  S  I  Y  S  I  V  L  V  T  E  L  S  L   </second_frame>
            <third_frame>   Q  N  S  S  T  L  P  P  L  T  A  I  L  S  L  F  S  E  S  P  A  T  Q  Q  W  T  A  A  N  G  E  C  P  *  T  M  R  S :   C  Q  S  V  L  R  H  *  V  C  M  I  H  R  S  I  K  *  A  T  V  I  P  P  L  L  L  P  I  V  I  Q  Y  K  M  D  L  L  R  Q  S  S  A  I  P  R :   N  L  R  M  Q  C  R  S  L  V  L  K  L  S  T  M  K  I  M  S  N  T  *  R  L  *  R  T  S  W  M  I  Q  F  W  I  Y  E  :  L  L  L  A  R  L  N  Q  Q  V  K  L  V  L  K  I  R  N  L  P  M  G  R  M  R  R  R  P  L  N  K  S  *  V  L  I  N  L  Q  L  P  S  V  S  S  C  K  S  V  V  E  L  R  L  H  R  F  H  L  *  R  T  *  *  E  L  L  L  C  L  G  R  S  M  M  I  I  S  A   : D  L  S  R  I  I  L  G  S  K  P  C  *  E  L  F  S  R  R  V  M  E  L  K  H  W  K  H  M  I  G  K  V  V  *  I  K  V  L  V  F  M  D  L  E  L  Q  L  G  D  P  W  M  T  D  I  S  *  S  V  L  R  T  *   : D  H  T  L  V  N  L  L  L  M  T  L  R  G  G  L  T  *  R  S  Q  D  T  S  M  R  K  L  L  L  V  F  L  V  L  L  S  I  *  S  I  S  T  L  R  T  Y  I  V  S  Q  A  L  V  M  A  *  E  R  P  S  S  I  D  S  S  H  V  C  K  Y  T  K  Q  G  L  T  C  C  R  H  Y  L  L  *  L  M  E  P  Y  R  W  M  V  G  S  *  R  V  V  V  Y  P  P  *  A  R   : G  K  S  R  S  N  F  Q  *  V  L  E  G  R  M  Y  L  K  T  I  M  R  L  R  S  G  *  R  S  C  S  G  K  G  Q  D  L  W  M  I  Y  R  E  N  K  H  Y  W  T  M  Q  S  S  T  L  K  *  R  N  K  T  L  S  S  F  L  H  E  A  H  P  M  L  Q  R :   L  S  C  G  P  E  V  W  G :   Q  D  K  *  *  A  W  E  G  S  F  A  E  H  T  :  L  T  I  D :   *  M  *  T  F  T  S  R  E  K  A  L   : A  Y  E  V  L  L  S  M  Y  D  L  L  S  P  C  V  Q  P  Q  F  P  A  G :   L  G  *  F  Q  H  *  V  Q  A  Y  A  S  L  I  Q  V  *  V  N  F  H  R  *  V  V  V  R  S  F  R  T  G  I  Q  K  M  F  Y  Q  F  T  A  S  Y  *  L  L  N  F  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5789" stop="5902"/>
                    <exon start="10933" stop="11070"/>
                    <exon start="11306" stop="11420"/>
                    <exon start="11832" stop="12069"/>
                    <exon start="12887" stop="13078"/>
                    <exon start="13176" stop="13496"/>
                    <exon start="14287" stop="14509"/>
                    <exon start="14882" stop="14887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1344</number_coding_nucleotides>
                  <number_encoded_amino_acids>448</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELLHSSPLNGDTLTLLGISGDPTMDGGQRRMSIDNEKLPISPKALGVHDPSLNQVGHSNSPTFAANRDPIQNGSAEAVICNSKKLEDAMQEFGLKIKHHEDNVKYLKAVKNELDDSILDIRVALGTTKSASETGSENKESSNGQNEEETIEQILSFDKSAAAICVQLQKRSGTQITQIPFMKDIIGIVALLGKVDDDNLSRSLSDYLGLETMLGVVFKTRDGVKALETYDREGRINKSSGFHGLGASIGRPLDDRYLVICLEDLRPYTGKFIADDPQRRLDIKKPRYLNEETPPGFLGFAVNMINIDTANLYCVTSTGYGLRETLFYRLFSRLQVYKTRADMLQALPLIADGAISLDGGIIKSSGISSLGEREVKIKFPMSSGRPNVPENYYETEIRLKELQWKRARFVDDLQREQTLLDHAKFNFEIKKQDFVKFLARSSSYASAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="5788" e_stop="5902"/>
            <exon e_start="10933" e_stop="11070"/>
            <exon e_start="11306" e_stop="11420"/>
            <exon e_start="11832" e_stop="12069"/>
            <exon e_start="12887" e_stop="13078"/>
            <exon e_start="13176" e_stop="13496"/>
            <exon e_start="14287" e_stop="14509"/>
            <exon e_start="18300" e_stop="18318"/>
            <exon e_start="20114" e_stop="20126"/>
            <exon e_start="20313" e_stop="20534"/>
            <exon e_start="20604" e_stop="20732"/>
            <exon e_start="20870" e_stop="20897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.890" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.981" e_score="0.971"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.286" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.569" e_score="0.579"/>
          <exon-intron don_prob="0.970" acc_prob="0.992" e_score="0.385"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.833"/>
          <exon-intron don_prob="0.774" acc_prob="0.925" e_score="0.992"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5788" e_stop="5902" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.890" acc_prob="0.974">
            <gDNA_intron_boundary i_start="5903" i_stop="10932" i_length="5030"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="10933" e_stop="11070" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.981">
            <gDNA_intron_boundary i_start="11071" i_stop="11305" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11306" e_stop="11420" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11421" i_stop="11831" i_length="411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11832" e_stop="12069" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.927">
            <gDNA_intron_boundary i_start="12070" i_stop="12886" i_length="817"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12887" e_stop="13078" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13079" i_stop="13175" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13176" e_stop="13496" e_length="321"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.928">
            <gDNA_intron_boundary i_start="13497" i_stop="14286" i_length="790"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14287" e_stop="14509" e_length="223"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.286">
            <gDNA_intron_boundary i_start="14510" i_stop="18299" i_length="3790"/>
          </intron>
          <exon e_serial="8" e_score="0.579">
            <gDNA_exon_boundary e_start="18300" e_stop="18318" e_length="19"/>
          </exon>
          <intron i_serial="8" don_prob="0.955" acc_prob="0.569">
            <gDNA_intron_boundary i_start="18319" i_stop="20113" i_length="1795"/>
          </intron>
          <exon e_serial="9" e_score="0.385">
            <gDNA_exon_boundary e_start="20114" e_stop="20126" e_length="13"/>
          </exon>
          <intron i_serial="9" don_prob="0.970" acc_prob="0.992">
            <gDNA_intron_boundary i_start="20127" i_stop="20312" i_length="186"/>
          </intron>
          <exon e_serial="10" e_score="0.833">
            <gDNA_exon_boundary e_start="20313" e_stop="20534" e_length="222"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20535" i_stop="20603" i_length="69"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="20604" e_stop="20732" e_length="129"/>
          </exon>
          <intron i_serial="11" don_prob="0.774" acc_prob="0.925">
            <gDNA_intron_boundary i_start="20733" i_stop="20869" i_length="137"/>
          </intron>
          <exon e_serial="12" e_score="0.571">
            <gDNA_exon_boundary e_start="20870" e_stop="20897" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5788" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="11969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5788" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5795" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5812" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13496"/>
              <exon start="14287" stop="14509"/>
              <exon start="18300" stop="18318"/>
              <exon start="20114" stop="20126"/>
              <exon start="20313" stop="20534"/>
              <exon start="20604" stop="20732"/>
              <exon start="20870" stop="20897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5813" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5868" stop="5902"/>
              <exon start="10933" stop="11070"/>
              <exon start="11306" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="12962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11401" stop="11420"/>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11832" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11989" stop="12069"/>
              <exon start="12887" stop="13078"/>
              <exon start="13176" stop="13496"/>
              <exon start="14287" stop="14320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12962" stop="13078"/>
              <exon start="13176" stop="13496"/>
              <exon start="14287" stop="14350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13357" stop="13496"/>
              <exon start="14287" stop="14481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGAACTCCTCCACTCTTCCCCCCTTAACGGCGATACTCTCACTCTTCTCGGAATCTCCGGCGACCCAACAATGGACGGCGGCCAACGGAGAATGTCCATAGACAATGAGAAG : CTGCCAATCAGTCCTAAGGCATTAGGTGTGCATGATCCATCGCTCAATCAAGTAGGCCACAGTAATTCCCCCACTTTTGCTGCCAATCGTGATCCAATACAAAATGGATCTGCTGAGGCAGTCATCTGCAATTCCAAG : AAACTTGAGGATGCAATGCAGGAGTTTGGTCTTAAAATTAAGCACCATGAAGATAATGTCAAATACTTGAAGGCTGTGAAGAACGAGTTGGATGATTCAATTTTGGATATACGAG : TTGCTCTTGGCACGACTAAATCAGCAAGTGAAACTGGTTCTGAAAATAAGGAATCTTCCAATGGGCAGAATGAGGAGGAGACCATTGAACAAATCTTAAGTTTTGATAAATCTGCAGCTGCCATCTGTGTCCAGCTGCAAAAGCGTAGTGGAACTCAGATTACACAGATTCCATTTATGAAGGACATAATAGGAATTGTTGCTTTGCTTGGGAAGGTCGATGATGATAATCTCAGCAG : ATCTCTCTCGGATTATCTTGGGCTCGAAACCATGTTAGGAGTTGTTTTCAAGACGCGTGATGGAGTTAAAGCACTGGAAACATATGATAGGGAAGGTCGTATAAATAAAAGTTCTGGTTTTCATGGACTTGGAGCTTCAATTGGGAGACCCTTGGATGACAGATATCTCGTAATCTGTCTTGAGGACTTAAG : ACCATACACTGGTAAATTTATTGCTGATGACCCTCAGAGGAGGCTTGACATAAAGAAGCCAAGATACCTCAATGAGGAAACTCCTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATCGACACTGCGAACTTATATTGTGTCACAAGCACTGGTTATGGCCTGAGAGAGACCCTCTTCTATAGACTCTTCTCACGTTTGCAAGTATACAAAACAAGGGCTGACATGCTGCAGGCACTACCTCTTATAGCTGATGGAGCCATATCGTTGGATGGTGGGATCATAAAGAGTAGTGGTATATCCTCCCTAGGCGAGAG : GGAAGTCAAGATCAAATTTCCAATGAGTTCTGGAAGGCCGAATGTACCTGAAAACTATTATGAGACTGAGATCCGGTTGAAGGAGCTGCAGTGGAAAAGGGCAAGATTTGTGGATGATTTACAGAGAGAACAAACATTACTGGACCATGCAAAGTTCAACTTTGAAATAAAGAAACAAGACTTTGTCAAGTTTCTTGCACGAAGCTCATCCTATGCTTCAGCG : CCATACATTTTCCTCTTGT : AGATGCAAGGGAG : CCTCAGTTTCCAGCAGGAGGGGAGCGGTCAACTCCGATATCATGATTGTGTGGGAACTTTGAGACCATTTATCAGTTGATTTGAAGCTTCAGCTTTTATTTTATATTCTGGATAATGACCTCTTGGATAATATGTGCAGTTTGGGTTAATTTCAGCATTAGGTGCAGGCTTATGCCAGTCTGATTCAGGTTTAGGTGAATTTTCATAGATGAGTGGTTGTTC : GCTTAACGTTAAGGTTGATCTGTATTGCAACTTGCATCCCCCCTCTTATTAGCTATTGATATCTAGTATCAGTTGACAAACTGGCTATGCTTATGATTGCGGGTTTGAGATGAATATGAATGTAGAAAA : TTGAAACTAAGATAAGAAAAGGCCAAAT</gDNA_template>
            <first_frame> V  R  T  P  P  L  F  P  P  *  R  R  Y  S  H  S  S  R  N  L  R  R  P  N  N  G  R  R  P  T  E  N  V  H  R  Q  *  E   : A  A  N  Q  S  *  G  I  R  C  A  *  S  I  A  Q  S  S  R  P  Q  *  F  P  H  F  C  C  Q  S  *  S  N  T  K  W  I  C  *  G  S  H  L  Q  F  Q   : E  T  *  G  C  N  A  G  V  W  S  *  N  *  A  P  *  R  *  C  Q  I  L  E  G  C  E  E  R  V  G  *  F  N  F  G  Y  T  S :   C  S  W  H  D  *  I  S  K  *  N  W  F  *  K  *  G  I  F  Q  W  A  E  *  G  G  D  H  *  T  N  L  K  F  *  *  I  C  S  C  H  L  C  P  A  A  K  A  *  W  N  S  D  Y  T  D  S  I  Y  E  G  H  N  R  N  C  C  F  A  W  E  G  R  *  *  *  S  Q  Q  :  I  S  L  G  L  S  W  A  R  N  H  V  R  S  C  F  Q  D  A  *  W  S  *  S  T  G  N  I  *  *  G  R  S  Y  K  *  K  F  W  F  S  W  T  W  S  F  N  W  E  T  L  G  *  Q  I  S  R  N  L  S  *  G  L  K  :  T  I  H  W  *  I  Y  C  *  *  P  S  E  E  A  *  H  K  E  A  K  I  P  Q  *  G  N  S  S  W  F  S  W  F  C  C  Q  Y  D  Q  Y  R  H  C  E  L  I  L  C  H  K  H  W  L  W  P  E  R  D  P  L  L  *  T  L  L  T  F  A  S  I  Q  N  K  G  *  H  A  A  G  T  T  S  Y  S  *  W  S  H  I  V  G  W  W  D  H  K  E  *  W  Y  I  L  P  R  R  E  :  G  S  Q  D  Q  I  S  N  E  F  W  K  A  E  C  T  *  K  L  L  *  D  *  D  P  V  E  G  A  A  V  E  K  G  K  I  C  G  *  F  T  E  R  T  N  I  T  G  P  C  K  V  Q  L  *  N  K  E  T  R  L  C  Q  V  S  C  T  K  L  I  L  C  F  S   : A  I  H  F  P  L  V :   D  A  R  E  :  P  Q  F  P  A  G  G  E  R  S  T  P  I  S  *  L  C  G  N  F  E  T  I  Y  Q  L  I  *  S  F  S  F  Y  F  I  F  W  I  M  T  S  W  I  I  C  A  V  W  V  N  F  S  I  R  C  R  L  M  P  V  *  F  R  F  R  *  I  F  I  D  E  W  L  F  :  A  *  R  *  G  *  S  V  L  Q  L  A  S  P  L  L  L  A  I  D  I  *  Y  Q  L  T  N  W  L  C  L  *  L  R  V  *  D  E  Y  E  C  R  K  :  L  K  L  R  *  E  K  A  K  </first_frame>
            <second_frame>  S  E  L  L  H  S  S  P  L  N  G  D  T  L  T  L  L  G  I  S  G  D  P  T  M  D  G  G  Q  R  R  M  S  I  D  N  E  K  :  L  P  I  S  P  K  A  L  G  V  H  D  P  S  L  N  Q  V  G  H  S  N  S  P  T  F  A  A  N  R  D  P  I  Q  N  G  S  A  E  A  V  I  C  N  S  K  :  K  L  E  D  A  M  Q  E  F  G  L  K  I  K  H  H  E  D  N  V  K  Y  L  K  A  V  K  N  E  L  D  D  S  I  L  D  I  R   : V  A  L  G  T  T  K  S  A  S  E  T  G  S  E  N  K  E  S  S  N  G  Q  N  E  E  E  T  I  E  Q  I  L  S  F  D  K  S  A  A  A  I  C  V  Q  L  Q  K  R  S  G  T  Q  I  T  Q  I  P  F  M  K  D  I  I  G  I  V  A  L  L  G  K  V  D  D  D  N  L  S  R :   S  L  S  D  Y  L  G  L  E  T  M  L  G  V  V  F  K  T  R  D  G  V  K  A  L  E  T  Y  D  R  E  G  R  I  N  K  S  S  G  F  H  G  L  G  A  S  I  G  R  P  L  D  D  R  Y  L  V  I  C  L  E  D  L  R :   P  Y  T  G  K  F  I  A  D  D  P  Q  R  R  L  D  I  K  K  P  R  Y  L  N  E  E  T  P  P  G  F  L  G  F  A  V  N  M  I  N  I  D  T  A  N  L  Y  C  V  T  S  T  G  Y  G  L  R  E  T  L  F  Y  R  L  F  S  R  L  Q  V  Y  K  T  R  A  D  M  L  Q  A  L  P  L  I  A  D  G  A  I  S  L  D  G  G  I  I  K  S  S  G  I  S  S  L  G  E  R :   E  V  K  I  K  F  P  M  S  S  G  R  P  N  V  P  E  N  Y  Y  E  T  E  I  R  L  K  E  L  Q  W  K  R  A  R  F  V  D  D  L  Q  R  E  Q  T  L  L  D  H  A  K  F  N  F  E  I  K  K  Q  D  F  V  K  F  L  A  R  S  S  S  Y  A  S  A  :  P  Y  I  F  L  L   : *  M  Q  G  S :   L  S  F  Q  Q  E  G  S  G  Q  L  R  Y  H  D  C  V  G  T  L  R  P  F  I  S  *  F  E  A  S  A  F  I  L  Y  S  G  *  *  P  L  G  *  Y  V  Q  F  G  L  I  S  A  L  G  A  G  L  C  Q  S  D  S  G  L  G  E  F  S  *  M  S  G  C  S :   L  N  V  K  V  D  L  Y  C  N  L  H  P  P  S  Y  *  L  L  I  S  S  I  S  *  Q  T  G  Y  A  Y  D  C  G  F  E  M  N  M  N  V  E  N :   *  N  *  D  K  K  R  P  N </second_frame>
            <third_frame>   Q  N  S  S  T  L  P  P  L  T  A  I  L  S  L  F  S  E  S  P  A  T  Q  Q  W  T  A  A  N  G  E  C  P  *  T  M  R  S :   C  Q  S  V  L  R  H  *  V  C  M  I  H  R  S  I  K  *  A  T  V  I  P  P  L  L  L  P  I  V  I  Q  Y  K  M  D  L  L  R  Q  S  S  A  I  P  R :   N  L  R  M  Q  C  R  S  L  V  L  K  L  S  T  M  K  I  M  S  N  T  *  R  L  *  R  T  S  W  M  I  Q  F  W  I  Y  E  :  L  L  L  A  R  L  N  Q  Q  V  K  L  V  L  K  I  R  N  L  P  M  G  R  M  R  R  R  P  L  N  K  S  *  V  L  I  N  L  Q  L  P  S  V  S  S  C  K  S  V  V  E  L  R  L  H  R  F  H  L  *  R  T  *  *  E  L  L  L  C  L  G  R  S  M  M  I  I  S  A   : D  L  S  R  I  I  L  G  S  K  P  C  *  E  L  F  S  R  R  V  M  E  L  K  H  W  K  H  M  I  G  K  V  V  *  I  K  V  L  V  F  M  D  L  E  L  Q  L  G  D  P  W  M  T  D  I  S  *  S  V  L  R  T  *   : D  H  T  L  V  N  L  L  L  M  T  L  R  G  G  L  T  *  R  S  Q  D  T  S  M  R  K  L  L  L  V  F  L  V  L  L  S  I  *  S  I  S  T  L  R  T  Y  I  V  S  Q  A  L  V  M  A  *  E  R  P  S  S  I  D  S  S  H  V  C  K  Y  T  K  Q  G  L  T  C  C  R  H  Y  L  L  *  L  M  E  P  Y  R  W  M  V  G  S  *  R  V  V  V  Y  P  P  *  A  R   : G  K  S  R  S  N  F  Q  *  V  L  E  G  R  M  Y  L  K  T  I  M  R  L  R  S  G  *  R  S  C  S  G  K  G  Q  D  L  W  M  I  Y  R  E  N  K  H  Y  W  T  M  Q  S  S  T  L  K  *  R  N  K  T  L  S  S  F  L  H  E  A  H  P  M  L  Q  R :   H  T  F  S  S  C  :  R  C  K  G   : A  S  V  S  S  R  R  G  A  V  N  S  D  I  M  I  V  W  E  L  *  D  H  L  S  V  D  L  K  L  Q  L  L  F  Y  I  L  D  N  D  L  L  D  N  M  C  S  L  G  *  F  Q  H  *  V  Q  A  Y  A  S  L  I  Q  V  *  V  N  F  H  R  *  V  V  V   : R  L  T  L  R  L  I  C  I  A  T  C  I  P  P  L  I  S  Y  *  Y  L  V  S  V  D  K  L  A  M  L  M  I  A  G  L  R  *  I  *  M  *  K   : I  E  T  K  I  R  K  G  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5789" stop="5902"/>
                    <exon start="10933" stop="11070"/>
                    <exon start="11306" stop="11420"/>
                    <exon start="11832" stop="12069"/>
                    <exon start="12887" stop="13078"/>
                    <exon start="13176" stop="13496"/>
                    <exon start="14287" stop="14509"/>
                    <exon start="18300" stop="18318"/>
                    <exon start="20114" stop="20115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELLHSSPLNGDTLTLLGISGDPTMDGGQRRMSIDNEKLPISPKALGVHDPSLNQVGHSNSPTFAANRDPIQNGSAEAVICNSKKLEDAMQEFGLKIKHHEDNVKYLKAVKNELDDSILDIRVALGTTKSASETGSENKESSNGQNEEETIEQILSFDKSAAAICVQLQKRSGTQITQIPFMKDIIGIVALLGKVDDDNLSRSLSDYLGLETMLGVVFKTRDGVKALETYDREGRINKSSGFHGLGASIGRPLDDRYLVICLEDLRPYTGKFIADDPQRRLDIKKPRYLNEETPPGFLGFAVNMINIDTANLYCVTSTGYGLRETLFYRLFSRLQVYKTRADMLQALPLIADGAISLDGGIIKSSGISSLGEREVKIKFPMSSGRPNVPENYYETEIRLKELQWKRARFVDDLQREQTLLDHAKFNFEIKKQDFVKFLARSSSYASAPYIFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="41876" PGL_stop="42531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41876" e_stop="42531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="41876" e_stop="42531" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41876" stop="42531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATAGAAGTCCAAGGGAGAGGTGAGTCCTTAGTGTTGTTCCAAAGGAAACAGCGGCATTACTGTTCTATGAATTCCCTTTGTGGTCCCTTTATTCATTAGTTTCTTCAAAGGCTGAGTTTTTTTTTTGTGGGGTTCACTTCTCTTGGGAAGTTGAATTCTGTTGGTGATTTTTTTTAGGGTTTATGTTATAATACAGAAACAAAATCAAGAAAAGACATGAAAAGGGTGTCCAATGATGACCAAAGTTTGAGTTTTGTTCATCAGTAGGTTGGAGGGTTGTTCTGTATTTTGTCAAGATTCAATTTTGATGGTTGATGACAACGTTATGGAAGACCTGAATCAGAAGCAGGGGAGTTTTGATGGTCAGCTCGTTTTGGTACCTTTTTTGGAAAATGTTGTAGCTAATGCTAGTGTGATAAGTTCAAAGAAAAGGGGAAGACCAAAGGGTTCTAAGAATAACAGGAGAAGTGTGGAAGAAAATGTGGGAACTTCAGGTACAGCTAGTGTGATGGATGACAGTGGACAAAGGGTTCTTATGAAGAATAGACTAGACAGGCCAAAGGGTTCCAAGAATAGCAGGAGAAGTGGTGAAGAAGATGGGGGAATTTCAGGTACAGTTAGTGTGATGGATGGCAGTAGAGAAGGGTTTCTTA</gDNA_template>
            <first_frame> Q  I  E  V  Q  G  R  G  E  S  L  V  L  F  Q  R  K  Q  R  H  Y  C  S  M  N  S  L  C  G  P  F  I  H  *  F  L  Q  R  L  S  F  F  F  V  G  F  T  S  L  G  K  L  N  S  V  G  D  F  F  *  G  L  C  Y  N  T  E  T  K  S  R  K  D  M  K  R  V  S  N  D  D  Q  S  L  S  F  V  H  Q  *  V  G  G  L  F  C  I  L  S  R  F  N  F  D  G  *  *  Q  R  Y  G  R  P  E  S  E  A  G  E  F  *  W  S  A  R  F  G  T  F  F  G  K  C  C  S  *  C  *  C  D  K  F  K  E  K  G  K  T  K  G  F  *  E  *  Q  E  K  C  G  R  K  C  G  N  F  R  Y  S  *  C  D  G  *  Q  W  T  K  G  S  Y  E  E  *  T  R  Q  A  K  G  F  Q  E  *  Q  E  K  W  *  R  R  W  G  N  F  R  Y  S  *  C  D  G  W  Q  *  R  R  V  S   </first_frame>
            <second_frame>  K  *  K  S  K  G  E  V  S  P  *  C  C  S  K  G  N  S  G  I  T  V  L  *  I  P  F  V  V  P  L  F  I  S  F  F  K  G  *  V  F  F  L  W  G  S  L  L  L  G  S  *  I  L  L  V  I  F  F  R  V  Y  V  I  I  Q  K  Q  N  Q  E  K  T  *  K  G  C  P  M  M  T  K  V  *  V  L  F  I  S  R  L  E  G  C  S  V  F  C  Q  D  S  I  L  M  V  D  D  N  V  M  E  D  L  N  Q  K  Q  G  S  F  D  G  Q  L  V  L  V  P  F  L  E  N  V  V  A  N  A  S  V  I  S  S  K  K  R  G  R  P  K  G  S  K  N  N  R  R  S  V  E  E  N  V  G  T  S  G  T  A  S  V  M  D  D  S  G  Q  R  V  L  M  K  N  R  L  D  R  P  K  G  S  K  N  S  R  R  S  G  E  E  D  G  G  I  S  G  T  V  S  V  M  D  G  S  R  E  G  F  L  </second_frame>
            <third_frame>   N  R  S  P  R  E  R  *  V  L  S  V  V  P  K  E  T  A  A  L  L  F  Y  E  F  P  L  W  S  L  Y  S  L  V  S  S  K  A  E  F  F  F  C  G  V  H  F  S  W  E  V  E  F  C  W  *  F  F  L  G  F  M  L  *  Y  R  N  K  I  K  K  R  H  E  K  G  V  Q  *  *  P  K  F  E  F  C  S  S  V  G  W  R  V  V  L  Y  F  V  K  I  Q  F  *  W  L  M  T  T  L  W  K  T  *  I  R  S  R  G  V  L  M  V  S  S  F  W  Y  L  F  W  K  M  L  *  L  M  L  V  *  *  V  Q  R  K  G  E  D  Q  R  V  L  R  I  T  G  E  V  W  K  K  M  W  E  L  Q  V  Q  L  V  *  W  M  T  V  D  K  G  F  L  *  R  I  D  *  T  G  Q  R  V  P  R  I  A  G  E  V  V  K  K  M  G  E  F  Q  V  Q  L  V  *  W  M  A  V  E  K  G  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42129" stop="42530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLFISRLEGCSVFCQDSILMVDDNVMEDLNQKQGSFDGQLVLVPFLENVVANASVISSKKRGRPKGSKNNRRSVEENVGTSGTASVMDDSGQRVLMKNRLDRPKGSKNSRRSGEEDGGISGTVSVMDGSREGFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="46243" PGL_stop="47681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46243" e_stop="46296"/>
            <exon e_start="46388" e_stop="46451"/>
            <exon e_start="46994" e_stop="47681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46243" e_stop="46296" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46297" i_stop="46387" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46388" e_stop="46451" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.961">
            <gDNA_intron_boundary i_start="46452" i_stop="46993" i_length="542"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="46994" e_stop="47681" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46243" stop="46296"/>
              <exon start="46388" stop="46451"/>
              <exon start="46994" stop="47681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCATATTCAAAAAGAGCAAAGGTTTGAGCTAGAGGTTGAAGCAAACATTCGTG : GTGTTCAGCTGACAGAAGAAGACGTCATCATATCAGCCGTTGATGATGATGATAGAGTGTATTG : TGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGATTGCTCTTACGATATCTGTGTCAATTGTTGTCGGGAACTCAGAGATGGTGCCCAGCATGGAGCTACTGAAGTCAGCTCATCTCTCAGCAAGTCGGTGGAAGCTAGTCGTATCACAGCATTGAAGGGAAACAATGCGCCAGATGGCTGGAGAAGTCCAGAGACCCTCCTTGCTAATGATTGTCCAACTCACATGTCCTTCGATGTTGCTGAGTGGAGAGCCAAATCTGATGGCAGCATACCCTGTCCTCCTAAAGAGTGTGGTGGTTGTGGTTCTTCTTTAATGGCTCTAAGGCGTATCTTCGAAGCAAATTGGGTAGACCAACTAATTCAAAGTGCTGAGGCCTTAACATGCAACTACCGCCTTCCAGATATAGATTTGTCGCATGGGTGTTCATTTTGTCTTGCTACCACTTCTGTCCAAGACGGTGATAACCGATGTCAAGTAAGAGAAGCATCTTTTAGGAACAACAGCCATGATAATCTTCTGTACTGTCCTAATGCTGTTCATGTTGATGGCAACGAGTTTGAGCATTTTCAAATGCATTGGAGGGCTGGTGAACCTGTAATAGTTAGAAATGCACAAGCTAAGGCCTCTGGTCTTAGCTGGGAGCCAATGGTAATGTGGAGGGCCTTC</gDNA_template>
            <first_frame> G  I  F  K  K  S  K  G  L  S  *  R  L  K  Q  T  F  V  :  V  F  S  *  Q  K  K  T  S  S  Y  Q  P  L  M  M  M  I  E  C  I   : V  I  I  A  T  H  P  L  S  I  S  I  E  A  A  Q  I  L  I  A  L  T  I  S  V  S  I  V  V  G  N  S  E  M  V  P  S  M  E  L  L  K  S  A  H  L  S  A  S  R  W  K  L  V  V  S  Q  H  *  R  E  T  M  R  Q  M  A  G  E  V  Q  R  P  S  L  L  M  I  V  Q  L  T  C  P  S  M  L  L  S  G  E  P  N  L  M  A  A  Y  P  V  L  L  K  S  V  V  V  V  V  L  L  *  W  L  *  G  V  S  S  K  Q  I  G  *  T  N  *  F  K  V  L  R  P  *  H  A  T  T  A  F  Q  I  *  I  C  R  M  G  V  H  F  V  L  L  P  L  L  S  K  T  V  I  T  D  V  K  *  E  K  H  L  L  G  T  T  A  M  I  I  F  C  T  V  L  M  L  F  M  L  M  A  T  S  L  S  I  F  K  C  I  G  G  L  V  N  L  *  *  L  E  M  H  K  L  R  P  L  V  L  A  G  S  Q  W  *  C  G  G  P   </first_frame>
            <second_frame>  A  Y  S  K  R  A  K  V  *  A  R  G  *  S  K  H  S  W :   C  S  A  D  R  R  R  R  H  H  I  S  R  *  *  *  *  *  S  V  L  :  *  *  L  Q  H  I  H  C  Q  F  P  *  K  L  P  K  S  *  L  L  L  R  Y  L  C  Q  L  L  S  G  T  Q  R  W  C  P  A  W  S  Y  *  S  Q  L  I  S  Q  Q  V  G  G  S  *  S  Y  H  S  I  E  G  K  Q  C  A  R  W  L  E  K  S  R  D  P  P  C  *  *  L  S  N  S  H  V  L  R  C  C  *  V  E  S  Q  I  *  W  Q  H  T  L  S  S  *  R  V  W  W  L  W  F  F  F  N  G  S  K  A  Y  L  R  S  K  L  G  R  P  T  N  S  K  C  *  G  L  N  M  Q  L  P  P  S  R  Y  R  F  V  A  W  V  F  I  L  S  C  Y  H  F  C  P  R  R  *  *  P  M  S  S  K  R  S  I  F  *  E  Q  Q  P  *  *  S  S  V  L  S  *  C  C  S  C  *  W  Q  R  V  *  A  F  S  N  A  L  E  G  W  *  T  C  N  S  *  K  C  T  S  *  G  L  W  S  *  L  G  A  N  G  N  V  E  G  L  </second_frame>
            <third_frame>   H  I  Q  K  E  Q  R  F  E  L  E  V  E  A  N  I  R   : G  V  Q  L  T  E  E  D  V  I  I  S  A  V  D  D  D  D  R  V  Y  C :   D  N  C  N  T  S  I  V  N  F  H  R  S  C  P  N  P  D  C  S  Y  D  I  C  V  N  C  C  R  E  L  R  D  G  A  Q  H  G  A  T  E  V  S  S  S  L  S  K  S  V  E  A  S  R  I  T  A  L  K  G  N  N  A  P  D  G  W  R  S  P  E  T  L  L  A  N  D  C  P  T  H  M  S  F  D  V  A  E  W  R  A  K  S  D  G  S  I  P  C  P  P  K  E  C  G  G  C  G  S  S  L  M  A  L  R  R  I  F  E  A  N  W  V  D  Q  L  I  Q  S  A  E  A  L  T  C  N  Y  R  L  P  D  I  D  L  S  H  G  C  S  F  C  L  A  T  T  S  V  Q  D  G  D  N  R  C  Q  V  R  E  A  S  F  R  N  N  S  H  D  N  L  L  Y  C  P  N  A  V  H  V  D  G  N  E  F  E  H  F  Q  M  H  W  R  A  G  E  P  V  I  V  R  N  A  Q  A  K  A  S  G  L  S  W  E  P  M  V  M  W  R  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46245" stop="46296"/>
                    <exon start="46388" stop="46451"/>
                    <exon start="46994" stop="47681"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIQKEQRFELEVEANIRGVQLTEEDVIISAVDDDDRVYCDNCNTSIVNFHRSCPNPDCSYDICVNCCRELRDGAQHGATEVSSSLSKSVEASRITALKGNNAPDGWRSPETLLANDCPTHMSFDVAEWRAKSDGSIPCPPKECGGCGSSLMALRRIFEANWVDQLIQSAEALTCNYRLPDIDLSHGCSFCLATTSVQDGDNRCQVREASFRNNSHDNLLYCPNAVHVDGNEFEHFQMHWRAGEPVIVRNAQAKASGLSWEPMVMWRAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46455" e_stop="47064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="46455" e_stop="47064" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46455" stop="47064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTCTCCAATATAATGATTTTTTGTTGCGCTATCTATGCACATACACCATGTATAATGTTTTATGAGTTATTATTCATCCATAGTGACATTAGACGTAAGTTGTTTCTTCATGGAGTAAACAGTGGGATTGATTGTTCAAATATCTTTCTGTTGAAGTCAATTTTGTTTCTTATCTGCTCTTTAACTCAGCAGCTATTGCTTACACGATCTGTTTCATGAAGCTGCATTGTTCATTCCTCCTGATAATGTATTGCCTTCTACTTTGACACCCAAGGATTTCTTTGACCTTTTGATTTGTGAACACTAATTTTCTATGGTTATTACATAAAGAAAGGTGTGTCTGTGGACGCGGTAGCTCAAAGTTTCCAGAAGTTCTTTTATTAGTTTGAAATGTAGTTTCTGTTGAACATATTCTTTGTCTTTATTTGTTTATTCTGGAAGAAAGGATGTAAGCTTACACAGAATGTTTACTATTTCCAGAGCTCAGTTTTGTCATGACACAATAGCTGTAATGATGCATGGTTCCTTATTTGGCAGTGATAATTGCAACACATCCATTGTCAATTTCCATAGAAGCTGCCCAAATCCTGATTGCTCTTACGATATCT</gDNA_template>
            <first_frame> W  S  P  I  *  *  F  F  V  A  L  S  M  H  I  H  H  V  *  C  F  M  S  Y  Y  S  S  I  V  T  L  D  V  S  C  F  F  M  E  *  T  V  G  L  I  V  Q  I  S  F  C  *  S  Q  F  C  F  L  S  A  L  *  L  S  S  Y  C  L  H  D  L  F  H  E  A  A  L  F  I  P  P  D  N  V  L  P  S  T  L  T  P  K  D  F  F  D  L  L  I  C  E  H  *  F  S  M  V  I  T  *  R  K  V  C  L  W  T  R  *  L  K  V  S  R  S  S  F  I  S  L  K  C  S  F  C  *  T  Y  S  L  S  L  F  V  Y  S  G  R  K  D  V  S  L  H  R  M  F  T  I  S  R  A  Q  F  C  H  D  T  I  A  V  M  M  H  G  S  L  F  G  S  D  N  C  N  T  S  I  V  N  F  H  R  S  C  P  N  P  D  C  S  Y  D  I  </first_frame>
            <second_frame>  G  L  Q  Y  N  D  F  L  L  R  Y  L  C  T  Y  T  M  Y  N  V  L  *  V  I  I  H  P  *  *  H  *  T  *  V  V  S  S  W  S  K  Q  W  D  *  L  F  K  Y  L  S  V  E  V  N  F  V  S  Y  L  L  F  N  S  A  A  I  A  Y  T  I  C  F  M  K  L  H  C  S  F  L  L  I  M  Y  C  L  L  L  *  H  P  R  I  S  L  T  F  *  F  V  N  T  N  F  L  W  L  L  H  K  E  R  C  V  C  G  R  G  S  S  K  F  P  E  V  L  L  L  V  *  N  V  V  S  V  E  H  I  L  C  L  Y  L  F  I  L  E  E  R  M  *  A  Y  T  E  C  L  L  F  P  E  L  S  F  V  M  T  Q  *  L  *  *  C  M  V  P  Y  L  A  V  I  I  A  T  H  P  L  S  I  S  I  E  A  A  Q  I  L  I  A  L  T  I  S </second_frame>
            <third_frame>   V  S  N  I  M  I  F  C  C  A  I  Y  A  H  T  P  C  I  M  F  Y  E  L  L  F  I  H  S  D  I  R  R  K  L  F  L  H  G  V  N  S  G  I  D  C  S  N  I  F  L  L  K  S  I  L  F  L  I  C  S  L  T  Q  Q  L  L  L  T  R  S  V  S  *  S  C  I  V  H  S  S  *  *  C  I  A  F  Y  F  D  T  Q  G  F  L  *  P  F  D  L  *  T  L  I  F  Y  G  Y  Y  I  K  K  G  V  S  V  D  A  V  A  Q  S  F  Q  K  F  F  Y  *  F  E  M  *  F  L  L  N  I  F  F  V  F  I  C  L  F  W  K  K  G  C  K  L  T  Q  N  V  Y  Y  F  Q  S  S  V  L  S  *  H  N  S  C  N  D  A  W  F  L  I  W  Q  *  *  L  Q  H  I  H  C  Q  F  P  *  K  L  P  K  S  *  L  L  L  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46457" stop="46675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSNIMIFCCAIYAHTPCIMFYELLFIHSDIRRKLFLHGVNSGIDCSNIFLLKSILFLICSLTQQLLLTRSVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46863" stop="47063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYSLSLFVYSGRKDVSLHRMFTISRAQFCHDTIAVMMHGSLFGSDNCNTSIVNFHRSCPNPDCSYDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="50176" PGL_stop="54202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50176" e_stop="50229"/>
            <exon e_start="50326" e_stop="50411"/>
            <exon e_start="51098" e_stop="51217"/>
            <exon e_start="52260" e_stop="52330"/>
            <exon e_start="53931" e_stop="54202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.664" acc_prob="0.904" e_score="0.981"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="0.988"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="0.986"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="50176" e_stop="50229" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.664" acc_prob="0.904">
            <gDNA_intron_boundary i_start="50230" i_stop="50325" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="50326" e_stop="50411" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="50412" i_stop="51097" i_length="686"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="51098" e_stop="51217" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51218" i_stop="52259" i_length="1042"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="52260" e_stop="52330" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="52331" i_stop="53930" i_length="1600"/>
          </intron>
          <exon e_serial="5" e_score="0.912">
            <gDNA_exon_boundary e_start="53931" e_stop="54202" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50176" stop="50229"/>
              <exon start="50326" stop="50411"/>
              <exon start="51098" stop="51217"/>
              <exon start="52260" stop="52330"/>
              <exon start="53931" stop="54202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50181" stop="50229"/>
              <exon start="50326" stop="50411"/>
              <exon start="51098" stop="51217"/>
              <exon start="52260" stop="52330"/>
              <exon start="53931" stop="54202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574829" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAGACATTTTATTTGGAGGAGAAGCATAAAAAACAGCTGAAGGAGGAGTTCA : ACGTTGAGCCATGGACGTTTGAGCAATACCTTGGTGAAGCTGTTTTTATTCCTGCAGGATGTCCTCATCAAGTGAGAAATAGACAG : TCATGTATCAAGGTTGCTGTTGACTTTGTATCCCCGGAAAATGTTCAAGAGTGTATTCGCTTGACGGAGGAGTTTCGCTTGCTACCCAAAGGCCACCGATCTAAGGAAGATATATTGGAG : GTGAAGAAGTTGGGGCTTTATGCTGCTAGTGTTGCTGTTGATGAAGCCATAAACCTGTTGTCAAAACTTAA : TGCTCCTCAGTCTTGTGATGAATTGCAACAGCAAGAACATGCTACCGGAACTGAGAGCTCTATTGCAGAAAGCCTGGATAATGGGATCCATCAGCTGTAGTGACCAAGACTGAAGGCTGCTCTTGTTAAATAATGAAGATTTTGAAGTTTTTAGAGAACATTTATTTGATTCTAAATCTTTTGATTGGATTGTGAGGAGGCATTTCTGTTTTTGTATACTTTTTTTTTTCGTCTCTCCAAAATAATAATCCTTTTGAGGCATTCTTTTAGAT</gDNA_template>
            <first_frame> I  R  H  F  I  W  R  R  S  I  K  N  S  *  R  R  S  S  :  T  L  S  H  G  R  L  S  N  T  L  V  K  L  F  L  F  L  Q  D  V  L  I  K  *  E  I  D  S :   H  V  S  R  L  L  L  T  L  Y  P  R  K  M  F  K  S  V  F  A  *  R  R  S  F  A  C  Y  P  K  A  T  D  L  R  K  I  Y  W  R :   *  R  S  W  G  F  M  L  L  V  L  L  L  M  K  P  *  T  C  C  Q  N  L   : M  L  L  S  L  V  M  N  C  N  S  K  N  M  L  P  E  L  R  A  L  L  Q  K  A  W  I  M  G  S  I  S  C  S  D  Q  D  *  R  L  L  L  L  N  N  E  D  F  E  V  F  R  E  H  L  F  D  S  K  S  F  D  W  I  V  R  R  H  F  C  F  C  I  L  F  F  F  V  S  P  K  *  *  S  F  *  G  I  L  L  D </first_frame>
            <second_frame>  S  D  I  L  F  G  G  E  A  *  K  T  A  E  G  G  V  Q :   R  *  A  M  D  V  *  A  I  P  W  *  S  C  F  Y  S  C  R  M  S  S  S  S  E  K  *  T   : V  M  Y  Q  G  C  C  *  L  C  I  P  G  K  C  S  R  V  Y  S  L  D  G  G  V  S  L  A  T  Q  R  P  P  I  *  G  R  Y  I  G   : G  E  E  V  G  A  L  C  C  *  C  C  C  *  *  S  H  K  P  V  V  K  T  *  :  C  S  S  V  L  *  *  I  A  T  A  R  T  C  Y  R  N  *  E  L  Y  C  R  K  P  G  *  W  D  P  S  A  V  V  T  K  T  E  G  C  S  C  *  I  M  K  I  L  K  F  L  E  N  I  Y  L  I  L  N  L  L  I  G  L  *  G  G  I  S  V  F  V  Y  F  F  F  S  S  L  Q  N  N  N  P  F  E  A  F  F  *   </second_frame>
            <third_frame>   Q  T  F  Y  L  E  E  K  H  K  K  Q  L  K  E  E  F   : N  V  E  P  W  T  F  E  Q  Y  L  G  E  A  V  F  I  P  A  G  C  P  H  Q  V  R  N  R  Q  :  S  C  I  K  V  A  V  D  F  V  S  P  E  N  V  Q  E  C  I  R  L  T  E  E  F  R  L  L  P  K  G  H  R  S  K  E  D  I  L  E  :  V  K  K  L  G  L  Y  A  A  S  V  A  V  D  E  A  I  N  L  L  S  K  L  N :   A  P  Q  S  C  D  E  L  Q  Q  Q  E  H  A  T  G  T  E  S  S  I  A  E  S  L  D  N  G  I  H  Q  L  *  *  P  R  L  K  A  A  L  V  K  *  *  R  F  *  S  F  *  R  T  F  I  *  F  *  I  F  *  L  D  C  E  E  A  F  L  F  L  Y  T  F  F  F  R  L  S  K  I  I  I  L  L  R  H  S  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50178" stop="50229"/>
                    <exon start="50326" stop="50411"/>
                    <exon start="51098" stop="51217"/>
                    <exon start="52260" stop="52330"/>
                    <exon start="53931" stop="54030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTFYLEEKHKKQLKEEFNVEPWTFEQYLGEAVFIPAGCPHQVRNRQSCIKVAVDFVSPENVQECIRLTEEFRLLPKGHRSKEDILEVKKLGLYAASVAVDEAINLLSKLNAPQSCDELQQQEHATGTESSIAESLDNGIHQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="54878" PGL_stop="63375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54878" e_stop="55723"/>
            <exon e_start="55931" e_stop="55992"/>
            <exon e_start="56167" e_stop="56267"/>
            <exon e_start="56806" e_stop="56885"/>
            <exon e_start="58269" e_stop="58319"/>
            <exon e_start="58506" e_stop="58580"/>
            <exon e_start="58685" e_stop="58762"/>
            <exon e_start="59610" e_stop="59666"/>
            <exon e_start="60156" e_stop="60226"/>
            <exon e_start="60313" e_stop="60412"/>
            <exon e_start="61062" e_stop="61166"/>
            <exon e_start="61386" e_stop="61448"/>
            <exon e_start="61615" e_stop="61737"/>
            <exon e_start="62798" e_stop="62953"/>
            <exon e_start="63046" e_stop="63258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="0.999"/>
          <exon-intron don_prob="0.176" acc_prob="0.979" e_score="0.984"/>
          <exon-intron don_prob="0.949" acc_prob="0.884" e_score="0.960"/>
          <exon-intron don_prob="0.972" acc_prob="0.967" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.991" e_score="0.990"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.254" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="54878" e_stop="55723" e_length="846"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="55724" i_stop="55930" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="55931" e_stop="55992" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.176" acc_prob="0.979">
            <gDNA_intron_boundary i_start="55993" i_stop="56166" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="56167" e_stop="56267" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.884">
            <gDNA_intron_boundary i_start="56268" i_stop="56805" i_length="538"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="56806" e_stop="56885" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.967">
            <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58269" e_stop="58319" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58506" e_stop="58580" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.945">
            <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58685" e_stop="58762" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59610" e_stop="59666" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="60156" e_stop="60226" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="0.990">
            <gDNA_exon_boundary e_start="60313" e_stop="60412" e_length="100"/>
          </exon>
          <intron i_serial="10" don_prob="0.932" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61062" e_stop="61166" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61386" e_stop="61448" e_length="63"/>
          </exon>
          <intron i_serial="12" don_prob="0.254" acc_prob="0.988">
            <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="61615" e_stop="61737" e_length="123"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="62798" e_stop="62953" e_length="156"/>
          </exon>
          <intron i_serial="14" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92"/>
          </intron>
          <exon e_serial="15" e_score="0.991">
            <gDNA_exon_boundary e_start="63046" e_stop="63258" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54878" stop="55375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54880" stop="55485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54886" stop="55465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54887" stop="55377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54905" stop="55358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54924" stop="55396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54925" stop="55603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54925" stop="55497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54925" stop="55311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54951" stop="55653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54965" stop="55520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54965" stop="55384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55089" stop="55698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55323" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56267"/>
              <exon start="56806" stop="56885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55606" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56267"/>
              <exon start="56806" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55606" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56267"/>
              <exon start="56806" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55614" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55615" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56267"/>
              <exon start="56806" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56850" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58282" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60159" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60346" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61103" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAG : GTTCTATCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTG : GCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAG : GGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAG : GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT : GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG : GCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACA : ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG : ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG : GCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA : GTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG : GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG : GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG : ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG : GCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTTGCTATTTATTCTTTGAT</gDNA_template>
            <first_frame> Y  H  S  F  G  Y  *  N  L  I  L  L  C  C  S  R  K  S  S  L  L  L  H  Y  Q  N  P  L  Y  K  Q  E  F  S  Q  F  F  S  F  L  C  L  M  G  H  L  L  N  P  T  K  V  S  S  L  P  T  N  I  K  S  *  N  C  Y  S  Y  P  H  P  F  S  L  H  N  H  L  Y  L  V  H  T  Y  K  K  K  E  S  L  L  R  F  L  V  F  L  C  W  G  V  E  F  P  L  N  *  A  D  M  A  A  V  L  R  S  K  S  S  R  R  T  A  S  M  A  I  T  H  F  R  Y  F  I  I  N  D  F  H  T  G  H  L  P  N  F  H  L  C  S  R  T  K  W  D  N  L  V  S  N  S  G  H  S  S  S  L  F  K  P  V  S  F  R  G  E  F  V  D  R  C  Y  D  N  L  K  N  S  S  R  K  S  K  E  K  I  N  M  S  S  N  Y  G  E  P  P  E  I  W  Q  P  P  G  E  G  I  V  V  R  P  G  V  K  F  V  Q  V  G  E  G  E  V  P  G  S  G  S  G  S  G  G  G  F  G  S  G  S  K  D  G  S  W  G  G  S  N  L  G  T  Q  F  P  T  P  K  Q  L  C  R  G  L  D  K  F  V  I  G  Q  E  R  A  K  K  :  V  L  S  V  A  V  Y  N  H  Y  K  R  I  Y  N  D  S  S  H  K  W :   P  A  G  N  D  S  S  E  K  T  D  G  V  E  N  E  S  V  E  L  E  K  S  N  I  L  L  M  G  P  T  G  S   : G  K  T  L  L  A  K  T  L  A  R  L  V  N  V  P  F  V  I  A  D  A  T  T  L  T  Q  :  A  G  Y  V  G  E  D  V  E  S  I  L  Y  K  L  L  T  :  V  A  D  Y  N  V  A  A  A  Q  Q  G  I  V  Y  I  D  E  V  D  K  I  T  K  K  :  A  E  S  L  N  I  S  R  D  V  S  G  E  G  V  Q  Q  A  L  L  K  M  L  E  G  T  :  I  V  N  V  P  E  K  G  A  R  K  H  P  R  G  D  N  I  Q  :  I  D  T  K  D  I  L  F  I  C  G  G  A  F  I  D  L  E  K  T  I  S  E  R :   R  Q  D  S  S  I  G  F  G  A  P  V  R  T  N  M  R  T  G  G  V  T  S  A  A  V  T  S  S  L  L  E  T  :  V  E  S  S  D  L  I  S  Y  G  L  I  P  E  F  V  G  R  F  P  I  L  V  S  L  S  A  L  T  E  D  Q  L  V  Q  :  V  L  T  E  P  K  N  A  L  G  K  Q  Y  K  K  M  F  Q  M  N  G  :  V  K  L  H  F  V  E  A  A  L  R  L  V  A  R  K  A  I  S  K  N  T  G  A  R  G  L  R  S  I  L  E  N  I  L  M  D  A  M  Y  E  :  I  P  D  V  R  T  G  D  D  V  I  D  A  V  V  V  D  E  E  S  V  G  T  E  G  R  G  C  G  G  K  I  L  Y  G  K  G  A  F  D  R  H  F  P  Q  N  R  S  K  D  S  E  :  A  N  M  E  A  S  D  G  D  H  E  A  E  Q  E  L  P  S  I  V  A  L  *  M  F  C  E  V  Y  F  W  S  H  L  C  T  V  I  *  N  S  N  K  Q  C  Y  L  N  R  A  Q  C  T  F  I  L  H  F  V  V  F  L  L  L  S  C  Y  L  F  F  D </first_frame>
            <second_frame>  I  T  L  L  D  I  K  I  *  F  F  C  V  A  L  E  N  P  H  Y  S  S  T  T  K  I  L  S  I  N  K  N  F  L  N  F  S  V  F  F  V  *  W  V  I  S  *  T  P  Q  K  S  P  L  F  R  Q  T  S  N  L  E  I  V  T  H  T  H  I  P  F  H  Y  I  I  I  S  I  L  F  I  H  I  K  R  K  N  L  Y  F  V  F  L  F  F  F  V  G  A  L  S  F  H  *  T  K  P  I  W  Q  L  Y  L  D  R  N  R  L  D  V  R  L  L  W  L  L  P  T  S  D  T  L  S  S  M  I  F  T  R  V  I  Y  P  I  S  I  C  V  V  E  P  N  G  I  I  W  S  Q  I  L  V  I  V  L  L  Y  S  N  L  Y  R  F  V  V  N  L  L  T  D  V  M  I  I  *  R  I  Q  V  G  R  V  R  R  K  L  I  C  L  V  T  M  G  N  L  L  R  F  G  N  H  L  V  R  G  L  W  F  V  L  V  *  N  L  F  R  W  V  K  G  K  F  L  V  R  V  R  V  L  E  V  G  L  V  P  G  Q  K  M  G  L  G  V  D  P  I  W  V  P  N  F  P  H  Q  S  N  C  V  E  D  L  I  S  L  *  L  D  R  R  E  L  K  R :   F  Y  L  S  P  Y  I  I  I  T  R  E  Y  I  M  T  L  H  I  S   : G  L  Q  E  M  T  V  V  K  K  Q  M  E  *  K  M  N  L  W  S  L  R  R  V  T  S  F  *  W  D  Q  Q  V  Q  :  G  K  L  Y  L  P  R  P  *  L  D  W  *  M  F  P  L  *  *  Q  M  L  R  H  *  L  R :   Q  D  M  L  G  K  M  W  N  L  F  Y  I  S  S  S  L :   L  L  T  T  M  *  Q  L  L  S  K  A  *  C  I  L  M  K  L  T  K  S  R  K  R :   L  K  A  S  T  S  V  E  M  S  Q  E  R  A  S  S  R  H  C  *  R  C  L  K  E  Q :   L  S  M  C  R  R  R  E  L  G  S  T  L  E  G  I  I  F  R :   L  I  P  K  I  F  S  L  Y  V  V  E  P  S  L  T  W  R  K  Q  S  Q  K   : G  A  K  I  L  L  *  D  L  V  H  Q  F  A  Q  T  *  G  L  V  V  L  Q  V  L  L  *  R  H  L  Y  W  R  Q :   L  K  V  V  I  L  Y  H  T  V  *  Y  L  S  L  S  A  D  S  P  F  L  L  V  C  Q  L  *  L  R  I  N  L  C  R :   F  *  R  S  Q  K  M  R  *  G  S  S  T  K  R  C  S  R  *  T  G :   *  S  C  I  L  L  K  L  H  *  D  W  *  L  G  K  Q  Y  L  K  I  L  V  L  V  D  C  D  P  Y  W  R  I  Y  *  W  M  L  C  M  R :   F  L  M  S  E  Q  A  M  M  *  *  M  P  L  *  L  M  R  S  L  *  E  L  R  G  E  D  A  G  V  K  S  F  M  A  K  V  H  L  T  D  T  S  H  R  I  D  Q  R  I  L  R :   Q  T  W  R  R  P  M  E  T  M  R  Q  N  R  N  F  L  P  L  L  L  C  K  C  S  V  R  C  I  S  G  L  T  C  V  Q  *  S  K  I  Q  I  N  N  V  I  *  I  E  L  N  V  L  S  Y  C  I  L  L  C  F  Y  C  Y  L  A  I  Y  S  L   </second_frame>
            <third_frame>   S  L  F  W  I  L  K  F  N  S  S  V  L  L  *  K  I  L  I  T  P  P  L  P  K  S  S  L  *  T  R  I  F  S  I  F  Q  F  S  L  S  D  G  S  S  L  K  P  H  K  S  L  L  S  S  D  K  H  Q  I  L  K  L  L  L  I  P  T  S  L  F  I  T  *  S  S  L  S  C  S  Y  I  *  K  E  R  I  F  T  S  F  S  C  F  S  L  L  G  R  *  V  S  T  E  L  S  R  Y  G  S  C  T  *  I  E  I  V  *  T  Y  G  F  Y  G  Y  Y  P  L  Q  I  L  Y  H  Q  *  F  S  H  G  S  F  T  Q  F  P  F  V  *  S  N  Q  M  G  *  F  G  L  K  F  W  S  *  F  F  F  I  Q  T  C  I  V  S  W  *  I  C  *  P  M  L  *  *  F  E  E  F  K  *  E  E  *  G  E  N  *  Y  V  *  *  L  W  G  T  S  *  D  L  A  T  T  W  *  G  D  C  G  S  S  W  C  E  I  C  S  G  G  *  R  G  S  S  W  F  G  F  G  F  W  R  W  V  W  F  R  V  K  R  W  V  L  G  W  I  Q  F  G  Y  P  I  S  H  T  K  A  T  V  *  R  T  *  *  V  C  N  W  T  G  E  S  *  K   : G  S  I  C  R  R  I  *  S  L  Q  E  N  I  *  *  L  F  T  *  V  :  A  C  R  K  *  Q  *  *  K  N  R  W  S  R  K  *  I  C  G  A  *  E  E  *  H  P  F  N  G  T  N  R  F  R :   E  N  F  T  C  Q  D  L  S  S  I  G  E  C  S  L  C  N  S  R  C  Y  D  T  N  S   : G  R  I  C  W  G  R  C  G  I  Y  S  I  *  A  P  H   : C  C  *  L  Q  C  S  S  C  S  A  R  H  S  V  Y  *  *  S  *  Q  N  H  E  K   : G  *  K  P  Q  H  Q  *  R  C  L  R  R  G  R  P  A  G  I  A  E  D  A  *  R  N   : N  C  Q  C  A  G  E  G  S  S  E  A  P  *  R  G  *  Y  S   : D  *  Y  Q  R  Y  S  L  Y  M  W  W  S  L  H  *  L  G  E  N  N  L  R  K  :  A  P  R  F  F  Y  R  I  W  C  T  S  S  H  K  H  E  D  W  W  C  Y  K  C  C  C  D  V  I  F  I  G  D   : S  *  K  *  *  S  Y  I  I  R  S  D  T  *  V  C  R  P  I  P  H  S  C  *  S  V  S  F  N  *  G  S  T  C  A   : G  S  N  G  A  K  K  C  A  R  E  A  V  Q  K  D  V  P  D  E  R   : G  K  V  A  F  C  *  S  C  T  K  I  G  S  *  E  S  N  I  *  K  Y  W  C  S  W  I  A  I  H  I  G  E  Y  I  D  G  C  Y  V  *   : D  S  *  C  Q  N  R  R  *  C  N  R  C  R  C  S  *  *  G  V  C  R  N  *  G  A  R  M  R  G  *  N  P  L  W  Q  R  C  I  *  P  T  L  P  T  E  *  I  K  G  F  *   : G  K  H  G  G  V  R  W  R  P  *  G  R  T  G  T  S  F  H  C  C  F  V  N  V  L  *  G  V  F  L  V  S  L  V  Y  S  N  L  K  F  K  *  T  M  L  F  K  *  S  S  M  Y  F  H  T  A  F  C  C  V  F  T  V  I  L  L  F  I  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55196" stop="55723"/>
                    <exon start="55931" stop="55992"/>
                    <exon start="56167" stop="56267"/>
                    <exon start="56806" stop="56885"/>
                    <exon start="58269" stop="58319"/>
                    <exon start="58506" stop="58580"/>
                    <exon start="58685" stop="58762"/>
                    <exon start="59610" stop="59666"/>
                    <exon start="60156" stop="60226"/>
                    <exon start="60313" stop="60412"/>
                    <exon start="61062" stop="61166"/>
                    <exon start="61386" stop="61448"/>
                    <exon start="61615" stop="61737"/>
                    <exon start="62798" stop="62953"/>
                    <exon start="63046" stop="63114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1716</number_coding_nucleotides>
                  <number_encoded_amino_acids>572</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADMAAVLRSKSSRRTASMAITHFRYFIINDFHTGHLPNFHLCSRTKWDNLVSNSGHSSSLFKPVSFRGEFVDRCYDNLKNSSRKSKEKINMSSNYGEPPEIWQPPGEGIVVRPGVKFVQVGEGEVPGSGSGSGGGFGSGSKDGSWGGSNLGTQFPTPKQLCRGLDKFVIGQERAKKVLSVAVYNHYKRIYNDSSHKWPAGNDSSEKTDGVENESVELEKSNILLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRTNMRTGGVTSAAVTSSLLETVESSDLISYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKMFQMNGVKLHFVEAALRLVARKAISKNTGARGLRSILENILMDAMYEIPDVRTGDDVIDAVVVDEESVGTEGRGCGGKILYGKGAFDRHFPQNRSKDSEANMEASDGDHEAEQELPSIVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54878" e_stop="55723"/>
            <exon e_start="55931" e_stop="55992"/>
            <exon e_start="56167" e_stop="56267"/>
            <exon e_start="56806" e_stop="56885"/>
            <exon e_start="58269" e_stop="58319"/>
            <exon e_start="58506" e_stop="58580"/>
            <exon e_start="58685" e_stop="58762"/>
            <exon e_start="59610" e_stop="59666"/>
            <exon e_start="60156" e_stop="60226"/>
            <exon e_start="60313" e_stop="60412"/>
            <exon e_start="61062" e_stop="61166"/>
            <exon e_start="61386" e_stop="61448"/>
            <exon e_start="61615" e_stop="61737"/>
            <exon e_start="62798" e_stop="62953"/>
            <exon e_start="63046" e_stop="63205"/>
            <exon e_start="63356" e_stop="63375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="0.999"/>
          <exon-intron don_prob="0.176" acc_prob="0.979" e_score="0.984"/>
          <exon-intron don_prob="0.949" acc_prob="0.884" e_score="0.960"/>
          <exon-intron don_prob="0.972" acc_prob="0.967" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.254" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.950"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="54878" e_stop="55723" e_length="846"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="55724" i_stop="55930" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="55931" e_stop="55992" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.176" acc_prob="0.979">
            <gDNA_intron_boundary i_start="55993" i_stop="56166" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="56167" e_stop="56267" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.884">
            <gDNA_intron_boundary i_start="56268" i_stop="56805" i_length="538"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="56806" e_stop="56885" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.967">
            <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58269" e_stop="58319" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58506" e_stop="58580" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.945">
            <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58685" e_stop="58762" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59610" e_stop="59666" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="60156" e_stop="60226" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="60313" e_stop="60412" e_length="100"/>
          </exon>
          <intron i_serial="10" don_prob="0.932" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649"/>
          </intron>
          <exon e_serial="11" e_score="0.981">
            <gDNA_exon_boundary e_start="61062" e_stop="61166" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61386" e_stop="61448" e_length="63"/>
          </exon>
          <intron i_serial="12" don_prob="0.254" acc_prob="0.988">
            <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="61615" e_stop="61737" e_length="123"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="62798" e_stop="62953" e_length="156"/>
          </exon>
          <intron i_serial="14" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92"/>
          </intron>
          <exon e_serial="15" e_score="0.950">
            <gDNA_exon_boundary e_start="63046" e_stop="63205" e_length="160"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="63206" i_stop="63355" i_length="150"/>
          </intron>
          <exon e_serial="16" e_score="0.750">
            <gDNA_exon_boundary e_start="63356" e_stop="63375" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54878" stop="55375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54880" stop="55485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54886" stop="55465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54887" stop="55377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54905" stop="55358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54924" stop="55396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54925" stop="55603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54925" stop="55497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54925" stop="55311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54951" stop="55653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54965" stop="55520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54965" stop="55384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55089" stop="55698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55323" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56267"/>
              <exon start="56806" stop="56885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55606" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56267"/>
              <exon start="56806" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55606" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56267"/>
              <exon start="56806" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55614" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55615" stop="55723"/>
              <exon start="55931" stop="55992"/>
              <exon start="56167" stop="56267"/>
              <exon start="56806" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56850" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58282" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63205"/>
              <exon start="63356" stop="63375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419556" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60159" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCACTCTTTTGGATATTAAAATTTAATTCTTCTGTGTTGCTCTAGAAAATCCTCATTACTCCTCCACTACCAAAATCCTCTCTATAAACAAGAATTTTCTCAATTTTTCAGTTTTCTTTGTCTGATGGGTCATCTCTTAAACCCCACAAAAGTCTCCTCTCTTCCGACAAACATCAAATCTTGAAATTGTTACTCATACCCACATCCCTTTTCATTACATAATCATCTCTATCTTGTTCATACATATAAAAAGAAAGAATCTTTACTTCGTTTTCTTGTTTTTCTTTGTTGGGGCGTTGAGTTTCCACTGAACTAAGCCGATATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCACTTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGTAGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAACCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGTAGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGGCAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAAGGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGATGGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGAGGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAG : GTTCTATCTGTCGCCGTATATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTG : GCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAG : GGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAG : GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT : GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG : GCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACA : ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG : ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG : GCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA : GTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG : GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG : GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG : ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG : GCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTT : TCATCCTTTAGAAACACAAT</gDNA_template>
            <first_frame> Y  H  S  F  G  Y  *  N  L  I  L  L  C  C  S  R  K  S  S  L  L  L  H  Y  Q  N  P  L  Y  K  Q  E  F  S  Q  F  F  S  F  L  C  L  M  G  H  L  L  N  P  T  K  V  S  S  L  P  T  N  I  K  S  *  N  C  Y  S  Y  P  H  P  F  S  L  H  N  H  L  Y  L  V  H  T  Y  K  K  K  E  S  L  L  R  F  L  V  F  L  C  W  G  V  E  F  P  L  N  *  A  D  M  A  A  V  L  R  S  K  S  S  R  R  T  A  S  M  A  I  T  H  F  R  Y  F  I  I  N  D  F  H  T  G  H  L  P  N  F  H  L  C  S  R  T  K  W  D  N  L  V  S  N  S  G  H  S  S  S  L  F  K  P  V  S  F  R  G  E  F  V  D  R  C  Y  D  N  L  K  N  S  S  R  K  S  K  E  K  I  N  M  S  S  N  Y  G  E  P  P  E  I  W  Q  P  P  G  E  G  I  V  V  R  P  G  V  K  F  V  Q  V  G  E  G  E  V  P  G  S  G  S  G  S  G  G  G  F  G  S  G  S  K  D  G  S  W  G  G  S  N  L  G  T  Q  F  P  T  P  K  Q  L  C  R  G  L  D  K  F  V  I  G  Q  E  R  A  K  K  :  V  L  S  V  A  V  Y  N  H  Y  K  R  I  Y  N  D  S  S  H  K  W :   P  A  G  N  D  S  S  E  K  T  D  G  V  E  N  E  S  V  E  L  E  K  S  N  I  L  L  M  G  P  T  G  S   : G  K  T  L  L  A  K  T  L  A  R  L  V  N  V  P  F  V  I  A  D  A  T  T  L  T  Q  :  A  G  Y  V  G  E  D  V  E  S  I  L  Y  K  L  L  T  :  V  A  D  Y  N  V  A  A  A  Q  Q  G  I  V  Y  I  D  E  V  D  K  I  T  K  K  :  A  E  S  L  N  I  S  R  D  V  S  G  E  G  V  Q  Q  A  L  L  K  M  L  E  G  T  :  I  V  N  V  P  E  K  G  A  R  K  H  P  R  G  D  N  I  Q  :  I  D  T  K  D  I  L  F  I  C  G  G  A  F  I  D  L  E  K  T  I  S  E  R :   R  Q  D  S  S  I  G  F  G  A  P  V  R  T  N  M  R  T  G  G  V  T  S  A  A  V  T  S  S  L  L  E  T  :  V  E  S  S  D  L  I  S  Y  G  L  I  P  E  F  V  G  R  F  P  I  L  V  S  L  S  A  L  T  E  D  Q  L  V  Q  :  V  L  T  E  P  K  N  A  L  G  K  Q  Y  K  K  M  F  Q  M  N  G  :  V  K  L  H  F  V  E  A  A  L  R  L  V  A  R  K  A  I  S  K  N  T  G  A  R  G  L  R  S  I  L  E  N  I  L  M  D  A  M  Y  E  :  I  P  D  V  R  T  G  D  D  V  I  D  A  V  V  V  D  E  E  S  V  G  T  E  G  R  G  C  G  G  K  I  L  Y  G  K  G  A  F  D  R  H  F  P  Q  N  R  S  K  D  S  E  :  A  N  M  E  A  S  D  G  D  H  E  A  E  Q  E  L  P  S  I  V  A  L  *  M  F  C  E  V  Y  F  W  S  H  L  C  T  V  I  *  N  S  N  K  Q  C  Y  L  N  R  A  Q  C  T   : F  I  L  *  K  H  N </first_frame>
            <second_frame>  I  T  L  L  D  I  K  I  *  F  F  C  V  A  L  E  N  P  H  Y  S  S  T  T  K  I  L  S  I  N  K  N  F  L  N  F  S  V  F  F  V  *  W  V  I  S  *  T  P  Q  K  S  P  L  F  R  Q  T  S  N  L  E  I  V  T  H  T  H  I  P  F  H  Y  I  I  I  S  I  L  F  I  H  I  K  R  K  N  L  Y  F  V  F  L  F  F  F  V  G  A  L  S  F  H  *  T  K  P  I  W  Q  L  Y  L  D  R  N  R  L  D  V  R  L  L  W  L  L  P  T  S  D  T  L  S  S  M  I  F  T  R  V  I  Y  P  I  S  I  C  V  V  E  P  N  G  I  I  W  S  Q  I  L  V  I  V  L  L  Y  S  N  L  Y  R  F  V  V  N  L  L  T  D  V  M  I  I  *  R  I  Q  V  G  R  V  R  R  K  L  I  C  L  V  T  M  G  N  L  L  R  F  G  N  H  L  V  R  G  L  W  F  V  L  V  *  N  L  F  R  W  V  K  G  K  F  L  V  R  V  R  V  L  E  V  G  L  V  P  G  Q  K  M  G  L  G  V  D  P  I  W  V  P  N  F  P  H  Q  S  N  C  V  E  D  L  I  S  L  *  L  D  R  R  E  L  K  R :   F  Y  L  S  P  Y  I  I  I  T  R  E  Y  I  M  T  L  H  I  S   : G  L  Q  E  M  T  V  V  K  K  Q  M  E  *  K  M  N  L  W  S  L  R  R  V  T  S  F  *  W  D  Q  Q  V  Q  :  G  K  L  Y  L  P  R  P  *  L  D  W  *  M  F  P  L  *  *  Q  M  L  R  H  *  L  R :   Q  D  M  L  G  K  M  W  N  L  F  Y  I  S  S  S  L :   L  L  T  T  M  *  Q  L  L  S  K  A  *  C  I  L  M  K  L  T  K  S  R  K  R :   L  K  A  S  T  S  V  E  M  S  Q  E  R  A  S  S  R  H  C  *  R  C  L  K  E  Q :   L  S  M  C  R  R  R  E  L  G  S  T  L  E  G  I  I  F  R :   L  I  P  K  I  F  S  L  Y  V  V  E  P  S  L  T  W  R  K  Q  S  Q  K   : G  A  K  I  L  L  *  D  L  V  H  Q  F  A  Q  T  *  G  L  V  V  L  Q  V  L  L  *  R  H  L  Y  W  R  Q :   L  K  V  V  I  L  Y  H  T  V  *  Y  L  S  L  S  A  D  S  P  F  L  L  V  C  Q  L  *  L  R  I  N  L  C  R :   F  *  R  S  Q  K  M  R  *  G  S  S  T  K  R  C  S  R  *  T  G :   *  S  C  I  L  L  K  L  H  *  D  W  *  L  G  K  Q  Y  L  K  I  L  V  L  V  D  C  D  P  Y  W  R  I  Y  *  W  M  L  C  M  R :   F  L  M  S  E  Q  A  M  M  *  *  M  P  L  *  L  M  R  S  L  *  E  L  R  G  E  D  A  G  V  K  S  F  M  A  K  V  H  L  T  D  T  S  H  R  I  D  Q  R  I  L  R :   Q  T  W  R  R  P  M  E  T  M  R  Q  N  R  N  F  L  P  L  L  L  C  K  C  S  V  R  C  I  S  G  L  T  C  V  Q  *  S  K  I  Q  I  N  N  V  I  *  I  E  L  N  V  L  :  S  S  F  R  N  T   </second_frame>
            <third_frame>   S  L  F  W  I  L  K  F  N  S  S  V  L  L  *  K  I  L  I  T  P  P  L  P  K  S  S  L  *  T  R  I  F  S  I  F  Q  F  S  L  S  D  G  S  S  L  K  P  H  K  S  L  L  S  S  D  K  H  Q  I  L  K  L  L  L  I  P  T  S  L  F  I  T  *  S  S  L  S  C  S  Y  I  *  K  E  R  I  F  T  S  F  S  C  F  S  L  L  G  R  *  V  S  T  E  L  S  R  Y  G  S  C  T  *  I  E  I  V  *  T  Y  G  F  Y  G  Y  Y  P  L  Q  I  L  Y  H  Q  *  F  S  H  G  S  F  T  Q  F  P  F  V  *  S  N  Q  M  G  *  F  G  L  K  F  W  S  *  F  F  F  I  Q  T  C  I  V  S  W  *  I  C  *  P  M  L  *  *  F  E  E  F  K  *  E  E  *  G  E  N  *  Y  V  *  *  L  W  G  T  S  *  D  L  A  T  T  W  *  G  D  C  G  S  S  W  C  E  I  C  S  G  G  *  R  G  S  S  W  F  G  F  G  F  W  R  W  V  W  F  R  V  K  R  W  V  L  G  W  I  Q  F  G  Y  P  I  S  H  T  K  A  T  V  *  R  T  *  *  V  C  N  W  T  G  E  S  *  K   : G  S  I  C  R  R  I  *  S  L  Q  E  N  I  *  *  L  F  T  *  V  :  A  C  R  K  *  Q  *  *  K  N  R  W  S  R  K  *  I  C  G  A  *  E  E  *  H  P  F  N  G  T  N  R  F  R :   E  N  F  T  C  Q  D  L  S  S  I  G  E  C  S  L  C  N  S  R  C  Y  D  T  N  S   : G  R  I  C  W  G  R  C  G  I  Y  S  I  *  A  P  H   : C  C  *  L  Q  C  S  S  C  S  A  R  H  S  V  Y  *  *  S  *  Q  N  H  E  K   : G  *  K  P  Q  H  Q  *  R  C  L  R  R  G  R  P  A  G  I  A  E  D  A  *  R  N   : N  C  Q  C  A  G  E  G  S  S  E  A  P  *  R  G  *  Y  S   : D  *  Y  Q  R  Y  S  L  Y  M  W  W  S  L  H  *  L  G  E  N  N  L  R  K  :  A  P  R  F  F  Y  R  I  W  C  T  S  S  H  K  H  E  D  W  W  C  Y  K  C  C  C  D  V  I  F  I  G  D   : S  *  K  *  *  S  Y  I  I  R  S  D  T  *  V  C  R  P  I  P  H  S  C  *  S  V  S  F  N  *  G  S  T  C  A   : G  S  N  G  A  K  K  C  A  R  E  A  V  Q  K  D  V  P  D  E  R   : G  K  V  A  F  C  *  S  C  T  K  I  G  S  *  E  S  N  I  *  K  Y  W  C  S  W  I  A  I  H  I  G  E  Y  I  D  G  C  Y  V  *   : D  S  *  C  Q  N  R  R  *  C  N  R  C  R  C  S  *  *  G  V  C  R  N  *  G  A  R  M  R  G  *  N  P  L  W  Q  R  C  I  *  P  T  L  P  T  E  *  I  K  G  F  *   : G  K  H  G  G  V  R  W  R  P  *  G  R  T  G  T  S  F  H  C  C  F  V  N  V  L  *  G  V  F  L  V  S  L  V  Y  S  N  L  K  F  K  *  T  M  L  F  K  *  S  S  M  Y  F :   H  P  L  E  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55196" stop="55723"/>
                    <exon start="55931" stop="55992"/>
                    <exon start="56167" stop="56267"/>
                    <exon start="56806" stop="56885"/>
                    <exon start="58269" stop="58319"/>
                    <exon start="58506" stop="58580"/>
                    <exon start="58685" stop="58762"/>
                    <exon start="59610" stop="59666"/>
                    <exon start="60156" stop="60226"/>
                    <exon start="60313" stop="60412"/>
                    <exon start="61062" stop="61166"/>
                    <exon start="61386" stop="61448"/>
                    <exon start="61615" stop="61737"/>
                    <exon start="62798" stop="62953"/>
                    <exon start="63046" stop="63114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1716</number_coding_nucleotides>
                  <number_encoded_amino_acids>572</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADMAAVLRSKSSRRTASMAITHFRYFIINDFHTGHLPNFHLCSRTKWDNLVSNSGHSSSLFKPVSFRGEFVDRCYDNLKNSSRKSKEKINMSSNYGEPPEIWQPPGEGIVVRPGVKFVQVGEGEVPGSGSGSGGGFGSGSKDGSWGGSNLGTQFPTPKQLCRGLDKFVIGQERAKKVLSVAVYNHYKRIYNDSSHKWPAGNDSSEKTDGVENESVELEKSNILLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRTNMRTGGVTSAAVTSSLLETVESSDLISYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKMFQMNGVKLHFVEAALRLVARKAISKNTGARGLRSILENILMDAMYEIPDVRTGDDVIDAVVVDEESVGTEGRGCGGKILYGKGAFDRHFPQNRSKDSEANMEASDGDHEAEQELPSIVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56159" e_stop="56267"/>
            <exon e_start="56801" e_stop="56885"/>
            <exon e_start="58269" e_stop="58319"/>
            <exon e_start="58506" e_stop="58580"/>
            <exon e_start="58685" e_stop="58762"/>
            <exon e_start="59610" e_stop="59666"/>
            <exon e_start="60156" e_stop="60226"/>
            <exon e_start="60313" e_stop="60412"/>
            <exon e_start="61062" e_stop="61166"/>
            <exon e_start="61386" e_stop="61448"/>
            <exon e_start="61615" e_stop="61737"/>
            <exon e_start="62798" e_stop="62953"/>
            <exon e_start="63046" e_stop="63258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.254" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56159" e_stop="56267" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.908">
            <gDNA_intron_boundary i_start="56268" i_stop="56800" i_length="533"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56801" e_stop="56885" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.967">
            <gDNA_intron_boundary i_start="56886" i_stop="58268" i_length="1383"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58269" e_stop="58319" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58320" i_stop="58505" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58506" e_stop="58580" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.945">
            <gDNA_intron_boundary i_start="58581" i_stop="58684" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58685" e_stop="58762" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58763" i_stop="59609" i_length="847"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59610" e_stop="59666" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="59667" i_stop="60155" i_length="489"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="60156" e_stop="60226" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60227" i_stop="60312" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="60313" e_stop="60412" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.932" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60413" i_stop="61061" i_length="649"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="61062" e_stop="61166" e_length="105"/>
          </exon>
          <intron i_serial="9" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61167" i_stop="61385" i_length="219"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61386" e_stop="61448" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.254" acc_prob="0.988">
            <gDNA_intron_boundary i_start="61449" i_stop="61614" i_length="166"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61615" e_stop="61737" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61738" i_stop="62797" i_length="1060"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62798" e_stop="62953" e_length="156"/>
          </exon>
          <intron i_serial="12" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62954" i_stop="63045" i_length="92"/>
          </intron>
          <exon e_serial="13" e_score="0.991">
            <gDNA_exon_boundary e_start="63046" e_stop="63258" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56159" stop="56267"/>
              <exon start="56801" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56160" stop="56267"/>
              <exon start="56801" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56850" stop="56885"/>
              <exon start="58269" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58282" stop="58319"/>
              <exon start="58506" stop="58580"/>
              <exon start="58685" stop="58762"/>
              <exon start="59610" stop="59666"/>
              <exon start="60156" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60159" stop="60226"/>
              <exon start="60313" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60346" stop="60412"/>
              <exon start="61062" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61103" stop="61166"/>
              <exon start="61386" stop="61448"/>
              <exon start="61615" stop="61737"/>
              <exon start="62798" stop="62953"/>
              <exon start="63046" stop="63258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACCAAGGCCTGCAGGAAATGACAGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATCCTTTTAATGGGACCAACAGGTTCAG : GACAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTGGTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAG : GCAGGATATGTTGGGGAAGATGTGGAATCTATTCTATATAAGCTCCTCACT : GTTGCTGACTACAATGTAGCAGCTGCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAG : GCTGAAAGCCTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTTGAAGGAACA : ATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAATATTCAG : ATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAGAAAACAATCTCAGAAAG : GCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACAAACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACA : GTTGAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATTCTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAG : GTTCTAACGGAGCCAAAAAATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGG : GTAAAGTTGCATTTTGTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGTGGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAG : ATTCCTGATGTCAGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAGGGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCACAGAATAGATCAAAGGATTCTGAG : GCAAACATGGAGGCGTCCGATGGAGACCATGAGGCAGAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCTCACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGTACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTTGCTATTTATTCTTTGAT</gDNA_template>
            <first_frame> V  P  R  P  A  G  N  D  S  S  E  K  T  D  G  V  E  N  E  S  V  E  L  E  K  S  N  I  L  L  M  G  P  T  G  S   : G  Q  G  K  L  Y  L  P  R  P  *  L  D  W  *  M  F  P  L  *  *  Q  M  L  R  H  *  L  R :   Q  D  M  L  G  K  M  W  N  L  F  Y  I  S  S  S  L :   L  L  T  T  M  *  Q  L  L  S  K  A  *  C  I  L  M  K  L  T  K  S  R  K  R :   L  K  A  S  T  S  V  E  M  S  Q  E  R  A  S  S  R  H  C  *  R  C  L  K  E  Q :   L  S  M  C  R  R  R  E  L  G  S  T  L  E  G  I  I  F  R :   L  I  P  K  I  F  S  L  Y  V  V  E  P  S  L  T  W  R  K  Q  S  Q  K   : G  A  K  I  L  L  *  D  L  V  H  Q  F  A  Q  T  *  G  L  V  V  L  Q  V  L  L  *  R  H  L  Y  W  R  Q :   L  K  V  V  I  L  Y  H  T  V  *  Y  L  S  L  S  A  D  S  P  F  L  L  V  C  Q  L  *  L  R  I  N  L  C  R :   F  *  R  S  Q  K  M  R  *  G  S  S  T  K  R  C  S  R  *  T  G :   *  S  C  I  L  L  K  L  H  *  D  W  *  L  G  K  Q  Y  L  K  I  L  V  L  V  D  C  D  P  Y  W  R  I  Y  *  W  M  L  C  M  R :   F  L  M  S  E  Q  A  M  M  *  *  M  P  L  *  L  M  R  S  L  *  E  L  R  G  E  D  A  G  V  K  S  F  M  A  K  V  H  L  T  D  T  S  H  R  I  D  Q  R  I  L  R :   Q  T  W  R  R  P  M  E  T  M  R  Q  N  R  N  F  L  P  L  L  L  C  K  C  S  V  R  C  I  S  G  L  T  C  V  Q  *  S  K  I  Q  I  N  N  V  I  *  I  E  L  N  V  L  S  Y  C  I  L  L  C  F  Y  C  Y  L  A  I  Y  S  L   </first_frame>
            <second_frame>  Y  Q  G  L  Q  E  M  T  V  V  K  K  Q  M  E  *  K  M  N  L  W  S  L  R  R  V  T  S  F  *  W  D  Q  Q  V  Q  :  D  R  E  N  F  T  C  Q  D  L  S  S  I  G  E  C  S  L  C  N  S  R  C  Y  D  T  N  S   : G  R  I  C  W  G  R  C  G  I  Y  S  I  *  A  P  H   : C  C  *  L  Q  C  S  S  C  S  A  R  H  S  V  Y  *  *  S  *  Q  N  H  E  K   : G  *  K  P  Q  H  Q  *  R  C  L  R  R  G  R  P  A  G  I  A  E  D  A  *  R  N   : N  C  Q  C  A  G  E  G  S  S  E  A  P  *  R  G  *  Y  S   : D  *  Y  Q  R  Y  S  L  Y  M  W  W  S  L  H  *  L  G  E  N  N  L  R  K  :  A  P  R  F  F  Y  R  I  W  C  T  S  S  H  K  H  E  D  W  W  C  Y  K  C  C  C  D  V  I  F  I  G  D   : S  *  K  *  *  S  Y  I  I  R  S  D  T  *  V  C  R  P  I  P  H  S  C  *  S  V  S  F  N  *  G  S  T  C  A   : G  S  N  G  A  K  K  C  A  R  E  A  V  Q  K  D  V  P  D  E  R   : G  K  V  A  F  C  *  S  C  T  K  I  G  S  *  E  S  N  I  *  K  Y  W  C  S  W  I  A  I  H  I  G  E  Y  I  D  G  C  Y  V  *   : D  S  *  C  Q  N  R  R  *  C  N  R  C  R  C  S  *  *  G  V  C  R  N  *  G  A  R  M  R  G  *  N  P  L  W  Q  R  C  I  *  P  T  L  P  T  E  *  I  K  G  F  *   : G  K  H  G  G  V  R  W  R  P  *  G  R  T  G  T  S  F  H  C  C  F  V  N  V  L  *  G  V  F  L  V  S  L  V  Y  S  N  L  K  F  K  *  T  M  L  F  K  *  S  S  M  Y  F  H  T  A  F  C  C  V  F  T  V  I  L  L  F  I  L  *  </second_frame>
            <third_frame>   T  K  A  C  R  K  *  Q  *  *  K  N  R  W  S  R  K  *  I  C  G  A  *  E  E  *  H  P  F  N  G  T  N  R  F  R :   T  G  K  T  L  L  A  K  T  L  A  R  L  V  N  V  P  F  V  I  A  D  A  T  T  L  T  Q  :  A  G  Y  V  G  E  D  V  E  S  I  L  Y  K  L  L  T  :  V  A  D  Y  N  V  A  A  A  Q  Q  G  I  V  Y  I  D  E  V  D  K  I  T  K  K  :  A  E  S  L  N  I  S  R  D  V  S  G  E  G  V  Q  Q  A  L  L  K  M  L  E  G  T  :  I  V  N  V  P  E  K  G  A  R  K  H  P  R  G  D  N  I  Q  :  I  D  T  K  D  I  L  F  I  C  G  G  A  F  I  D  L  E  K  T  I  S  E  R :   R  Q  D  S  S  I  G  F  G  A  P  V  R  T  N  M  R  T  G  G  V  T  S  A  A  V  T  S  S  L  L  E  T  :  V  E  S  S  D  L  I  S  Y  G  L  I  P  E  F  V  G  R  F  P  I  L  V  S  L  S  A  L  T  E  D  Q  L  V  Q  :  V  L  T  E  P  K  N  A  L  G  K  Q  Y  K  K  M  F  Q  M  N  G  :  V  K  L  H  F  V  E  A  A  L  R  L  V  A  R  K  A  I  S  K  N  T  G  A  R  G  L  R  S  I  L  E  N  I  L  M  D  A  M  Y  E  :  I  P  D  V  R  T  G  D  D  V  I  D  A  V  V  V  D  E  E  S  V  G  T  E  G  R  G  C  G  G  K  I  L  Y  G  K  G  A  F  D  R  H  F  P  Q  N  R  S  K  D  S  E  :  A  N  M  E  A  S  D  G  D  H  E  A  E  Q  E  L  P  S  I  V  A  L  *  M  F  C  E  V  Y  F  W  S  H  L  C  T  V  I  *  N  S  N  K  Q  C  Y  L  N  R  A  Q  C  T  F  I  L  H  F  V  V  F  L  L  L  S  C  Y  L  F  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56239" stop="56267"/>
                    <exon start="56801" stop="56885"/>
                    <exon start="58269" stop="58319"/>
                    <exon start="58506" stop="58580"/>
                    <exon start="58685" stop="58762"/>
                    <exon start="59610" stop="59666"/>
                    <exon start="60156" stop="60226"/>
                    <exon start="60313" stop="60412"/>
                    <exon start="61062" stop="61166"/>
                    <exon start="61386" stop="61448"/>
                    <exon start="61615" stop="61737"/>
                    <exon start="62798" stop="62953"/>
                    <exon start="63046" stop="63114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPFNGTNRFRTGKTLLAKTLARLVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRTNMRTGGVTSAAVTSSLLETVESSDLISYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKMFQMNGVKLHFVEAALRLVARKAISKNTGARGLRSILENILMDAMYEIPDVRTGDDVIDAVVVDEESVGTEGRGCGGKILYGKGAFDRHFPQNRSKDSEANMEASDGDHEAEQELPSIVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="70923" PGL_stop="74885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70923" e_stop="71309"/>
            <exon e_start="73542" e_stop="73928"/>
            <exon e_start="74626" e_stop="74885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.189" e_score="0.997"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70923" e_stop="71309" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71310" i_stop="73541" i_length="2232"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="73542" e_stop="73928" e_length="387"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.189">
            <gDNA_intron_boundary i_start="73929" i_stop="74625" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="0.904">
            <gDNA_exon_boundary e_start="74626" e_stop="74885" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70923" stop="71309"/>
              <exon start="73542" stop="73699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70931" stop="71309"/>
              <exon start="73542" stop="73928"/>
              <exon start="74626" stop="74657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70932" stop="71309"/>
              <exon start="73542" stop="73807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70932" stop="71309"/>
              <exon start="73542" stop="73726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70932" stop="71309"/>
              <exon start="73542" stop="73693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73557" stop="73928"/>
              <exon start="74626" stop="74885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73557" stop="73928"/>
              <exon start="74626" stop="74727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGATCTCTATAATTTCATTTCTTTTGCTTCTTCTTCTTGTTGTTGTTCTTGCCGTTAATATATCAAGAAATGTGAATTTTGTGATATGCGCCATTTGTGACTTGAAATTTATTGGGTGGAGAGAAAGATTGAATCTTTTTCTCTATTTGATAATTGGGTCAAAGTGGGTTGCTTTCAGATTTTGTAAAGGAGCAATGGAAATGGAGAACATTGAGTGTGTTTCAACAACTGATGGGATTGAAGATGAAGAGATCCAGTTATCACATAATCAATTTTCTTCTGCAAAACCTCATAATATTCTTTTTCCCGGACTTGCCCCTACTAGTGTACATGAATTGCTTGAATGCCCCGTTTGTACCAATTCTATGTATCCACCAATTCATCAG : TGTCACAATGGGCACACACTTTGTTCTACCTGCAAAACAAGGGTGCACAATCGATGTCCTACATGTAGACAAGAGCTTGGTGATATAAGGTGCTTAGCTCTGGAGAAGGTTGCAGAGTCACTTGAACTGCCTTGCAAATATTTTTCCTTGGGATGCCCAGAAATATTCCCGTATTACAGTAAGCTCAAGCATGAGGCACTGTGCAACTTTAGACCATACAATTGCCCATATGCTGGATCAGAATGTTCAGTGACTGGTGACATCCCTTATTTGGTTTCACATTTAAGAGATGATCACAAAGTGGATATGCACACGGGGTGCACATTCAACCATCGTTACGTGAAATCAAATCCTCGAGAAGTAGAAAATGCCACATGGATGCTGACG : GTCTTCCATTGTTTTGGACAGTATTTCTGTCTCCACTTTGAGGCCTTCCAGCTTGGCATGGCCCCTGTTTATATGGCATTTCTACGATTTATGGGTGATGAATCTGAGGCACGCAATTACAGTTATAGTCTCGAAGTAGGAGGAAATGGTAGAAAGCTCATATGGGAGGGAACACCAAGAAGTGTTCGAGATAGCCACCGCAAGGTCAGGGACAGTCATGATGGTCTAATAATCCAACGTAACATGGCACTTTTCTTTTC</gDNA_template>
            <first_frame> P  I  S  I  I  S  F  L  L  L  L  L  L  V  V  V  L  A  V  N  I  S  R  N  V  N  F  V  I  C  A  I  C  D  L  K  F  I  G  W  R  E  R  L  N  L  F  L  Y  L  I  I  G  S  K  W  V  A  F  R  F  C  K  G  A  M  E  M  E  N  I  E  C  V  S  T  T  D  G  I  E  D  E  E  I  Q  L  S  H  N  Q  F  S  S  A  K  P  H  N  I  L  F  P  G  L  A  P  T  S  V  H  E  L  L  E  C  P  V  C  T  N  S  M  Y  P  P  I  H  Q  :  C  H  N  G  H  T  L  C  S  T  C  K  T  R  V  H  N  R  C  P  T  C  R  Q  E  L  G  D  I  R  C  L  A  L  E  K  V  A  E  S  L  E  L  P  C  K  Y  F  S  L  G  C  P  E  I  F  P  Y  Y  S  K  L  K  H  E  A  L  C  N  F  R  P  Y  N  C  P  Y  A  G  S  E  C  S  V  T  G  D  I  P  Y  L  V  S  H  L  R  D  D  H  K  V  D  M  H  T  G  C  T  F  N  H  R  Y  V  K  S  N  P  R  E  V  E  N  A  T  W  M  L  T  :  V  F  H  C  F  G  Q  Y  F  C  L  H  F  E  A  F  Q  L  G  M  A  P  V  Y  M  A  F  L  R  F  M  G  D  E  S  E  A  R  N  Y  S  Y  S  L  E  V  G  G  N  G  R  K  L  I  W  E  G  T  P  R  S  V  R  D  S  H  R  K  V  R  D  S  H  D  G  L  I  I  Q  R  N  M  A  L  F  F   </first_frame>
            <second_frame>  R  S  L  *  F  H  F  F  C  F  F  F  L  L  L  F  L  P  L  I  Y  Q  E  M  *  I  L  *  Y  A  P  F  V  T  *  N  L  L  G  G  E  K  D  *  I  F  F  S  I  *  *  L  G  Q  S  G  L  L  S  D  F  V  K  E  Q  W  K  W  R  T  L  S  V  F  Q  Q  L  M  G  L  K  M  K  R  S  S  Y  H  I  I  N  F  L  L  Q  N  L  I  I  F  F  F  P  D  L  P  L  L  V  Y  M  N  C  L  N  A  P  F  V  P  I  L  C  I  H  Q  F  I  S :   V  T  M  G  T  H  F  V  L  P  A  K  Q  G  C  T  I  D  V  L  H  V  D  K  S  L  V  I  *  G  A  *  L  W  R  R  L  Q  S  H  L  N  C  L  A  N  I  F  P  W  D  A  Q  K  Y  S  R  I  T  V  S  S  S  M  R  H  C  A  T  L  D  H  T  I  A  H  M  L  D  Q  N  V  Q  *  L  V  T  S  L  I  W  F  H  I  *  E  M  I  T  K  W  I  C  T  R  G  A  H  S  T  I  V  T  *  N  Q  I  L  E  K  *  K  M  P  H  G  C  *  R :   S  S  I  V  L  D  S  I  S  V  S  T  L  R  P  S  S  L  A  W  P  L  F  I  W  H  F  Y  D  L  W  V  M  N  L  R  H  A  I  T  V  I  V  S  K  *  E  E  M  V  E  S  S  Y  G  R  E  H  Q  E  V  F  E  I  A  T  A  R  S  G  T  V  M  M  V  *  *  S  N  V  T  W  H  F  S  F  </second_frame>
            <third_frame>   D  L  Y  N  F  I  S  F  A  S  S  S  C  C  C  S  C  R  *  Y  I  K  K  C  E  F  C  D  M  R  H  L  *  L  E  I  Y  W  V  E  R  K  I  E  S  F  S  L  F  D  N  W  V  K  V  G  C  F  Q  I  L  *  R  S  N  G  N  G  E  H  *  V  C  F  N  N  *  W  D  *  R  *  R  D  P  V  I  T  *  S  I  F  F  C  K  T  S  *  Y  S  F  S  R  T  C  P  Y  *  C  T  *  I  A  *  M  P  R  L  Y  Q  F  Y  V  S  T  N  S  S   : V  S  Q  W  A  H  T  L  F  Y  L  Q  N  K  G  A  Q  S  M  S  Y  M  *  T  R  A  W  *  Y  K  V  L  S  S  G  E  G  C  R  V  T  *  T  A  L  Q  I  F  F  L  G  M  P  R  N  I  P  V  L  Q  *  A  Q  A  *  G  T  V  Q  L  *  T  I  Q  L  P  I  C  W  I  R  M  F  S  D  W  *  H  P  L  F  G  F  T  F  K  R  *  S  Q  S  G  Y  A  H  G  V  H  I  Q  P  S  L  R  E  I  K  S  S  R  S  R  K  C  H  M  D  A  D   : G  L  P  L  F  W  T  V  F  L  S  P  L  *  G  L  P  A  W  H  G  P  C  L  Y  G  I  S  T  I  Y  G  *  *  I  *  G  T  Q  L  Q  L  *  S  R  S  R  R  K  W  *  K  A  H  M  G  G  N  T  K  K  C  S  R  *  P  P  Q  G  Q  G  Q  S  *  W  S  N  N  P  T  *  H  G  T  F  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70923" stop="71309"/>
                    <exon start="73542" stop="73928"/>
                    <exon start="74626" stop="74883"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISIISFLLLLLLVVVLAVNISRNVNFVICAICDLKFIGWRERLNLFLYLIIGSKWVAFRFCKGAMEMENIECVSTTDGIEDEEIQLSHNQFSSAKPHNILFPGLAPTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSVTGDIPYLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDESEARNYSYSLEVGGNGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="75190" PGL_stop="73975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75190" e_stop="74746"/>
            <exon e_start="74255" e_stop="73975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.399" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75190" e_stop="74746" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.399" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74745" i_stop="74256" i_length="490"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="74255" e_stop="73975" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75190" stop="74746"/>
              <exon start="74255" stop="73975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75050" stop="74746"/>
              <exon start="74255" stop="73978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322566" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTAAGATGGTTATTAACAATTGATACAACTAAATCTTCAGGGACAATGATATGTAGCTGGGCAGAGCATCAAGTTTCGAGGGTACAAACAGATTGATGTCTGTCTCTTTACACCCACTGTCACACGCACATACATCCACAGGAAAAAATAGGGGAGGGAAAAGGAAAAAAAAGAAAGAACAATCACTCTGGAGAAATAAATTAGCTACACAGATTCGGTATGCACACTCCACCTTCTGGATTTTGCTGTTCTTTCCATATCCTTCCAGTGACTCGAAGTTTTAGCTCCTTTCGATCCCCTCCAGAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCATGACTGTCCCTGACCTTGCGGTGGCTATCTCGAACACTTCTTGGTGTTCCCTCCCATATGAGCTTTCTACCATTTCCTCCTACTTCGAGACTATAACT : GTCCAATCTATTCCTTAACAGAGTCTCTAGGAAGGGATCTACCTATCAAAGAAAACATGAGAGAAAATATTGCAGAAACAGAGAACAAGATAATACAGGGTTTCCCAAAGCTATAATTTGGTTATCCACATTCTGCCATTTCAATAATTCATCCACAGAACTTTTACGGGTCTATTTCTTAGCATCCTGATTGTTAGGGTGAATAAAAAGGATTCTTGAACTTTCATAAACCAAAATAGCACGGAACATACAACACATGAATCATGATGCTATGTTGAGCA</gDNA_template>
            <first_frame> L  *  D  G  Y  *  Q  L  I  Q  L  N  L  Q  G  Q  *  Y  V  A  G  Q  S  I  K  F  R  G  Y  K  Q  I  D  V  C  L  F  T  P  T  V  T  R  T  Y  I  H  R  K  K  *  G  R  E  K  E  K  K  E  R  T  I  T  L  E  K  *  I  S  Y  T  D  S  V  C  T  L  H  L  L  D  F  A  V  L  S  I  S  F  Q  *  L  E  V  L  A  P  F  D  P  L  Q  K  R  K  V  P  C  Y  V  G  L  L  D  H  H  D  C  P  *  P  C  G  G  Y  L  E  H  F  L  V  F  P  P  I  *  A  F  Y  H  F  L  L  L  R  D  Y  N   : C  P  I  Y  S  L  T  E  S  L  G  R  D  L  P  I  K  E  N  M  R  E  N  I  A  E  T  E  N  K  I  I  Q  G  F  P  K  L  *  F  G  Y  P  H  S  A  I  S  I  I  H  P  Q  N  F  Y  G  S  I  S  *  H  P  D  C  *  G  E  *  K  G  F  L  N  F  H  K  P  K  *  H  G  T  Y  N  T  *  I  M  M  L  C  *  A </first_frame>
            <second_frame>  C  K  M  V  I  N  N  *  Y  N  *  I  F  R  D  N  D  M  *  L  G  R  A  S  S  F  E  G  T  N  R  L  M  S  V  S  L  H  P  L  S  H  A  H  T  S  T  G  K  N  R  G  G  K  R  K  K  K  K  E  Q  S  L  W  R  N  K  L  A  T  Q  I  R  Y  A  H  S  T  F  W  I  L  L  F  F  P  Y  P  S  S  D  S  K  F  *  L  L  S  I  P  S  R  K  E  K  C  H  V  T  L  D  Y  *  T  I  M  T  V  P  D  L  A  V  A  I  S  N  T  S  W  C  S  L  P  Y  E  L  S  T  I  S  S  Y  F  E  T  I  T  :  V  Q  S  I  P  *  Q  S  L  *  E  G  I  Y  L  S  K  K  T  *  E  K  I  L  Q  K  Q  R  T  R  *  Y  R  V  S  Q  S  Y  N  L  V  I  H  I  L  P  F  Q  *  F  I  H  R  T  F  T  G  L  F  L  S  I  L  I  V  R  V  N  K  K  D  S  *  T  F  I  N  Q  N  S  T  E  H  T  T  H  E  S  *  C  Y  V  E   </second_frame>
            <third_frame>   V  R  W  L  L  T  I  D  T  T  K  S  S  G  T  M  I  C  S  W  A  E  H  Q  V  S  R  V  Q  T  D  *  C  L  S  L  Y  T  H  C  H  T  H  I  H  P  Q  E  K  I  G  E  G  K  G  K  K  R  K  N  N  H  S  G  E  I  N  *  L  H  R  F  G  M  H  T  P  P  S  G  F  C  C  S  F  H  I  L  P  V  T  R  S  F  S  S  F  R  S  P  P  E  K  K  S  A  M  L  R  W  I  I  R  P  S  *  L  S  L  T  L  R  W  L  S  R  T  L  L  G  V  P  S  H  M  S  F  L  P  F  P  P  T  S  R  L  *  L :   S  N  L  F  L  N  R  V  S  R  K  G  S  T  Y  Q  R  K  H  E  R  K  Y  C  R  N  R  E  Q  D  N  T  G  F  P  K  A  I  I  W  L  S  T  F  C  H  F  N  N  S  S  T  E  L  L  R  V  Y  F  L  A  S  *  L  L  G  *  I  K  R  I  L  E  L  S  *  T  K  I  A  R  N  I  Q  H  M  N  H  D  A  M  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75132" stop="74905"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGRASSFEGTNRLMSVSLHPLSHAHTSTGKNRGGKRKKKKEQSLWRNKLATQIRYAHSTFWILLFFPYPSSDSKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="77317" PGL_stop="76099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77317" e_stop="76277"/>
            <exon e_start="76103" e_stop="76099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.960" e_score="0.997"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="77317" e_stop="76277" e_length="1041"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.960">
            <gDNA_intron_boundary i_start="76276" i_stop="76104" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="0.400">
            <gDNA_exon_boundary e_start="76103" e_stop="76099" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77317" stop="76580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77316" stop="76704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77038" stop="76277"/>
              <exon start="76103" stop="76099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76938" stop="76439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76907" stop="76575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76786" stop="76277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76786" stop="76277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGTAAATG : TTGAA</gDNA_template>
            <first_frame> G  R  F  K  D  A  I  N  V  F  N  S  M  G  E  K  R  C  R  P  D  T  L  S  Y  N  N  L  I  E  Q  L  C  K  N  D  L  L  G  E  A  E  E  L  Y  K  D  M  G  E  K  G  V  S  P  D  E  F  T  F  V  L  L  M  D  T  C  F  K  E  S  R  P  D  D  A  A  A  Y  F  K  T  M  V  E  S  K  L  R  P  N  L  G  V  Y  D  R  L  V  D  G  L  V  K  V  G  K  V  D  E  A  K  S  F  F  D  L  M  M  G  K  L  R  M  N  D  D  S  Y  K  F  M  M  N  A  L  F  D  I  G  Q  H  D  E  V  L  K  I  V  D  R  M  L  R  E  D  P  A  D  F  S  D  E  L  Q  E  F  V  R  E  A  L  A  K  E  G  R  D  E  E  L  T  K  L  M  D  D  I  E  R  E  K  K  E  A  A  D  R  E  A  E  A  A  E  K  A  K  A  S  A  R  A  A  V  S  S  L  I  N  S  P  K  L  F  G  N  K  Q  P  E  E  Q  S  T  I  T  G  E  A  A  S  I  N  D  N  D  K  Q  E  E  V  S  V  Q  E  T  A  A  E  A  S  S  S  G  E  G  G  E  A  E  S  L  V  A  A  E  A  R  S  D  G  A  L  *  *  G  S  R  M  I  K  Y  V  G  *  Q  L  M  R  N  S  S  R  F  P  F  T  L  P  H  L  Q  A  R  T  I  *  C  S  Y  D  K  L  L  V  G  N  C  L  *  F  R  W  K  *  N  E  M  I  F  L  I  I  F  K  *  M  :  L   </first_frame>
            <second_frame>  E  G  S  K  T  Q  S  M  F  L  T  A  W  E  R  R  G  V  D  Q  T  H  C  L  T  I  I  *  L  S  S  C  A  K  M  T  C  W  V  R  L  R  S  S  I  R  I  W  A  K  K  G  S  A  L  M  S  S  R  L  F  C  *  W  I  L  A  L  K  K  V  G  L  M  T  L  L  R  I  L  R  P  W  W  S  L  N  *  G  L  I  L  E  F  M  I  G  W  L  M  V  W  S  K  L  V  K  L  M  K  Q  N  H  F  L  I  *  *  W  E  S  S  G  *  M  M  I  A  T  S  L  *  *  T  H  C  L  I  L  G  S  M  M  R  C  L  R  L  W  I  E  C  *  G  R  I  Q  L  I  S  L  M  S  C  K  S  L  F  E  K  P  W  R  R  K  V  E  M  R  S  *  P  N  L  W  M  I  L  K  G  R  R  K  K  L  L  T  G  R  L  K  Q  L  K  K  R  R  P  V  Q  E  L  L  F  P  L  *  *  I  V  L  N  C  L  E  I  S  S  L  K  S  S  Q  Q  L  L  V  R  L  P  A  S  T  T  M  T  N  K  R  R  *  V  F  K  K  L  L  R  R  L  V  P  L  V  R  V  E  K  L  R  A  L  L  L  Q  K  L  E  V  M  V  H  F  D  E  V  A  E  *  *  N  M  L  G  D  N  *  *  E  T  V  V  G  F  L  S  L  C  H  T  C  K  H  E  L  Y  N  A  L  M  I  N  Y  *  W  E  I  V  C  N  L  D  G  N  E  M  K  *  F  F  *  S  S  S  S  K  C :   *  </second_frame>
            <third_frame>   K  V  Q  R  R  N  Q  C  F  *  Q  H  G  R  E  E  V  *  T  R  H  I  V  L  Q  *  S  D  *  A  V  V  Q  K  *  L  V  G  *  G  *  G  A  L  *  G  Y  G  R  K  R  G  Q  P  *  *  V  H  V  C  F  V  D  G  Y  L  L  *  R  K  *  A  *  *  R  C  C  V  F  *  D  H  G  G  V  *  I  E  A  *  S  W  S  L  *  *  V  G  *  W  F  G  Q  S  W  *  S  *  *  S  K  I  I  F  *  S  D  D  G  K  A  Q  D  E  *  *  *  L  Q  V  Y  D  E  R  I  V  *  Y  W  A  A  *  *  G  A  *  D  C  G  *  N  V  E  G  G  S  S  *  F  L  *  *  V  A  R  V  C  S  R  S  L  G  E  G  R  *  R  *  G  V  D  Q  T  Y  G  *  Y  *  K  G  E  E  R  S  C  *  Q  G  G  *  S  S  *  K  S  E  G  Q  C  K  S  C  C  F  L  F  D  K  *  S  *  I  V  W  K  *  A  A  *  R  A  V  N  N  Y  W  *  G  C  Q  H  Q  R  Q  *  Q  T  R  G  G  E  C  S  R  N  C  C  G  G  *  F  L  W  *  G  W  R  S  *  E  P  C  C  C  R  S  *  K  *  W  C  T  L  M  R  *  Q  N  D  K  I  C  W  V  T  T  N  E  K  Q  *  *  V  S  F  H  S  A  T  L  A  S  T  N  Y  I  M  L  L  *  *  I  T  S  G  K  L  F  V  I  *  M  E  M  K  *  N  D  F  F  D  H  L  Q  V  N   : V  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77317" stop="76466"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRFKDAINVFNSMGEKRCRPDTLSYNNLIEQLCKNDLLGEAEELYKDMGEKGVSPDEFTFVLLMDTCFKESRPDDAAAYFKTMVESKLRPNLGVYDRLVDGLVKVGKVDEAKSFFDLMMGKLRMNDDSYKFMMNALFDIGQHDEVLKIVDRMLREDPADFSDELQEFVREALAKEGRDEELTKLMDDIEREKKEAADREAEAAEKAKASARAAVSSLINSPKLFGNKQPEEQSTITGEAASINDNDKQEEVSVQETAAEASSSGEGGEAESLVAAEARSDGAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77317" e_stop="76220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="77317" e_stop="76220" e_length="1098"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77317" stop="76580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77316" stop="76704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76938" stop="76220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76938" stop="76439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76907" stop="76575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76786" stop="76277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76786" stop="76277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGGTTCAAAGACGCAATCAATGTTTTTAACAGCATGGGAGAGAAGAGGTGTAGACCAGACACATTGTCTTACAATAATCTGATTGAGCAGTTGTGCAAAAATGACTTGTTGGGTGAGGCTGAGGAGCTCTATAAGGATATGGGCGAAAAAGGGGTCAGCCCTGATGAGTTCACGTTTGTTTTGTTGATGGATACTTGCTTTAAAGAAAGTAGGCCTGATGACGCTGCTGCGTATTTTAAGACCATGGTGGAGTCTAAATTGAGGCCTAATCTTGGAGTTTATGATAGGTTGGTTGATGGTTTGGTCAAAGTTGGTAAAGTTGATGAAGCAAAATCATTTTTTGATCTGATGATGGGAAAGCTCAGGATGAATGATGATAGCTACAAGTTTATGATGAACGCATTGTTTGATATTGGGCAGCATGATGAGGTGCTTAAGATTGTGGATAGAATGTTGAGGGAGGATCCAGCTGATTTCTCTGATGAGTTGCAAGAGTTTGTTCGAGAAGCCTTGGCGAAGGAAGGTAGAGATGAGGAGTTGACCAAACTTATGGATGATATTGAAAGGGAGAAGAAAGAAGCTGCTGACAGGGAGGCTGAAGCAGCTGAAAAAGCGAAGGCCAGTGCAAGAGCTGCTGTTTCCTCTTTGATAAATAGTCCTAAATTGTTTGGAAATAAGCAGCCTGAAGAGCAGTCAACAATTACTGGTGAGGCTGCCAGCATCAACGACAATGACAAACAAGAGGAGGTGAGTGTTCAAGAAACTGCTGCGGAGGCTAGTTCCTCTGGTGAGGGTGGAGAAGCTGAGAGCCTTGTTGCTGCAGAAGCTAGAAGTGATGGTGCACTTTGATGAGGTAGCAGAATGATAAAATATGTTGGGTGACAACTAATGAGAAACAGTAGTAGGTTTCCTTTCACTCTGCCACACTTGCAAGCACGAACTATATAATGCTCTTATGATAAATTACTAGTGGGAAATTGTTTGTAATTTAGATGGAAATGAAATGAAATGATTTTTTTGATCATCTTCAAGTAAATGGTGAGTAACAAATTGCAATGCAGCAATATATCTGGTCTAAATCTAACTCGTTTCATT</gDNA_template>
            <first_frame> G  R  F  K  D  A  I  N  V  F  N  S  M  G  E  K  R  C  R  P  D  T  L  S  Y  N  N  L  I  E  Q  L  C  K  N  D  L  L  G  E  A  E  E  L  Y  K  D  M  G  E  K  G  V  S  P  D  E  F  T  F  V  L  L  M  D  T  C  F  K  E  S  R  P  D  D  A  A  A  Y  F  K  T  M  V  E  S  K  L  R  P  N  L  G  V  Y  D  R  L  V  D  G  L  V  K  V  G  K  V  D  E  A  K  S  F  F  D  L  M  M  G  K  L  R  M  N  D  D  S  Y  K  F  M  M  N  A  L  F  D  I  G  Q  H  D  E  V  L  K  I  V  D  R  M  L  R  E  D  P  A  D  F  S  D  E  L  Q  E  F  V  R  E  A  L  A  K  E  G  R  D  E  E  L  T  K  L  M  D  D  I  E  R  E  K  K  E  A  A  D  R  E  A  E  A  A  E  K  A  K  A  S  A  R  A  A  V  S  S  L  I  N  S  P  K  L  F  G  N  K  Q  P  E  E  Q  S  T  I  T  G  E  A  A  S  I  N  D  N  D  K  Q  E  E  V  S  V  Q  E  T  A  A  E  A  S  S  S  G  E  G  G  E  A  E  S  L  V  A  A  E  A  R  S  D  G  A  L  *  *  G  S  R  M  I  K  Y  V  G  *  Q  L  M  R  N  S  S  R  F  P  F  T  L  P  H  L  Q  A  R  T  I  *  C  S  Y  D  K  L  L  V  G  N  C  L  *  F  R  W  K  *  N  E  M  I  F  L  I  I  F  K  *  M  V  S  N  K  L  Q  C  S  N  I  S  G  L  N  L  T  R  F  I </first_frame>
            <second_frame>  E  G  S  K  T  Q  S  M  F  L  T  A  W  E  R  R  G  V  D  Q  T  H  C  L  T  I  I  *  L  S  S  C  A  K  M  T  C  W  V  R  L  R  S  S  I  R  I  W  A  K  K  G  S  A  L  M  S  S  R  L  F  C  *  W  I  L  A  L  K  K  V  G  L  M  T  L  L  R  I  L  R  P  W  W  S  L  N  *  G  L  I  L  E  F  M  I  G  W  L  M  V  W  S  K  L  V  K  L  M  K  Q  N  H  F  L  I  *  *  W  E  S  S  G  *  M  M  I  A  T  S  L  *  *  T  H  C  L  I  L  G  S  M  M  R  C  L  R  L  W  I  E  C  *  G  R  I  Q  L  I  S  L  M  S  C  K  S  L  F  E  K  P  W  R  R  K  V  E  M  R  S  *  P  N  L  W  M  I  L  K  G  R  R  K  K  L  L  T  G  R  L  K  Q  L  K  K  R  R  P  V  Q  E  L  L  F  P  L  *  *  I  V  L  N  C  L  E  I  S  S  L  K  S  S  Q  Q  L  L  V  R  L  P  A  S  T  T  M  T  N  K  R  R  *  V  F  K  K  L  L  R  R  L  V  P  L  V  R  V  E  K  L  R  A  L  L  L  Q  K  L  E  V  M  V  H  F  D  E  V  A  E  *  *  N  M  L  G  D  N  *  *  E  T  V  V  G  F  L  S  L  C  H  T  C  K  H  E  L  Y  N  A  L  M  I  N  Y  *  W  E  I  V  C  N  L  D  G  N  E  M  K  *  F  F  *  S  S  S  S  K  W  *  V  T  N  C  N  A  A  I  Y  L  V  *  I  *  L  V  S   </second_frame>
            <third_frame>   K  V  Q  R  R  N  Q  C  F  *  Q  H  G  R  E  E  V  *  T  R  H  I  V  L  Q  *  S  D  *  A  V  V  Q  K  *  L  V  G  *  G  *  G  A  L  *  G  Y  G  R  K  R  G  Q  P  *  *  V  H  V  C  F  V  D  G  Y  L  L  *  R  K  *  A  *  *  R  C  C  V  F  *  D  H  G  G  V  *  I  E  A  *  S  W  S  L  *  *  V  G  *  W  F  G  Q  S  W  *  S  *  *  S  K  I  I  F  *  S  D  D  G  K  A  Q  D  E  *  *  *  L  Q  V  Y  D  E  R  I  V  *  Y  W  A  A  *  *  G  A  *  D  C  G  *  N  V  E  G  G  S  S  *  F  L  *  *  V  A  R  V  C  S  R  S  L  G  E  G  R  *  R  *  G  V  D  Q  T  Y  G  *  Y  *  K  G  E  E  R  S  C  *  Q  G  G  *  S  S  *  K  S  E  G  Q  C  K  S  C  C  F  L  F  D  K  *  S  *  I  V  W  K  *  A  A  *  R  A  V  N  N  Y  W  *  G  C  Q  H  Q  R  Q  *  Q  T  R  G  G  E  C  S  R  N  C  C  G  G  *  F  L  W  *  G  W  R  S  *  E  P  C  C  C  R  S  *  K  *  W  C  T  L  M  R  *  Q  N  D  K  I  C  W  V  T  T  N  E  K  Q  *  *  V  S  F  H  S  A  T  L  A  S  T  N  Y  I  M  L  L  *  *  I  T  S  G  K  L  F  V  I  *  M  E  M  K  *  N  D  F  F  D  H  L  Q  V  N  G  E  *  Q  I  A  M  Q  Q  Y  I  W  S  K  S  N  S  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77317" stop="76466"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRFKDAINVFNSMGEKRCRPDTLSYNNLIEQLCKNDLLGEAEELYKDMGEKGVSPDEFTFVLLMDTCFKESRPDDAAAYFKTMVESKLRPNLGVYDRLVDGLVKVGKVDEAKSFFDLMMGKLRMNDDSYKFMMNALFDIGQHDEVLKIVDRMLREDPADFSDELQEFVREALAKEGRDEELTKLMDDIEREKKEAADREAEAAEKAKASARAAVSSLINSPKLFGNKQPEEQSTITGEAASINDNDKQEEVSVQETAAEASSSGEGGEAESLVAAEARSDGAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="76143" PGL_stop="76916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76143" e_stop="76916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="76143" e_stop="76916" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76143" stop="76707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76321" stop="76916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATAACACTATAATACAGGTCTCACAGTAGTACATTCACAAAATAACTTAAGTACTACTGTACTAGTGAAACAAAAAATGAAACGAGTTAGATTTAGACCAGATATATTGCTGCATTGCAATTTGTTACTCACCATTTACTTGAAGATGATCAAAAAAATCATTTCATTTCATTTCCATCTAAATTACAAACAATTTCCCACTAGTAATTTATCATAAGAGCATTATATAGTTCGTGCTTGCAAGTGTGGCAGAGTGAAAGGAAACCTACTACTGTTTCTCATTAGTTGTCACCCAACATATTTTATCATTCTGCTACCTCATCAAAGTGCACCATCACTTCTAGCTTCTGCAGCAACAAGGCTCTCAGCTTCTCCACCCTCACCAGAGGAACTAGCCTCCGCAGCAGTTTCTTGAACACTCACCTCCTCTTGTTTGTCATTGTCGTTGATGCTGGCAGCCTCACCAGTAATTGTTGACTGCTCTTCAGGCTGCTTATTTCCAAACAATTTAGGACTATTTATCAAAGAGGAAACAGCAGCTCTTGCACTGGCCTTCGCTTTTTCAGCTGCTTCAGCCTCCCTGTCAGCAGCTTCTTTCTTCTCCCTTTCAATATCATCCATAAGTTTGGTCAACTCCTCATCTCTACCTTCCTTCGCCAAGGCTTCTCGAACAAACTCTTGCAACTCATCAGAGAAATCAGCTGGATCCTCCCTCAACATTCTATCCACAATCTTAAGCACCTCATCATGCTGCCCAATATCAAACAATGCG</gDNA_template>
            <first_frame> *  *  H  Y  N  T  G  L  T  V  V  H  S  Q  N  N  L  S  T  T  V  L  V  K  Q  K  M  K  R  V  R  F  R  P  D  I  L  L  H  C  N  L  L  L  T  I  Y  L  K  M  I  K  K  I  I  S  F  H  F  H  L  N  Y  K  Q  F  P  T  S  N  L  S  *  E  H  Y  I  V  R  A  C  K  C  G  R  V  K  G  N  L  L  L  F  L  I  S  C  H  P  T  Y  F  I  I  L  L  P  H  Q  S  A  P  S  L  L  A  S  A  A  T  R  L  S  A  S  P  P  S  P  E  E  L  A  S  A  A  V  S  *  T  L  T  S  S  C  L  S  L  S  L  M  L  A  A  S  P  V  I  V  D  C  S  S  G  C  L  F  P  N  N  L  G  L  F  I  K  E  E  T  A  A  L  A  L  A  F  A  F  S  A  A  S  A  S  L  S  A  A  S  F  F  S  L  S  I  S  S  I  S  L  V  N  S  S  S  L  P  S  F  A  K  A  S  R  T  N  S  C  N  S  S  E  K  S  A  G  S  S  L  N  I  L  S  T  I  L  S  T  S  S  C  C  P  I  S  N  N  A </first_frame>
            <second_frame>  N  N  T  I  I  Q  V  S  Q  *  Y  I  H  K  I  T  *  V  L  L  Y  *  *  N  K  K  *  N  E  L  D  L  D  Q  I  Y  C  C  I  A  I  C  Y  S  P  F  T  *  R  *  S  K  K  S  F  H  F  I  S  I  *  I  T  N  N  F  P  L  V  I  Y  H  K  S  I  I  *  F  V  L  A  S  V  A  E  *  K  E  T  Y  Y  C  F  S  L  V  V  T  Q  H  I  L  S  F  C  Y  L  I  K  V  H  H  H  F  *  L  L  Q  Q  Q  G  S  Q  L  L  H  P  H  Q  R  N  *  P  P  Q  Q  F  L  E  H  S  P  P  L  V  C  H  C  R  *  C  W  Q  P  H  Q  *  L  L  T  A  L  Q  A  A  Y  F  Q  T  I  *  D  Y  L  S  K  R  K  Q  Q  L  L  H  W  P  S  L  F  Q  L  L  Q  P  P  C  Q  Q  L  L  S  S  P  F  Q  Y  H  P  *  V  W  S  T  P  H  L  Y  L  P  S  P  R  L  L  E  Q  T  L  A  T  H  Q  R  N  Q  L  D  P  P  S  T  F  Y  P  Q  S  *  A  P  H  H  A  A  Q  Y  Q  T  M   </second_frame>
            <third_frame>   I  T  L  *  Y  R  S  H  S  S  T  F  T  K  *  L  K  Y  Y  C  T  S  E  T  K  N  E  T  S  *  I  *  T  R  Y  I  A  A  L  Q  F  V  T  H  H  L  L  E  D  D  Q  K  N  H  F  I  S  F  P  S  K  L  Q  T  I  S  H  *  *  F  I  I  R  A  L  Y  S  S  C  L  Q  V  W  Q  S  E  R  K  P  T  T  V  S  H  *  L  S  P  N  I  F  Y  H  S  A  T  S  S  K  C  T  I  T  S  S  F  C  S  N  K  A  L  S  F  S  T  L  T  R  G  T  S  L  R  S  S  F  L  N  T  H  L  L  L  F  V  I  V  V  D  A  G  S  L  T  S  N  C  *  L  L  F  R  L  L  I  S  K  Q  F  R  T  I  Y  Q  R  G  N  S  S  S  C  T  G  L  R  F  F  S  C  F  S  L  P  V  S  S  F  F  L  L  P  F  N  I  I  H  K  F  G  Q  L  L  I  S  T  F  L  R  Q  G  F  S  N  K  L  L  Q  L  I  R  E  I  S  W  I  L  P  Q  H  S  I  H  N  L  K  H  L  I  M  L  P  N  I  K  Q  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76560" stop="76916"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLTSSCLSLSLMLAASPVIVDCSSGCLFPNNLGLFIKEETAALALAFAFSAASASLSAASFFSLSISSISLVNSSSLPSFAKASRTNSCNSSEKSAGSSLNILSTILSTSSCCPISNNA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76622" stop="76915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFRLLISKQFRTIYQRGNSSSCTGLRFFSCFSLPVSSFFLLPFNIIHKFGQLLISTFLRQGFSNKLLQLIREISWILPQHSIHNLKHLIMLPNIKQC</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76149" stop="76361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYNTGLTVVHSQNNLSTTVLVKQKMKRVRFRPDILLHCNLLLTIYLKMIKKIISFHFHLNYKQFPTSNLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76362" stop="76559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHYIVRACKCGRVKGNLLLFLISCHPTYFIILLPHQSAPSLLASAATRLSASPPSPEELASAAVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="79081" PGL_stop="78760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79081" e_stop="78760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="79081" e_stop="78760" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79081" stop="78760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79081" stop="78777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTTAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTATTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  I  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  *  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  L  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  Y  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  I  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79080" stop="78880"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMYVYCIIISVSKKIYVFLALYKNRNTIYTLLLYKARKNCISLQLYNSQLYNSLAFFSAIFEVKCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="86221" PGL_stop="79538"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86221" e_stop="85936"/>
            <exon e_start="85377" e_stop="85312"/>
            <exon e_start="84776" e_stop="84229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86221" e_stop="85936" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85377" e_stop="85312" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="84776" e_stop="84229" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86221" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86083" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86079" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86075" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86072" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86070" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86059" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86059" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86058" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86034" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86008" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84715" stop="84256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84682" stop="84256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84539" stop="84268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTACTACTTCAAAATTTCTAAGATTTAATGCTTTTTGATAGCATGAATTAATTTGAACTTGTGGTCTCTGTTAATTTGACCATTGCAAATTTCTGATAAAAATAAGAAAAAGGAAGTTAGGTTTCAACCAACAATGAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG : GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG : GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTATTTTGAAGATTTCACTCTATAGCTTATCATATATGTCACACCATGGACACTGCTGAT</gDNA_template>
            <first_frame> D  L  L  L  Q  N  F  *  D  L  M  L  F  D  S  M  N  *  F  E  L  V  V  S  V  N  L  T  I  A  N  F  *  *  K  *  E  K  G  S  *  V  S  T  N  N  E  *  R  S  K  C  W  R  R  R  T  N  C  C  R  G  R  R  R  S  S  K  A  E  E  L  T  A  E  G  G  C  *  Y  W  E  Y  C  *  Q  L  W  L  H  C  *  R  C  T   : G  Q  *  S  T  S  P  K  F  A  R  S  I  Y  D  G  D  A  C  I  *  D   : G  P  C  S  *  F  T  A  *  V  G  V  G  V  E  T  N  S  H  V  F  R  V  C  I  S  K  R  S  C  G  A  E  N  R  R  I  Y  R  T  G  *  E  N  R  M  H  V  I  *  N  W  R  G  G  S  C  *  P  *  G  A  *  V  T  L  L  F  F  C  R  K  N  Q  *  S  A  F  L  Q  P  R  N  N  A  L  T  M  A  T  I  T  F  F  F  P  I  G  F  S  S  Y  *  V  Y  L  S  T  L  K  V  V  T  G  Q  T  I  *  *  *  E  I  Q  F  G  P  N  L  L  L  Q  G  L  I  N  S  V  F  V  V  T  N  Q  L  H  S  S  *  E  K  Y  E  T  P  V  I  V  E  V  P  I  L  L  L  F  *  R  F  H  S  I  A  Y  H  I  C  H  T  M  D  T  A  D </first_frame>
            <second_frame>  I  Y  Y  F  K  I  S  K  I  *  C  F  L  I  A  *  I  N  L  N  L  W  S  L  L  I  *  P  L  Q  I  S  D  K  N  K  K  K  E  V  R  F  Q  P  T  M  N  K  G  A  N  V  G  G  G  G  P  T  A  A  A  A  A  A  A  A  Q  K  Q  K  S  L  L  Q  R  V  D  A  D  I  G  N  I  V  D  N  Y  G  F  I  V  N  A  A  R  :  V  N  D  P  P  V  R  N  S  Q  E  A  F  M  M  E  M  R  A  S  R  M  :  V  H  A  A  D  S  L  L  K  L  V  S  E  L  K  Q  T  A  M  F  S  G  F  A  S  L  N  D  H  V  E  Q  R  T  E  E  F  T  E  Q  A  E  K  T  E  C  M  L  S  R  I  G  E  E  A  A  A  S  L  K  E  L  E  S  H  Y  Y  S  S  A  E  R  T  S  S  L  P  S  Y  S  Q  E  T  M  P  *  P  W  L  Q  S  P  S  S  F  P  L  V  S  P  L  T  K  Y  I  C  L  P  *  R  *  *  L  D  K  Q  S  N  D  E  K  S  N  L  V  P  T  Y  Y  Y  K  A  S  L  T  Q  Y  L  L  *  Q  I  N  C  I  L  A  K  K  N  M  K  H  Q  L  *  W  R  Y  Q  F  Y  C  Y  F  E  D  F  T  L  *  L  I  I  Y  V  T  P  W  T  L  L   </second_frame>
            <third_frame>   F  T  T  S  K  F  L  R  F  N  A  F  *  *  H  E  L  I  *  T  C  G  L  C  *  F  D  H  C  K  F  L  I  K  I  R  K  R  K  L  G  F  N  Q  Q  *  I  K  E  Q  M  L  E  A  A  D  Q  L  L  P  R  P  P  P  Q  L  K  S  R  R  A  Y  C  R  G  W  M  L  I  L  G  I  L  L  T  I  M  A  S  L  L  T  L  H  G :   S  M  I  H  Q  S  E  I  R  K  K  H  L  *  W  R  C  V  H  L  G  W :   S  M  Q  L  I  H  C  L  S  W  C  R  S  *  N  K  Q  P  C  F  Q  G  L  H  L  *  T  I  M  W  S  R  E  Q  K  N  L  P  N  R  L  R  K  Q  N  A  C  Y  L  E  L  E  R  R  Q  L  L  A  L  R  S  L  S  H  I  I  I  L  L  Q  K  E  P  V  V  C  L  L  T  A  K  K  Q  C  P  N  H  G  Y  N  H  L  L  L  S  H  W  F  L  L  L  L  S  I  F  V  Y  L  E  G  S  N  W  T  N  N  L  M  M  R  N  P  I  W  S  Q  L  T  T  T  R  P  H  *  L  S  I  C  C  N  K  S  T  A  F  *  L  R  K  I  *  N  T  S  Y  S  G  G  T  N  F  T  A  I  L  K  I  S  L  Y  S  L  S  Y  M  S  H  H  G  H  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86139" stop="85936"/>
                    <exon start="85377" stop="85312"/>
                    <exon start="84776" stop="84519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLQISDKNKKKEVRFQPTMNKGANVGGGGPTAAAAAAAAQKQKSLLQRVDADIGNIVDNYGFIVNAARVNDPPVRNSQEAFMMEMRASRMVHAADSLLKLVSELKQTAMFSGFASLNDHVEQRTEEFTEQAEKTECMLSRIGEEAAASLKELESHYYSSAERTSSLPSYSQETMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86221" e_stop="85936"/>
            <exon e_start="85377" e_stop="85312"/>
            <exon e_start="84776" e_stop="84304"/>
            <exon e_start="79557" e_stop="79541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.382" e_score="0.998"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86221" e_stop="85936" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85377" e_stop="85312" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="84776" e_stop="84304" e_length="473"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.382">
            <gDNA_intron_boundary i_start="84303" i_stop="79558" i_length="4746"/>
          </intron>
          <exon e_serial="4" e_score="0.824">
            <gDNA_exon_boundary e_start="79557" e_stop="79541" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86221" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86079" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86075" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86074" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84304"/>
              <exon start="79557" stop="79542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86072" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86058" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86057" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84304"/>
              <exon start="79557" stop="79541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86034" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86008" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTACTACTTCAAAATTTCTAAGATTTAATGCTTTTTGATAGCATGAATTAATTTGAACTTGTGGTCTCTGTTAATTTGACCATTGCAAATTTCTGATAAAAATAAGAAAAAGGAAGTTAGGTTTCAACCAACAATGAATAAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG : GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG : GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAG : ATTAAAAAAAAAAAGAA</gDNA_template>
            <first_frame> D  L  L  L  Q  N  F  *  D  L  M  L  F  D  S  M  N  *  F  E  L  V  V  S  V  N  L  T  I  A  N  F  *  *  K  *  E  K  G  S  *  V  S  T  N  N  E  *  R  S  K  C  W  R  R  R  T  N  C  C  R  G  R  R  R  S  S  K  A  E  E  L  T  A  E  G  G  C  *  Y  W  E  Y  C  *  Q  L  W  L  H  C  *  R  C  T   : G  Q  *  S  T  S  P  K  F  A  R  S  I  Y  D  G  D  A  C  I  *  D   : G  P  C  S  *  F  T  A  *  V  G  V  G  V  E  T  N  S  H  V  F  R  V  C  I  S  K  R  S  C  G  A  E  N  R  R  I  Y  R  T  G  *  E  N  R  M  H  V  I  *  N  W  R  G  G  S  C  *  P  *  G  A  *  V  T  L  L  F  F  C  R  K  N  Q  *  S  A  F  L  Q  P  R  N  N  A  L  T  M  A  T  I  T  F  F  F  P  I  G  F  S  S  Y  *  V  Y  L  S  T  L  K  V  V  T  G  Q  T  I  *  *  *  E  I  Q  F  G  P  N  L  L  L  Q  G  L  I  N  S  V  F  V  V  T  N  Q  L  H  S  S  *  E  K  Y  E  T  P  V  I  V  E  :  I  K  K  K  K   </first_frame>
            <second_frame>  I  Y  Y  F  K  I  S  K  I  *  C  F  L  I  A  *  I  N  L  N  L  W  S  L  L  I  *  P  L  Q  I  S  D  K  N  K  K  K  E  V  R  F  Q  P  T  M  N  K  G  A  N  V  G  G  G  G  P  T  A  A  A  A  A  A  A  A  Q  K  Q  K  S  L  L  Q  R  V  D  A  D  I  G  N  I  V  D  N  Y  G  F  I  V  N  A  A  R  :  V  N  D  P  P  V  R  N  S  Q  E  A  F  M  M  E  M  R  A  S  R  M  :  V  H  A  A  D  S  L  L  K  L  V  S  E  L  K  Q  T  A  M  F  S  G  F  A  S  L  N  D  H  V  E  Q  R  T  E  E  F  T  E  Q  A  E  K  T  E  C  M  L  S  R  I  G  E  E  A  A  A  S  L  K  E  L  E  S  H  Y  Y  S  S  A  E  R  T  S  S  L  P  S  Y  S  Q  E  T  M  P  *  P  W  L  Q  S  P  S  S  F  P  L  V  S  P  L  T  K  Y  I  C  L  P  *  R  *  *  L  D  K  Q  S  N  D  E  K  S  N  L  V  P  T  Y  Y  Y  K  A  S  L  T  Q  Y  L  L  *  Q  I  N  C  I  L  A  K  K  N  M  K  H  Q  L  *  W  R :   L  K  K  K  R  </second_frame>
            <third_frame>   F  T  T  S  K  F  L  R  F  N  A  F  *  *  H  E  L  I  *  T  C  G  L  C  *  F  D  H  C  K  F  L  I  K  I  R  K  R  K  L  G  F  N  Q  Q  *  I  K  E  Q  M  L  E  A  A  D  Q  L  L  P  R  P  P  P  Q  L  K  S  R  R  A  Y  C  R  G  W  M  L  I  L  G  I  L  L  T  I  M  A  S  L  L  T  L  H  G :   S  M  I  H  Q  S  E  I  R  K  K  H  L  *  W  R  C  V  H  L  G  W :   S  M  Q  L  I  H  C  L  S  W  C  R  S  *  N  K  Q  P  C  F  Q  G  L  H  L  *  T  I  M  W  S  R  E  Q  K  N  L  P  N  R  L  R  K  Q  N  A  C  Y  L  E  L  E  R  R  Q  L  L  A  L  R  S  L  S  H  I  I  I  L  L  Q  K  E  P  V  V  C  L  L  T  A  K  K  Q  C  P  N  H  G  Y  N  H  L  L  L  S  H  W  F  L  L  L  L  S  I  F  V  Y  L  E  G  S  N  W  T  N  N  L  M  M  R  N  P  I  W  S  Q  L  T  T  T  R  P  H  *  L  S  I  C  C  N  K  S  T  A  F  *  L  R  K  I  *  N  T  S  Y  S  G   : D  *  K  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86139" stop="85936"/>
                    <exon start="85377" stop="85312"/>
                    <exon start="84776" stop="84519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLQISDKNKKKEVRFQPTMNKGANVGGGGPTAAAAAAAAQKQKSLLQRVDADIGNIVDNYGFIVNAARVNDPPVRNSQEAFMMEMRASRMVHAADSLLKLVSELKQTAMFSGFASLNDHVEQRTEEFTEQAEKTECMLSRIGEEAAASLKELESHYYSSAERTSSLPSYSQETMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="86079" e_stop="85936"/>
            <exon e_start="85377" e_stop="85312"/>
            <exon e_start="84776" e_stop="84400"/>
            <exon e_start="81300" e_stop="81293"/>
            <exon e_start="80733" e_stop="80719"/>
            <exon e_start="79557" e_stop="79538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="0.900" acc_prob="0.382" e_score="0.933"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86079" e_stop="85936" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85377" e_stop="85312" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84776" e_stop="84400" e_length="377"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.924">
            <gDNA_intron_boundary i_start="84399" i_stop="81301" i_length="3099"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="81300" e_stop="81293" e_length="8"/>
          </exon>
          <intron i_serial="4" don_prob="0.654" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81292" i_stop="80734" i_length="559"/>
          </intron>
          <exon e_serial="5" e_score="0.933">
            <gDNA_exon_boundary e_start="80733" e_stop="80719" e_length="15"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.382">
            <gDNA_intron_boundary i_start="80718" i_stop="79558" i_length="1161"/>
          </intron>
          <exon e_serial="6" e_score="0.800">
            <gDNA_exon_boundary e_start="79557" e_stop="79538" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86079" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86058" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84541" stop="84400"/>
              <exon start="81300" stop="81293"/>
              <exon start="80733" stop="80719"/>
              <exon start="79557" stop="79538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG : GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG : GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCC : CAATATTG : AAAAAAAAAATAAAA : ATTAAAAAAAAAAAGAAAAT</gDNA_template>
            <first_frame> K  G  A  N  V  G  G  G  G  P  T  A  A  A  A  A  A  A  A  Q  K  Q  K  S  L  L  Q  R  V  D  A  D  I  G  N  I  V  D  N  Y  G  F  I  V  N  A  A  R  :  V  N  D  P  P  V  R  N  S  Q  E  A  F  M  M  E  M  R  A  S  R  M  :  V  H  A  A  D  S  L  L  K  L  V  S  E  L  K  Q  T  A  M  F  S  G  F  A  S  L  N  D  H  V  E  Q  R  T  E  E  F  T  E  Q  A  E  K  T  E  C  M  L  S  R  I  G  E  E  A  A  A  S  L  K  E  L  E  S  H  Y  Y  S  S  A  E  R  T  S  S  L  P  S  Y  S  Q  E  T  M  P  *  P  W  L  Q  S  P  S  S  F  P  L  V  S  P  L  T  K  Y  I  C  L  P  *  R  *  *  L  D  K  Q  S  N  D  E  K  S  N  L  V  P :   N  I   : E  K  K  N  K   : N  *  K  K  K  E  N </first_frame>
            <second_frame>  K  E  Q  M  L  E  A  A  D  Q  L  L  P  R  P  P  P  Q  L  K  S  R  R  A  Y  C  R  G  W  M  L  I  L  G  I  L  L  T  I  M  A  S  L  L  T  L  H  G :   S  M  I  H  Q  S  E  I  R  K  K  H  L  *  W  R  C  V  H  L  G  W :   S  M  Q  L  I  H  C  L  S  W  C  R  S  *  N  K  Q  P  C  F  Q  G  L  H  L  *  T  I  M  W  S  R  E  Q  K  N  L  P  N  R  L  R  K  Q  N  A  C  Y  L  E  L  E  R  R  Q  L  L  A  L  R  S  L  S  H  I  I  I  L  L  Q  K  E  P  V  V  C  L  L  T  A  K  K  Q  C  P  N  H  G  Y  N  H  L  L  L  S  H  W  F  L  L  L  L  S  I  F  V  Y  L  E  G  S  N  W  T  N  N  L  M  M  R  N  P  I  W  S   : P  I  L  :  K  K  K  I  K  :  I  K  K  K  K  K   </second_frame>
            <third_frame>   R  S  K  C  W  R  R  R  T  N  C  C  R  G  R  R  R  S  S  K  A  E  E  L  T  A  E  G  G  C  *  Y  W  E  Y  C  *  Q  L  W  L  H  C  *  R  C  T   : G  Q  *  S  T  S  P  K  F  A  R  S  I  Y  D  G  D  A  C  I  *  D   : G  P  C  S  *  F  T  A  *  V  G  V  G  V  E  T  N  S  H  V  F  R  V  C  I  S  K  R  S  C  G  A  E  N  R  R  I  Y  R  T  G  *  E  N  R  M  H  V  I  *  N  W  R  G  G  S  C  *  P  *  G  A  *  V  T  L  L  F  F  C  R  K  N  Q  *  S  A  F  L  Q  P  R  N  N  A  L  T  M  A  T  I  T  F  F  F  P  I  G  F  S  S  Y  *  V  Y  L  S  T  L  K  V  V  T  G  Q  T  I  *  *  *  E  I  Q  F  G  P  :  Q  Y  * :   K  K  K  *  K :   L  K  K  K  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86079" stop="85936"/>
                    <exon start="85377" stop="85312"/>
                    <exon start="84776" stop="84519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGANVGGGGPTAAAAAAAAQKQKSLLQRVDADIGNIVDNYGFIVNAARVNDPPVRNSQEAFMMEMRASRMVHAADSLLKLVSELKQTAMFSGFASLNDHVEQRTEEFTEQAEKTECMLSRIGEEAAASLKELESHYYSSAERTSSLPSYSQETMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="86079" e_stop="85936"/>
            <exon e_start="85377" e_stop="85312"/>
            <exon e_start="84776" e_stop="84439"/>
            <exon e_start="84179" e_stop="84169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.454" e_score="0.929"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86079" e_stop="85936" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85935" i_stop="85378" i_length="558"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85377" e_stop="85312" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="84776" e_stop="84439" e_length="338"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.454">
            <gDNA_intron_boundary i_start="84438" i_stop="84180" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="0.818">
            <gDNA_exon_boundary e_start="84179" e_stop="84169" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86079" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86058" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86029" stop="85936"/>
              <exon start="85377" stop="85312"/>
              <exon start="84776" stop="84439"/>
              <exon start="84179" stop="84169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGAGCAAATGTTGGAGGCGGCGGACCAACTGCTGCCGCGGCCGCCGCCGCAGCTCAAAAGCAGAAGAGCTTACTGCAGAGGGTGGATGCTGATATTGGGAATATTGTTGACAATTATGGCTTCATTGTTAACGCTGCACGG : GTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG : GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACT : CATACTGTTAG</gDNA_template>
            <first_frame> K  G  A  N  V  G  G  G  G  P  T  A  A  A  A  A  A  A  A  Q  K  Q  K  S  L  L  Q  R  V  D  A  D  I  G  N  I  V  D  N  Y  G  F  I  V  N  A  A  R  :  V  N  D  P  P  V  R  N  S  Q  E  A  F  M  M  E  M  R  A  S  R  M  :  V  H  A  A  D  S  L  L  K  L  V  S  E  L  K  Q  T  A  M  F  S  G  F  A  S  L  N  D  H  V  E  Q  R  T  E  E  F  T  E  Q  A  E  K  T  E  C  M  L  S  R  I  G  E  E  A  A  A  S  L  K  E  L  E  S  H  Y  Y  S  S  A  E  R  T  S  S  L  P  S  Y  S  Q  E  T  M  P  *  P  W  L  Q  S  P  S  S  F  P  L  V  S  P  L  T  K  Y  I  C  L  P  *  R  *  *  L :   I  L  L  </first_frame>
            <second_frame>  K  E  Q  M  L  E  A  A  D  Q  L  L  P  R  P  P  P  Q  L  K  S  R  R  A  Y  C  R  G  W  M  L  I  L  G  I  L  L  T  I  M  A  S  L  L  T  L  H  G :   S  M  I  H  Q  S  E  I  R  K  K  H  L  *  W  R  C  V  H  L  G  W :   S  M  Q  L  I  H  C  L  S  W  C  R  S  *  N  K  Q  P  C  F  Q  G  L  H  L  *  T  I  M  W  S  R  E  Q  K  N  L  P  N  R  L  R  K  Q  N  A  C  Y  L  E  L  E  R  R  Q  L  L  A  L  R  S  L  S  H  I  I  I  L  L  Q  K  E  P  V  V  C  L  L  T  A  K  K  Q  C  P  N  H  G  Y  N  H  L  L  L  S  H  W  F  L  L  L  L  S  I  F  V  Y  L  E  G  S  N   : S  Y  C  * </second_frame>
            <third_frame>   R  S  K  C  W  R  R  R  T  N  C  C  R  G  R  R  R  S  S  K  A  E  E  L  T  A  E  G  G  C  *  Y  W  E  Y  C  *  Q  L  W  L  H  C  *  R  C  T   : G  Q  *  S  T  S  P  K  F  A  R  S  I  Y  D  G  D  A  C  I  *  D   : G  P  C  S  *  F  T  A  *  V  G  V  G  V  E  T  N  S  H  V  F  R  V  C  I  S  K  R  S  C  G  A  E  N  R  R  I  Y  R  T  G  *  E  N  R  M  H  V  I  *  N  W  R  G  G  S  C  *  P  *  G  A  *  V  T  L  L  F  F  C  R  K  N  Q  *  S  A  F  L  Q  P  R  N  N  A  L  T  M  A  T  I  T  F  F  F  P  I  G  F  S  S  Y  *  V  Y  L  S  T  L  K  V  V  T  :  H  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86079" stop="85936"/>
                    <exon start="85377" stop="85312"/>
                    <exon start="84776" stop="84519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGANVGGGGPTAAAAAAAAQKQKSLLQRVDADIGNIVDNYGFIVNAARVNDPPVRNSQEAFMMEMRASRMVHAADSLLKLVSELKQTAMFSGFASLNDHVEQRTEEFTEQAEKTECMLSRIGEEAAASLKELESHYYSSAERTSSLPSYSQETMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="85381" e_stop="85312"/>
            <exon e_start="84776" e_stop="84285"/>
            <exon e_start="79557" e_stop="79539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="0.971"/>
          <exon-intron don_prob="0.000" acc_prob="0.382" e_score="0.998"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="85381" e_stop="85312" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85311" i_stop="84777" i_length="535"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="84776" e_stop="84285" e_length="492"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.382">
            <gDNA_intron_boundary i_start="84284" i_stop="79558" i_length="4727"/>
          </intron>
          <exon e_serial="3" e_score="0.842">
            <gDNA_exon_boundary e_start="79557" e_stop="79539" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85381" stop="85312"/>
              <exon start="84776" stop="84285"/>
              <exon start="79557" stop="79539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGGTCAATGATCCACCAGTCCGAAATTCGCAAGAAGCATTTATGATGGAGATGCGTGCATCTAGGATG : GTCCATGCAGCTGATTCACTGCTTAAGTTGGTGTCGGAGTTGAAACAAACAGCCATGTTTTCAGGGTTTGCATCTCTAAACGATCATGTGGAGCAGAGAACAGAAGAATTTACCGAACAGGCTGAGAAAACAGAATGCATGTTATCTAGAATTGGAGAGGAGGCAGCTGCTAGCCTTAAGGAGCTTGAGTCACATTATTATTCTTCTGCAGAAAGAACCAGTAGTCTGCCTTCTTACAGCCAAGAAACAATGCCCTAACCATGGCTACAATCACCTTCTTCTTTCCCATTGGTTTCTCCTCTTACTAAGTATATTTGTCTACCTTGAAGGTAGTAACTGGACAAACAATCTAATGATGAGAAATCCAATTTGGTCCCAACTTACTACTACAAGGCCTCATTAACTCAGTATTTGTTGTAACAAATCAACTGCATTCTAGCTAAGAAAAATATGAAACACCAGTTATAGTGGAGGTACCAATTTTACTGCTAT : ATTAAAAAAAAAAAGAAAA</gDNA_template>
            <first_frame> I  G  Q  *  S  T  S  P  K  F  A  R  S  I  Y  D  G  D  A  C  I  *  D   : G  P  C  S  *  F  T  A  *  V  G  V  G  V  E  T  N  S  H  V  F  R  V  C  I  S  K  R  S  C  G  A  E  N  R  R  I  Y  R  T  G  *  E  N  R  M  H  V  I  *  N  W  R  G  G  S  C  *  P  *  G  A  *  V  T  L  L  F  F  C  R  K  N  Q  *  S  A  F  L  Q  P  R  N  N  A  L  T  M  A  T  I  T  F  F  F  P  I  G  F  S  S  Y  *  V  Y  L  S  T  L  K  V  V  T  G  Q  T  I  *  *  *  E  I  Q  F  G  P  N  L  L  L  Q  G  L  I  N  S  V  F  V  V  T  N  Q  L  H  S  S  *  E  K  Y  E  T  P  V  I  V  E  V  P  I  L  L  L   : Y  *  K  K  K  E   </first_frame>
            <second_frame>  *  V  N  D  P  P  V  R  N  S  Q  E  A  F  M  M  E  M  R  A  S  R  M  :  V  H  A  A  D  S  L  L  K  L  V  S  E  L  K  Q  T  A  M  F  S  G  F  A  S  L  N  D  H  V  E  Q  R  T  E  E  F  T  E  Q  A  E  K  T  E  C  M  L  S  R  I  G  E  E  A  A  A  S  L  K  E  L  E  S  H  Y  Y  S  S  A  E  R  T  S  S  L  P  S  Y  S  Q  E  T  M  P  *  P  W  L  Q  S  P  S  S  F  P  L  V  S  P  L  T  K  Y  I  C  L  P  *  R  *  *  L  D  K  Q  S  N  D  E  K  S  N  L  V  P  T  Y  Y  Y  K  A  S  L  T  Q  Y  L  L  *  Q  I  N  C  I  L  A  K  K  N  M  K  H  Q  L  *  W  R  Y  Q  F  Y  C  Y  :  I  K  K  K  K  K  </second_frame>
            <third_frame>   R  S  M  I  H  Q  S  E  I  R  K  K  H  L  *  W  R  C  V  H  L  G  W :   S  M  Q  L  I  H  C  L  S  W  C  R  S  *  N  K  Q  P  C  F  Q  G  L  H  L  *  T  I  M  W  S  R  E  Q  K  N  L  P  N  R  L  R  K  Q  N  A  C  Y  L  E  L  E  R  R  Q  L  L  A  L  R  S  L  S  H  I  I  I  L  L  Q  K  E  P  V  V  C  L  L  T  A  K  K  Q  C  P  N  H  G  Y  N  H  L  L  L  S  H  W  F  L  L  L  L  S  I  F  V  Y  L  E  G  S  N  W  T  N  N  L  M  M  R  N  P  I  W  S  Q  L  T  T  T  R  P  H  *  L  S  I  C  C  N  K  S  T  A  F  *  L  R  K  I  *  N  T  S  Y  S  G  G  T  N  F  T  A  I :   L  K  K  K  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85377" stop="85312"/>
                    <exon start="84776" stop="84519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNDPPVRNSQEAFMMEMRASRMVHAADSLLKLVSELKQTAMFSGFASLNDHVEQRTEEFTEQAEKTECMLSRIGEEAAASLKELESHYYSSAERTSSLPSYSQETMP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84697" stop="84374"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIMWSREQKNLPNRLRKQNACYLELERRQLLALRSLSHIIILLQKEPVVCLLTAKKQCPNHGYNHLLLSHWFLLLLSIFVYLEGSNWTNNLMMRNPIWSQLTTTRPH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80896" PGL_stop="84047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80896" e_stop="81316"/>
            <exon e_start="82857" e_stop="83148"/>
            <exon e_start="83545" e_stop="83610"/>
            <exon e_start="83769" e_stop="84047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.566" e_score="0.955"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.795" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="80896" e_stop="81316" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.566">
            <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82857" e_stop="83148" e_length="292"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83545" e_stop="83610" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.795">
            <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83769" e_stop="84047" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80896" stop="81316"/>
              <exon start="82857" stop="83093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81213" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81266" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81266" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81275" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81282" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81282" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81283" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="83880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82858" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82956" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83858" stop="84047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274137" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTCTTGACATCTACATTTTTTTGAGGTGACCCCTTTTCACCATTACTTGATTTTGGCAAAAAGGAACAATCTTTATACTTCAAGATTCATGTTTGATATAATTCTTTGTTACTTATTGCATAATATTTTATTGGGTATTTTCATACTTTGATTGATGCACATTTATCATGTTTTGATTGAACTTAATATATTCAGTATTAAGATTTTATGAAATATATGTATTAAAGATGTAGTCTTTGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGG : AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT : TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG : GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAGGTTGCTATGAAAA</gDNA_template>
            <first_frame> K  F  L  T  S  T  F  F  *  G  D  P  F  S  P  L  L  D  F  G  K  K  E  Q  S  L  Y  F  K  I  H  V  *  Y  N  S  L  L  L  I  A  *  Y  F  I  G  Y  F  H  T  L  I  D  A  H  L  S  C  F  D  *  T  *  Y  I  Q  Y  *  D  F  M  K  Y  M  Y  *  R  C  S  L  C  I  N  *  L  Y  L  V  P  K  C  G  I  C  I  C  T  V  Y  L  G  *  G  F  M  E  S  I  V  D  S  I  Y  L  T  K  F  R  V  L  L  L  R  G  T  G  S  R  V  F  G  I  P  I  L  L  E  K  C  R   : E  R  M  L  L  L  L  L  P  R  L  L  L  H  H  L  E  S  P  W  T  S  *  L  L  C  S  W  C  *  G  S  L  R  L  M  E  A  S  L  G  D  Y  M  K  V  Q  R  *  L  R  S  M  L  H  S  F  V  C  *  Q  R  T  V  T  S  Q  I  M  S  N  W  S  K  R  S  V  L  I  T  M  S  V  *  L  R  F  R  M  Q  K  L  L  A  N  G  L  V :   C  V  R  L  I  L  K  G  K  Q  G  R  W  S  A  V  A  V  L  L  *  R :   I  T  E  K  R  L  R  V  C  I  L  S  K  S  T  *  S  P  I  K  F  A  V  H  M  K  E  D  L  F  P  P  Y  Q  N  D  N  P  E  D  I  S  S  A  D  D  F  Q  F  L  R  L  G  *  N  Y  *  T  *  H  R  K  T  L  S  V  V  L  L  L  C  *  L  Q  K  E  L  N  T  Q  L  E  I  A  G  F  I  L  G  C  Y  E   </first_frame>
            <second_frame>  N  S  *  H  L  H  F  F  E  V  T  P  F  H  H  Y  L  I  L  A  K  R  N  N  L  Y  T  S  R  F  M  F  D  I  I  L  C  Y  L  L  H  N  I  L  L  G  I  F  I  L  *  L  M  H  I  Y  H  V  L  I  E  L  N  I  F  S  I  K  I  L  *  N  I  C  I  K  D  V  V  F  V  *  I  S  C  I  W  Y  P  N  V  G  S  A  Y  A  R  Y  I  W  D  E  G  L  W  S  L  L  L  I  L  F  T  *  L  N  S  V  F  Y  F  *  E  E  Q  V  A  E  F  L  V  Y  Q  Y  C  W  K  N  V  G  :  R  G  C  C  C  C  C  C  R  G  S  C  S  I  T  W  R  A  H  G  H  H  D  C  F  A  A  G  A  E  E  V  *  G  S  W  R  P  L  S  G  T  T  *  R  C  K  G  D  *  E  A  C  C  T  A  L  C  V  S  R  G  L  *  P  A  R  L  C  Q  I  G  Q  S  A  L  C  *  S  Q  C  Q  F  D  Y  G  S  E  C  K  N  S  W  R  M  G  W   : F  V  *  D  *  F  *  R  E  S  K  E  G  G  R  L  W  L  C  C  C  E   : G  L  R  R  R  D  *  G  S  A  Y  C  P  R  V  R  E  V  P  L  N  S  R  C  I  *  R  K  T  S  S  L  P  T  K  M  I  I  Q  K  T  L  V  L  Q  M  I  F  S  F  *  D  *  V  E  T  I  K  P  S  I  G  K  L  S  L  L  F  F  Y  F  V  D  F  K  R  N  *  I  L  N  W  K  L  Q  V  L  F  *  V  A  M  K  </second_frame>
            <third_frame>   I  L  D  I  Y  I  F  L  R  *  P  L  F  T  I  T  *  F  W  Q  K  G  T  I  F  I  L  Q  D  S  C  L  I  *  F  F  V  T  Y  C  I  I  F  Y  W  V  F  S  Y  F  D  *  C  T  F  I  M  F  *  L  N  L  I  Y  S  V  L  R  F  Y  E  I  Y  V  L  K  M  *  S  L  Y  K  L  V  V  F  G  T  Q  M  W  D  L  H  M  H  G  I  F  G  M  R  V  Y  G  V  Y  C  *  F  Y  L  P  N  *  I  P  C  F  T  F  E  R  N  R  *  Q  S  F  W  Y  T  N  I  A  G  K  M  S  G :   E  D  V  A  V  A  V  A  E  A  P  A  P  S  L  G  E  P  M  D  I  M  T  A  L  Q  L  V  L  R  K  S  K  A  H  G  G  L  S  R  G  L  H  E  G  A  K  V  I  E  K  H  A  A  Q  L  C  V  L  A  E  D  C  D  Q  P  D  Y  V  K  L  V  K  A  L  C  A  D  H  N  V  S  L  I  T  V  P  N  A  K  T  L  G  E  W  A  G  :  L  C  K  I  D  S  E  G  K  A  R  K  V  V  G  C  G  C  V  V  V  K  :  D  Y  G  E  E  T  E  G  L  H  I  V  Q  E  Y  V  K  S  H  *  I  R  G  A  Y  E  G  R  P  L  P  S  L  P  K  *  *  S  R  R  H  *  F  C  R  *  F  S  V  F  K  I  R  L  K  L  L  N  L  A  S  E  N  S  L  C  C  S  F  T  L  L  T  S  K  G  I  K  Y  S  I  G  N  C  R  F  Y  F  R  L  L  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81276" stop="81316"/>
                    <exon start="82857" stop="83148"/>
                    <exon start="83545" stop="83610"/>
                    <exon start="83769" stop="83828"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSFWYTNIAGKMSGEDVAVAVAEAPAPSLGEPMDIMTALQLVLRKSKAHGGLSRGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCADHNVSLITVPNAKTLGEWAGLCKIDSEGKARKVVGCGCVVVKDYGEETEGLHIVQEYVKSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80898" e_stop="80923"/>
            <exon e_start="81272" e_stop="81316"/>
            <exon e_start="82857" e_stop="83148"/>
            <exon e_start="83545" e_stop="83610"/>
            <exon e_start="83769" e_stop="84047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.000" e_score="0.962"/>
          <exon-intron don_prob="0.965" acc_prob="0.566" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.795" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="80898" e_stop="80923" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80924" i_stop="81271" i_length="348"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81272" e_stop="81316" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.566">
            <gDNA_intron_boundary i_start="81317" i_stop="82856" i_length="1540"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82857" e_stop="83148" e_length="292"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83149" i_stop="83544" i_length="396"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83545" e_stop="83610" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.795">
            <gDNA_intron_boundary i_start="83611" i_stop="83768" i_length="158"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83769" e_stop="84047" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80898" stop="80923"/>
              <exon start="81272" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="83901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80898" stop="80923"/>
              <exon start="81272" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81275" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81282" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81282" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81283" stop="81316"/>
              <exon start="82857" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="83880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82858" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82956" stop="83148"/>
              <exon start="83545" stop="83610"/>
              <exon start="83769" stop="84034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83858" stop="84047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274137" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTTGACATCTACATTTTTTTGAG : GTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGG : AGAGGATGTTGCTGTTGCTGTTGCCGAGGCTCCTGCTCCATCACTTGGAGAGCCCATGGACATCATGACTGCTTTGCAGCTGGTGCTGAGGAAGTCTAAGGCTCATGGAGGCCTCTCTCGGGGACTACATGAAGGTGCAAAGGTGATTGAGAAGCATGCTGCACAGCTTTGTGTGTTAGCAGAGGACTGTGACCAGCCAGATTATGTCAAATTGGTCAAAGCGCTCTGTGCTGATCACAATGTCAGTTTGATTACGGTTCCGAATGCAAAAACTCTTGGCGAATGGGCTGGT : TTGTGTAAGATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGCTGTGGCTGTGTTGTTGTGAAG : GATTACGGAGAAGAGACTGAGGGTCTGCATATTGTCCAAGAGTACGTGAAGTCCCATTAAATTCGCGGTGCATATGAAGGAAGACCTCTTCCCTCCCTACCAAAATGATAATCCAGAAGACATTAGTTCTGCAGATGATTTTCAGTTTTTAAGATTAGGTTGAAACTATTAAACCTAGCATCGGAAAACTCTCTCTGTTGTTCTTTTACTTTGTTGACTTCAAAAGGAATTAAATACTCAATTGGAAATTGCAGGTTTTATTTTAGGTTGCTATGAAAA</gDNA_template>
            <first_frame> I  L  D  I  Y  I  F  L  R :   *  Q  S  F  W  Y  T  N  I  A  G  K  M  S  G :   E  D  V  A  V  A  V  A  E  A  P  A  P  S  L  G  E  P  M  D  I  M  T  A  L  Q  L  V  L  R  K  S  K  A  H  G  G  L  S  R  G  L  H  E  G  A  K  V  I  E  K  H  A  A  Q  L  C  V  L  A  E  D  C  D  Q  P  D  Y  V  K  L  V  K  A  L  C  A  D  H  N  V  S  L  I  T  V  P  N  A  K  T  L  G  E  W  A  G  :  L  C  K  I  D  S  E  G  K  A  R  K  V  V  G  C  G  C  V  V  V  K  :  D  Y  G  E  E  T  E  G  L  H  I  V  Q  E  Y  V  K  S  H  *  I  R  G  A  Y  E  G  R  P  L  P  S  L  P  K  *  *  S  R  R  H  *  F  C  R  *  F  S  V  F  K  I  R  L  K  L  L  N  L  A  S  E  N  S  L  C  C  S  F  T  L  L  T  S  K  G  I  K  Y  S  I  G  N  C  R  F  Y  F  R  L  L  *  K </first_frame>
            <second_frame>  F  L  T  S  T  F  F  *   : G  S  R  V  F  G  I  P  I  L  L  E  K  C  R   : E  R  M  L  L  L  L  L  P  R  L  L  L  H  H  L  E  S  P  W  T  S  *  L  L  C  S  W  C  *  G  S  L  R  L  M  E  A  S  L  G  D  Y  M  K  V  Q  R  *  L  R  S  M  L  H  S  F  V  C  *  Q  R  T  V  T  S  Q  I  M  S  N  W  S  K  R  S  V  L  I  T  M  S  V  *  L  R  F  R  M  Q  K  L  L  A  N  G  L  V :   C  V  R  L  I  L  K  G  K  Q  G  R  W  S  A  V  A  V  L  L  *  R :   I  T  E  K  R  L  R  V  C  I  L  S  K  S  T  *  S  P  I  K  F  A  V  H  M  K  E  D  L  F  P  P  Y  Q  N  D  N  P  E  D  I  S  S  A  D  D  F  Q  F  L  R  L  G  *  N  Y  *  T  *  H  R  K  T  L  S  V  V  L  L  L  C  *  L  Q  K  E  L  N  T  Q  L  E  I  A  G  F  I  L  G  C  Y  E   </second_frame>
            <third_frame>   S  *  H  L  H  F  F  E  :  V  A  E  F  L  V  Y  Q  Y  C  W  K  N  V  G  :  R  G  C  C  C  C  C  C  R  G  S  C  S  I  T  W  R  A  H  G  H  H  D  C  F  A  A  G  A  E  E  V  *  G  S  W  R  P  L  S  G  T  T  *  R  C  K  G  D  *  E  A  C  C  T  A  L  C  V  S  R  G  L  *  P  A  R  L  C  Q  I  G  Q  S  A  L  C  *  S  Q  C  Q  F  D  Y  G  S  E  C  K  N  S  W  R  M  G  W   : F  V  *  D  *  F  *  R  E  S  K  E  G  G  R  L  W  L  C  C  C  E   : G  L  R  R  R  D  *  G  S  A  Y  C  P  R  V  R  E  V  P  L  N  S  R  C  I  *  R  K  T  S  S  L  P  T  K  M  I  I  Q  K  T  L  V  L  Q  M  I  F  S  F  *  D  *  V  E  T  I  K  P  S  I  G  K  L  S  L  L  F  F  Y  F  V  D  F  K  R  N  *  I  L  N  W  K  L  Q  V  L  F  *  V  A  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81276" stop="81316"/>
                    <exon start="82857" stop="83148"/>
                    <exon start="83545" stop="83610"/>
                    <exon start="83769" stop="83828"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSFWYTNIAGKMSGEDVAVAVAEAPAPSLGEPMDIMTALQLVLRKSKAHGGLSRGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCADHNVSLITVPNAKTLGEWAGLCKIDSEGKARKVVGCGCVVVKDYGEETEGLHIVQEYVKSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81128" e_stop="81741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="81128" e_stop="81741" e_length="614"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81128" stop="81741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81128" stop="81428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGTCTTTGTATAAATTAGTTGTATTTGGTACCCAAATGTGGGATCTGCATATGCACGGTATATTTGGGATGAGGGTTTATGGAGTCTATTGTTGATTCTATTTACCTAACTAAATTCCGTGTTTTACTTTTGAGAGGAACAGGTAGCAGAGTTTTTGGTATACCAATATTGCTGGAAAAATGTCGGGGTAAGTAGAATTCAGTTAATTTTATTGTCAAATTCAGTTTGTTTACTTGACTGTAAGTGTTGCTGTCGATGTCGTTTTCGGTTGTAATGAGCTGGAGACCAGTATCTTGATCAGCTTTACCAGTAGTTTTTGCAACTTGGTGTGTGATTATGTTTGTGTGTGTAGTAGTCTGTTGTTATTTGAGTGCTATTTGAACTATTCATTTACAATTACATTCCTATGTTTGCGAGGAGCCATTAGTTTGGTTATAGATTTGTATGCCAATGTAGGGAATAAGTGTGCTGTTTAGTGAATCGCTTCTTTCAGGGAGTTCGTTACAAATTATTGAGTATTAGAACTATCTGGGTCTAAGTATAGTGGAATCGATATATTGGGATAGTTGATTGATTGTAGTACACAAGACTTTGTACGATCGTGTCATGTTT</gDNA_template>
            <first_frame> V  V  F  V  *  I  S  C  I  W  Y  P  N  V  G  S  A  Y  A  R  Y  I  W  D  E  G  L  W  S  L  L  L  I  L  F  T  *  L  N  S  V  F  Y  F  *  E  E  Q  V  A  E  F  L  V  Y  Q  Y  C  W  K  N  V  G  V  S  R  I  Q  L  I  L  L  S  N  S  V  C  L  L  D  C  K  C  C  C  R  C  R  F  R  L  *  *  A  G  D  Q  Y  L  D  Q  L  Y  Q  *  F  L  Q  L  G  V  *  L  C  L  C  V  *  *  S  V  V  I  *  V  L  F  E  L  F  I  Y  N  Y  I  P  M  F  A  R  S  H  *  F  G  Y  R  F  V  C  Q  C  R  E  *  V  C  C  L  V  N  R  F  F  Q  G  V  R  Y  K  L  L  S  I  R  T  I  W  V  *  V  *  W  N  R  Y  I  G  I  V  D  *  L  *  Y  T  R  L  C  T  I  V  S  C   </first_frame>
            <second_frame>  *  S  L  Y  K  L  V  V  F  G  T  Q  M  W  D  L  H  M  H  G  I  F  G  M  R  V  Y  G  V  Y  C  *  F  Y  L  P  N  *  I  P  C  F  T  F  E  R  N  R  *  Q  S  F  W  Y  T  N  I  A  G  K  M  S  G  *  V  E  F  S  *  F  Y  C  Q  I  Q  F  V  Y  L  T  V  S  V  A  V  D  V  V  F  G  C  N  E  L  E  T  S  I  L  I  S  F  T  S  S  F  C  N  L  V  C  D  Y  V  C  V  C  S  S  L  L  L  F  E  C  Y  L  N  Y  S  F  T  I  T  F  L  C  L  R  G  A  I  S  L  V  I  D  L  Y  A  N  V  G  N  K  C  A  V  *  *  I  A  S  F  R  E  F  V  T  N  Y  *  V  L  E  L  S  G  S  K  Y  S  G  I  D  I  L  G  *  L  I  D  C  S  T  Q  D  F  V  R  S  C  H  V  </second_frame>
            <third_frame>   S  L  C  I  N  *  L  Y  L  V  P  K  C  G  I  C  I  C  T  V  Y  L  G  *  G  F  M  E  S  I  V  D  S  I  Y  L  T  K  F  R  V  L  L  L  R  G  T  G  S  R  V  F  G  I  P  I  L  L  E  K  C  R  G  K  *  N  S  V  N  F  I  V  K  F  S  L  F  T  *  L  *  V  L  L  S  M  S  F  S  V  V  M  S  W  R  P  V  S  *  S  A  L  P  V  V  F  A  T  W  C  V  I  M  F  V  C  V  V  V  C  C  Y  L  S  A  I  *  T  I  H  L  Q  L  H  S  Y  V  C  E  E  P  L  V  W  L  *  I  C  M  P  M  *  G  I  S  V  L  F  S  E  S  L  L  S  G  S  S  L  Q  I  I  E  Y  *  N  Y  L  G  L  S  I  V  E  S  I  Y  W  D  S  *  L  I  V  V  H  K  T  L  Y  D  R  V  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81336" stop="81605"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYCQIQFVYLTVSVAVDVVFGCNELETSILISFTSSFCNLVCDYVCVCSSLLLFECYLNYSFTITFLCLRGAISLVIDLYANVGNKCAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="94551" PGL_stop="86535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94551" e_stop="94373"/>
            <exon e_start="93147" e_stop="93089"/>
            <exon e_start="92919" e_stop="92720"/>
            <exon e_start="90640" e_stop="90551"/>
            <exon e_start="88300" e_stop="88157"/>
            <exon e_start="87432" e_stop="86535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="0.955"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="94551" e_stop="94373" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="94372" i_stop="93148" i_length="1225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93147" e_stop="93089" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93088" i_stop="92920" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92919" e_stop="92720" e_length="200"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="92719" i_stop="90641" i_length="2079"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90640" e_stop="90551" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="90550" i_stop="88301" i_length="2250"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88300" e_stop="88157" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88156" i_stop="87433" i_length="724"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="87432" e_stop="86535" e_length="898"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94551" stop="94373"/>
              <exon start="93147" stop="93089"/>
              <exon start="92919" stop="92720"/>
              <exon start="90640" stop="90551"/>
              <exon start="88300" stop="88166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93128" stop="93089"/>
              <exon start="92919" stop="92720"/>
              <exon start="90640" stop="90551"/>
              <exon start="88300" stop="88157"/>
              <exon start="87432" stop="87010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88198" stop="88157"/>
              <exon start="87432" stop="86858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591381" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87424" stop="86718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87424" stop="86718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87423" stop="86919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87284" stop="86560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87204" stop="86535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86982" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATTTCCCCGCAAACATTGAACTCAAACCCTAACCCTAATCGTGAAAATTCATCTAATAAATTGCAGTTCACCGGTTGACGAGGAGATGGAAACTCACATGTCTCATCATCATCAGTATGAAAGACGACCCATATACAAGTCCAAAGCTCCTGCTTCCAAATGGTTTAAGGAATG : GGTCCCACAAGATGTTGTAGCAACTGGTGGGAAGTGCTACGTCTTAAAGTGGGTGAATG : AGGCCACATTAAAAGCTCTGAGGGAGAAGCCAAAAGAGGCAGGAGTACCTGTGTCAGAACCAGAGCCAACTACTGAAGTTCTTTTTCTTTGTAGCTATGAAGGTTGTGGAAAGACATTTATTGATGCTGGGGCCTTGAGGAAGCATTCTCACATCCACGGGGAGAGGCAGTATGTATGCCACTATGAGGGTTGTGGAAAG : AAATTCTTGGATAGTTCCAAGCTAAAACGACACTTTCTTATTCACACTGGAGAAAGAGACTATGTGTGTCCACATGAAGGCTGTGGTAAG : GCATTCTCACTGGATTTTAACTTAAGATCACACATGAAAACACACTCCCAGGAGAACTATCATATTTGCCCGTATCCAGAATGTGGAAAGCGATATGCACATGAGTACAAGCTTAAAAATCATATTTCATCTACTCACCAGAAG : AACAACACACCAGATGCACATGCACATCCACATCCACATGCTCATGCACCAAAGTATACCCCGCCTGTGGAGAAGCCAGTGAAGACTCCGAAATCTTCTTCAGCAGCTTATGGCTCATCATCATCTGACCGTCCTTACAGCTGTCCATACGAAGGTTGTGACAAATCTTACATCCATGAGTACAAGCTGAATCTTCATTTGAGGAACATGCACCCTGGTCATTTCCCAGAGGAGAACGCGAGAAATGTTCAATCCACTGCTGACAATGAGATAGATGAAGGCAGTGATCAGGACGCATATGCTGCAAGACGTGGAAACGGAAGAAGTCAGAAACAGAGCAGACCAAAACCAAGCTTAAAGCAGCCGCCTTTGAAAGTTGCACGCAAAAGCTCATCTAGTGCTGCTCAAGCCAATCTAATTATATCGAAGAAACCTTGGCCGGTTAAAGAAGAGAACTTCAATGAAGAAGATAGTGAAGAAACAGAGGAGGAGCGGGATGATGTTGGCGATGGATGGAGGTATGGTGAAAACGATGACGACGATGAAGAGACTGAAGAAGATGACTAGGCTTATATGTCATACATACTCATAGGTAGTTAAGTAGTACACTATGTTTTGGGATATAAATGGTTGTCATTGTCTAGAAAATGGGATTGGTCCTTGCTTGTTAATGCCTTTTTGTGTTTTATGAAAAGCATGAGGCTTTAGCTGTTTCCTAAACCCCACCCTCTCACCTAGCTCCATGGAACATGGAGATTTGCAGAACACTCTGAGCTTCTTATTCATTTTTATTCCATAAAAACAAACTGACATCTCTTATTACTATTATTATTATGTATAAATTTGACCATTTCGAGGACTTGAGATCCATAATTTGTTATATATAATTCAAACAATT</gDNA_template>
            <first_frame> N  K  F  P  R  K  H  *  T  Q  T  L  T  L  I  V  K  I  H  L  I  N  C  S  S  P  V  D  E  E  M  E  T  H  M  S  H  H  H  Q  Y  E  R  R  P  I  Y  K  S  K  A  P  A  S  K  W  F  K  E  W :   V  P  Q  D  V  V  A  T  G  G  K  C  Y  V  L  K  W  V  N   : E  A  T  L  K  A  L  R  E  K  P  K  E  A  G  V  P  V  S  E  P  E  P  T  T  E  V  L  F  L  C  S  Y  E  G  C  G  K  T  F  I  D  A  G  A  L  R  K  H  S  H  I  H  G  E  R  Q  Y  V  C  H  Y  E  G  C  G  K  :  K  F  L  D  S  S  K  L  K  R  H  F  L  I  H  T  G  E  R  D  Y  V  C  P  H  E  G  C  G  K  :  A  F  S  L  D  F  N  L  R  S  H  M  K  T  H  S  Q  E  N  Y  H  I  C  P  Y  P  E  C  G  K  R  Y  A  H  E  Y  K  L  K  N  H  I  S  S  T  H  Q  K  :  N  N  T  P  D  A  H  A  H  P  H  P  H  A  H  A  P  K  Y  T  P  P  V  E  K  P  V  K  T  P  K  S  S  S  A  A  Y  G  S  S  S  S  D  R  P  Y  S  C  P  Y  E  G  C  D  K  S  Y  I  H  E  Y  K  L  N  L  H  L  R  N  M  H  P  G  H  F  P  E  E  N  A  R  N  V  Q  S  T  A  D  N  E  I  D  E  G  S  D  Q  D  A  Y  A  A  R  R  G  N  G  R  S  Q  K  Q  S  R  P  K  P  S  L  K  Q  P  P  L  K  V  A  R  K  S  S  S  S  A  A  Q  A  N  L  I  I  S  K  K  P  W  P  V  K  E  E  N  F  N  E  E  D  S  E  E  T  E  E  E  R  D  D  V  G  D  G  W  R  Y  G  E  N  D  D  D  D  E  E  T  E  E  D  D  *  A  Y  M  S  Y  I  L  I  G  S  *  V  V  H  Y  V  L  G  Y  K  W  L  S  L  S  R  K  W  D  W  S  L  L  V  N  A  F  L  C  F  M  K  S  M  R  L  *  L  F  P  K  P  H  P  L  T  *  L  H  G  T  W  R  F  A  E  H  S  E  L  L  I  H  F  Y  S  I  K  T  N  *  H  L  L  L  L  L  L  L  C  I  N  L  T  I  S  R  T  *  D  P  *  F  V  I  Y  N  S  N  N  </first_frame>
            <second_frame>  I  N  F  P  A  N  I  E  L  K  P  *  P  *  S  *  K  F  I  *  *  I  A  V  H  R  L  T  R  R  W  K  L  T  C  L  I  I  I  S  M  K  D  D  P  Y  T  S  P  K  L  L  L  P  N  G  L  R  N   : G  S  H  K  M  L  *  Q  L  V  G  S  A  T  S  *  S  G  *  M  :  R  P  H  *  K  L  *  G  R  S  Q  K  R  Q  E  Y  L  C  Q  N  Q  S  Q  L  L  K  F  F  F  F  V  A  M  K  V  V  E  R  H  L  L  M  L  G  P  *  G  S  I  L  T  S  T  G  R  G  S  M  Y  A  T  M  R  V  V  E  R :   N  S  W  I  V  P  S  *  N  D  T  F  L  F  T  L  E  K  E  T  M  C  V  H  M  K  A  V  V  R :   H  S  H  W  I  L  T  *  D  H  T  *  K  H  T  P  R  R  T  I  I  F  A  R  I  Q  N  V  E  S  D  M  H  M  S  T  S  L  K  I  I  F  H  L  L  T  R  R :   T  T  H  Q  M  H  M  H  I  H  I  H  M  L  M  H  Q  S  I  P  R  L  W  R  S  Q  *  R  L  R  N  L  L  Q  Q  L  M  A  H  H  H  L  T  V  L  T  A  V  H  T  K  V  V  T  N  L  T  S  M  S  T  S  *  I  F  I  *  G  T  C  T  L  V  I  S  Q  R  R  T  R  E  M  F  N  P  L  L  T  M  R  *  M  K  A  V  I  R  T  H  M  L  Q  D  V  E  T  E  E  V  R  N  R  A  D  Q  N  Q  A  *  S  S  R  L  *  K  L  H  A  K  A  H  L  V  L  L  K  P  I  *  L  Y  R  R  N  L  G  R  L  K  K  R  T  S  M  K  K  I  V  K  K  Q  R  R  S  G  M  M  L  A  M  D  G  G  M  V  K  T  M  T  T  M  K  R  L  K  K  M  T  R  L  I  C  H  T  Y  S  *  V  V  K  *  Y  T  M  F  W  D  I  N  G  C  H  C  L  E  N  G  I  G  P  C  L  L  M  P  F  C  V  L  *  K  A  *  G  F  S  C  F  L  N  P  T  L  S  P  S  S  M  E  H  G  D  L  Q  N  T  L  S  F  L  F  I  F  I  P  *  K  Q  T  D  I  S  Y  Y  Y  Y  Y  Y  V  *  I  *  P  F  R  G  L  E  I  H  N  L  L  Y  I  I  Q  T  I </second_frame>
            <third_frame>   *  I  S  P  Q  T  L  N  S  N  P  N  P  N  R  E  N  S  S  N  K  L  Q  F  T  G  *  R  G  D  G  N  S  H  V  S  S  S  S  V  *  K  T  T  H  I  Q  V  Q  S  S  C  F  Q  M  V  *  G  M  :  G  P  T  R  C  C  S  N  W  W  E  V  L  R  L  K  V  G  E  * :   G  H  I  K  S  S  E  G  E  A  K  R  G  R  S  T  C  V  R  T  R  A  N  Y  *  S  S  F  S  L  *  L  *  R  L  W  K  D  I  Y  *  C  W  G  L  E  E  A  F  S  H  P  R  G  E  A  V  C  M  P  L  *  G  L  W  K   : E  I  L  G  *  F  Q  A  K  T  T  L  S  Y  S  H  W  R  K  R  L  C  V  S  T  *  R  L  W  *   : G  I  L  T  G  F  *  L  K  I  T  H  E  N  T  L  P  G  E  L  S  Y  L  P  V  S  R  M  W  K  A  I  C  T  *  V  Q  A  *  K  S  Y  F  I  Y  S  P  E   : E  Q  H  T  R  C  T  C  T  S  T  S  T  C  S  C  T  K  V  Y  P  A  C  G  E  A  S  E  D  S  E  I  F  F  S  S  L  W  L  I  I  I  *  P  S  L  Q  L  S  I  R  R  L  *  Q  I  L  H  P  *  V  Q  A  E  S  S  F  E  E  H  A  P  W  S  F  P  R  G  E  R  E  K  C  S  I  H  C  *  Q  *  D  R  *  R  Q  *  S  G  R  I  C  C  K  T  W  K  R  K  K  S  E  T  E  Q  T  K  T  K  L  K  A  A  A  F  E  S  C  T  Q  K  L  I  *  C  C  S  S  Q  S  N  Y  I  E  E  T  L  A  G  *  R  R  E  L  Q  *  R  R  *  *  R  N  R  G  G  A  G  *  C  W  R  W  M  E  V  W  *  K  R  *  R  R  *  R  D  *  R  R  *  L  G  L  Y  V  I  H  T  H  R  *  L  S  S  T  L  C  F  G  I  *  M  V  V  I  V  *  K  M  G  L  V  L  A  C  *  C  L  F  V  F  Y  E  K  H  E  A  L  A  V  S  *  T  P  P  S  H  L  A  P  W  N  M  E  I  C  R  T  L  *  A  S  Y  S  F  L  F  H  K  N  K  L  T  S  L  I  T  I  I  I  M  Y  K  F  D  H  F  E  D  L  R  S  I  I  C  Y  I  *  F  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94527" stop="94373"/>
                    <exon start="93147" stop="93089"/>
                    <exon start="92919" stop="92720"/>
                    <exon start="90640" stop="90551"/>
                    <exon start="88300" stop="88157"/>
                    <exon start="87432" stop="86866"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQTLTLIVKIHLINCSSPVDEEMETHMSHHHQYERRPIYKSKAPASKWFKEWVPQDVVATGGKCYVLKWVNEATLKALREKPKEAGVPVSEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPECGKRYAHEYKLKNHISSTHQKNNTPDAHAHPHPHAHAPKYTPPVEKPVKTPKSSSAAYGSSSSDRPYSCPYEGCDKSYIHEYKLNLHLRNMHPGHFPEENARNVQSTADNEIDEGSDQDAYAARRGNGRSQKQSRPKPSLKQPPLKVARKSSSSAAQANLIISKKPWPVKEENFNEEDSEETEEERDDVGDGWRYGENDDDDEETEEDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="100560" PGL_stop="103481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100608" e_stop="101167"/>
            <exon e_start="101797" e_stop="101879"/>
            <exon e_start="102036" e_stop="102095"/>
            <exon e_start="102277" e_stop="102385"/>
            <exon e_start="102494" e_stop="102546"/>
            <exon e_start="102640" e_stop="102720"/>
            <exon e_start="102817" e_stop="102929"/>
            <exon e_start="103097" e_stop="103477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.308" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100608" e_stop="101167" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="101168" i_stop="101796" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101797" e_stop="101879" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.736">
            <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102036" e_stop="102095" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102277" e_stop="102385" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.766" acc_prob="0.975">
            <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102494" e_stop="102546" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.895" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102640" e_stop="102720" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.308" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102817" e_stop="102929" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="103097" e_stop="103477" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100608" stop="101158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100627" stop="101167"/>
              <exon start="101797" stop="101869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102929"/>
              <exon start="103097" stop="103265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102083" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102929"/>
              <exon start="103097" stop="103477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTGGTGATTACCTTGAACCTGATAAAGTAGCACAAATCAGTATTTCTTCTTTCTGCTATCTTCCTACTGTTTCATTTTGACTTTGACATAATATTATTATGCATGACTCGTTTGCTCAATTCCCTGATGATGAGGTTGAAGTTGTTCTCTTGTATTTGATTGTCAGGAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTT : TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAG : GAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGG : ATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT : TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG : CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG : ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAA : GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACATGAATTTCAAATTTGAAATCCAAATTGCA</gDNA_template>
            <first_frame> Y  *  *  L  Q  F  I  C  E  G  K  K  C  L  C  H  N  Y  I  S  L  H  C  Q  G  Y  K  *  I  S  C  E  N  R  M  V  *  C  C  *  R  Y  K  M  Q  I  L  K  *  R  A  I  A  I  *  S  *  K  L  *  S  I  C  S  S  I  L  V  F  I  L  F  *  V  S  D  N  I  R  C  P  G  D  Y  L  E  P  D  K  V  A  Q  I  S  I  S  S  F  C  Y  L  P  T  V  S  F  *  L  *  H  N  I  I  M  H  D  S  F  A  Q  F  P  D  D  E  V  E  V  V  L  L  Y  L  I  V  R  R  L  F  D  E  A  S  L  E  Y  I  V  S  *  P  T  F  Y  *  I  W  S  F  D  G  L  L  S  L  K  N  L  P  I  Q  Y  P  W  L  R  G  S  N  T  A  G  C  *  D  R  F :   Y  G  E  *  S  *  S  I  I  *  A  V  Q  E  N  K  Q  L  Y  N  *  *  W  T  N  S  Q   : G  R  I  S  A  G  N  F  Q  E  P  K  Q  E  R  S  F  C  R  Q   : D  F  *  S  I  *  F  Q  A  Q  R  S  D  W  I  W  R  I  C  Q  I  I  E  C  I  P  P  K  C  T  S  S  R  *  N  C  I :   C  I  P  I  I  *  S  K  A  D  W  L  Y  *  E  R  R   : A  E  R  D  G  F  G  A  A  E  *  V  R  L  D  S  F  G  *  Y  S  *  N  D  C  R  *   : D  I  *  *  S  R  *  K  E  *  R  E  D  R  *  R  R  M  E  G  V  C  F  N  E  S  L  S  S  K  E  Y  D  P  S  I  S  Q  :  G  Y  N  F  S  I  S  *  L  C  D  E  L  *  G  G  R  F  G  S  L  D  S  C  F  *  H  I  T  R  V  V  E  T  P  T  Y  Q  V  I  S  S  E  L  V  M  Q  Q  K  C  K  R  V  E  I  N  R  I  L  H  *  N  F  G  S  W  L  H  Q  I  D  A  E  N  Q  F  F  C  Q  L  Q  *  A  L  A  R  C  T  T  F  K  V  S  S  *  S  V  G  V  R  Y  Q  G  S  I  E  S  R  S  F  V  Q  M  *  *  T  N  M  N  F  K  F  E  I  Q  I  A </first_frame>
            <second_frame>  I  S  N  S  S  L  F  V  R  E  K  N  V  Y  V  I  T  I  S  L  C  I  V  K  A  I  S  K  L  V  A  K  T  E  W  Y  S  A  A  E  D  I  R  C  R  F  *  S  E  G  Q  L  L  Y  R  A  R  S  F  D  P  F  V  L  L  F  L  F  L  S  Y  F  E  *  A  I  T  F  D  V  L  V  I  T  L  N  L  I  K  *  H  K  S  V  F  L  L  S  A  I  F  L  L  F  H  F  D  F  D  I  I  L  L  C  M  T  R  L  L  N  S  L  M  M  R  L  K  L  F  S  C  I  *  L  S  G  G  C  L  T  K  L  H  *  N  I  S  L  V  N  Q  H  F  I  E  F  G  L  L  M  G  C  F  P  S  K  I  C  R  F  S  T  P  G  Y  E  D  P  T  L  L  A  A  E  T  A   : F  T  V  S  E  V  E  A  L  Y  E  L  F  K  K  I  S  S  S  I  I  D  D  G  L  I  H  K  :  E  E  F  Q  L  A  I  F  K  N  Q  N  R  R  D  L  F  A  D  R  :  I  F  D  L  F  D  F  K  R  N  G  V  I  G  F  G  E  F  V  R  S  L  S  V  F  H  P  N  A  P  V  A  D  K  I  A   : F  A  F  R  L  Y  D  L  R  Q  T  G  Y  I  E  R  E  E  :  L  K  E  M  V  L  A  L  L  N  E  S  D  L  I  L  S  D  D  I  V  E  M  I  V  D  K  :  T  F  D  E  A  D  K  K  S  D  G  K  I  D  E  E  E  W  K  E  F  V  S  M  N  P  S  L  L  K  N  M  T  L  P  Y  L  K :   D  I  T  L  A  F  P  S  F  V  M  N  S  E  V  E  D  S  E  V  *  T  H  A  F  S  I  *  H  A  *  L  K  L  P  R  I  R  *  S  L  P  N  *  *  C  N  R  N  A  K  E  S  R  L  I  G  F  C  I  E  I  L  E  V  G  Y  T  R  L  M  Q  K  I  S  S  F  A  S  S  N  R  H  *  Q  D  V  L  L  L  K  Y  L  A  S  L  L  E  L  D  I  K  V  V  L  K  V  E  V  L  F  K  C  N  K  Q  T  *  I  S  N  L  K  S  K  L   </second_frame>
            <third_frame>   L  V  T  P  V  Y  L  *  G  K  K  M  F  M  S  *  L  Y  L  F  A  L  S  R  L  *  V  N  *  L  R  K  Q  N  G  I  V  L  L  K  I  *  D  A  D  F  E  V  K  G  N  C  Y  I  E  L  E  A  L  I  H  L  F  F  Y  S  C  F  Y  L  I  L  S  K  R  *  H  S  M  S  W  *  L  P  *  T  *  *  S  S  T  N  Q  Y  F  F  F  L  L  S  S  Y  C  F  I  L  T  L  T  *  Y  Y  Y  A  *  L  V  C  S  I  P  *  *  *  G  *  S  C  S  L  V  F  D  C  Q  E  A  V  *  R  S  F  T  R  I  Y  R  *  L  T  N  I  L  L  N  L  V  F  *  W  A  A  F  P  Q  K  S  A  D  S  V  P  L  V  T  R  I  Q  H  C  W  L  L  R  P  L  :  L  R  *  V  K  L  K  H  Y  M  S  C  S  R  K  *  A  A  L  *  L  M  M  D  *  F  T  R :   K  N  F  S  W  Q  F  S  R  T  K  T  G  E  I  F  L  Q  T  G :   F  L  I  Y  L  I  S  S  A  T  E  *  L  D  L  E  N  L  S  D  H  *  V  Y  S  T  Q  M  H  Q  *  Q  I  K  L  H  :  L  H  S  D  Y  M  I  *  G  R  L  V  I  L  R  E  K  S :   *  K  R  W  F  W  R  C  *  M  S  Q  T  *  F  F  R  M  I  *  L  K  *  L  *  I  R :   H  L  M  K  Q  I  K  R  V  T  G  R  *  M  K  K  N  G  R  S  L  F  Q  *  I  P  L  F  *  R  I  *  P  F  H  I  S   : R  I  *  L  *  H  F  L  A  L  *  *  T  L  R  W  K  I  R  K  S  R  L  M  L  L  A  Y  N  T  R  S  *  N  S  H  V  S  G  N  L  F  R  T  S  D  A  T  E  M  Q  K  S  R  D  *  S  D  F  A  L  K  F  W  K  L  A  T  P  D  *  C  R  K  S  V  L  L  P  A  P  I  G  I  S  K  M  Y  Y  F  *  S  I  *  L  V  C  W  S  *  I  S  R  *  Y  *  K  S  K  F  C  S  N  V  I  N  K  H  E  F  Q  I  *  N  P  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101041" stop="101167"/>
                    <exon start="101797" stop="101879"/>
                    <exon start="102036" stop="102095"/>
                    <exon start="102277" stop="102385"/>
                    <exon start="102494" stop="102546"/>
                    <exon start="102640" stop="102720"/>
                    <exon start="102817" stop="102929"/>
                    <exon start="103097" stop="103160"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISLVNQHFIEFGLLMGCFPSKICRFSTPGYEDPTLLAAETAFTVSEVEALYELFKKISSSIIDDGLIHKEEFQLAIFKNQNRRDLFADRIFDLFDFKRNGVIGFGEFVRSLSVFHPNAPVADKIAFAFRLYDLRQTGYIEREELKEMVLALLNESDLILSDDIVEMIVDKTFDEADKKSDGKIDEEEWKEFVSMNPSLLKNMTLPYLKDITLAFPSFVMNSEVEDSEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100560" e_stop="100851"/>
            <exon e_start="101015" e_stop="101167"/>
            <exon e_start="101797" e_stop="101879"/>
            <exon e_start="102036" e_stop="102095"/>
            <exon e_start="102277" e_stop="102385"/>
            <exon e_start="102494" e_stop="102546"/>
            <exon e_start="102640" e_stop="102720"/>
            <exon e_start="102817" e_stop="102929"/>
            <exon e_start="103097" e_stop="103481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.575" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.308" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100560" e_stop="100851" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.575">
            <gDNA_intron_boundary i_start="100852" i_stop="101014" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101015" e_stop="101167" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="101168" i_stop="101796" i_length="629"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101797" e_stop="101879" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.736">
            <gDNA_intron_boundary i_start="101880" i_stop="102035" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102036" e_stop="102095" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102096" i_stop="102276" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102277" e_stop="102385" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.766" acc_prob="0.975">
            <gDNA_intron_boundary i_start="102386" i_stop="102493" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102494" e_stop="102546" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.895" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102547" i_stop="102639" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102640" e_stop="102720" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.308" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102721" i_stop="102816" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="102817" e_stop="102929" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102930" i_stop="103096" i_length="167"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="103097" e_stop="103481" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100560" stop="100851"/>
              <exon start="101015" stop="101167"/>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102929"/>
              <exon start="103097" stop="103481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102929"/>
              <exon start="103097" stop="103265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101797" stop="101879"/>
              <exon start="102036" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102083" stop="102095"/>
              <exon start="102277" stop="102385"/>
              <exon start="102494" stop="102546"/>
              <exon start="102640" stop="102720"/>
              <exon start="102817" stop="102929"/>
              <exon start="103097" stop="103477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGTAATATGTTTTCTTTCAGAGCTATGGTATTTTAGGTCCATACATATTAGTAACTCCAGTTTATTTGTGAGGGAAAAAAATGTTTATGTCATAACTATATCTCTTTGCATTGTCAAGGCTATAAGTAAATTAGTTGCGAAAACAGAATGGTATAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTATCTTATTTTGAGTAAGCGATAACATTCGATGTCCTG : GAGGCTGTTTGACGAAGCTTCACTAGAATATATCGTTAGTTAACCAACATTTTATTGAATTTGGTCTTTTGATGGGCTGCTTTCCCTCAAAAATCTGCCGATTCAGTACCCCTGGTTACGAGGATCCAACACTGCTGGCTGCTGAGACCGCTT : TTACGGTGAGTGAAGTTGAAGCATTATATGAGCTGTTCAAGAAAATAAGCAGCTCTATAATTGATGATGGACTAATTCACAAG : GAAGAATTTCAGCTGGCAATTTTCAAGAACCAAAACAGGAGAGATCTTTTTGCAGACAGG : ATTTTTGATCTATTTGATTTCAAGCGCAACGGAGTGATTGGATTTGGAGAATTTGTCAGATCATTGAGTGTATTCCACCCAAATGCACCAGTAGCAGATAAAATTGCAT : TTGCATTCCGATTATATGATCTAAGGCAGACTGGTTATATTGAGAGAGAAGAG : CTGAAAGAGATGGTTTTGGCGCTGCTGAATGAGTCAGACTTGATTCTTTCGGATGATATAGTTGAAATGATTGTAGATAAG : ACATTTGATGAAGCAGATAAAAAGAGTGACGGGAAGATAGATGAAGAAGAATGGAAGGAGTTTGTTTCAATGAATCCCTCTCTTCTAAAGAATATGACCCTTCCATATCTCAA : GGATATAACTTTAGCATTTCCTAGCTTTGTGATGAACTCTGAGGTGGAAGATTCGGAAGTCTAGACTCATGCTTTTAGCATATAACACGCGTAGTTGAAACTCCCACGTATCAGGTAATCTCTTCCGAACTAGTGATGCAACAGAAATGCAAAAGAGTCGAGATTAATCGGATTTTGCATTGAAATTTTGGAAGTTGGCTACACCAGATTGATGCAGAAAATCAGTTCTTTTGCCAGCTCCAATAGGCATTAGCAAGATGTACTACTTTTAAAGTATCTAGCTAGTCTGTTGGAGTTAGATATCAAGGTAGTATTGAAAGTCGAAGTTTTGTTCAAATGTAATAAACAAACATGAATTTCAAATTTGAAATCCAAATTGCAATGA</gDNA_template>
            <first_frame> C  C  N  M  F  S  F  R  A  M  V  F  *  V  H  T  Y  *  *  L  Q  F  I  C  E  G  K  K  C  L  C  H  N  Y  I  S  L  H  C  Q  G  Y  K  *  I  S  C  E  N  R  M  V  *  C  C  *  R  Y  K  M  Q  I  L  K  *  R  A  I  A  I  *  S  *  K  L  *  S  I  C  S  S  I  L  V  F  I  L  F  *  V  S  D  N  I  R  C  P   : G  G  C  L  T  K  L  H  *  N  I  S  L  V  N  Q  H  F  I  E  F  G  L  L  M  G  C  F  P  S  K  I  C  R  F  S  T  P  G  Y  E  D  P  T  L  L  A  A  E  T  A   : F  T  V  S  E  V  E  A  L  Y  E  L  F  K  K  I  S  S  S  I  I  D  D  G  L  I  H  K  :  E  E  F  Q  L  A  I  F  K  N  Q  N  R  R  D  L  F  A  D  R  :  I  F  D  L  F  D  F  K  R  N  G  V  I  G  F  G  E  F  V  R  S  L  S  V  F  H  P  N  A  P  V  A  D  K  I  A   : F  A  F  R  L  Y  D  L  R  Q  T  G  Y  I  E  R  E  E  :  L  K  E  M  V  L  A  L  L  N  E  S  D  L  I  L  S  D  D  I  V  E  M  I  V  D  K  :  T  F  D  E  A  D  K  K  S  D  G  K  I  D  E  E  E  W  K  E  F  V  S  M  N  P  S  L  L  K  N  M  T  L  P  Y  L  K :   D  I  T  L  A  F  P  S  F  V  M  N  S  E  V  E  D  S  E  V  *  T  H  A  F  S  I  *  H  A  *  L  K  L  P  R  I  R  *  S  L  P  N  *  *  C  N  R  N  A  K  E  S  R  L  I  G  F  C  I  E  I  L  E  V  G  Y  T  R  L  M  Q  K  I  S  S  F  A  S  S  N  R  H  *  Q  D  V  L  L  L  K  Y  L  A  S  L  L  E  L  D  I  K  V  V  L  K  V  E  V  L  F  K  C  N  K  Q  T  *  I  S  N  L  K  S  K  L  Q  * </first_frame>
            <second_frame>  V  V  I  C  F  L  S  E  L  W  Y  F  R  S  I  H  I  S  N  S  S  L  F  V  R  E  K  N  V  Y  V  I  T  I  S  L  C  I  V  K  A  I  S  K  L  V  A  K  T  E  W  Y  S  A  A  E  D  I  R  C  R  F  *  S  E  G  Q  L  L  Y  R  A  R  S  F  D  P  F  V  L  L  F  L  F  L  S  Y  F  E  *  A  I  T  F  D  V  L  :  E  A  V  *  R  S  F  T  R  I  Y  R  *  L  T  N  I  L  L  N  L  V  F  *  W  A  A  F  P  Q  K  S  A  D  S  V  P  L  V  T  R  I  Q  H  C  W  L  L  R  P  L  :  L  R  *  V  K  L  K  H  Y  M  S  C  S  R  K  *  A  A  L  *  L  M  M  D  *  F  T  R :   K  N  F  S  W  Q  F  S  R  T  K  T  G  E  I  F  L  Q  T  G :   F  L  I  Y  L  I  S  S  A  T  E  *  L  D  L  E  N  L  S  D  H  *  V  Y  S  T  Q  M  H  Q  *  Q  I  K  L  H  :  L  H  S  D  Y  M  I  *  G  R  L  V  I  L  R  E  K  S :   *  K  R  W  F  W  R  C  *  M  S  Q  T  *  F  F  R  M  I  *  L  K  *  L  *  I  R :   H  L  M  K  Q  I  K  R  V  T  G  R  *  M  K  K  N  G  R  S  L  F  Q  *  I  P  L  F  *  R  I  *  P  F  H  I  S   : R  I  *  L  *  H  F  L  A  L  *  *  T  L  R  W  K  I  R  K  S  R  L  M  L  L  A  Y  N  T  R  S  *  N  S  H  V  S  G  N  L  F  R  T  S  D  A  T  E  M  Q  K  S  R  D  *  S  D  F  A  L  K  F  W  K  L  A  T  P  D  *  C  R  K  S  V  L  L  P  A  P  I  G  I  S  K  M  Y  Y  F  *  S  I  *  L  V  C  W  S  *  I  S  R  *  Y  *  K  S  K  F  C  S  N  V  I  N  K  H  E  F  Q  I  *  N  P  N  C  N   </second_frame>
            <third_frame>   L  *  Y  V  F  F  Q  S  Y  G  I  L  G  P  Y  I  L  V  T  P  V  Y  L  *  G  K  K  M  F  M  S  *  L  Y  L  F  A  L  S  R  L  *  V  N  *  L  R  K  Q  N  G  I  V  L  L  K  I  *  D  A  D  F  E  V  K  G  N  C  Y  I  E  L  E  A  L  I  H  L  F  F  Y  S  C  F  Y  L  I  L  S  K  R  *  H  S  M  S  W :   R  L  F  D  E  A  S  L  E  Y  I  V  S  *  P  T  F  Y  *  I  W  S  F  D  G  L  L  S  L  K  N  L  P  I  Q  Y  P  W  L  R  G  S  N  T  A  G  C  *  D  R  F :   Y  G  E  *  S  *  S  I  I  *  A  V  Q  E  N  K  Q  L  Y  N  *  *  W  T  N  S  Q   : G  R  I  S  A  G  N  F  Q  E  P  K  Q  E  R  S  F  C  R  Q   : D  F  *  S  I  *  F  Q  A  Q  R  S  D  W  I  W  R  I  C  Q  I  I  E  C  I  P  P  K  C  T  S  S  R  *  N  C  I :   C  I  P  I  I  *  S  K  A  D  W  L  Y  *  E  R  R   : A  E  R  D  G  F  G  A  A  E  *  V  R  L  D  S  F  G  *  Y  S  *  N  D  C  R  *   : D  I  *  *  S  R  *  K  E  *  R  E  D  R  *  R  R  M  E  G  V  C  F  N  E  S  L  S  S  K  E  Y  D  P  S  I  S  Q  :  G  Y  N  F  S  I  S  *  L  C  D  E  L  *  G  G  R  F  G  S  L  D  S  C  F  *  H  I  T  R  V  V  E  T  P  T  Y  Q  V  I  S  S  E  L  V  M  Q  Q  K  C  K  R  V  E  I  N  R  I  L  H  *  N  F  G  S  W  L  H  Q  I  D  A  E  N  Q  F  F  C  Q  L  Q  *  A  L  A  R  C  T  T  F  K  V  S  S  *  S  V  G  V  R  Y  Q  G  S  I  E  S  R  S  F  V  Q  M  *  *  T  N  M  N  F  K  F  E  I  Q  I  A  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101041" stop="101167"/>
                    <exon start="101797" stop="101879"/>
                    <exon start="102036" stop="102095"/>
                    <exon start="102277" stop="102385"/>
                    <exon start="102494" stop="102546"/>
                    <exon start="102640" stop="102720"/>
                    <exon start="102817" stop="102929"/>
                    <exon start="103097" stop="103160"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISLVNQHFIEFGLLMGCFPSKICRFSTPGYEDPTLLAAETAFTVSEVEALYELFKKISSSIIDDGLIHKEEFQLAIFKNQNRRDLFADRIFDLFDFKRNGVIGFGEFVRSLSVFHPNAPVADKIAFAFRLYDLRQTGYIEREELKEMVLALLNESDLILSDDIVEMIVDKTFDEADKKSDGKIDEEEWKEFVSMNPSLLKNMTLPYLKDITLAFPSFVMNSEVEDSEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="104987" PGL_stop="106086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104987" e_stop="105060"/>
            <exon e_start="105597" e_stop="106086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.939" e_score="0.892"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.892">
            <gDNA_exon_boundary e_start="104987" e_stop="105060" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.939">
            <gDNA_intron_boundary i_start="105061" i_stop="105596" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="105597" e_stop="106086" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104987" stop="105060"/>
              <exon start="105597" stop="106086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAAACCCAAATTTATGAATCCAAATCTTGCCCACTGAATCTAAAAAAGTGCCGATAGGATTTCCACTTTCAG : AATTGTGAGATTGATTGGATCAATGTGTGAACTGTGGATGACTTAATCTGTAATGCAATCAATAAATTCGGGTGAAAAGAAGTGTTTGAAACGTTCGAGATCATTTTCAAGTGAGATGCCAGGGACTGATACAAATGTTGCAAAGCCTTTAGAGGATTGCGTCCTGTTTCCTGTTGAAGATATAGTGCAGTATCCTCTACCTGGTTGTGGTTCACCAACGTCTATAGGTTTTAGTCCAGATGATAGTTTAGTTACATATTTATATAGTCCAAACCAAAATCTATGTAGAAAGGTTTTTGTATTGGATCTCAAGAATGGAAGGCATGAATTGTTCTTTAGTCCACCAGATGGTGGACTCGATGAGAATAACTTATCTGCTGAAGAGAAGCTTAGAAGGGAGAGGTCAAGGGAACGTGGTTTAGGGGTAACACGATATGAGTGGGTTAAGGCAAGCGCCAGACGGAAAGTCATTATGGTACCACTACCTGCT</gDNA_template>
            <first_frame> L  K  P  K  F  M  N  P  N  L  A  H  *  I  *  K  S  A  D  R  I  S  T  F  R :   I  V  R  L  I  G  S  M  C  E  L  W  M  T  *  S  V  M  Q  S  I  N  S  G  E  K  K  C  L  K  R  S  R  S  F  S  S  E  M  P  G  T  D  T  N  V  A  K  P  L  E  D  C  V  L  F  P  V  E  D  I  V  Q  Y  P  L  P  G  C  G  S  P  T  S  I  G  F  S  P  D  D  S  L  V  T  Y  L  Y  S  P  N  Q  N  L  C  R  K  V  F  V  L  D  L  K  N  G  R  H  E  L  F  F  S  P  P  D  G  G  L  D  E  N  N  L  S  A  E  E  K  L  R  R  E  R  S  R  E  R  G  L  G  V  T  R  Y  E  W  V  K  A  S  A  R  R  K  V  I  M  V  P  L  P  A </first_frame>
            <second_frame>  *  N  P  N  L  *  I  Q  I  L  P  T  E  S  K  K  V  P  I  G  F  P  L  S   : E  L  *  D  *  L  D  Q  C  V  N  C  G  *  L  N  L  *  C  N  Q  *  I  R  V  K  R  S  V  *  N  V  R  D  H  F  Q  V  R  C  Q  G  L  I  Q  M  L  Q  S  L  *  R  I  A  S  C  F  L  L  K  I  *  C  S  I  L  Y  L  V  V  V  H  Q  R  L  *  V  L  V  Q  M  I  V  *  L  H  I  Y  I  V  Q  T  K  I  Y  V  E  R  F  L  Y  W  I  S  R  M  E  G  M  N  C  S  L  V  H  Q  M  V  D  S  M  R  I  T  Y  L  L  K  R  S  L  E  G  R  G  Q  G  N  V  V  *  G  *  H  D  M  S  G  L  R  Q  A  P  D  G  K  S  L  W  Y  H  Y  L   </second_frame>
            <third_frame>   K  T  Q  I  Y  E  S  K  S  C  P  L  N  L  K  K  C  R  *  D  F  H  F  Q  :  N  C  E  I  D  W  I  N  V  *  T  V  D  D  L  I  C  N  A  I  N  K  F  G  *  K  E  V  F  E  T  F  E  I  I  F  K  *  D  A  R  D  *  Y  K  C  C  K  A  F  R  G  L  R  P  V  S  C  *  R  Y  S  A  V  S  S  T  W  L  W  F  T  N  V  Y  R  F  *  S  R  *  *  F  S  Y  I  F  I  *  S  K  P  K  S  M  *  K  G  F  C  I  G  S  Q  E  W  K  A  *  I  V  L  *  S  T  R  W  W  T  R  *  E  *  L  I  C  *  R  E  A  *  K  G  E  V  K  G  T  W  F  R  G  N  T  I  *  V  G  *  G  K  R  Q  T  E  S  H  Y  G  T  T  T  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105643" stop="106086"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVMQSINSGEKKCLKRSRSFSSEMPGTDTNVAKPLEDCVLFPVEDIVQYPLPGCGSPTSIGFSPDDSLVTYLYSPNQNLCRKVFVLDLKNGRHELFFSPPDGGLDENNLSAEEKLRRERSRERGLGVTRYEWVKASARRKVIMVPLPA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="109618" PGL_stop="110435"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109618" e_stop="110435"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="109618" e_stop="110435" e_length="818"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109618" stop="110435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109621" stop="110138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGAACGGAAAAATGGGTACTGGTGGTCATTGGACAGCAAATATATAGCATTCACACAGGTTGATTCATCTGGGATACCTTTATTCAGAATTATGCATCAAGGTAAAAGTTCCGTTGGTCCTGAGGCACAGGAAGACCACGCTTACCCTTTTGCTGGAGGGCCAAATGTCAAAATTCGCCTGGGAGTGGTTTCAGCTAACGGGGGTCAAATAACATGGATGGATCTTCTTTGTGGTGTAAAGGACAAAGCAAATGAGGACGAGGAATATTTGGCGAGAGTGAATTGGATGCATGGAAATATTCTGACTGCACAAGTCTTGAGTCGATCACAATCCAAACTGAAAATCATTAAATTTGATATCAAGACAGGGAAAAGGAGTGTAATATTGGTTGAAGAACATGATACATGGGTCAATCTTCACGATTGTTTTATACCTTTGGACAAAGGACTCAACAGAACTAATGGTGCATTTATTTGGGCCAGCGAGAAAACAGGGTTCAAACATTTGTATCTTCATGACACAAATGGAGTCTGTTTGGGACCGATAACTCAAGGTGATTGGTTGGTTGAACAAATTGCGGGTGTAAATGAAGTTACTGGCCTTGTATATTTTACAGGAACTTTGGATGGGCCTATGGAATCTCACCTTTACTGTGCTAAATTGTTCCCCGAAGCTAACGGTCCATTGCAGTCCCCTTTGAGATTGACTAATGGACATGGAAAACATGTCGTTGTGCTTGATCGTCAAATGCAAAGATTCATAGATATCCATGATTCCTTGGTCTCACCTCCCAGAATTTCACTCTGCTCCTTGCA</gDNA_template>
            <first_frame> M  E  R  K  N  G  Y  W  W  S  L  D  S  K  Y  I  A  F  T  Q  V  D  S  S  G  I  P  L  F  R  I  M  H  Q  G  K  S  S  V  G  P  E  A  Q  E  D  H  A  Y  P  F  A  G  G  P  N  V  K  I  R  L  G  V  V  S  A  N  G  G  Q  I  T  W  M  D  L  L  C  G  V  K  D  K  A  N  E  D  E  E  Y  L  A  R  V  N  W  M  H  G  N  I  L  T  A  Q  V  L  S  R  S  Q  S  K  L  K  I  I  K  F  D  I  K  T  G  K  R  S  V  I  L  V  E  E  H  D  T  W  V  N  L  H  D  C  F  I  P  L  D  K  G  L  N  R  T  N  G  A  F  I  W  A  S  E  K  T  G  F  K  H  L  Y  L  H  D  T  N  G  V  C  L  G  P  I  T  Q  G  D  W  L  V  E  Q  I  A  G  V  N  E  V  T  G  L  V  Y  F  T  G  T  L  D  G  P  M  E  S  H  L  Y  C  A  K  L  F  P  E  A  N  G  P  L  Q  S  P  L  R  L  T  N  G  H  G  K  H  V  V  V  L  D  R  Q  M  Q  R  F  I  D  I  H  D  S  L  V  S  P  P  R  I  S  L  C  S  L   </first_frame>
            <second_frame>  W  N  G  K  M  G  T  G  G  H  W  T  A  N  I  *  H  S  H  R  L  I  H  L  G  Y  L  Y  S  E  L  C  I  K  V  K  V  P  L  V  L  R  H  R  K  T  T  L  T  L  L  L  E  G  Q  M  S  K  F  A  W  E  W  F  Q  L  T  G  V  K  *  H  G  W  I  F  F  V  V  *  R  T  K  Q  M  R  T  R  N  I  W  R  E  *  I  G  C  M  E  I  F  *  L  H  K  S  *  V  D  H  N  P  N  *  K  S  L  N  L  I  S  R  Q  G  K  G  V  *  Y  W  L  K  N  M  I  H  G  S  I  F  T  I  V  L  Y  L  W  T  K  D  S  T  E  L  M  V  H  L  F  G  P  A  R  K  Q  G  S  N  I  C  I  F  M  T  Q  M  E  S  V  W  D  R  *  L  K  V  I  G  W  L  N  K  L  R  V  *  M  K  L  L  A  L  Y  I  L  Q  E  L  W  M  G  L  W  N  L  T  F  T  V  L  N  C  S  P  K  L  T  V  H  C  S  P  L  *  D  *  L  M  D  M  E  N  M  S  L  C  L  I  V  K  C  K  D  S  *  I  S  M  I  P  W  S  H  L  P  E  F  H  S  A  P  C  </second_frame>
            <third_frame>   G  T  E  K  W  V  L  V  V  I  G  Q  Q  I  Y  S  I  H  T  G  *  F  I  W  D  T  F  I  Q  N  Y  A  S  R  *  K  F  R  W  S  *  G  T  G  R  P  R  L  P  F  C  W  R  A  K  C  Q  N  S  P  G  S  G  F  S  *  R  G  S  N  N  M  D  G  S  S  L  W  C  K  G  Q  S  K  *  G  R  G  I  F  G  E  S  E  L  D  A  W  K  Y  S  D  C  T  S  L  E  S  I  T  I  Q  T  E  N  H  *  I  *  Y  Q  D  R  E  K  E  C  N  I  G  *  R  T  *  Y  M  G  Q  S  S  R  L  F  Y  T  F  G  Q  R  T  Q  Q  N  *  W  C  I  Y  L  G  Q  R  E  N  R  V  Q  T  F  V  S  S  *  H  K  W  S  L  F  G  T  D  N  S  R  *  L  V  G  *  T  N  C  G  C  K  *  S  Y  W  P  C  I  F  Y  R  N  F  G  W  A  Y  G  I  S  P  L  L  C  *  I  V  P  R  S  *  R  S  I  A  V  P  F  E  I  D  *  W  T  W  K  T  C  R  C  A  *  S  S  N  A  K  I  H  R  Y  P  *  F  L  G  L  T  S  Q  N  F  T  L  L  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109618" stop="110433"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MERKNGYWWSLDSKYIAFTQVDSSGIPLFRIMHQGKSSVGPEAQEDHAYPFAGGPNVKIRLGVVSANGGQITWMDLLCGVKDKANEDEEYLARVNWMHGNILTAQVLSRSQSKLKIIKFDIKTGKRSVILVEEHDTWVNLHDCFIPLDKGLNRTNGAFIWASEKTGFKHLYLHDTNGVCLGPITQGDWLVEQIAGVNEVTGLVYFTGTLDGPMESHLYCAKLFPEANGPLQSPLRLTNGHGKHVVVLDRQMQRFIDIHDSLVSPPRISLCSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="111233" PGL_stop="111811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111233" e_stop="111811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111233" e_stop="111811" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111233" stop="111811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111233" stop="111808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111244" stop="111664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGCTCCTGTTACATCATGGGACGGATATGATACATTTTACACAGAAAAGTATATGGGCCTACCATCTGAAAATCCATCAGTCTATCAAGAGGGCTCCGTAATGCACCACGTTGACAAGATCAAAGGGAAGCTTTTACTCGTGCATGGCATGATCGATGAAAATGTGCATTTTAGGCACACTGCTAGGCTTATTAACGCACTTGTGGCAGCCAGAAAGCCTTACGAGTTGTTAATATTCCCAGATGAACGTCACATGCCTCGGAGACTGAGAGATCGTATATACATGGAGGAGAGAATTTGGGAATTCATCGAGAGAAACTTGTGAATGGCCTACTCATTGTTCTAGCAATCGCTTATATGCCCTCGGCTCTCGGGTAGAGAAAATTTTGGGGCTCATTTCCAGGTCAACACAGCATGGTTCACTTGATTATAGAAGAAAAATTTGTACTATTCTCAGGCTAATAAAAGTTGTTTGTGTTAACTTAATCTGTGTTATAGCTGCCATGTACCATTAGTACCAGATGTACAAAAATAATGCAACACTCCATTTCCTGGGAAGAAATTAATTTGTTTTTCA</gDNA_template>
            <first_frame> G  A  P  V  T  S  W  D  G  Y  D  T  F  Y  T  E  K  Y  M  G  L  P  S  E  N  P  S  V  Y  Q  E  G  S  V  M  H  H  V  D  K  I  K  G  K  L  L  L  V  H  G  M  I  D  E  N  V  H  F  R  H  T  A  R  L  I  N  A  L  V  A  A  R  K  P  Y  E  L  L  I  F  P  D  E  R  H  M  P  R  R  L  R  D  R  I  Y  M  E  E  R  I  W  E  F  I  E  R  N  L  *  M  A  Y  S  L  F  *  Q  S  L  I  C  P  R  L  S  G  R  E  N  F  G  A  H  F  Q  V  N  T  A  W  F  T  *  L  *  K  K  N  L  Y  Y  S  Q  A  N  K  S  C  L  C  *  L  N  L  C  Y  S  C  H  V  P  L  V  P  D  V  Q  K  *  C  N  T  P  F  P  G  K  K  L  I  C  F  S </first_frame>
            <second_frame>  V  L  L  L  H  H  G  T  D  M  I  H  F  T  Q  K  S  I  W  A  Y  H  L  K  I  H  Q  S  I  K  R  A  P  *  C  T  T  L  T  R  S  K  G  S  F  Y  S  C  M  A  *  S  M  K  M  C  I  L  G  T  L  L  G  L  L  T  H  L  W  Q  P  E  S  L  T  S  C  *  Y  S  Q  M  N  V  T  C  L  G  D  *  E  I  V  Y  T  W  R  R  E  F  G  N  S  S  R  E  T  C  E  W  P  T  H  C  S  S  N  R  L  Y  A  L  G  S  R  V  E  K  I  L  G  L  I  S  R  S  T  Q  H  G  S  L  D  Y  R  R  K  I  C  T  I  L  R  L  I  K  V  V  C  V  N  L  I  C  V  I  A  A  M  Y  H  *  Y  Q  M  Y  K  N  N  A  T  L  H  F  L  G  R  N  *  F  V  F   </second_frame>
            <third_frame>   C  S  C  Y  I  M  G  R  I  *  Y  I  L  H  R  K  V  Y  G  P  T  I  *  K  S  I  S  L  S  R  G  L  R  N  A  P  R  *  Q  D  Q  R  E  A  F  T  R  A  W  H  D  R  *  K  C  A  F  *  A  H  C  *  A  Y  *  R  T  C  G  S  Q  K  A  L  R  V  V  N  I  P  R  *  T  S  H  A  S  E  T  E  R  S  Y  I  H  G  G  E  N  L  G  I  H  R  E  K  L  V  N  G  L  L  I  V  L  A  I  A  Y  M  P  S  A  L  G  *  R  K  F  W  G  S  F  P  G  Q  H  S  M  V  H  L  I  I  E  E  K  F  V  L  F  S  G  *  *  K  L  F  V  L  T  *  S  V  L  *  L  P  C  T  I  S  T  R  C  T  K  I  M  Q  H  S  I  S  W  E  E  I  N  L  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111233" stop="111559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GAPVTSWDGYDTFYTEKYMGLPSENPSVYQEGSVMHHVDKIKGKLLLVHGMIDENVHFRHTARLINALVAARKPYELLIFPDERHMPRRLRDRIYMEERIWEFIERNL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111504" stop="111749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIVYTWRREFGNSSRETCEWPTHCSSNRLYALGSRVEKILGLISRSTQHGSLDYRRKICTILRLIKVVCVNLICVIAAMYH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="133875" PGL_stop="136114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133875" e_stop="135150"/>
            <exon e_start="135571" e_stop="136114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.764" e_score="0.944"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="133875" e_stop="135150" e_length="1276"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.764">
            <gDNA_intron_boundary i_start="135151" i_stop="135570" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="135571" e_stop="136114" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133875" stop="134656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134225" stop="134947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134225" stop="134847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134564" stop="135150"/>
              <exon start="135571" stop="135593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135021" stop="135150"/>
              <exon start="135571" stop="136114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426159" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135641" stop="136114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135646" stop="136114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGATTCAATCTTGATTTTTTTGACCGTGGGTGGGTCTGTAATTCCCTTGCGTGTTAAGGAGTCCGATTCTATTGCCTATGTGAAATCTAAAATCCAAACATTCAAAGGTTTCTTTGTGAAGAAGCAGAAGCTTGTCTTTGATGGAAAGGAGTTGGCTCGGAACAATTCCCGTGTAGGGGACTATGGGGTTGCTGATGGTAACATGTTGCATTTGGTTCTTCGTCTGTCTGATATACAAGCAATTACTGTTAGGACAGTGTGTGGTCAGGAGTTTGAGTTCCATGTCGATAGAAATAGAAATGTTGGTTATGTTAAAGAGCAGATTGCAAAGAAGGGAAGAGACTTTCGTGATCTTAGGGAACAGGAACTAGTACATGATGGTGTGGAACTAGAAGATAAGAGGCTGATAAATGATATTTGTAAAAGCAACGATGCAGTAATTCACTTGTTGGTGCGTAAATCAGCTAAAGTACAGGCTCAAGCCGTGAAAACAGATTTTGAAGTTTCAGTTGTAGCATCGGCATCAAATGAGAAAGGGTCTGATGCAGTAGAGAAGCTCCAAGAGAGGTTTCAGGCTGTTGGATTCAATACTGTGCCAAGAAGTTTTATTTTGGAACCATTGATTGTCAATCCTAAGATCACACCATCGCCAGTTGTTAAGCAGCTGATTGGCAGCACTTTCGATGGTATGGCAAGGGGTCACCAACCAATTAGGTCCTCTGAGGGATCAGGGGGTGCTTATTTCATGCTAGATTCATATGCTCAGAATTATGTCTCTGTTTTTAAACCAACAGATGAGGAGCCTATGGCTGTGAATAATCCCCGGGGGCTTCCATTGTCTGTAGATGGTGAGGGGTTGAAGAAGGGCACACGTGTAGGAGAGGGGGCATTTAGGGAGGTTGCTGCGTATATTTTGGATCATCCCAAGTCGGGACCTCGCTCAGCTTGTTCTGATGAGAAGGGATTTGCTGGGGTTCCTCCCACAGTTATGGTCAAGTGTTTCCATACTGGTTTCAATCATGCTGAAGGCTCTGAATGTTCATCCAAGAGTCTTAAGATTGGGTCGCTGCAGAAGTTCAGGAAGAACAGTGGAAGTTGCGAGGATTTTGGTCCTCGTGCTTTTCCTGTTGATGCTGTACACAGGATTTCTGTGCTGGACATAAGGTTGGCTAATGCAGATAGGCATGCTGGAAACATTTTGGTTCAGAAGGATGATATGGATGGTCAGGTTGTGCTTATACCAATTGATCATGGCTACTGCTTCCCTGAAAAT : TTTGAAGATTGTACTTTTGATTGGCTCTACTGGCCTCAAGCACAACAACCTTACTCTGCTGAGACAATTGCATACATAAACTCTCTTGATGCTGAGAAAGATATTGAGCTTCTGAAGTTTCATGGTTGGACCATGTCCCTTGCTTGTGCACGTGTATTTCGTATCTCTACTATGCTTCTGAAGAAAGGTGCAGAGAGAGGTCTCACCCCTTGTGCAATTGGAGGAATCATGTGCAGGGAAGCACTGAAGAAGGAGTCTATGATTGAGCAGATTGTTGAAGAAGCTGAAGAGAGTGTGCTCCCAGGAACAAGTGAGGCAGCATTCTTGCAGTCTGTTTCGGTCATCATGGATCGACGCCTTGGTGACCTGATTAAGTAAATATGTATGTATGAAGATGTAAATTTTGTGCATATATTAATAGTTACCTGGTTGAAACTAAATTCTGGGAAAGGGTGGGATGTTAATGTGGTGTTTGTAGGGGGGCTCTTTTAACTTGAAATATTTAGCTTTTTGTTATTGTGGAAAAAAGTATGACTTGATAAAT</gDNA_template>
            <first_frame> Q  *  F  N  L  D  F  F  D  R  G  W  V  C  N  S  L  A  C  *  G  V  R  F  Y  C  L  C  E  I  *  N  P  N  I  Q  R  F  L  C  E  E  A  E  A  C  L  *  W  K  G  V  G  S  E  Q  F  P  C  R  G  L  W  G  C  *  W  *  H  V  A  F  G  S  S  S  V  *  Y  T  S  N  Y  C  *  D  S  V  W  S  G  V  *  V  P  C  R  *  K  *  K  C  W  L  C  *  R  A  D  C  K  E  G  K  R  L  S  *  S  *  G  T  G  T  S  T  *  W  C  G  T  R  R  *  E  A  D  K  *  Y  L  *  K  Q  R  C  S  N  S  L  V  G  A  *  I  S  *  S  T  G  S  S  R  E  N  R  F  *  S  F  S  C  S  I  G  I  K  *  E  R  V  *  C  S  R  E  A  P  R  E  V  S  G  C  W  I  Q  Y  C  A  K  K  F  Y  F  G  T  I  D  C  Q  S  *  D  H  T  I  A  S  C  *  A  A  D  W  Q  H  F  R  W  Y  G  K  G  S  P  T  N  *  V  L  *  G  I  R  G  C  L  F  H  A  R  F  I  C  S  E  L  C  L  C  F  *  T  N  R  *  G  A  Y  G  C  E  *  S  P  G  A  S  I  V  C  R  W  *  G  V  E  E  G  H  T  C  R  R  G  G  I  *  G  G  C  C  V  Y  F  G  S  S  Q  V  G  T  S  L  S  L  F  *  *  E  G  I  C  W  G  S  S  H  S  Y  G  Q  V  F  P  Y  W  F  Q  S  C  *  R  L  *  M  F  I  Q  E  S  *  D  W  V  A  A  E  V  Q  E  E  Q  W  K  L  R  G  F  W  S  S  C  F  S  C  *  C  C  T  Q  D  F  C  A  G  H  K  V  G  *  C  R  *  A  C  W  K  H  F  G  S  E  G  *  Y  G  W  S  G  C  A  Y  T  N  *  S  W  L  L  L  P  *  K   : F  *  R  L  Y  F  *  L  A  L  L  A  S  S  T  T  T  L  L  C  *  D  N  C  I  H  K  L  S  *  C  *  E  R  Y  *  A  S  E  V  S  W  L  D  H  V  P  C  L  C  T  C  I  S  Y  L  Y  Y  A  S  E  E  R  C  R  E  R  S  H  P  L  C  N  W  R  N  H  V  Q  G  S  T  E  E  G  V  Y  D  *  A  D  C  *  R  S  *  R  E  C  A  P  R  N  K  *  G  S  I  L  A  V  C  F  G  H  H  G  S  T  P  W  *  P  D  *  V  N  M  Y  V  *  R  C  K  F  C  A  Y  I  N  S  Y  L  V  E  T  K  F  W  E  R  V  G  C  *  C  G  V  C  R  G  A  L  L  T  *  N  I  *  L  F  V  I  V  E  K  S  M  T  *  *   </first_frame>
            <second_frame>  N  D  S  I  L  I  F  L  T  V  G  G  S  V  I  P  L  R  V  K  E  S  D  S  I  A  Y  V  K  S  K  I  Q  T  F  K  G  F  F  V  K  K  Q  K  L  V  F  D  G  K  E  L  A  R  N  N  S  R  V  G  D  Y  G  V  A  D  G  N  M  L  H  L  V  L  R  L  S  D  I  Q  A  I  T  V  R  T  V  C  G  Q  E  F  E  F  H  V  D  R  N  R  N  V  G  Y  V  K  E  Q  I  A  K  K  G  R  D  F  R  D  L  R  E  Q  E  L  V  H  D  G  V  E  L  E  D  K  R  L  I  N  D  I  C  K  S  N  D  A  V  I  H  L  L  V  R  K  S  A  K  V  Q  A  Q  A  V  K  T  D  F  E  V  S  V  V  A  S  A  S  N  E  K  G  S  D  A  V  E  K  L  Q  E  R  F  Q  A  V  G  F  N  T  V  P  R  S  F  I  L  E  P  L  I  V  N  P  K  I  T  P  S  P  V  V  K  Q  L  I  G  S  T  F  D  G  M  A  R  G  H  Q  P  I  R  S  S  E  G  S  G  G  A  Y  F  M  L  D  S  Y  A  Q  N  Y  V  S  V  F  K  P  T  D  E  E  P  M  A  V  N  N  P  R  G  L  P  L  S  V  D  G  E  G  L  K  K  G  T  R  V  G  E  G  A  F  R  E  V  A  A  Y  I  L  D  H  P  K  S  G  P  R  S  A  C  S  D  E  K  G  F  A  G  V  P  P  T  V  M  V  K  C  F  H  T  G  F  N  H  A  E  G  S  E  C  S  S  K  S  L  K  I  G  S  L  Q  K  F  R  K  N  S  G  S  C  E  D  F  G  P  R  A  F  P  V  D  A  V  H  R  I  S  V  L  D  I  R  L  A  N  A  D  R  H  A  G  N  I  L  V  Q  K  D  D  M  D  G  Q  V  V  L  I  P  I  D  H  G  Y  C  F  P  E  N  :  F  E  D  C  T  F  D  W  L  Y  W  P  Q  A  Q  Q  P  Y  S  A  E  T  I  A  Y  I  N  S  L  D  A  E  K  D  I  E  L  L  K  F  H  G  W  T  M  S  L  A  C  A  R  V  F  R  I  S  T  M  L  L  K  K  G  A  E  R  G  L  T  P  C  A  I  G  G  I  M  C  R  E  A  L  K  K  E  S  M  I  E  Q  I  V  E  E  A  E  E  S  V  L  P  G  T  S  E  A  A  F  L  Q  S  V  S  V  I  M  D  R  R  L  G  D  L  I  K  *  I  C  M  Y  E  D  V  N  F  V  H  I  L  I  V  T  W  L  K  L  N  S  G  K  G  W  D  V  N  V  V  F  V  G  G  L  F  *  L  E  I  F  S  F  L  L  L  W  K  K  V  *  L  D  K  </second_frame>
            <third_frame>   M  I  Q  S  *  F  F  *  P  W  V  G  L  *  F  P  C  V  L  R  S  P  I  L  L  P  M  *  N  L  K  S  K  H  S  K  V  S  L  *  R  S  R  S  L  S  L  M  E  R  S  W  L  G  T  I  P  V  *  G  T  M  G  L  L  M  V  T  C  C  I  W  F  F  V  C  L  I  Y  K  Q  L  L  L  G  Q  C  V  V  R  S  L  S  S  M  S  I  E  I  E  M  L  V  M  L  K  S  R  L  Q  R  R  E  E  T  F  V  I  L  G  N  R  N  *  Y  M  M  V  W  N  *  K  I  R  G  *  *  M  I  F  V  K  A  T  M  Q  *  F  T  C  W  C  V  N  Q  L  K  Y  R  L  K  P  *  K  Q  I  L  K  F  Q  L  *  H  R  H  Q  M  R  K  G  L  M  Q  *  R  S  S  K  R  G  F  R  L  L  D  S  I  L  C  Q  E  V  L  F  W  N  H  *  L  S  I  L  R  S  H  H  R  Q  L  L  S  S  *  L  A  A  L  S  M  V  W  Q  G  V  T  N  Q  L  G  P  L  R  D  Q  G  V  L  I  S  C  *  I  H  M  L  R  I  M  S  L  F  L  N  Q  Q  M  R  S  L  W  L  *  I  I  P  G  G  F  H  C  L  *  M  V  R  G  *  R  R  A  H  V  *  E  R  G  H  L  G  R  L  L  R  I  F  W  I  I  P  S  R  D  L  A  Q  L  V  L  M  R  R  D  L  L  G  F  L  P  Q  L  W  S  S  V  S  I  L  V  S  I  M  L  K  A  L  N  V  H  P  R  V  L  R  L  G  R  C  R  S  S  G  R  T  V  E  V  A  R  I  L  V  L  V  L  F  L  L  M  L  Y  T  G  F  L  C  W  T  *  G  W  L  M  Q  I  G  M  L  E  T  F  W  F  R  R  M  I  W  M  V  R  L  C  L  Y  Q  L  I  M  A  T  A  S  L  K  I :   L  K  I  V  L  L  I  G  S  T  G  L  K  H  N  N  L  T  L  L  R  Q  L  H  T  *  T  L  L  M  L  R  K  I  L  S  F  *  S  F  M  V  G  P  C  P  L  L  V  H  V  Y  F  V  S  L  L  C  F  *  R  K  V  Q  R  E  V  S  P  L  V  Q  L  E  E  S  C  A  G  K  H  *  R  R  S  L  *  L  S  R  L  L  K  K  L  K  R  V  C  S  Q  E  Q  V  R  Q  H  S  C  S  L  F  R  S  S  W  I  D  A  L  V  T  *  L  S  K  Y  V  C  M  K  M  *  I  L  C  I  Y  *  *  L  P  G  *  N  *  I  L  G  K  G  G  M  L  M  W  C  L  *  G  G  S  F  N  L  K  Y  L  A  F  C  Y  C  G  K  K  Y  D  L  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0031P17.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133876" stop="135150"/>
                    <exon start="135571" stop="135948"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDSILIFLTVGGSVIPLRVKESDSIAYVKSKIQTFKGFFVKKQKLVFDGKELARNNSRVGDYGVADGNMLHLVLRLSDIQAITVRTVCGQEFEFHVDRNRNVGYVKEQIAKKGRDFRDLREQELVHDGVELEDKRLINDICKSNDAVIHLLVRKSAKVQAQAVKTDFEVSVVASASNEKGSDAVEKLQERFQAVGFNTVPRSFILEPLIVNPKITPSPVVKQLIGSTFDGMARGHQPIRSSEGSGGAYFMLDSYAQNYVSVFKPTDEEPMAVNNPRGLPLSVDGEGLKKGTRVGEGAFREVAAYILDHPKSGPRSACSDEKGFAGVPPTVMVKCFHTGFNHAEGSECSSKSLKIGSLQKFRKNSGSCEDFGPRAFPVDAVHRISVLDIRLANADRHAGNILVQKDDMDGQVVLIPIDHGYCFPENFEDCTFDWLYWPQAQQPYSAETIAYINSLDAEKDIELLKFHGWTMSLACARVFRISTMLLKKGAERGLTPCAIGGIMCREALKKESMIEQIVEEAEESVLPGTSEAAFLQSVSVIMDRRLGDLIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="136882" PGL_stop="137389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136882" e_stop="137389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="136882" e_stop="137389" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136882" stop="137389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTTTTTGCTAGTATGTTCTAATTACAACAAAAAAAGAAATTACAACATTTATCATTTAATGAAGAGGTATCTCTAGAATGTTGCAAACTTGCTCTTTAGTCAGTTCACCAATAAAGCAAAATTGCAACTTACAGCTTATAAATTATTACACTTAAGAATTAAATAACAATGGTACATACTTATTATTTATATATACCGACTGCAAAAAGACATAAATCTGATATTTATACCTTTCTTTTAAGTACTTAGCCCTGCCAAGAAAGACACCCCAGTTGAAGGCAACCAAGATGATCCATAAATAAACTTTGATACAGTGAACTTGCTGGCCTCTTCGACAGACTTAATCACCCGATACCCTGGCCAAGTGACGCGTTGCCCTACTGCTGCTCCTGGCCCAAAGTTCATGTATTCACCATAATACAATGTGTTCAGCGCAAAATCACCATTCCACTCAAGCCAACCATGTGGGTGTATATGATCACCCATGTTAGATAACATGTATACTG</gDNA_template>
            <first_frame> N  F  L  L  V  C  S  N  Y  N  K  K  R  N  Y  N  I  Y  H  L  M  K  R  Y  L  *  N  V  A  N  L  L  F  S  Q  F  T  N  K  A  K  L  Q  L  T  A  Y  K  L  L  H  L  R  I  K  *  Q  W  Y  I  L  I  I  Y  I  Y  R  L  Q  K  D  I  N  L  I  F  I  P  F  F  *  V  L  S  P  A  K  K  D  T  P  V  E  G  N  Q  D  D  P  *  I  N  F  D  T  V  N  L  L  A  S  S  T  D  L  I  T  R  Y  P  G  Q  V  T  R  C  P  T  A  A  P  G  P  K  F  M  Y  S  P  *  Y  N  V  F  S  A  K  S  P  F  H  S  S  Q  P  C  G  C  I  *  S  P  M  L  D  N  M  Y  T  </first_frame>
            <second_frame>  T  F  C  *  Y  V  L  I  T  T  K  K  E  I  T  T  F  I  I  *  *  R  G  I  S  R  M  L  Q  T  C  S  L  V  S  S  P  I  K  Q  N  C  N  L  Q  L  I  N  Y  Y  T  *  E  L  N  N  N  G  T  Y  L  L  F  I  Y  T  D  C  K  K  T  *  I  *  Y  L  Y  L  S  F  K  Y  L  A  L  P  R  K  T  P  Q  L  K  A  T  K  M  I  H  K  *  T  L  I  Q  *  T  C  W  P  L  R  Q  T  *  S  P  D  T  L  A  K  *  R  V  A  L  L  L  L  L  A  Q  S  S  C  I  H  H  N  T  M  C  S  A  Q  N  H  H  S  T  Q  A  N  H  V  G  V  Y  D  H  P  C  *  I  T  C  I  L </second_frame>
            <third_frame>   L  F  A  S  M  F  *  L  Q  Q  K  K  K  L  Q  H  L  S  F  N  E  E  V  S  L  E  C  C  K  L  A  L  *  S  V  H  Q  *  S  K  I  A  T  Y  S  L  *  I  I  T  L  K  N  *  I  T  M  V  H  T  Y  Y  L  Y  I  P  T  A  K  R  H  K  S  D  I  Y  T  F  L  L  S  T  *  P  C  Q  E  R  H  P  S  *  R  Q  P  R  *  S  I  N  K  L  *  Y  S  E  L  A  G  L  F  D  R  L  N  H  P  I  P  W  P  S  D  A  L  P  Y  C  C  S  W  P  K  V  H  V  F  T  I  I  Q  C  V  Q  R  K  I  T  I  P  L  K  P  T  M  W  V  Y  M  I  T  H  V  R  *  H  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0031P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="137234" PGL_stop="136920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137234" e_stop="136920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="137234" e_stop="136920" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137234" stop="136920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417450" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGGTGATTAAGTCTGTCGAAGAGGCCAGCAAGTTCACTGTATCAAAGTTTATTTATGGATCATCTTGGTTGCCTTCAACTGGGGTGTCTTTCTTGGCAGGGCTAAGTACTTAAAAGAAAGGTATAAATATCAGATTTATGTCTTTTTGCAGTCGGTATATATAAATAATAAGTATGTACCATTGTTATTTAATTCTTAAGTGTAATAATTTATAAGCTGTAAGTTGCAATTTTGCTTTATTGGTGAACTGACTAAAGAGCAAGTTTGCAACATTCTAGAGATACCTCTTCATTAAATGATAAATGTTGTAATTT</gDNA_template>
            <first_frame> R  V  I  K  S  V  E  E  A  S  K  F  T  V  S  K  F  I  Y  G  S  S  W  L  P  S  T  G  V  S  F  L  A  G  L  S  T  *  K  K  G  I  N  I  R  F  M  S  F  C  S  R  Y  I  *  I  I  S  M  Y  H  C  Y  L  I  L  K  C  N  N  L  *  A  V  S  C  N  F  A  L  L  V  N  *  L  K  S  K  F  A  T  F  *  R  Y  L  F  I  K  *  *  M  L  *  F </first_frame>
            <second_frame>  G  *  L  S  L  S  K  R  P  A  S  S  L  Y  Q  S  L  F  M  D  H  L  G  C  L  Q  L  G  C  L  S  W  Q  G  *  V  L  K  R  K  V  *  I  S  D  L  C  L  F  A  V  G  I  Y  K  *  *  V  C  T  I  V  I  *  F  L  S  V  I  I  Y  K  L  *  V  A  I  L  L  Y  W  *  T  D  *  R  A  S  L  Q  H  S  R  D  T  S  S  L  N  D  K  C  C  N   </second_frame>
            <third_frame>   G  D  *  V  C  R  R  G  Q  Q  V  H  C  I  K  V  Y  L  W  I  I  L  V  A  F  N  W  G  V  F  L  G  R  A  K  Y  L  K  E  R  Y  K  Y  Q  I  Y  V  F  L  Q  S  V  Y  I  N  N  K  Y  V  P  L  L  F  N  S  *  V  *  *  F  I  S  C  K  L  Q  F  C  F  I  G  E  L  T  K  E  Q  V  C  N  I  L  E  I  P  L  H  *  M  I  N  V  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0031P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 262 chains have been computed
$ 
$ memory statistics:
$ 992288 bytes spliced alignments in total
$ 134 spliced alignments have been stored
$ 7405 bytes was the average size of a spliced alignment
$ 33944 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1697 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 295 backtrace matrices have been allocated
$ 
$ date finished: 2010-01-22 06:34:47
-->
