<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:35:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587870" ref_strand="+" ref_description="SGN-U587870 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctaccctaggcataaaagggtcactgtaacgattcaaaaaaaaagaatgatataaataagaataaataggtatttaagggcataattgtcctttcacgttttaaatgaataaataaataaataagtaaataaataaaatagatttgtatttatttattttaaatgttatttgactaattcttgaattagtctcctaatccaaatagtcctctctctctcacgcttcttaactccctctctcacgtcctccatcttcctcacattatttctgacaaaacatcaacagttttcatgcttgaagaactaacaaaaattttttaagcaaaagaaaaagtaatcaaaacgtcaaggctaagagaggtttgtcgagagaggtgtacgttgaagtgaattgggagtgctttggaggagttttccgggtaacaacattaaagtttgaacatcgattaaggtatgagttttcttctctctcggtccctttcccaagagacctcttaaggttcaagatattcattccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="30147" stop="29045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29843" g_stop="29345" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="523" r_length="499" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U587870" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29843" e_stop="29345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACGATTCAAAAAAAAAAGAATTATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCATGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAACAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAA-TTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTAAAGTTTGAACATCGATTAAGGTATGGGTTTTCTTCTCTCTTGAATCCTTTCCCAAGAGACCCCTTAAGGTTCAAGATATTCATTCCGAAAAC</genome_strand>
        <mrna_strand>TGTAACGATTCAAAAAA-AAAGAATGATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAATAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTCCTCCATCTTCCTCACATTATTTCTGACAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAATTTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGCTTTGGAGGAGTTTTCCGGGTAACAACATTAAAGTTTGAACATCGATTAAGGTATGAGTTTTCTTCTCTCTCGGTCCCTTTCCCAAGAGACCTCTTAAGGTTCAAGATATTCATTCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567058" ref_strand="+" ref_description="SGN-U567058 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157336033|emb|CAO61863.1| (e_value=0) unnamed; (*ATH) AT5G05970.1 (e_value=0)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains similarity to regulatory protein Nedd1; contains Pfam PF00400: WD domain, G-beta repeat (6 copies, 2 weak):19804256:gb:AV785466.1:AV785466 | chr5:1795354-1799449 FORWAR... ; (*SWP) sp|Q3B7M6|NEDD1_BOVIN (e_value=1e-35) Protein NEDD1 OS=Bos taurus GN=NEDD1; ">
      <seq>taatcaaacacctaaattacaccccacttcactcttctctctctttcccttcttctgaaattcaaatctgtaaactgtatatttcacaatccaagaatctcttcatagatgaattctacagattcgattaagacccttttggctactactggcggtgacactgttaagctttttgacctcactttggaaccccgtgatccctgcattcttagctatactccttcccctggattccaagtcaattccgtcaagtggaatcacactaatttggtggtggcaagcgctggagatgacaagaagatatctttgtggaggaaaaatggacagagtttggggactgtaccactggccggcactgatagtgctgacaatatcgaggagtctatttcaacagttaactttagcagcaaagcatcccgatacatatgttctggaggtagtggccaagttatacgaatatgggatttgcagcggaagcgttgcatcaaatggttgaaaggtcataccaatactattagtggtgcaatgtacaattgtaaagatgagcacttagcttctatcagtcttaatgggaatcttatacttcacaaccttgcttctggtgcaaaggctgctgaactcaaggatccaaatgcgcaggttttgagagtgcttgattattctaagattagcaggcatttattggtgacagctggtgatgatggatctatccacctgtgggatacaactggtcgcagccccaaggtttcttggctaaagcagcattctgcaccaacttctggcattagtttctcaccaacaaacgacaagattgttgctagtgttggtatggataagaagttgtacacttttgactcagggtcaagaaggccgacattttgcattccttacgaggcacctttttcttcactggcatttactgatgacggattcactctggcagctggaacaagtagtggccgggtagtattctatgacgttcgtggaaaaccacaacccttgactgttttacgtgcttatggaaattctgaggctgtgacaagtctatgctggcaaagagcaaaacctgtaattgtcaatgaaaacaattgcactacagaaatggctctcctgggcagtgctgtggaggattcaattttgatgcctgacccacttcctgctatgatgtcatcaagcctagcaacttctatgacaacatcaggttcgagaaccactgttcgttcaggttctgtggactcattttcttttccagcaggcattacaggatctacatctgggacaacaggtttatctccatccgaggaaacacccatacgaagtagtttatggaaaggtggatctttggcaagattacatgctcctcgtaacttcaaggatgatatggaagttttttctcctcttgttgaagttcagccaattacaccttcacttgataagttgtgggatgatcaggaaggtttcaaaaaggattttgataagaagtcatctttgctatttccttcttctctaaggtttccccttccagttgagggtggcaatgagaatcgccccatatttgattggaaatcaagttccttacccaaacaggaggatgcttcttttgcacagttgtcttccactccaacatcttctcgtggtgatgattcttcctccataactcctccagaagcttggggtggtgagagattatcggatagattatctcatcttcggcagtcaggaaatatgccttcccgttttgcaatctcgacatctggtcctcttgcaccaggatctatgttatctggattacaggataattttcctgcaactcagagtatcggctctttgactagttctactctaagtttggctaatttgcgcataaaagaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtagcgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttgggggtttattttaccctaatatagtaaaggagtgtgtgatggctgatcaataacagttaagagtgctgttatggttgtgtacagaaagttggctaggccaatttcagaaatttaatgtacagaactacagatcatctaattcactttgatttaaaaaacatccttccaagttggaggaggtttattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32065" stop="40090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32364" g_stop="32628" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32629" i_stop="32697" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32698" g_stop="32810" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="378" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34659" g_stop="34919" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="639" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34920" i_stop="35046" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.406" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35047" g_stop="35151" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="744" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35152" i_stop="36010" i_length="859">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36011" g_stop="36076" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="810" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36077" i_stop="36203" i_length="127">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36204" g_stop="36425" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="1032" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36426" i_stop="37387" i_length="962">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37388" g_stop="37942" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1033" r_stop="1587" r_length="555" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37943" i_stop="38291" i_length="349">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38292" g_stop="38888" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1588" r_stop="2184" r_length="597" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="2185" r_stop="2361" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="39344" g_stop="39791" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="2362" r_stop="2809" r_length="448" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U567058" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32364" e_stop="32628"/>
          <exon e_start="32698" e_stop="32810"/>
          <exon e_start="34659" e_stop="34919"/>
          <exon e_start="35047" e_stop="35151"/>
          <exon e_start="36011" e_stop="36076"/>
          <exon e_start="36204" e_stop="36425"/>
          <exon e_start="37388" e_stop="37942"/>
          <exon e_start="38292" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAGGTACTTTTGTTTACCTTTTTACTTTTTTCGCTGCAAATCTAAGATAGTTACTTTGTTGTCCTGTTATCGAAATGTAATAATTCCTTAATTTCCAATTTTTTCAATGGATTTTGGCACAGATTTCTTTGAAAATGGTGAATTTTGAGAGGTTAAAGATATGTTGTAGTTTTGACCAACTTCATTTTTACCTCTATTTGCTGCTAAAGTTACAGGAAAATTTGTGCTTTCATATGATAGTTTTTCATTTAGAATGCACTGGGCAGGCCTCAATGATGTTCTCACATATTAGAGAGATTTCTTAAATATTATAGCGTACTGAATAGCACATTTCAAAAAGAGACATTGTAGCACTCTGAAACTATTGTACACATGAGTAGGCTGCTTTTGCCATATACATTTTATCCAAGTTGCTCGGACTCTTCACTTTCGATGCCGCACTAGTGTCGACACAATGTTGGTGTGGTGTGGGATCCGTACGTGATTTGGTCAACCGGTTTCGGGTATTTTGACCCAATTAGAGGGAGAAATTCTGGAAAGGTTTCATGATTTATGTATTCAAAACAAAAGATAAGGTGACATTGAAGAAGATGGAATACCTCGTATATATAAATTTATATTTACTCCCTTTCCTTTTATATCCTGCCATGATTCTCCTTTGGATCAATAGTTTTCTAAAGTTCACCACATAATATCTCATAATTAGGTTTAGTAACTCTAATTTAGATACATCAATTATTTTTAGCTGAATCTCCGCAGTTGTATCCATACATCGATCCGTATCCCTGATCTTAAAATTTAGATCATAGAGGATCTAACCTCTAGATCCGCACCCACATTGGACACCTGCATCTGAGTCCGGCAACTTAGCATTTTATGCAACATGGATACTTCTGGTTGTTCTCATAATACAAAAAAAAAATGGTAGGCTGAAGGGGGGAAATATTTGAGCTGTTTTTATTTATAGTAGTAGCTTCAAAAATTTATTTTTCCCTAATACAGTAATTTCAAATAATGATCATGTTAAATTGCCCTGGGGCATTGATCTAGTGGTAAGATATCAACACATGATGTTTGGGTTAGGTGCACGTCATGGGTTCGAACCCGGTAACAGATAGAAACCTAGTGTTTAACTTTAAAAGGATAGATGGCGGGCCCATTCTCTACCGAGTTTTGAACCATTTGTAGTGGACCTATATATGGGGGATAAAAAGAATTATTATGATAGATTACTCATGTATCATCTAGTACTGTTCTTCTATAGGGGTTCCCCTATTTTCAGATGTTGTACGGTAAGTTCTCAAATACTGTCCTCAGTGTTAAAGCACCAAATGAAAAGTAGACATCAACATGACATTGTTTGAACCATAATAATTTTGTTAAGAGGAAGCCAAACCGATGTCATTTTTGCTAAATTAGAAAAGCGTGTTTGCGAGTGGCTTATAAGAATTCCATAATTTGCTATATTTACTGATCATAAAAGAATACCGTACTTTACAGCTTTTTATGTTGAATGCATTTGCCTGAGATTTTGTGTTCGCCTCTGGGTTTGAATGGGAGAAAGATAGGGTTTGGTCAGGCATAGAATGAATCCTGATTGTTCGATTATCCTATGGCATATATGTTTATGAAAGAAGGATGCTGCATAAATGTGTGCTCTATTGCTATCCTGTGGCAAAAGGTGACGATGATAAGAAGATTGGTTGGAATAAAGTTGGCTTTCTATCCCATCCCCCATTACCTAACATGGGTCTTCGGTATAGGCTGTCAACATTTTTTTGAAGCCCAACTTGTGAAGTGGGCTGTCAATCAATTAATTATCTACAAGTAGTTCATTTCTATCACTTGCAGGAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAGGTTAATTCATTCTTTCCAAGTCCCACTTTGCTGTATAGCATCTTATAGCTGCAATTTGCTTTTGGTTTTTGGAATGATGCTTTCTTTTCTGATGCCATTGTTCTTTGTCTGATTATCACAAGATCAGGTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAGGTTTGTTGACATTCTGGTGTTCTGAGATGATAAAAATTGATTTCATTACATATTGTGTTGTGCCTAGATCTGTATTATTTAAAAGGTTTATAACTGGAGATTAATAGGGAATCCCATTTCTTTCTCCTCGCAATCTGTATTTGCAAGTCAGATCTCATCCACTTATTTGGTATAGGCTAGCTATTGGCTATGACATAGAACATTCTGAAAGAAGAATCACCAATCCATTTGCAACTTACAACTGTTGCTTTTCAGAGGGCTTGACGGTCTTTTACTCATAAAAAGACATTTAGCACTACTCTTTGAGGGTTTGGTAGTCAAAACTCACAGAAAGAATCATTATTACTGCAATATATGCTGTGCTGTTAGAAGCGCTATACGTTATAGTTTGTGGACTTCAAAGTTGGAGTCTGAGCTTGATATGCGACGCTTAAAACACTGAATAATGGTTATGAAGTTTCCAGAGAGTTAATTCGAAACCTCCCAGTCCCTGTCTCAGTACATATTTTGCCTCCCTACCTGCTGACATTCAGAACAATTCATGGTCCTTCTACCTAGGAAAAGAACATGTCATGGTCCTTCCCCGATGCTCTTCTTTTTCCTACTCTTCCTTCTCTCTTTTTTCTTTGAAAGATGAGACCCTCTCTGCAATTCTTTCCACTTCCCATCCTCGGGCATGCTTTCATAGCCATAATGGTTAAATTTGCCAAGTGCAATGGTATCTTACTCTGCATTTTATGTTAATCTTTATAATACCCTGGTATAGTGGTACTCTGGGTTGATGTCTCTCAAGTGTACCTGTCTTGCTTGCTGTGCATCGTTTTATTGGATAACTGATAATTGTTTTTACCTTTAAAAGGTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAGGTTTTTTCTCTATTATACTCATCAACTGGTAGACATATTGTGTACCTGTACTGGAAGAACTGTAAATCAATCCTCTTGCCAAATGATGGAATCATTTACCGGTGTGGTTTTACTGTTATGATTGCAGATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAGGTATTTGATTCTTCTTTTCTTAATAAAGTGTTTTGTGTTAAATAGCAGTTTGTCCTTGACTATGTACTTCTATTATGTCGTTTCATTACCTTGGTTGGCAAAACATGAGAAAGGAAATGAAAAGGAGAGAAAAGATTCAGTTCTTATTAACAAGGATGGAGATATGCGACTGTATAATAAGCCCATATGGAGTTGGTATGCATTTATTCTTAAGTCCACTTGTTGTCTTTAAATTGTTTCATCCGTGATGATAGAGGTGGATATGCATGAAATTGGTAATTGTGCAAGAATGGATGAGGAGATTAGGCGGACAAGTAGGTGACCACGGTTCTTCCAATATGGCATGTAGATTTTGAGAGGTTAGAGATAGCCAGCATTTGCTTCGGGGGAGGGGAGGTAGTCCCACAAGCTATTGACCATCTATGATATGCTCAGGGTGCAGGAATTGGGTACAAAAGTGGCACATCACTTTGTCAGGCATGCCAACCAAATTTCTGGTTGGTCAAATGTGGATAGAATTGAACACATTTCTCAATTTCCTAAAATCAAAGACATTGTTAAGATTCCTTGTTTCTTCCTTGGCTAAATGTTTCTTTGTGGCATTTGTGTATCAATAGTAGACCAATGTCATAATCTGATTATGAGTTGGAAGATGGTATAATGTTGCCTCTTGGCTTGGGCAAGGGAGCTGGTCTGAGAAGCTCTTCCTCTTATTCTCTCTCTCTCTCTCTATCGCTCAGCAAAATTAAACAGCATGGTGTTTCTGTATCTATTTGCATATCAGTATAAATCTACCAATGGAATCCGTGCCGATATTCTGCATCTTTTAGTATGTACTGGCTGACCTTCATATATTTTGTTTATCAGCTTGTTAACTTTAGTTTTGTTCCTCAGTACTGACAGTACCTTTTTTACTACTCTGATTTACTTCCTCTTACTAGAAAAGTATGATGAATTTACAGGCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAGGTTTGTATCTTGTCTGGTTCATGTGCCTACATTTATATTCTTTTGCAAAACAAATTATTTCCTTGGTTGCAGGAAATATGGTGAAAATGTGAGTTGCTCTTCTATATACAAAAATGATTACTTGTTTGTAATTTCCTATGTTGTTGGATGCAAAATGATGCTGTTGATATCTAGTTGAAGTAACTAATTTCTTAAATCCTTCATTCTTGGTTGCTATATAATTTGTGAAGTCAGTTCAAAAAGTGGTGTCAGTATTCTGAAGCTGAAATCAATGACTGGGTTTAGCATTAAAATGCATGAGTTGTTATCTTTCCTTGACAAGTATTTCATATCTTTGATATTCCAGCAGGAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAGGTTTATTCATAT</genome_strand>
        <mrna_strand>TAATCAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTA.....................................................................ATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAG...............................................................................................................................GTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAG...............................................................................................................................ATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAG.............................................................................................................................................................................................................................................................................................................................................................GAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAGGTTTATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596878" ref_strand="+" ref_description="SGN-U596878 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157344198|emb|CAO69131.1| (e_value=3e-75) unnamed; (*ATH) AT5G05970.1 (e_value=2e-66)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains similarity to regulatory protein Nedd1; contains Pfam PF00400: WD domain, G-beta repeat (6 copies, 2 weak):19804256:gb:AV785466.1:AV785466 | chr5:1795354-1799449 FORWAR... ; ">
      <seq>gcttcttctgaaattcaaatctgtaaactgtatatttcacaatccaagaatctcttcatagatgaattctacagattcgattaagacccttttggctactactggcggtgacactgttaagctttttgacctcactttggaaccccgtgatccctgcattcttagctatactccttcccctggattccaagtcaattccgtcaagtggaatcacactagttagtttcccctttctatcatgaatttacattctttttgcaaattcgatttaactttgggtgttgcagatttggtggtggcaagcgctggagatgacaagaagatatctttgtggaggaaaaatggacagagtttggggactgtaccactggccggcactgatagtgctgacaatatcgaggagtctatttcaacagttaactttagcagcaaagcatcccgatacatatgttctggaggtagtggccaagttatacgaatatgggatttgcagcggaagcgttgcatcaaatggttgaaaggtcataccaatactattagtggtgcaatgtacaattgtaaagatgagcacttagcttctatcagtcttaatgggaaatctatacttcacaaccttgcttctggtgcaaaggctgctgaactcanggatccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32112" stop="35214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32411" g_stop="32810" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34659" g_stop="34913" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="655" r_length="255" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U596878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32411" e_stop="32810"/>
          <exon e_start="34659" e_stop="34913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAGGTACTTTTGTTTACCTTTTTACTTTTTTCGCTGCAAATCTAAGATAGTTACTTTGTTGTCCTGTTATCGAAATGTAATAATTCCTTAATTTCCAATTTTTTCAATGGATTTTGGCACAGATTTCTTTGAAAATGGTGAATTTTGAGAGGTTAAAGATATGTTGTAGTTTTGACCAACTTCATTTTTACCTCTATTTGCTGCTAAAGTTACAGGAAAATTTGTGCTTTCATATGATAGTTTTTCATTTAGAATGCACTGGGCAGGCCTCAATGATGTTCTCACATATTAGAGAGATTTCTTAAATATTATAGCGTACTGAATAGCACATTTCAAAAAGAGACATTGTAGCACTCTGAAACTATTGTACACATGAGTAGGCTGCTTTTGCCATATACATTTTATCCAAGTTGCTCGGACTCTTCACTTTCGATGCCGCACTAGTGTCGACACAATGTTGGTGTGGTGTGGGATCCGTACGTGATTTGGTCAACCGGTTTCGGGTATTTTGACCCAATTAGAGGGAGAAATTCTGGAAAGGTTTCATGATTTATGTATTCAAAACAAAAGATAAGGTGACATTGAAGAAGATGGAATACCTCGTATATATAAATTTATATTTACTCCCTTTCCTTTTATATCCTGCCATGATTCTCCTTTGGATCAATAGTTTTCTAAAGTTCACCACATAATATCTCATAATTAGGTTTAGTAACTCTAATTTAGATACATCAATTATTTTTAGCTGAATCTCCGCAGTTGTATCCATACATCGATCCGTATCCCTGATCTTAAAATTTAGATCATAGAGGATCTAACCTCTAGATCCGCACCCACATTGGACACCTGCATCTGAGTCCGGCAACTTAGCATTTTATGCAACATGGATACTTCTGGTTGTTCTCATAATACAAAAAAAAAATGGTAGGCTGAAGGGGGGAAATATTTGAGCTGTTTTTATTTATAGTAGTAGCTTCAAAAATTTATTTTTCCCTAATACAGTAATTTCAAATAATGATCATGTTAAATTGCCCTGGGGCATTGATCTAGTGGTAAGATATCAACACATGATGTTTGGGTTAGGTGCACGTCATGGGTTCGAACCCGGTAACAGATAGAAACCTAGTGTTTAACTTTAAAAGGATAGATGGCGGGCCCATTCTCTACCGAGTTTTGAACCATTTGTAGTGGACCTATATATGGGGGATAAAAAGAATTATTATGATAGATTACTCATGTATCATCTAGTACTGTTCTTCTATAGGGGTTCCCCTATTTTCAGATGTTGTACGGTAAGTTCTCAAATACTGTCCTCAGTGTTAAAGCACCAAATGAAAAGTAGACATCAACATGACATTGTTTGAACCATAATAATTTTGTTAAGAGGAAGCCAAACCGATGTCATTTTTGCTAAATTAGAAAAGCGTGTTTGCGAGTGGCTTATAAGAATTCCATAATTTGCTATATTTACTGATCATAAAAGAATACCGTACTTTACAGCTTTTTATGTTGAATGCATTTGCCTGAGATTTTGTGTTCGCCTCTGGGTTTGAATGGGAGAAAGATAGGGTTTGGTCAGGCATAGAATGAATCCTGATTGTTCGATTATCCTATGGCATATATGTTTATGAAAGAAGGATGCTGCATAAATGTGTGCTCTATTGCTATCCTGTGGCAAAAGGTGACGATGATAAGAAGATTGGTTGGAATAAAGTTGGCTTTCTATCCCATCCCCCATTACCTAACATGGGTCTTCGGTATAGGCTGTCAACATTTTTTTGAAGCCCAACTTGTGAAGTGGGCTGTCAATCAATTAATTATCTACAAGTAGTTCATTTCTATCACTTGCAGGAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAAT</genome_strand>
        <mrna_strand>GCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAAATCTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCANGGATCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573384" ref_strand="-" ref_description="SGN-U573384 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=3e-34) unnamed; (*ATH) AT5G02050.1 (e_value=7e-28)  Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr5:402984-404304 REVERSE | Aliases: T7H20.100... ; (*SWP) sp|Q8W487|YB95_ARATH (e_value=3e-25) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795; ">
      <seq>acgaggcctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttacgaaggacctgatttcacggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaggggctagctacttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttatttttgctatagatgtaccatggccacttaaaatagaatgttggtgaattttatttatacataagagttagccctcgcttttatcagctagttttgtttgcacttgcagcagcaggttgttgcttgttgatgagattgcatttccattgttattgtcaagtcaaatcactttgcgcatgatattgctttcgcttaacatgatttctcaaacatgtattggcttgcatattcatttgtgtctaagtggatcctcgattgtggggtattactctttctgtgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42022" stop="39951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41728" g_stop="41426" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41185" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="336" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41184" i_stop="40951" i_length="234">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40950" g_stop="40874" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="413" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40792" g_stop="40251" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="954" r_length="541" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U573384" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>955</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573384" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41728" e_stop="41426"/>
          <exon e_start="41217" e_stop="41185"/>
          <exon e_start="40950" e_stop="40874"/>
          <exon e_start="40792" e_stop="40251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTCTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAACAATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCTAAGTGGATCCTCGATTGTGGTGTATTACTCTTCTTGTGCTATG</genome_strand>
        <mrna_strand>ACGAGGCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAG..........................................................................................................................................................................................................................................ATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTACGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTTTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAAC-ATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCTAAGTGGATCCTCGATTGTGGGGTATTACTCTTTCTGTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573383" ref_strand="+" ref_description="SGN-U573383 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=1e-77) unnamed; (*ATH) AT2G39795.1 (e_value=4e-49) | Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr2:16604065-16605240 FORWARD | Aliases: None; (*SWP) sp|Q8W487|YB95_ARATH (e_value=3e-48) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795; ">
      <seq>cccaagttgaagttgaaattccgaaaaaaaagtgaagtctcctattaatagaacatgtagcgtaaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaggggctagctacttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttatttttgctataaatgtaccatggccacttaaaatagaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42120" stop="40193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41820" g_stop="41426" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="40874" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="739" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40792" g_stop="40493" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="1039" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U573383" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1039</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41820" e_stop="41426"/>
          <exon e_start="41217" e_stop="40874"/>
          <exon e_start="40792" e_stop="40493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTG</genome_strand>
        <mrna_strand>CCCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAAATGTACCATGGCCACTTAAAATAGAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588054" ref_strand="+" ref_description="SGN-U588054 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=3e-55) unnamed; (*ATH) AT2G39795.1 (e_value=6e-40) | Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr2:16604065-16605240 FORWARD | Aliases: None; (*SWP) sp|Q8W487|YB95_ARATH (e_value=5e-39) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795; ">
      <seq>gattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacgtgagtcttgatgtttaatttaacaaatttcttatctgtttttcattaattactaatatagaatatatatataatcatcagggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaagggctagctacttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41485" stop="40233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41185" g_stop="40533" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U588054" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41185" e_stop="40533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTT</genome_strand>
        <mrna_strand>GATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAAGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573385" ref_strand="+" ref_description="SGN-U573385 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=9e-13) unnamed; (*ATH) AT5G05990.1 (e_value=2e-11)  Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr5:1806798-1807908 REVERSE | Aliases: K18J17.... ; ">
      <seq>gtaaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggtttgattttccccaattctctttttcatgtcgcagatgaattttaatactattaattaaaatcgcctaattatggattctaccactgatttgtttctgtttttaggtggattttatggaaaattcatgctgtttttagttttaatcaaaaaaatatatatgttactggattagcagattttgtactgttttttcattgtgattgcaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttaggntctctaanagaatggactgctttggantttggtatcacagcttttgctganga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42059" stop="40652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41759" g_stop="40952" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U573385" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41759" e_stop="40952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGA</genome_strand>
        <mrna_strand>GTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGNTCTCTAANAG-AATGGA-CTGCTTTGGANTTTGGTATCACAGCTTTTGCTGANGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588293" ref_strand="+" ref_description="SGN-U588293 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcacccctgctcacaagccttttcccatgttaaaatctgaaatcaagatggagggaaaataatttccagtatctggcctttaacgatatacatatattacatcatattttcactttaactactcacactttttttttctctctcacaggcaagggttttagtatccactgaaattattctctcaaaacttagaaaatggctgattctagagaagaatctccagattggctccgcagttttcaggtataactgttttgatttcatcggaattttcataaatttgctcgctatgcacttttcaaagtcgattttatgcactgaatctatgtttaattagttgagcaatcatttgattgagttttaaccgattttgaacatcagtttgattggtctttcagctgcgagattcaaactttgatcaattcaattttttgttcacagtgcttcgtggcggaagtagattcaagtacatgtatatagttttagagcacatttgggttagggtatgctaatttggggcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="50203" stop="51325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50502" g_stop="51025" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U588293" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50502" e_stop="51025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAA-ATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTA</genome_strand>
        <mrna_strand>GCACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAAGATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAAGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574359" ref_strand="+" ref_description="SGN-U574359 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>taaaatctgaaatcaaatggagggaaaataatttccagtatctggcctttaacgatatacatatattacatcatattttcactttaactactcacactttttttttctctctcacaggcaagggttttagtatccactgaaattattctctcaaaacttagaaaatggctgattctagagaagaatctccagattggctccgcagttttcaggcacctgctgcgataatcttgtcatccggatctgaatctcctgtaaataacaaccacctaagtgatgatgaggatagcatcaatctgagtaagctgtttcagaaggataaaacatcactttcagaggaaaaatgtagtcaggatggacatggatctcaactcaagaagacgtccgaagtaaattctccgattaaaaatgaagaagtagatcgcacacctactaggaagagaaagaatgaaaaccagagtgaaaaaaaaggaaaaggcactgacaaggctttaacgaagagaagagcattggagaagccttttacagataaagaacccagtcattcagtctgtacgttgtcatcggattctgagtctcctcatgatggcagttccatgaaagtggaggaagtccttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="50232" stop="55014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50532" g_stop="50743" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50744" i_stop="51774" i_length="1031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51775" g_stop="52033" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="471" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52034" i_stop="52134" i_length="101">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52135" g_stop="52196" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="533" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52197" i_stop="54627" i_length="2431">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54628" g_stop="54714" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="620" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U574359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50532" e_stop="50743"/>
          <exon e_start="51775" e_stop="52033"/>
          <exon e_start="52135" e_stop="52196"/>
          <exon e_start="54628" e_stop="54714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTAGTTTTGTTGAAATCATTGTTTACTGTGTATCACTTCAAGCCGAAAACAGTGGGTGGGGACTTGGAAAAATACTAGTAATGAAAATCCCTTTTTTGTGTAAATTTTTTTGAACCCTACCTTTTCTATTATTCACCTAGATAAGTTTGGATAGTTGTTGCATATAGTTACCTATTGTATTGTTTGTTTTAATGAATACAATGCTTAGATATATTGCATTATTTTCTGTCATACATAATGCCACACATCAACAATTTGAAGGACAATTCTTCATGAAAAGGTACTGGGTAGAGCTATTACAGAAAGGTAGGGTAAGGGATAAAATAAGATTATTAGATAATAAGCAAAGAAAAAATAAGGTAAAAATGCGATCATACCAAATTGGTCGTTATACAACTGAAACTTTTCGTCTTTACCTTCTGATGAATTCAACAATATGATATGTAGAATTTAAATAATCAAAACAAATATTGTATTTAAACTAACAACACAATGCAATGCTAGCAACAACCATCCAAACAAGCTGTAAATGGAAAAATTTAGATGTATAGTATAACCATTCACTATAACTTAATTGCATCCCCTTATGCTTCTTAAAGGCATTATTCAAGTATAAGTTCTGCTGTTTTTATATAAATTCGTTCTCCACACACTTTTGTTGAAAGACTGGGCATTGTTTAGTTATTATTTGTTCTGTTGTTGTTCCATGTTCCTATAACGACCAAGACAATCTGATGTTAAAACAAATGCAGGCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAGGTATTAGCTAATCCATTTTACCGAATGAATCAACTGCATCAGATTGTAAGTGTGGAGTTAAAGAAGGGCCCAGTAAAGATCTTCTCTTTCCAATGATACAGGAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAAGTAAGGAGTTCCCTACTATCTGTATTTATTTTTTAATGTACTGAACTATCATCAGTAAATTAATTTAGTAGTCAAAGTATGTCAAAGAAGCGACTAGATCGTTCAACTTGTACGGTACCAGTTGACCCTATGTTTTTGCTCATATGCAGCTTCAATGAGACCCTTGATCTTTGGTTTTATATTTATTTTGCCCCTATCTCTAGCGAGCTCTATACCAATCATACTTTGGAGATGTCGCAGTCAATGATTGCTCCATCGATAATCTTCAGTGAGTTGTGAATTTTGTTCAATGAAGCAATACCAAATATGCCCCTAGAAAGATCAGACCTACGCCACGAGCTGATGACAACCATGCACCACCTATATCCCTGTTCTCCAAGGCACTCCTATTTTTCAAGAGGGTTTGCAGCAATCAAGCACAAGAAAATAGTGACTTCATAAGCTGATCAGTCAACTATTTCGTCATGTTTTTTTAAATGAAGAGTAAATAGTGACTTAGGCTGGTGCGTTTCTACTTCAGAAGTCATCCATATTGTGAGGAGATTGGTGGAGAAATATAGGAAAAGGAAGAGGGACTTAAATATGGTGTTCATTGACCTTGAAGAAGCCTAAGATAGTCCTGAGGGAAGTCCTCTAGAGATTCTAGATGCTTGGAGAGTAGAGATGTGTTGGTGACTTGCATTAGGGCATTGAAGGACATGTATGATGGATCCCAGATTTGGGTTAAAATGGTGGGAGGAGACTCAACAATTTCCGGTTCAGATGGGGTAGCACCATGGATCAATACTTAGCCTATTCCTATTTTCCTTGGTGATGGATGAATTGACATGATATATTCAAGATGATGTGCTATGGTATATGTTATTGCGGATGATCTTATATTGTTTGATGAGACATGCAATAGAATCAATGCTTGGTTGGAGTTGTGAAGTCAAACTCTAGAGTTCTCTAAACTTAAGGTAAGTTTTATAGTGTGGTGGTTAGAACGACTTTGTTGTGTAGGGCTGAATGTTGGTCAGTCAAGACCCCCCATGTTCAAAAGATGCTAATTGCGGAAATGACAATGTTGAGATAGATGTGTGAGCATATTAAGAGCAATAAAATTTGGAATGAGGATATCCAAGTCAATGTGGGAGTGACCTTTGTGGTGAACAAGATGAGAGTAGCTAGATGAGATGGTTTAAGCATGTGGAGAGGAGATGCGCAAATACCCAGTGAGGAGGCATGAGAGGTTGGATATAGTTGGTATGAGAAGAGGTAGAGGTAGGCCTAAAATGTATAGGGAAAAAAGTGAGTTTGACATGCAATTATGCAATTTTAGTTTACTGTGGACATGAACTTAGATAGGAGGGTGGAAGTCGTGGATTAAGGTAAAAGGTTAGTAGGTAGTGGAGTGTTGTCTTGCTTTTCAATGGGTTTAGGCTTGATGGTGTATGTCGTAGTATTAGCCTTATTCTTGTAGTGTCTTGCTGTTAATTTCTATCCTCATATGTTGTTTATGGTGTTTTGGTTATTCCAATTTTGTTGTTTCTAACTGCTTACTTATTAGGTATGTTTTTCTCACGGTTGTTTTCCCTTTTCATACCTACTTTGATTTGTTGTACTCAACAGAGGGTCCTCCATAAACAGCCTCTCTAGCTCCACGAGGTAGGAGTAATCAGACCCCACTTTCACTTGGTATGATGTTAAAGAGTAAATGGATAAAAGAGCCTAGACATATTAGTACTATTATAGCTTTCTGATAGAATAGTTTTTCTTCTAAATAGTTTCTTATAAGCATTCACTGTGGAAAATGTCTGTGAAATTGCCTTGAACAGTGAAACTGCACTTCTAACTTACCGTAATCAGTTTCTTGATAGTATTTCTCCTCTTATGAAGCAAAAGATGTCCACTAGCTAGCAGTTTAGTTTGGCTGGAAATAATGTTCTAGGCTTCAGGAACAGCCAAGGTAGTTAAAACCTCTTGGTATACTAGAATGATGCAATTGCTTAACGTGGTAATTTATTATATACTGAAATGGCTACTTTACCTAGAATCTGTTCTTCGACAATTTATTTCATACTTCAATTAACTCGTCCAAAATCAATCAGATTAAAACATTTTGACACATCTCTCCTTACCCAATGTAATCTGTTAGATTCATACAAACACTTTTCTCATTCTAGGTATCAGTAATGGTAATCCCACATGTTATCATTAGTTTTGGCAATTGCTACAGGTGGTGATTTTACTTTGGCCATTCTTGAAATTATCACAATATGGTGTAGGCATCTCGTTTTCTCCTTTGATCAGTTGCCTGGAGTTCACAGACATGTAGGCTTAATCCTTAGAGTCTGTGGATCTCCCATACACTTCATTGTTAACTACTATGCAAGTATTGTTGACTATAGTCATCTTAGTTTGATCTCAATCATATATTTGGTTCATACAGGAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGTGGAGGAAGTCCTTGAC</genome_strand>
        <mrna_strand>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAG.....................................................................................................GAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGTGGAGGAAGTCCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569136" ref_strand="+" ref_description="SGN-U569136 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gctgcaggtgagaatgttgatcatcagaccaatgggaatgtcaaagcaaaagctaagaaagcctcggctatggaacaaaagaagggcaagaagggagcaaagataccaaagaaagtaaaaaagaaacctcaagtgcagaagaaaagcaagagcaaaaaataagatatgactctacatatttcatttcgtttgatatgtattctatttattttcttttcttattttctttctttttcttctgttctttgtatacatatactgatcatattttttaaaagctaatgaaagtagtctttaggaagctatataattggtagaggccacataatatgtattatttgcaagattttctcatgattatcctccatattaccataaaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="57257" stop="58314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57546" g_stop="57614" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57615" i_stop="57695" i_length="81">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57696" g_stop="58014" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="385" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U569136" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57546" e_stop="57614"/>
          <exon e_start="57696" e_stop="58014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACCAGAATGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCGGTATGCTCTGTTCTTTTTGGTTACCACTAACAGTTGCTTCACTTTCTAGATCTCAAATTGTGATCCAAGCTCGCTTTGCAGGCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCT</genome_strand>
        <mrna_strand>GCTG-C-AG-GTGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCG.................................................................................GCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583272" ref_strand="+" ref_description="SGN-U583272 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147787311|emb|CAN64634.1| (e_value=3e-60) hypothetical; (*ATH) AT3G49550.1 (e_value=7e-54) | Symbol: None | expressed protein | chr3:18379186-18379629 FORWARD | Aliases: T9C5.140; ">
      <seq>gaaaaagtctcatagagagaaagtgagtgacaagtgagagaaggagaagggaagagcttgttaggtgttcttcatttcgggttcatcagcatccggagcaaggcgagtggggtgtggatatcttctcgaactcaagttttttgattaactgaacaatggaggtacttggaaaatctatggtagcagtgcctacaaatgttatatatctgtcaactattcttggccaagatggcccaaaccctgttcacaagtgtgattggaaatgtgaaaatgaacatgtgtgtgggaacatgttccgctgccgactaactgggctgacacacatttgcgacaaaaattgtaaccagcgaatattgtatgataaccataactctctttgcagagttagccaacagattttccctttaacacaagttgaagtgcaggctgtgaaaggtgtacggaggaagtttgatgctgatagttccccttctgatagctgcgcctttaagcgcagaacggatgcacatttccacccatcaccatttgagagatctttcactgctgttagtcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65942" stop="63654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65642" g_stop="65557" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65556" i_stop="64424" i_length="1133">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.674" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64423" g_stop="63954" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="556" r_length="469" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U583272" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65642" e_stop="65557"/>
          <exon e_start="64423" e_stop="63954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTCTTAGAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAA-GAAAAAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATCGTAAGTTTCTTCTTCTTTTTTTTCATGATCTTTTTGTTGTTTATTGTTTGATTTTGCCTGAGAATTAGTTAGTTGTGATTTTCATCATTTTTTTTTGGGATAATTCTGTTGTAGTTCTTCAGATTTGGTTGTAATGCTAACGTAAATGGTTGTGTGAGAGGAAATTCTATATGCTTGAGCTGAAATTGGAACTTTTTACTGTTCATTTTGCCCTTGTTTAGTCAGTTTTGTACAGGATCTTTTGTTTTGGGGTCGAAATTTTTTTAGGTTGAAAAGAAGGAATTCACCTAACCTAATAAAGAAATTCTTTTATGAAATACTTGTAAACAAAAAAAATTTCACGTATACAAAACAACAATGTAATTAGATTTGCTCTAGATGTGTAAATCAACAGAGCTAAGATTTGTTGCCAGTTAATTGTTAGTTTTCTGGTGAACCACTCTAGCTTGTGGTGGGGGTAGGAACAGAGTTGGCAATTGGGTAGGTTGGCTCAAATTTGGGCGGGTCAAAATGGGCCATAATACTAAACGGGTCTAGACCCAATTTAATTTTAGGTTGAATTAAATTTGGATGGGTCAAAACTCAATCCAATCTTGGGTTGGGCCAACATAACAAACGGGTCTATACCTTGGGCTGGGTCAAAACGGGTCAAGTAATGAGTCATAATCCATGCTTAAATTTTTACTGAAGTGTTAATTGTTTTTCTGAAATTTTTAATACATAATAATTTGCATATTTTTATTATGGCTATACGTAATATATCAAAATAAAAATAAAGTCCCTTGAAAATATCTTGACAAGATTTTTCATTAGTCAATTTAGGCTACATATGAATTCAATTTTGAATGAGTTGAGTTGAAATGGATTAAGCTAATAGATGTACGGGTTATTTTAAGTGGGTTGGGCGGGTTAGGCTTAATTATGCCACCCTTGTTTTGAGTCTCCACTAGCAATTGCTCGAGTATAAGGTTTTATATTTTATGTTCTTTACTGAGGTTTGCTTAGTCACCTAAATGTTGCTTTTCAGTTTCCATAGGAAAATTTTATTAGATGGTTTTTGTCCTTCGAAACAAACAATTATATTCCATGATCCACCCACCAATCTTGACGGATCTTGTTTATCAAGTCTGCAGAGCATCCGGGGCAAGGCGAGTGGGGTGTGGATATCTTCTCAGAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTGGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGTCTAACTGGGCTGACACACATTTGCGACAAAAACTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCGACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAAGGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</genome_strand>
        <mrna_strand>GAAAAAGTCTCATAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAAGGGAAGAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCGGAGCAAGGCGAGTGGGGTGTGGATATCTTCTC-GAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTTGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGACTAACTGGGCTGACACACATTTGCGACAAAAATTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCAACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAACGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577328" ref_strand="+" ref_description="SGN-U577328 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaatccagccataacaaccaacttcaaattgcgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatgtcttgtgcgattggcttattattgtcatgtgatatttgtatcggtgaattacttgctgccttactatcacattgcttgtggttgtttgttttctcttggttcaaatcgaaaaaggcaagtatagacttgggaattcttccgctgtgatcctgtcaggcattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="68594" stop="67414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68431" g_stop="67714" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="730" r_length="715" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U577328" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68431" e_stop="67714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGGTTATGGGTCTTTTTTCCCTTCCTATATGGATAAATAAAAGCCCAATTTGGACCAACTCATTTTTGTCCATAATCCCATTCTTATAAGGCAAATATAAGCCTATTTTAGGTCTTATTTTCAGATTTTTTAGAGAGAGTTTTTTAGTAGCCAAAAAGAGAGAAAAAGAGCAGATTTTCGCAGTC-AAATTTCAGCCATAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTATCCGATTGAGCTGATTTTTGGACAGCATATTATCCTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCATCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTGGTGATTTTGTTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACAC-TTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCAAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</genome_strand>
        <mrna_strand>TGTTGGGTTATGGACCTTTT-TCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTG-TTTTTTCAGCAGCCAAAAAGAGAG--AAAGAG-AGATTTTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATGTCTTGTGCGATTGGCTTATTATTGTCATGTGATATTTGTATCGGTGAATTACTTGCTGCCTTACTATCACATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAAGGCAAGTATAGACTTGGGAATTCTTCCGCTGTGATCCTGTCAGGCATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603719" ref_strand="+" ref_description="SGN-U603719 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gtactccagtacatccaggttgcctctttcagccaagaggaggaaacttcccaatgttggtgactcagtccacgttccttcgcttaacaagcaagctttagtcctgaaagtcgatccttctagagaagagcttttggtacaagctggtaacatgaagcttaagcttaaattaacagatgtattgacctgaaaggtgcctgcgccaggtaggtttttcattatctccgtcctgcagtgagaaggtgcccttgggaatctgggacgcatttgaaaccgcctctcgccacctgcaattggtatgacgggacagttaaacttgctaaacatgaagtaagaatggtcgttggtatatttccttactatcacgttttataataaattagtgcaatgagctcgggatatatcgtatagcctgagcatatatccagttacccgggatgcatctcatgctatttgactaggtactctcacaactgacatctagcttgcccataaggaattgtactcagttttaagctacaccgctttcacgatgttatgggtttttttaaaaggatgcctcgaagagaaggttccatcagaaaatatgcacaatgttgaccagctagctataattttcagtgaagtgcatggggtcatatgcaagggagtgtatcagtccaaacatgagacctctttgtcctgcgggctatactaaaattatgggaaacttttgattgccctcgttcaggtacacttgtatttatttgagcttgctggatttgattaaagtcaactactagattctggatgacatcagtttatttgaacctaggtgatgccttgattggagtgtacttattaaatagcttcgttgtgtacaaaacgtacagattttatacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80539" stop="78905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80240" g_stop="80209" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80208" i_stop="80059" i_length="150">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80058" g_stop="79205" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="885" r_length="853" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U603719" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80240" e_stop="80209"/>
          <exon e_start="80058" e_stop="79205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCCAGTACATCCAGGTTGCCTCTTTCAGGTAACATAATTTCTTTCTTCTTTCTTTTATGTGATGATCATTATTGCTTGTCAACGGACAATGGTTTGCTACCATCTATTATATTTTCTTGTTTTACATGAATCAAAATATCCACTATTGGTTGCAATGATCTGTTTTGCCTATATACAGCCAAGAGGAGGAAACTTCCCAATGTTGGTGACTCAGTCCACGTTCCTTCGCTTAACAAGCAAGCTTTAGTCCTGAAAGTCGATCCTTCTAGAGAAGAGCTTTTGGTACAAGCTGGTAACATGAAGCTTAAGCTTAAATTAACAGATGTATTGACCTGAAAGGTGCCTGCGCCAGGTAGGTTTTTCATTATCTCCGTCCTGCAGTGAGAAGGTGCCCTTGGGAATCTGGGACGCATTTGAAACCGCCTCTCGCCACCTGCAATTGGTATGACGGGACAGTTAAACTTGCTAAACATGAAGTAAGAATGGTCGTTGGTATATTTCCTTACTATCACGTTTTATAATAAATTAGTGCAATGAGCTCGGGATATATCGTATAGCCTGAGCATATATCCAGTTACCCGGGATGCATCTCATGCTATTTGACTAGGTACTCTCACAACTGACATCTAGCTTGCCCATAAGGAATTGTACTCAGTTTTAAGCTACACCGCTTTCACGATGTTATGGGTTTTTTTAAAAGGATGCCTCGAAGAGAAGGTTCCATCAGAAAATATGCACAATGTTGACCAGCTAGCTATAATTTTCAGTGAAGTGCATGGGGTCATATGCAAGGGAGTGTATCAGTCCAAACATGAGACCTCTTTGTCCTGCGGGCTATACTAAAATTATGGGAAACTTTTGATTGCCCTCGTTCAGGTACACTTGTATTTATTTGAGCTTGCTGGATTTGATTAAAGTCAACTACTAGATTCTGGATGACATCAGTTTATTTGAACTAGGTTGATGCCTTGATTGGAGTGTACTTATTAAATAGCTTCGTTGTGTACAAAAACGTACAGATTTTATACTTCT</genome_strand>
        <mrna_strand>GTACTCCAGTACATCCAGGTTGCCTCTTTCAG......................................................................................................................................................CCAAGAGGAGGAAACTTCCCAATGTTGGTGACTCAGTCCACGTTCCTTCGCTTAACAAGCAAGCTTTAGTCCTGAAAGTCGATCCTTCTAGAGAAGAGCTTTTGGTACAAGCTGGTAACATGAAGCTTAAGCTTAAATTAACAGATGTATTGACCTGAAAGGTGCCTGCGCCAGGTAGGTTTTTCATTATCTCCGTCCTGCAGTGAGAAGGTGCCCTTGGGAATCTGGGACGCATTTGAAACCGCCTCTCGCCACCTGCAATTGGTATGACGGGACAGTTAAACTTGCTAAACATGAAGTAAGAATGGTCGTTGGTATATTTCCTTACTATCACGTTTTATAATAAATTAGTGCAATGAGCTCGGGATATATCGTATAGCCTGAGCATATATCCAGTTACCCGGGATGCATCTCATGCTATTTGACTAGGTACTCTCACAACTGACATCTAGCTTGCCCATAAGGAATTGTACTCAGTTTTAAGCTACACCGCTTTCACGATGTTATGGGTTTTTTTAAAAGGATGCCTCGAAGAGAAGGTTCCATCAGAAAATATGCACAATGTTGACCAGCTAGCTATAATTTTCAGTGAAGTGCATGGGGTCATATGCAAGGGAGTGTATCAGTCCAAACATGAGACCTCTTTGTCCTGCGGGCTATACTAAAATTATGGGAAACTTTTGATTGCCCTCGTTCAGGTACACTTGTATTTATTTGAGCTTGCTGGATTTGATTAAAGTCAACTACTAGATTCTGGATGACATCAGTTTATTTGAACCTAGGTGATGCCTTGATTGGAGTGTACTTATTAAATAGCTTCGTTGTGTAC-AAAACGTACAGATTTTATACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575075" ref_strand="+" ref_description="SGN-U575075 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15239546|ref|NP_200220.1| (e_value=9e-48) DNA mismatch repair MutS family [Arabidopsis thaliana]; (*ATH) AT5G54090.1 (e_value=8e-50) | Symbol: None | DNA mismatch repair MutS family protein, low similarity to SP:Q56239 DNA mismatch repair protein mutS {Thermus aquaticus; contains Pfam profile PF00488: MutS domain V | chr5:21965109-21969776 REVERSE | Aliases: MJP23.7, MJP23_7; (*SWP) sp|P73625|MUTS2_SYNY3 (e_value=1e-27) MutS2 protein OS=Synechocystis sp. (strain PCC 6803) GN=mutSB; ">
      <seq>caggctttgttgactatagctacaacacatcatggagaacttaaaacccttaaatacagcaatcatgcatttgaaaatgcatgtatggagttcgatgaaatgaagttgaaaccaacttttaggattctttggggaataccaggacggtctaatgcaatcaatatagccgaaaggctcgggatgcctgatgccattgtgcataaggctcgtgaactttatggagctgctagtgcagaaatcaatgaggtcatacttgacatggagagatttaagcagaactatcatgagcaagttcgtgagtcacagcgtcttcttaagctcactaaaggcctccatcataagttgcttattgccagaaaaaatgtgaaagaacacagcattaatcaaagattcagaaaggaacaggaaatatttgaagcagctgcagtagcacgatcttccattcaaaggagagcacgacaatatcgtgcaatttctagtcaaccatcccagaaaatattgggaagtaatggacccacatcaactatgaaaactgaagctaaagaggaaaaaagtaaaatttcagaagcaactcctgctgtgtactactccagtacatccaggttgcctctttcagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84440" stop="79909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84141" g_stop="84083" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84082" i_stop="84000" i_length="83">
            <donor d_prob="0.556" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83999" g_stop="83917" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="142" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83916" i_stop="83023" i_length="894">
            <donor d_prob="0.137" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83022" g_stop="82919" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="246" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82918" i_stop="81361" i_length="1558">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81360" g_stop="81290" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="317" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81289" i_stop="80508" i_length="782">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80507" g_stop="80209" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="616" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U575075" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84141" e_stop="84083"/>
          <exon e_start="83999" e_stop="83917"/>
          <exon e_start="83022" e_stop="82919"/>
          <exon e_start="81360" e_stop="81290"/>
          <exon e_start="80507" e_stop="80209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAATACAGGTGCTCAATGCTAAGATGGAACTTTTATATGAGACAAAAGGCTTACCTTCTCTAACATCATGGTGCTACAATGTACTTTACAGCAATCATGCATTTGAAAATGCATGTATGGAGTTCGATGAAATGAAGTTGAAACCAACTTTTAGGATTCTTTGGGGAATACCAGGTTGTCCTTGTATCCATGTGGTAGTTTCTTGATTAGCTTGGAATTTCTTATATGACTGATCATAGGATGTCATGTTCCTTCTTGTGGCAAGAAGAAGAGAAGAAATGATACTTCTTACTTTGTCTTAAAAAGAAAAAAATAACCTCTTTACTCCCAGATCAAATATTTCAGGGCACAATCTCAATGTCACAAAATATTTTTGAAATGCAGTTTTCCTATTTATCATACTTCTCAAGACCTTTACACTTTCAATCATTACCAGATATTCCTCAGATAACCTTTTTTAGCTCATCATTGAGATAGTACCAAGTAAAAGTGTAAAACCATGGTGTACACTATGATTTAGTAAATTACCATGAGTTTTGGGATTGCACAATTCTGTTCTAAGTGCAGTCTGTCTATAATAAGTTGTTTATTCTGGTTCAAGTTTACCTTGCATTATCAGATACGCAAATTCTCATTCCGTTTTTAAAAACTGGACCTACTTAGTAGTTGCGGAGTCGAGAGCTTTCTTGTTTCAGTGTTAATTTTTTAATTGTTTCTTGTATTTTGGCCTCTACCATATGTGTTCGAGATTTCTTCTTATGCAGTTTCCTCATCTGCATAATTCAATTTAATAGATATTTGAACCGGGATTGGGTCAAGCGGATGTACTCATTATTCGGTGACCTTCTTACTTGACCGGGCAAAAGGGGCTGGGGTCCAATGACGAGAAATCAAGGATAATTGTATATTATAATCCATTGACAAATTTCAGAGGATATTCTCTAAAGATGGCACAATTCAAACTTACTTTAGATAGTTTTTGATTCTTTGATGTCTAATTATCATGAGGTGATCGTATCATTGATTTTTTCGGTAGCATCTCTGATTTACAGACTTCTACAACTGCAGGACGGTCTAATGCAATCAATATAGCCGAAAGGCTCGGGATGCCTGATGCCATTGTGCATAAGGCTCGTGAACTTTATGGAGCTGCTAGTGCAGAAATCAATGAGGTACTTCCATATCATACCATTAACTTCGGTATTCAGGATGTAGATACTTGTAATTGATGAAAGGTTTGCATGGCATGTTTATAGTTAACCCTATATTGCTACTGTGCATCCTTTAATTTTTATTGAGAAATACATAATTTGCTTTGTCCTAAAAAGTCATTTACACACCTTAACTTTACGGGAAGCCTCTTACCCCTTACTATTGTCTAAAGTGATTCTAATACCTCCTTGAATATAAAGAACAAGTCATGTGTTGGGTCATGTTTTGCACGTGAACCACATGTCAGTTGCTGCTTCATTTTATTTTTTCACTGCTTTTCCTTCTTTTGTTTCCTTCTTTTTTGAGCAGCTTATTACAAAATGAGTCCAAAGTAAGTGATCTTCTCTTTTACTGCCAAACCTTTCGCCACTGCCAAATTATTCACCACTCAAATTGAAAACAACATTTAGTTATTTGGATTATCATATGATTTCAAAAGCAGATTAGCGTAAAGATCAAACCCCAGTCGATCATTTCCTTATCTTGCTTATTGAGTAGTTATTTCGTATCGTCAGAGTAAAGCCTTGACGGAACCAGAGTCACAAATACCAGCATAACTGACTGTAATACTAGAACCAGGGACTGGAAAAAGCTCCTGCTTGGGGTTCCGAAACGTACTCAATGTCCTGATATTGGGACCCAAAACAGCTGTCATTTTTCTTGGCACCATAAAACCTGATACTTCTGATCCAAAAAGGATACAGAACCCATCTTGTCGGAAAAAATGCCACCCAGCAAAAAAGATTTGCTGCTGGCCAGAGTTTAAAAAGGAGATATATATGACTGAAGGTGGAAGTGAAACGTGTGACGTAGTGAAGAGAATGAAGAGGCAAGGTAGTGGCTGTAATTTTGAAATGGTGGTCATTTCGAGTTTTATTTTTAAAGAAAGCTGGTACAAGGAGATGGAAAAAAATAAGACAGTAAAGAATAAGTCATGATTTTTAAAAAAATAATAAATTTGTATAATATCCAATTGAAAAGAAACACAAGTACATTTTTAGTCTGTTTTTAATGTTCTTTTTCCTTTCGCGTGCATATAGGAAAGAAAAACAATTTTTTGCCACGTCGATTCTCAGGGGGTGGTTAATACGTAATACTTTGAACAAGAATAGCGCTGTGATAGGTCGCCCGTAAAGTTGAAGTGGGTAAATGATTTTTCTAGACAAGATGGATATAATTCCTATTTTTATTGAATAGATTGCTTACCAAATCCCTGGATTTATTGCCACTTCATAGAAACATATACACCAAGAAGTTTGCTGACCTGTAATTAGCTTCTGTTGATTGTAGTTTCATGAGTAATTTCAATTGGTTCTCGAAAACAGAAGTTCCTTTCTCATCATATGCTCTTGTTAGAATAATGCGCAAGAAAAGTATTTACTTCAAACACAATAATAAGTCATTATGACAACAAATTTGTGCATCTGAACATTGCACGAATCTGATTTTCTTAAGCATTTTAATTTTTATTAATTAGCAGTTGCTTTTCTAAGACTTTTTGCCAACATTTTAATGCAGGTCATACTTGACATGGAGAGATTTAAGCAGAACTATCATGAGCAAGTTCGTGAGTCACAGCGTCTTCTTAAGTGAGGATCCTGTGTTACCTTTGCTGATTCCATATACCCTCAGTAATCACCAAAATAGATCTATTTTCCCTTATGCAGTAGTTTTGGTCGTTGAAACTGTTTCAAAATTGATTTTGTTGCATTATAGATCTCAATCTTCTCGTTGTTGATAGTTGTTTAGCAAAGGGATCTGATCAAACCAAATCAAGAAGCAACAAGTTAAAAATGGAAATAAATAACGGCGCTCTATGGCTATCAGATGCCTCATCCTAGTTACTGAGATAGCCTAATACTAGTTGGCCTCTATCTGAACCTAAGAACCTAGAGTGAGAGTGTGTGTATGGATAGAGAAAAAGAAAAGAAAAGAAAAGGAAAGATATGGGGTAGCAGATGGTTGTTGAAATATGGTAACTAAAGTAACTCTCAGCTGCAAAAGCAGAGAAGTAGTGACAAGTCTGGCTGGTCTGCAGAAGCAGAGAGCAAAACATGAAAGTTATGGTAGTGAGAGGGAGCAGTAGTAATTGGAATGTTCAGACTGGTGGCTGTTTGATAGAAAAGATTTCAAGTTGAGCTTGACTTTTGATCTATGTTATATATGCTGATGGTGGCTGAAAAAATTTTGTGAAAGCAGTTCTAATGAATACTATTACCAGAAATGCTGTTCATAAAAGAAATTACCAGAAGATTTCACATTTCATTAGGGATTCTTTTTCCCTAGGCAGCCTTTTGCTTTTTTTTCTTGCAGTAAACTAACTATCAAAAATCTCACGTCGTGTGCATTTGTTCTGTGCCTTTTGATTTAGGCTCACTAAAGGCCTCCATCATAAGTTGCTTATTGCCAGAAAAAATGTGAAAGAACACAGCATTAATCAAAGATTCAGAAAGGAACAGGAAATATTTGAAGCAGCTGCAGTAGCACGATCTTCCATTCAAAGGAGAGCACGACAATATCGTGCAATTTCTAGTCAACCATCCCAGAAAATATTGGGAAGTAATGGACCCACATCAACTATGAAAACTGAAGCTAAAGAGGAAAAAAGTAAAATTTCAGAAGCAACTCCTGCTGTGTACTACTCCAGTACATCCAGGTTGCCTCTTTCAG</genome_strand>
        <mrna_strand>CAGGCTTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAATACAG...................................................................................CAATCATGCATTTGAAAATGCATGTATGGAGTTCGATGAAATGAAGTTGAAACCAACTTTTAGGATTCTTTGGGGAATACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCTAATGCAATCAATATAGCCGAAAGGCTCGGGATGCCTGATGCCATTGTGCATAAGGCTCGTGAACTTTATGGAGCTGCTAGTGCAGAAATCAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATACTTGACATGGAGAGATTTAAGCAGAACTATCATGAGCAAGTTCGTGAGTCACAGCGTCTTCTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACTAAAGGCCTCCATCATAAGTTGCTTATTGCCAGAAAAAATGTGAAAGAACACAGCATTAATCAAAGATTCAGAAAGGAACAGGAAATATTTGAAGCAGCTGCAGTAGCACGATCTTCCATTCAAAGGAGAGCACGACAATATCGTGCAATTTCTAGTCAACCATCCCAGAAAATATTGGGAAGTAATGGACCCACATCAACTATGAAAACTGAAGCTAAAGAGGAAAAAAGTAAAATTTCAGAAGCAACTCCTGCTGTGTACTACTCCAGTACATCCAGGTTGCCTCTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573422" ref_strand="+" ref_description="SGN-U573422 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157355172|emb|CAO48548.1| (e_value=1e-129) unnamed; (*ATH) AT5G54090.1 (e_value=2e-84) | Symbol: None | DNA mismatch repair MutS family protein, low similarity to SP:Q56239 DNA mismatch repair protein mutS {Thermus aquaticus; contains Pfam profile PF00488: MutS domain V | chr5:21965109-21969776 REVERSE | Aliases: MJP23.7, MJP23_7; (*SWP) sp|P73625|MUTS2_SYNY3 (e_value=1e-13) MutS2 protein OS=Synechocystis sp. (strain PCC 6803) GN=mutSB; ">
      <seq>gggcttgtctcaatcttactgaagtctatcccgtttcccgcaatctctctccccgccactggtgcttttgtcactctctctgcaaatcatctgttccaattatccattttcaaatgcatgatgctcctctcagtctcactgcttcccaattcatcatcgtcattcgccaccgtagcatttgctttcccaaaagttcccggcggtttcaggcagtccattcgaatcaaggtccatgccttcctaaacaaaccactggaatcgagctccgatcaaccatcggtgattctagacagtctcagggtcctcgaatgggacaaattatgcgattcggtcgctgccttcgccggtacttccttaggcaaagaagctctcaaggaacaactaggttatctgaatcaaacatttgaagagagtcttggactcttagaggaaaccaatgcggctgtggagatgaataagtacggtgccatggtggattttaatggcattgatattgagctggttaaaacggccatacgggttgcacgccatggttttcctgtcagtgggactgaagcattgaatgttgtagcactactgcagtttgtggaaatgctgcaggcaaatgtcaaagctgcagtcaagcaagacgcagaatggtatcagcgttttatgcctctcacagaaatgattatggaactaaccataagcaaatcactagtgaggttcatacaacaactagttgatgaagatggttctgtcaaggattctgcgagctctgctttgaaacaatctcgtgatcaagttcgccttcttgaaagaaagttataccagttgatggaaaacataatcaggaacggcatggaagaagcatctgctgtgatggtgcattatatcaggatttaatcagcgaacgagctttgaggggctactgttatccagtgcttcaggtactggaagtgttctcgaacctctctcagcagttccgttgaatgatgcactccagcaagctaaggcatctgtgtcaaaggctgaggttgatgtgctcctgaagataacacagaagatgcaagaagaaattgattatattgaaagcattttcagcatgatggttaggctggatgtgatcaacgctagagcacgatatggtcttgcatttggaggtgcttgtcctgatttatttttgcaacaagaacaggatagctttgtagctactgatgcttcactggacgcaagaacctcagtggcattgcatcctacacggaagaaatggacaatgtatctgccaaaagcttatcatcctttattacttcaaaagcatcagcaggctctacagaaggccataaaagatgtcaagaatgccaatgcggaaattaggaggaggaagcagcagggaggaaactttactctgagaaaagaaactgatttgactttacagtccttggaagcaaaggttgctaagttgaaagaggaaccacctgttcctgttgacctatatgttgcgcacaacactcgagttttggttataactggtcctaatactgggggtaaaaccatttgcttgaagactgtgggtttggctgctttgatggcaaaatccggtcagcacaagtactatatatttatacattatactttgttcatcaagtcaactcacaaatgaaaactttccttgtacctcaatatatctactagacattatatattaaaacatcaaaagtcatcagttaccactatcctatgcaaagaggcaattgagaacctatcaataagttgaaacgtgcttaaatttactttcctgacattcacatccattttcatttctatgccttgatatcatctattgttgaattaggattcccgccaaattattaaatcggtttttcctggtcatgtttcttgttccttcataaatcatatgctacttatacaaacacaaactcatcctccattacgacctgcaacttcacaagttttttgaaatttttttcgtgaagatggtgtcaaggccaactaacacgcctcagcctttccactaggtacatgcatcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94485" stop="86521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94186" g_stop="93812" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93624" i_length="188">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93623" g_stop="93498" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="501" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93497" i_stop="93331" i_length="167">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93163" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="669" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93162" i_stop="93080" i_length="83">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93079" g_stop="92996" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="753" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92995" i_stop="92645" i_length="351">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92644" g_stop="92594" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="804" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92593" i_stop="91321" i_length="1273">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91320" g_stop="91264" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="861" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91263" i_stop="91050" i_length="214">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91049" g_stop="90990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="862" r_stop="921" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90989" i_stop="89877" i_length="1113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89876" g_stop="89753" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="922" r_stop="1045" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89752" i_stop="89674" i_length="79">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89673" g_stop="89614" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1046" r_stop="1105" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="89613" i_stop="88900" i_length="714">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="88899" g_stop="88657" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1106" r_stop="1348" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="88656" i_stop="87597" i_length="1060">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="87596" g_stop="87513" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1349" r_stop="1432" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="87512" i_stop="87422" i_length="91">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="87421" g_stop="86821" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1433" r_stop="2033" r_length="601" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-U573422" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2033</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94186" e_stop="93812"/>
          <exon e_start="93623" e_stop="93498"/>
          <exon e_start="93330" e_stop="93163"/>
          <exon e_start="93079" e_stop="92996"/>
          <exon e_start="92644" e_stop="92594"/>
          <exon e_start="91320" e_stop="91264"/>
          <exon e_start="91049" e_stop="90990"/>
          <exon e_start="89876" e_stop="89753"/>
          <exon e_start="89673" e_stop="89614"/>
          <exon e_start="88899" e_stop="88657"/>
          <exon e_start="87596" e_stop="87513"/>
          <exon e_start="87421" e_stop="86821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGTGTCTCAATCTTACTGAAGTCTATCCCGTTTCCCGCAATCTCTCTCCCCGCCACTGGTGCTTTTGTCACTCTCTCTGCAAATCATCTGTTCCAATTATCCATTTTCAAATGCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAGGTTAACTCTTCGTGTACTTACCTTTTTTCACTTTTCCTTCTGTTTGATTGAAGAATGAACTAATTACTTTAGCTCAGTGTATGTGAATGTGTGTTTGCATATGCATGTGTATAGTATATGTATAGGCTTGTGTATTTATGTGTATATACTTAAAAATACAGGATTATCAAAGGAATTGTTTGGTGCAGGAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTGGTAGGTCCTCAACTTCGTTTGTTTATCCTGTGGTGTACTGGTTTTGTTTGAAACTTTAGTTTGGTTCTTTGGAAATTGAACAATTTGGGTAAACTCATTGTTGTTCAAGTTCCTGCTTAAATTGCGAGTGGTGCAGAATGATGTTGTCTGTTCCTCTATTGTTGAAGGTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATGGTAATAAAATTCTGGCGACAATGAACTTTTCAGCAATCATATATGGTGCGTTTGTCTCCAATCATTTTCTATTTTTACTGCAGATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCGGTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTCTTTCAAGCTTCTCAGAGGTCATGACACATGTCACTTCCTTGACATTTTCTTCTGCATCTTCTATACACGTGCATTAACTCTACTATTTGCTGTGGTTATATTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTTTTTTCAAGCTTCTCATAGGTCGTAACACAAGTCACTTCCTTGACATTTTCTTCTGCATCTTCTGTACACATGCATTGACTCTACTATTTGCTGTGGTTATATTCGACTTTATGAGTCTTATTAATATTACTTTATGGTTTTAGAGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAGGTAGACTTCATTCTTCTTCCTAATTGACTGTACTTCAGCAAATTTGGTGGTTATTACTTTTCAGAAACTTCTTTCCCTAGAAAATATCTTCAATATAATAATTTGTAATTTTTTATTTGCTGGTGTATATTTATGCTCTTTCCTTCATCTGTTATTTGTCTGTTCATAAGTTTGATAAAATCAAAGGCTAGTTTTTTACTTTATTATCATGTTGTGTGCATCCTCTTGAAATGATGGGCCGGACACTGTTATGTTGTTAATTCTTTAACTGTTATGAAAGAAAGTCAGCAGATCATGTAGTTATGTCTGAGCTGACTGCCTTAATATTTGACAGACAATGGACACTGAAGGTCATAAATCCATTTTATCAACAGCCTGTAGGTTGTTACCAAGGCTTATACCTTTTAAAATCTAGATTTCAGTTTGAATTGTTATCAAATTCATACAACTTGGCAAATATATTTGGCAAACATCCCAAGTTCCCAACTACTAGAAAAAACTAGCATTTGGAATTTTTTTATAAATTTTAAAATTACCCCAAACTTTTATATTTTGTACGGAACACCCATCATTTGTTAAGTCCAAATAATATTTATCTACCTCCTCCGGAAAAGTTTGACTTATAAGTTGAGGGACAAGATTGAGAAAAAAGAACAACTTGTTTTTAATGAGTTATAATTCCAATTGAATCAGTGACGAGTTTGATTATGCAATTAATGTATTGCTCTCGCCCATATTGTTATTTTGTTGTTGTTCATAGTTATCAATTATGTTATAAGGTTATTTTTAATGGAACATGTTCATTATAAAATTATAATACAAACTTATGGGTATAAATCATATTTTTTTGAAATTGTCAAATATTCTTGGGAAAATTTGTGACCAAACGCATGGTAAAACTTCACCAGAACTTCACTCAAAAATAACTTGCCAAGAATATTTGGAAATTTGTGACTGAACACTAGCTTAATACTTCCTAGGTTTTAATCTATTGTCTCTGCGCATGCAGTAGGCACATTAATAAAGTTTGATTGTTCTTTGGCACGAGAACTTTTAGAAAATGATACAAGGACTGCAGGAATTATCTATTTGGATATCTTTAATTAAAGCAGCACTTCTTACAAATGTCAGGAACCATTTGCCTCTTTGTTATATTTCTGTTAGGGGAATTCCCACATTGCTGGCTGGGTGTGAGAATGACTATGCTTTTGATGTGTCCTGCACCACACTCCCTGCTTGGACATTAACGCATTGCATTCTCTTGTATCTTCAGTTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTGGTAATCTGTCCTTAGTCCTAATCTTTAGTTTCCATCTGTACAACCTTAAGTCACTTTGATAACCAACAGGTTTTCCACATATTAATAATATTATTAAGAATCTTAAGCCCTGAATGTGGTAATGAAATAAAACAATTCTCTACCTTTCTGGCTTTACCATAGCACCTTGTGAACCTGATATTCTTACTCAGGAAGTGAGTGAAATTGATGGCAGATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAGGTTTGTTAATATCTTAAAGTCTTTAACTTATTGGGGCTTATGTAAATAACTTTGTATAATGTTTGTACATTTTGTTTTATGTCATTTGCTGTCTCCATCTCGAAAGCTCTGTATAGGTAATGAACTTGCTAAGCAGAAGTTTGTGACATCATAAATTAGGAAATGACAAGAATACTGTTTTGAGTAATGCTCTGCTGCTGAAATTGAGTTGGAATTGTTCATTTCTTTCCTGGAATTGGAATTCCTCAGATATTGGTTCAGTAATTCTACTTTTGAGGTTGATTTTTTGAAAAATTAATACAGGTGCTTATAAACAAGACTTCTCAAAACCCTCTGGTATGGCATTAGTGAATAGTTCTAATCTTCTGAACTACTGTTTGATAACTTGTAAGATTTTGTCGCACAAAAACTGAATAAATCCCTTTTACAAGTTGAAGACAAACAATTAGGGAACTCTTGGAATGGCATTCAATCAGCTATATAAAATATGATGCTGTTAAAAAAAGTTCACAAATTTGATTGTCTTACATTCTCCACAAGTGCACCAAAAATAGCGTGATATTTCCAGTAGGGGATGTGATACTACTTTGTCATGATCCATTTCTTCCACTCCCAATAGTTGTGGGCTTACTCTTTTTCAAAAGTTAATGCTATTGATGTAAAAAAAAGATTAAGCAACATAGAGCTGACACAACTACTAGTAAAAGGGGAGAAAGTTGACTTAGCCCTGACTTTCTTTACAAGAGGTCCTATGAACCATAACAGGGCTTCAGAACCTCATTGATGTAAAAACAAACAGCTTAAAAAAGTGTGGGTGATTATATCCAAAATTGTTGTAGGATTTCCGTAAGACGTGGCCCTTGGGCTTAACTGAACCCCAGAAGCTAGCTCATGAGGGAGAATTCCCAAGTCTATTTAAGGAGACTACTAGCGCATTTCCCAACTAATGTGGGACTGTAAATAAGCTATTGTTCCCCTTAGTTAAGCCTAATGTTATACAAGTTTGGTGAAAAAAAATGCTGCTAGATCACCATGAATAAGCTTGACATTATTCAGGTCATTAATGCTTTATAGTATTATTCATCATCTCTGAGCAGTGATAGTCAATTTCAGTGCTTCAGGTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAGGTTTGTTTAACTTATGCCCCCTCCCCCCCTTGTGTTGTCATAAACGGAAACTAACCAGTTGTTTTTTATTTCTACGCAGATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTGGTAGGTTCTATTATTTTAAATTATAACTTTCTTGTACCTCTGATTATTTCTTTTCTAATTTTGTTTCTTCTAATATTTGTATGTTATTTAAAAGACAGGATCCATGTGTTCATTTTTACAATAGATGATAACCAAAATGAGCTTCACATTGGCGGGAATAGATTTTGAAATGGGTTTATAAGGCTCTGGATCCTACACTACTAACAACTTCAGCTTAAGTGTGTTTGTTTAGCGAGAATGAGATCTAGTTGGGTGAACAAGTATGGAATACTATAAGTTGTTTAGTGGCTAGCGTTGGGGCACTCCAGAATGATCCTGTTATACCTTATTGATTGGAGTACTAATTATTGGAGCAGCTGTGCCATGCCAATTGTGACTGTTGCGAATGTCATAATTGACTGCTAACATCTGAATAATTAAAAGTTTCTGCAAATATTTATCGTTTCACTCTCTTTATCAATAAAACATTTATGTTCCGCTTTGTTCACGTGTTTATTGTTTCTCCAACTCAGAGCCTTAACAATTTCAAAATTTGTTTGGCCTTACAATCTGAGGCCTACTACAGTTTAATGCTCTTTGGTCTATTATGTCAAGTAGAACATTGTTCACAAGTTGACCATTTAGTGGGATTTATTTGATGTCACGTATATTAAGTGTTTAATTTATTTTGTTACTGATGTTATTCATTTTTCATTGTCATTCCCATATCTACAGATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACAGAAGGCCATAAAAGATGTCAAGAATGCCAATGCGGTAAGTCACTCTCCATATAATTATGCAAATGGAACACGGAAAGCTGTTAGATTCTCCTAGCATTTCAAAAGTTCCCTCTTATAGCCTGTCTTTGAGATATGGACAGATTGCAACATAATCTGGTGGGTACTTGCACCAAGCAATCTCTCTTCAGGATGGTTTTTATTTTATCAAAGAAAAAAGATTATCCATAACTATGAATCTCCTGTCGTTTGAGTTGGAATCTATGAGAGTGCCGAGACTATAGCCGAGTTCCATGAAATATATAAAGCTTTCTATGAAAAGATTCAGTAATTTATCATAATTGTTTTTGTTCTGTTGGAGCTCTTTTTGGATAAAATTAGTTACTTGTATGAGTGGGTAAGATCCTGTTGTAAGTGTTTCCTCTTTTTTATTTTGTAATCTTCACAAAAGGTTTTGTGGGTTTCATATACCTGGTCAGCTCATATGCATGGAAGCTAAATTACTACTATGTATGGGTCAGGTGTGGTTGTGGATTCTTTAAGGGTGGGATATGGCTTTTTAGTAAGCTTGCTCAGTATCTATTCCAATTATTATCTTATAGAGCCACCTTAATACCTTCCTTGACCAATAATTGCAACCTGTGAAGTCGATACTATCTGAGGGTGAGGTTCTTGTGAGAATAGAAGTGGCAAGTGGAAACATTTCTGATTCCTCTTCGTTTTATTCCTTAAATATTGTTTTGATAGAGAACTTTAAGAAAGTTTTGTTGGGACAATAAGTTGTTAGAAACACGTTACTGCTCTCTTTTGGTGAAACAGTTACTGCTGCTGTTAACATCTGGGAATAAGTTTTTATAGGCCTCAGTAGAATCGTAACTCTAGAGATACTGTGACAATGCATCTGATCATAACAGCTTCTAGATTCCATGCTATGTTTGAATAGCCTTTCTTCTCTATTCTATCAGATGCTGGCTCCATTGGTTATATTCTCATAACAATTTTGTGGATTCTCATCATCATGATAACTTTGGGGTGATATGCACCTAATTGAATCACTTTGAGTTCTCTTAAAAATTCAGTTGGTCTTTTGTGTATAGGAAATTAGGAGGAGGAAGCAGCAGGGAGGAAACTTTACTCTGAGAAAAGAAACTGATTTGACTTTACAGTCCTTGGAAGCAAAGGTAATTTTTTGAATTTGATCGCTGGCATTTGATGGTTTATGCAAAATTTCCATTGTAAATGAATGAAGTACTTTTAACCTGTTGACTTCAGGTTGCTAAGTTGAAAGAGGAACCACCTGTTCCTGTTGACCTATATGTTGCGCACAACACTCGAGTTTTGGTTATAACTGGTCCTAATACTGGGGGTAAAACCATTTGCTTGAAGACTGTGGGTTTGGCTGCTTTGATGGCAAAATCCGGTCAGCACAAGTACTATATATTTATACATTATACTTTGTTCATCAAGTCAACTCACAAATGAAAACTTTCCTTGTACCTCAATATATCTACTAGACATTATATATTAAAACATCAAAAGTCATCAGTTACCACTATCCTATGCAAAGAGGCAATTGAGAACCTATCAATAAGTTGAAACGTGCTTAAATTTACTTTCCTGACATTCACATCCATTTTCATTTCTATGCCTTGATATCATCTATTGTTGAATTAGGATTCCCGCCAAATTATTAAATCGGTTTTTCCTGGTCATGTTTCTTGTTCCTTCATAAATCATATGCTACTTATACAAACACAAACTCATCCTCCATTACGACCTGCAACTTCACAAGTTTTTTGAAATTTTTTTCGTGAAGATGGTGTCAAGGCCAACTAACACGCCTCAGCCTTTCCACTAGGTACATGCATCCTTC</genome_strand>
        <mrna_strand>GGGCTTGTCTCAATCTTACTGAAGTCTATCCCGTTTCCCGCAATCTCTCTCCCCGCCACTGGTGCTTTTGTCACTCTCTCTGCAAATCATCTGTTCCAATTATCCATTTTCAAATGCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAG............................................................................................................................................................................................GAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTG.......................................................................................................................................................................GTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATG...................................................................................ATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCG...............................................................................................................................................................................................................................................................................................................................................................AGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTG......................................................................................................................................................................................................................ATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTCAGGTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAG...............................................................................ATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACAGAAGGCCATAAAAGATGTCAAGAATGCCAATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTAGGAGGAGGAAGCAGCAGGGAGGAAACTTTACTCTGAGAAAAGAAACTGATTTGACTTTACAGTCCTTGGAAGCAAAG...........................................................................................GTTGCTAAGTTGAAAGAGGAACCACCTGTTCCTGTTGACCTATATGTTGCGCACAACACTCGAGTTTTGGTTATAACTGGTCCTAATACTGGGGGTAAAACCATTTGCTTGAAGACTGTGGGTTTGGCTGCTTTGATGGCAAAATCCGGTCAGCACAAGTACTATATATTTATACATTATACTTTGTTCATCAAGTCAACTCACAAATGAAAACTTTCCTTGTACCTCAATATATCTACTAGACATTATATATTAAAACATCAAAAGTCATCAGTTACCACTATCCTATGCAAAGAGGCAATTGAGAACCTATCAATAAGTTGAAACGTGCTTAAATTTACTTTCCTGACATTCACATCCATTTTCATTTCTATGCCTTGATATCATCTATTGTTGAATTAGGATTCCCGCCAAATTATTAAATCGGTTTTTCCTGGTCATGTTTCTTGTTCCTTCATAAATCATATGCTACTTATACAAACACAAACTCATCCTCCATTACGACCTGCAACTTCACAAGTTTTTTGAAATTTTTTTCGTGAAGATGGTGTCAAGGCCAACTAACACGCCTCAGCCTTTCCACTAGGTACATGCATCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566104" ref_strand="+" ref_description="SGN-U566104 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157355173|emb|CAO48549.1| (e_value=2e-85) unnamed; (*ATH) AT1G18000.1 (e_value=5e-73) | Symbol: None | expressed protein, contains 11 transmembrane domains; | chr1:6194536-6196222 REVERSE | Aliases: None; ">
      <seq>gttaattaaacttgtcatccaacaaaaacagcaagtttttcaattcatccaatccttgcttccaaagttcccaatttaatccaaattcccaaatttgaggatctatttttctcatctttcatctgtttcaatctgagactctcacaggccaaagcgttatgggagatgaaaatggtttacctaattcatctccgaaccattcaattttcaggtacaattcgccactggttcaggtttgtttgattggattagtatgtttttgttgtccagggatgttcaatgcgctctctggaatgggtggtggtggtcaagtcgaccacacggcgtctaacaacgccaacaccgcactctacacagctttcactatttttgggatattgggtggtggaatttacaacattttaggtccaaaaaagactctgtttattgggtgttcaacttatatattgtatgcgggttctttcctttactacaatcaccacaagcatcaagtgtttgtggtagtggccggcggtctcctcggtgttggcgccggcctactctgggctgcccagggagctattatgacatcttacccgccacatgacaggaagggtacttatatctctatattttggagtattttcaacatgggtggtgttattggtggtcttataccgtttgtatccaactataatagaactaccgcggcctctgttaatgatggtacatatattggatttatgttcttcatggctatcggaacggttctttcattagcgattttgcatcctagtaaggtcattagaaacgatggttcttcgtgtactaatatcaagtactcgagtgtgtctgtggaattaattcaaattctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="98532" stop="99988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98832" g_stop="99688" g_length="857"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U566104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98832" e_stop="99688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTAAACTTGTCATCCAACAAAAACAGCAAGTTTTTCAATTCATCCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTGGGTGTTCAACTTATATATTGTATGCGGGTTCTTTCCTTTACTACAATCACCACAAGCATCAAGTGTTTGTGGTAGTGGCCGGCGGTCTCCTCGGTGTTGGCGCCGGCCTACTCTGGGCTGCCCAGGGAGCTATTATGACATCTTACCCGCCACATGACAGGAAGGGTACTTATATCTCTATATTTTGGAGTATTTTCAACATGGGTGGTGTTATTGGTGGTCTTATACCGTTTGTATCCAACTATAATAGAACTACCGCGGCCTCTGTTAATGATGGTACATATATTGGATTTATGTTCTTCATGGCTATCGGAACGGTTCTTTCATTAGCGATTTTGCATCCTAGTAAGGTCATTAGAAACGATGGTTCTTCGTGTACTAATATCAAGTACTCGAGTGTGTCTGTGGAATTAATTCAAATTCTCAAA</genome_strand>
        <mrna_strand>GTTAATTAAACTTGTCATCCAACAAAAACAGCAAGTTTTTCAATTCATCCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTGGGTGTTCAACTTATATATTGTATGCGGGTTCTTTCCTTTACTACAATCACCACAAGCATCAAGTGTTTGTGGTAGTGGCCGGCGGTCTCCTCGGTGTTGGCGCCGGCCTACTCTGGGCTGCCCAGGGAGCTATTATGACATCTTACCCGCCACATGACAGGAAGGGTACTTATATCTCTATATTTTGGAGTATTTTCAACATGGGTGGTGTTATTGGTGGTCTTATACCGTTTGTATCCAACTATAATAGAACTACCGCGGCCTCTGTTAATGATGGTACATATATTGGATTTATGTTCTTCATGGCTATCGGAACGGTTCTTTCATTAGCGATTTTGCATCCTAGTAAGGTCATTAGAAACGATGGTTCTTCGTGTACTAATATCAAGTACTCGAGTGTGTCTGTGGAATTAATTCAAATTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595757" ref_strand="+" ref_description="SGN-U595757 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355173|emb|CAO48549.1| (e_value=3e-11) unnamed; ">
      <seq>gatttaatccacattcccaaatttgacgatctatttttctcatctttcatctgtttcaatctgagactctcacaggccaaagcgttatgggagatgaaaatggtttacctaattcatctccgaaccattcaattttcaggtacaattccccactggttcaggtttgcttgatcggattagtatgtttttgctggccacggatgttcaatgcgctctctggaatgggtggtggtggtcaaggcgaccacacagggtctaacaacgccaactccgttctctacacaactttgactatctttgggatattgggtggtggactttacaacatttgatgtccaaccatgactctgattattgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="98605" stop="99564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98904" g_stop="99265" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U595757" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98904" e_stop="99265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTGGGTGT</genome_strand>
        <mrna_strand>GATTTAATCCACATTCCCAAATTTGACGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCCCCACTGGTTCAGGTTTGCTTGATCGGATTAGTATGTTTTTGCTGGCCACGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGGCGACCACACAGGGTCTAACAACGCCAACTCCGTTCTCTACACAACTTTGACTATCTTTGGGATATTGGGTGGTGGACTTTACAACATTTGATGTCCAACCATGACTCTGATTATTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566103" ref_strand="+" ref_description="SGN-U566103 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|21536696|gb|AAM61028.1| (e_value=1e-34) unknown [Arabidopsis thaliana]; (*ATH) AT1G18000.1 (e_value=1e-36) | Symbol: None | expressed protein, contains 11 transmembrane domains; | chr1:6194536-6196222 REVERSE | Aliases: None; ">
      <seq>ggttctaaatttgcaggtccattcttgttgtattttagttatggattactcgatgccatgtttcagagcatggtctattgggttataggagccttggcagatgattctgaggttctcagcagatatactggcttctataaaggaatacaaagtgcaggtgcagccgttgcttggcaagtggattcacatactgtcccattcatgaaccagcttatcgcgaattgggcattaacaaccattagttttccattactggtagctcttgtagtgttagctgtgaaggatgacaacaaagatgaagagggagcaactaaggaagcctccattacttcaaaccgcgacattagtactacagtagactaccccaataaggaataaggaatagtttacagaatttataatttagtcattactaccatagtagagtttaaagaactgttctgtaaattgtggactatcaaccacagtgaaatttctttgctaatgtttatttaatcgtcttcattctccagtaaaaaaagaaataaactaataaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="99725" stop="100949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100025" g_stop="100146" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100147" i_stop="100235" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100236" g_stop="100628" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="515" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U566103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100025" e_stop="100146"/>
          <exon e_start="100236" e_stop="100628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTAAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAGGTAAATTTTCGATTTCAATTTATGCTTATGAGATACAGAATTGATTATCAGTATTGGTTAAAATTGGATTTGTTTATCTGTATTCACAGATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTAATCGTCTTCATTCTCCAGTAA</genome_strand>
        <mrna_strand>GGTTCTAAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAG.........................................................................................ATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTAATCGTCTTCATTCTCCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585974" ref_strand="+" ref_description="SGN-U585974 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|116784747|gb|ABK23457.1| (e_value=1e-20) unknown; (*ATH) AT3G61980.1 (e_value=2e-21) | Symbol: None | serine protease inhibitor, Kazal-type family protein, contains Pfam domain PF00050: Kazal-type serine protease inhibitor domain | chr3:22967114-22967858 REVERSE | Aliases: F21F14.150; ">
      <seq>ggaaaaagagatactttacctttgatcatcggaaatccccaaaatttcaattctcgggttttcgatttcttcaactaggttttctgttaaaagagaaaggcgagcttttcttctatattctaagaaaggctcgccggaaaaaaaatttaaacaaatatagtatccatggaatttcttagaatttctgcttttcaatctatcgtcgtgttcctgctcatctctgtcatctacttcccggtcaccgtccgttcagatgaaatcatcccgcttcttttgccttccgaacaagtgaatcaagacatttgccctacgacgccgtctccatcggaatcctgcactattaattgcttccgacccgacccggtctgcggtgttaacggtgtgacgtactggtgtggttgccccgacgcacattgtgctggtgtgcgtgttgtgaaatcagggatctgtgaggtgggaaacggaggttctgctccggtcacgggtcaagcgctattgttgattcacattgtttggcttgtgttacttggtttcgtcggactgtttgggctgctatgatcgatcaggtttcgttgattgcttgatttagggttagacttgataggatgattttttgtataacatacctgtaacttatgtatgtatgaggggacatatacggctagcatgatttcaactgtgtcccttgtttttcttttgttcgattaatacaattttaggagatttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106807" stop="108133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107105" g_stop="107833" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-U585974" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107105" e_stop="107833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTATCTTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTGTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCGTCGGAATCCTGCCCTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTGTGAGGTGGGAAACGGAGGTTCTGCTCCGGTTACGGGTCAAGCGCTATTGTTGATTCACATTGTTTGGCTTGTGTTACTTGGTTTCGTCGGGCTGTTTGGGCTGCTATGATCGATCAGGTTTCGTTGATTGCTTGATTTAGGGTTAGACTTGATAGGATGATTTTTTTTGTATAACATACCTGTAACTTCTGTATGTATGAGGGGA-ATATACGGCTAG-ATGATTTCAACTGTGT-CCTTGTTTTTCTTTTGTTCGATTAATACAATTTTAGGAGATTTAGAT</genome_strand>
        <mrna_strand>GGAAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAATCTATCGTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTTTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCATCGGAATCCTGCACTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTGTGAGGTGGGAAACGGAGGTTCTGCTCCGGTCACGGGTCAAGCGCTATTGTTGATTCACATTGTTTGGCTTGTGTTACTTGGTTTCGTCGGACTGTTTGGGCTGCTATGATCGATCAGGTTTCGTTGATTGCTTGATTTAGGGTTAGACTTGATAGGATGA--TTTTTTGTATAACATACCTGTAACTTATGTATGTATGAGGGGACATATACGGCTAGCATGATTTCAACTGTGTCCCTTGTTTTTCTTTTGTTCGATTAATACAATTTTAGGAGATTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="29843" PGL_stop="29345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29843" e_stop="29345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="29843" e_stop="29345" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29843" stop="29345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAACGATTCAAAAAAAAAAGAATTATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCATGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAACAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAATTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTAAAGTTTGAACATCGATTAAGGTATGGGTTTTCTTCTCTCTTGAATCCTTTCCCAAGAGACCCCTTAAGGTTCAAGATATTCATTCCGAAAAC</gDNA_template>
            <first_frame> C  N  D  S  K  K  K  E  L  Y  K  *  E  *  I  G  I  *  G  H  N  C  P  F  M  F  *  M  N  K  *  I  N  K  *  I  N  K  T  D  L  Y  L  F  I  L  N  V  I  *  L  I  L  E  L  V  S  *  S  K  *  S  S  L  S  H  A  S  *  L  P  L  S  R  S  P  S  S  S  H  Y  F  C  Q  N  I  N  S  F  H  A  *  R  T  N  K  N  F  *  A  K  E  K  V  I  K  T  S  R  L  R  E  V  C  R  E  R  C  T  L  K  *  I  G  S  G  L  E  E  F  S  G  Q  Q  H  *  S  L  N  I  D  *  G  M  G  F  L  L  S  *  I  L  S  Q  E  T  P  *  G  S  R  Y  S  F  R  K  </first_frame>
            <second_frame>  V  T  I  Q  K  K  K  N  Y  I  N  K  N  K  *  V  F  K  G  I  I  V  L  S  C  F  K  *  I  N  K  *  I  S  K  *  I  K  Q  I  C  I  Y  L  F  *  M  L  F  D  *  F  L  N  *  S  P  N  P  N  S  P  L  S  L  T  L  L  N  S  L  S  H  V  L  H  L  P  H  I  I  S  A  K  T  S  T  V  F  M  L  E  E  L  T  K  I  F  K  Q  K  K  K  *  S  K  R  Q  G  *  E  R  F  V  E  R  G  V  R  *  S  E  L  G  V  V  W  R  S  F  P  G  S  N  I  K  V  *  T  S  I  K  V  W  V  F  F  S  L  E  S  F  P  K  R  P  L  K  V  Q  D  I  H  S  E  N </second_frame>
            <third_frame>   *  R  F  K  K  K  R  I  I  *  I  R  I  N  R  Y  L  R  A  *  L  S  F  H  V  L  N  E  *  I  N  K  *  V  N  K  *  N  R  F  V  F  I  Y  F  K  C  Y  L  T  N  S  *  I  S  L  L  I  Q  I  V  L  S  L  S  R  F  L  T  P  S  L  T  F  S  I  F  L  T  L  F  L  P  K  H  Q  Q  F  S  C  L  K  N  *  Q  K  F  L  S  K  R  K  S  N  Q  N  V  K  A  K  R  G  L  S  R  E  V  Y  V  E  V  N  W  E  W  F  G  G  V  F  R  A  A  T  L  K  F  E  H  R  L  R  Y  G  F  S  S  L  L  N  P  F  P  R  D  P  L  R  F  K  I  F  I  P  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29559" stop="29347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKFLSKRKSNQNVKAKRGLSREVYVEVNWEWFGGVFRAATLKFEHRLRYGFSSLLNPFPRDPLRFKIFIPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="32364" PGL_stop="39791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32364" e_stop="32628"/>
            <exon e_start="32698" e_stop="32810"/>
            <exon e_start="34659" e_stop="34919"/>
            <exon e_start="35047" e_stop="35151"/>
            <exon e_start="36011" e_stop="36076"/>
            <exon e_start="36204" e_stop="36425"/>
            <exon e_start="37388" e_stop="37942"/>
            <exon e_start="38292" e_stop="38888"/>
            <exon e_start="39092" e_stop="39268"/>
            <exon e_start="39344" e_stop="39791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.406" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.655" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="32364" e_stop="32628" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32629" i_stop="32697" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32698" e_stop="32810" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34659" e_stop="34919" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.406">
            <gDNA_intron_boundary i_start="34920" i_stop="35046" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35047" e_stop="35151" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.921">
            <gDNA_intron_boundary i_start="35152" i_stop="36010" i_length="859"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36011" e_stop="36076" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36077" i_stop="36203" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36204" e_stop="36425" e_length="222"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36426" i_stop="37387" i_length="962"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37388" e_stop="37942" e_length="555"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.655">
            <gDNA_intron_boundary i_start="37943" i_stop="38291" i_length="349"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38292" e_stop="38888" e_length="597"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39092" e_stop="39268" e_length="177"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.990">
            <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="39344" e_stop="39791" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32364" stop="32628"/>
              <exon start="32698" stop="32810"/>
              <exon start="34659" stop="34919"/>
              <exon start="35047" stop="35151"/>
              <exon start="36011" stop="36076"/>
              <exon start="36204" stop="36425"/>
              <exon start="37388" stop="37942"/>
              <exon start="38292" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTA : ATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG : GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAG : GTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAG : GTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAG : ATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAG : GCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAG : GAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT : GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG : ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAGGTTTATTCATAT</gDNA_template>
            <first_frame> K  S  N  T  *  I  T  P  H  F  T  L  L  S  L  S  L  L  L  K  F  K  S  V  N  C  I  F  H  N  P  R  I  S  S  *  M  N  S  T  D  S  I  K  T  L  L  A  T  T  G  G  D  T  V  K  L  F  D  L  T  L  E  P  R  D  P  C  I  L  S  Y  T  P  S  P  G  F  Q  V  N  S  V  K  W  N  H  T   : N  L  V  V  A  S  A  G  D  D  K  K  I  S  L  W  R  K  N  G  Q  S  L  G  T  V  P  L  A  G  T  D  S  A  D  N  I  E  :  E  S  I  S  T  V  N  F  S  S  K  A  S  R  Y  I  C  S  G  G  S  G  Q  V  I  R  I  W  D  L  Q  R  K  R  C  I  K  W  L  K  G  H  T  N  T  I  S  G  A  M  Y  N  C  K  D  E  H  L  A  S  I  S  L  N  G  N  L  I  L  H  N  L  A  S  G  A  K  A  A  E  L  K  D  P  N  A  Q  :  V  L  R  V  L  D  Y  S  K  I  S  R  H  L  L  V  T  A  G  D  D  G  S  I  H  L  W  D  T  T  G  R  S  P  K  :  V  S  W  L  K  Q  H  S  A  P  T  S  G  I  S  F  S  P  T  N  D  K  :  I  V  A  S  V  G  M  D  K  K  L  Y  T  F  D  S  G  S  R  R  P  T  F  C  I  P  Y  E  A  P  F  S  S  L  A  F  T  D  D  G  F  T  L  A  A  G  T  S  S  G  R  V  V  F  Y  D  V  R  G  K  P  Q  P  L  T  V  L  R  A  Y  G  N  S  E  :  A  V  T  S  L  C  W  Q  R  A  K  P  V  I  V  N  E  N  N  C  T  T  E  M  A  L  L  G  S  A  V  E  D  S  I  L  M  P  D  P  L  P  A  M  M  S  S  S  L  A  T  S  M  T  T  S  G  S  R  T  T  V  R  S  G  S  V  D  S  F  S  F  P  A  G  I  T  G  S  T  S  G  T  T  G  L  S  P  S  E  E  T  P  I  R  S  S  L  W  K  G  G  S  L  A  R  L  H  A  P  R  N  F  K  D  D  M  E  V  F  S  P  L  V  E  V  Q  P  I  T  P  S  L  D  K  L  W  D  D  Q  E  G  F  K  K  D  F  D  K  K  S  S  L  L  F  P  S  S  L  R  F  P  L  P  V  E  G  G  N  E  N  R  P  I  F  D  W  K  S  S  S  L  P  K  Q  :  E  D  A  S  F  A  Q  L  S  S  T  P  T  S  S  R  G  D  D  S  S  S  I  T  P  P  E  A  W  G  G  E  R  L  S  D  R  L  S  H  L  R  Q  S  G  N  M  P  S  R  F  A  I  S  T  S  G  P  L  A  P  G  S  M  L  S  G  L  Q  D  N  F  P  A  T  Q  S  I  G  S  L  T  S  S  T  L  S  L  A  N  L  R  I  K  E  N  P  N  E  E  T  I  L  G  S  S  E  H  A  S  S  T  S  F  S  V  G  T  K  G  I  T  G  Q  G  T  L  D  T  L  G  S  T  V  S  L  P  R  R  F  S  S  Y  A  E  R  I  S  T  T  P  S  F  S  D  G  T  L  S  V  G  S  P  K  T  K  K  T  G  A  E  T  R  E  E  L  L  N  S  L  L  S  R  S  D  T  S  S  A  T  A  A  G  A  F  Q  A  I  N  :  G  E  I  K  Q  S  Q  K  S  T  L  P  E  L  Q  Q  G  S  S  F  T  L  Q  L  F  Q  R  T  Q  E  E  T  L  S  S  L  Q  K  S  I  H  E  D  M  R  N  L  H  L  D  I  L  R  Q  F  H  M  Q  E  :  M  E  T  S  S  A  M  K  L  I  L  E  N  Q  A  E  L  M  K  E  V  Q  L  L  R  R  E  T  Q  Q  L  R  Q  L  L  *  P  D  *  L  K  V  L  S  L  R  I  L  L  V  L  A  M  Y  A  M  L  F  *  E  I  C  T  D  S  C  V  V  S  S  E  C  G  S  V  I  V  C  L  S  N  C  G  R  I  W  G  F  I  L  P  *  Y  S  K  G  V  C  D  G  *  S  I  T  V  K  S  A  V  M  V  V  Y  R  K  L  A  R  P  I  S  E  I  *  C  T  E  L  Q  I  I  *  F  T  L  I  *  K  T  S  F  Q  V  G  G  G  L  F  I  </first_frame>
            <second_frame>  N  Q  T  P  K  L  H  P  T  S  L  F  S  L  F  P  F  F  *  N  S  N  L  *  T  V  Y  F  T  I  Q  E  S  L  H  R  *  I  L  Q  I  R  L  R  P  F  W  L  L  L  A  V  T  L  L  S  F  L  T  S  L  W  N  P  V  I  P  A  F  L  A  I  L  L  P  L  D  S  K  S  I  P  S  S  G  I  T  L  :  I  W  W  W  Q  A  L  E  M  T  R  R  Y  L  C  G  G  K  M  D  R  V  W  G  L  Y  H  W  P  A  L  I  V  L  T  I  S  R :   S  L  F  Q  Q  L  T  L  A  A  K  H  P  D  T  Y  V  L  E  V  V  A  K  L  Y  E  Y  G  I  C  S  G  S  V  A  S  N  G  *  K  V  I  P  I  L  L  V  V  Q  C  T  I  V  K  M  S  T  *  L  L  S  V  L  M  G  I  L  Y  F  T  T  L  L  L  V  Q  R  L  L  N  S  R  I  Q  M  R  R :   F  *  E  C  L  I  I  L  R  L  A  G  I  Y  W  *  Q  L  V  M  M  D  L  S  T  C  G  I  Q  L  V  A  A  P  R :   F  L  G  *  S  S  I  L  H  Q  L  L  A  L  V  S  H  Q  Q  T  T  R :   L  L  L  V  L  V  W  I  R  S  C  T  L  L  T  Q  G  Q  E  G  R  H  F  A  F  L  T  R  H  L  F  L  H  W  H  L  L  M  T  D  S  L  W  Q  L  E  Q  V  V  A  G  *  Y  S  M  T  F  V  E  N  H  N  P  *  L  F  Y  V  L  M  E  I  L  R :   L  *  Q  V  Y  A  G  K  E  Q  N  L  *  L  S  M  K  T  I  A  L  Q  K  W  L  S  W  A  V  L  W  R  I  Q  F  *  C  L  T  H  F  L  L  *  C  H  Q  A  *  Q  L  L  *  Q  H  Q  V  R  E  P  L  F  V  Q  V  L  W  T  H  F  L  F  Q  Q  A  L  Q  D  L  H  L  G  Q  Q  V  Y  L  H  P  R  K  H  P  Y  E  V  V  Y  G  K  V  D  L  W  Q  D  Y  M  L  L  V  T  S  R  M  I  W  K  F  F  L  L  L  L  K  F  S  Q  L  H  L  H  L  I  S  C  G  M  I  R  K  V  S  K  R  I  L  I  R  S  H  L  C  Y  F  L  L  L  *  G  F  P  F  Q  L  R  V  A  M  R  I  A  P  Y  L  I  G  N  Q  V  P  Y  P  N  R :   R  M  L  L  L  H  S  C  L  P  L  Q  H  L  L  V  V  M  I  L  P  P  *  L  L  Q  K  L  G  V  V  R  D  Y  R  I  D  Y  L  I  F  G  S  Q  E  I  C  L  P  V  L  Q  S  R  H  L  V  L  L  H  Q  D  L  C  Y  L  D  Y  R  I  I  F  L  Q  L  R  V  S  A  L  *  L  V  L  L  *  V  W  L  I  C  A  *  K  K  I  Q  M  K  K  L  F  *  D  L  Q  N  M  R  V  P  H  P  F  Q  L  E  Q  K  A  L  L  G  R  V  L  L  I  L  L  V  Q  L  Y  P  S  H  E  D  F  P  V  M  L  R  E  *  A  L  H  H  P  S  V  M  E  P  F  L  L  V  L  Q  K  L  R  K  L  E  L  K  Q  G  K  S  F  *  I  A  C  Y  L  G  R  T  R  R  L  L  Q  Q  L  V  L  S  K  Q  *  M :   V  K  L  S  N  L  K  S  P  H  C  L  N  C  S  R  E  V  P  L  H  S  S  C  S  N  V  H  K  K  K  L  F  L  P  F  K  N  P  F  T  R  I  *  G  I  F  T  *  I  S  *  D  N  F  I  C  K  R :   W  K  L  L  V  L  *  N  *  Y  W  K  T  K  Q  S  *  *  K  R  F  N  Y  F  E  G  K  H  S  S  F  D  S  Y  Y  D  Q  T  S  *  K  S  C  H  Y  V  F  F  *  F  *  P  C  T  Q  C  C  F  R  R  F  V  L  T  V  V  *  *  V  A  S  A  E  V  L  L  C  V  Y  L  I  V  G  E  F  G  G  L  F  Y  P  N  I  V  K  E  C  V  M  A  D  Q  *  Q  L  R  V  L  L  W  L  C  T  E  S  W  L  G  Q  F  Q  K  F  N  V  Q  N  Y  R  S  S  N  S  L  *  F  K  K  H  P  S  K  L  E  E  V  Y  S  Y </second_frame>
            <third_frame>   I  K  H  L  N  Y  T  P  L  H  S  S  L  S  F  P  S  S  E  I  Q  I  C  K  L  Y  I  S  Q  S  K  N  L  F  I  D  E  F  Y  R  F  D  *  D  P  F  G  Y  Y  W  R  *  H  C  *  A  F  *  P  H  F  G  T  P  *  S  L  H  S  *  L  Y  S  F  P  W  I  P  S  Q  F  R  Q  V  E  S  H  * :   F  G  G  G  K  R  W  R  *  Q  E  D  I  F  V  E  E  K  W  T  E  F  G  D  C  T  T  G  R  H  *  *  C  *  Q  Y  R   : G  V  Y  F  N  S  *  L  *  Q  Q  S  I  P  I  H  M  F  W  R  *  W  P  S  Y  T  N  M  G  F  A  A  E  A  L  H  Q  M  V  E  R  S  Y  Q  Y  Y  *  W  C  N  V  Q  L  *  R  *  A  L  S  F  Y  Q  S  *  W  E  S  Y  T  S  Q  P  C  F  W  C  K  G  C  *  T  Q  G  S  K  C  A   : G  F  E  S  A  *  L  F  *  D  *  Q  A  F  I  G  D  S  W  *  *  W  I  Y  P  P  V  G  Y  N  W  S  Q  P  Q   : G  F  L  A  K  A  A  F  C  T  N  F  W  H  *  F  L  T  N  K  R  Q   : D  C  C  *  C  W  Y  G  *  E  V  V  H  F  *  L  R  V  K  K  A  D  I  L  H  S  L  R  G  T  F  F  F  T  G  I  Y  *  *  R  I  H  S  G  S  W  N  K  *  W  P  G  S  I  L  *  R  S  W  K  T  T  T  L  D  C  F  T  C  L  W  K  F  *   : G  C  D  K  S  M  L  A  K  S  K  T  C  N  C  Q  *  K  Q  L  H  Y  R  N  G  S  P  G  Q  C  C  G  G  F  N  F  D  A  *  P  T  S  C  Y  D  V  I  K  P  S  N  F  Y  D  N  I  R  F  E  N  H  C  S  F  R  F  C  G  L  I  F  F  S  S  R  H  Y  R  I  Y  I  W  D  N  R  F  I  S  I  R  G  N  T  H  T  K  *  F  M  E  R  W  I  F  G  K  I  T  C  S  S  *  L  Q  G  *  Y  G  S  F  F  S  S  C  *  S  S  A  N  Y  T  F  T  *  *  V  V  G  *  S  G  R  F  Q  K  G  F  *  *  E  V  I  F  A  I  S  F  F  S  K  V  S  P  S  S  *  G  W  Q  *  E  S  P  H  I  *  L  E  I  K  F  L  T  Q  T   : G  G  C  F  F  C  T  V  V  F  H  S  N  I  F  S  W  *  *  F  F  L  H  N  S  S  R  S  L  G  W  *  E  I  I  G  *  I  I  S  S  S  A  V  R  K  Y  A  F  P  F  C  N  L  D  I  W  S  S  C  T  R  I  Y  V  I  W  I  T  G  *  F  S  C  N  S  E  Y  R  L  F  D  *  F  Y  S  K  F  G  *  F  A  H  K  R  K  S  K  *  R  N  Y  S  R  I  F  R  T  C  E  F  H  I  L  F  S  W  N  K  R  H  Y  W  A  G  Y  S  *  Y  S  W  F  N  C  I  P  P  T  K  I  F  Q  L  C  *  E  N  K  H  Y  T  I  L  Q  *  W  N  P  F  C  W  F  S  K  N  *  E  N  W  S  *  N  K  G  R  A  S  E  *  L  V  I  *  V  G  H  V  V  C  Y  S  S  W  C  F  P  S  N  K   : W  *  N  *  A  I  S  K  V  H  T  A  *  I  A  A  G  K  F  L  Y  T  P  A  V  P  T  Y  T  R  R  N  S  F  F  P  S  K  I  H  S  R  G  Y  E  E  S  S  L  R  Y  L  K  T  I  S  Y  A  R   : D  G  N  F  *  C  Y  E  I  D  T  G  K  P  S  R  A  D  E  R  G  S  I  T  S  K  G  N  T  A  A  S  T  V  I  M  T  R  L  A  K  S  L  V  I  T  Y  S  F  S  F  S  H  V  R  N  A  V  L  G  D  L  Y  *  Q  L  C  S  E  *  R  V  R  K  C  Y  C  V  F  I  *  L  W  A  N  L  G  V  Y  F  T  L  I  *  *  R  S  V  *  W  L  I  N  N  S  *  E  C  C  Y  G  C  V  Q  K  V  G  *  A  N  F  R  N  L  M  Y  R  T  T  D  H  L  I  H  F  D  L  K  N  I  L  P  S  W  R  R  F  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32472" stop="32628"/>
                    <exon start="32698" stop="32810"/>
                    <exon start="34659" stop="34919"/>
                    <exon start="35047" stop="35151"/>
                    <exon start="36011" stop="36076"/>
                    <exon start="36204" stop="36425"/>
                    <exon start="37388" stop="37942"/>
                    <exon start="38292" stop="38888"/>
                    <exon start="39092" stop="39268"/>
                    <exon start="39344" stop="39451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2358</number_coding_nucleotides>
                  <number_encoded_amino_acids>786</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNSTDSIKTLLATTGGDTVKLFDLTLEPRDPCILSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWRKNGQSLGTVPLAGTDSADNIEESISTVNFSSKASRYICSGGSGQVIRIWDLQRKRCIKWLKGHTNTISGAMYNCKDEHLASISLNGNLILHNLASGAKAAELKDPNAQVLRVLDYSKISRHLLVTAGDDGSIHLWDTTGRSPKVSWLKQHSAPTSGISFSPTNDKIVASVGMDKKLYTFDSGSRRPTFCIPYEAPFSSLAFTDDGFTLAAGTSSGRVVFYDVRGKPQPLTVLRAYGNSEAVTSLCWQRAKPVIVNENNCTTEMALLGSAVEDSILMPDPLPAMMSSSLATSMTTSGSRTTVRSGSVDSFSFPAGITGSTSGTTGLSPSEETPIRSSLWKGGSLARLHAPRNFKDDMEVFSPLVEVQPITPSLDKLWDDQEGFKKDFDKKSSLLFPSSLRFPLPVEGGNENRPIFDWKSSSLPKQEDASFAQLSSTPTSSRGDDSSSITPPEAWGGERLSDRLSHLRQSGNMPSRFAISTSGPLAPGSMLSGLQDNFPATQSIGSLTSSTLSLANLRIKENPNEETILGSSEHASSTSFSVGTKGITGQGTLDTLGSTVSLPRRFSSYAERISTTPSFSDGTLSVGSPKTKKTGAETREELLNSLLSRSDTSSATAAGAFQAINGEIKQSQKSTLPELQQGSSFTLQLFQRTQEETLSSLQKSIHEDMRNLHLDILRQFHMQEMETSSAMKLILENQAELMKEVQLLRRETQQLRQLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32411" e_stop="32810"/>
            <exon e_start="34659" e_stop="34913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="0.998"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="32411" e_stop="32810" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="34659" e_stop="34913" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32411" stop="32810"/>
              <exon start="34659" stop="34913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG : GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAAT</gDNA_template>
            <first_frame> P  S  S  E  I  Q  I  C  K  L  Y  I  S  Q  S  K  N  L  F  I  D  E  F  Y  R  F  D  *  D  P  F  G  Y  Y  W  R  *  H  C  *  A  F  *  P  H  F  G  T  P  *  S  L  H  S  *  L  Y  S  F  P  W  I  P  S  Q  F  R  Q  V  E  S  H  *  L  V  S  P  F  Y  H  E  F  T  F  F  L  Q  I  R  F  N  F  G  C  C  R  F  G  G  G  K  R  W  R  *  Q  E  D  I  F  V  E  E  K  W  T  E  F  G  D  C  T  T  G  R  H  *  *  C  *  Q  Y  R   : G  V  Y  F  N  S  *  L  *  Q  Q  S  I  P  I  H  M  F  W  R  *  W  P  S  Y  T  N  M  G  F  A  A  E  A  L  H  Q  M  V  E  R  S  Y  Q  Y  Y  *  W  C  N  V  Q  L  *  R  *  A  L  S  F  Y  Q  S  *  W  E  S  Y  T  S  Q  P  C  F  W  C  K  G  C  *  T  Q  G  S  K  </first_frame>
            <second_frame>  L  L  L  K  F  K  S  V  N  C  I  F  H  N  P  R  I  S  S  *  M  N  S  T  D  S  I  K  T  L  L  A  T  T  G  G  D  T  V  K  L  F  D  L  T  L  E  P  R  D  P  C  I  L  S  Y  T  P  S  P  G  F  Q  V  N  S  V  K  W  N  H  T  S  *  F  P  L  S  I  M  N  L  H  S  F  C  K  F  D  L  T  L  G  V  A  D  L  V  V  A  S  A  G  D  D  K  K  I  S  L  W  R  K  N  G  Q  S  L  G  T  V  P  L  A  G  T  D  S  A  D  N  I  E  :  E  S  I  S  T  V  N  F  S  S  K  A  S  R  Y  I  C  S  G  G  S  G  Q  V  I  R  I  W  D  L  Q  R  K  R  C  I  K  W  L  K  G  H  T  N  T  I  S  G  A  M  Y  N  C  K  D  E  H  L  A  S  I  S  L  N  G  N  L  I  L  H  N  L  A  S  G  A  K  A  A  E  L  K  D  P  N </second_frame>
            <third_frame>   F  F  *  N  S  N  L  *  T  V  Y  F  T  I  Q  E  S  L  H  R  *  I  L  Q  I  R  L  R  P  F  W  L  L  L  A  V  T  L  L  S  F  L  T  S  L  W  N  P  V  I  P  A  F  L  A  I  L  L  P  L  D  S  K  S  I  P  S  S  G  I  T  L  V  S  F  P  F  L  S  *  I  Y  I  L  F  A  N  S  I  *  L  W  V  L  Q  I  W  W  W  Q  A  L  E  M  T  R  R  Y  L  C  G  G  K  M  D  R  V  W  G  L  Y  H  W  P  A  L  I  V  L  T  I  S  R :   S  L  F  Q  Q  L  T  L  A  A  K  H  P  D  T  Y  V  L  E  V  V  A  K  L  Y  E  Y  G  I  C  S  G  S  V  A  S  N  G  *  K  V  I  P  I  L  L  V  V  Q  C  T  I  V  K  M  S  T  *  L  L  S  V  L  M  G  I  L  Y  F  T  T  L  L  L  V  Q  R  L  L  N  S  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32634" stop="32810"/>
                    <exon start="34659" stop="34913"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPLSIMNLHSFCKFDLTLGVADLVVASAGDDKKISLWRKNGQSLGTVPLAGTDSADNIEESISTVNFSSKASRYICSGGSGQVIRIWDLQRKRCIKWLKGHTNTISGAMYNCKDEHLASISLNGNLILHNLASGAKAAELKDPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="41820" PGL_stop="40251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41759" e_stop="40533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="41759" e_stop="40533" e_length="1227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41759" stop="40952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41185" stop="40533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTT</gDNA_template>
            <first_frame> V  N  P  K  P  K  P  P  L  L  L  K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R  G  L  I  F  P  N  S  L  F  H  V  A  D  E  F  *  Y  Y  *  L  K  S  P  N  Y  G  F  Y  H  *  F  V  S  V  F  R  W  I  L  W  K  I  H  A  V  F  S  F  N  Q  K  N  I  Y  V  T  G  L  A  D  F  V  L  F  F  H  C  D  C  R  L  R  R  L  L  R  V  S  P  S  R  L  K  I  I  L  D  N  K  L  L  H  *  Q  E  N  I  K  V  N  L  *  M  W  K  F  T  C  L  T  L  L  P  V  M  K  M  R  M  T  T  V  V  R  M  M  T  K  G  P  I  S  P  I  F  L  *  L  L  G  C  L  R  E  M  D  L  L  W  S  L  V  S  Q  L  L  L  M  R  L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S  R  E  S  *  C  L  I  *  Q  I  S  Y  L  F  F  I  N  Y  *  Y  R  I  Y  I  *  S  S  G  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F </first_frame>
            <second_frame>  *  T  L  N  P  S  L  L  F  S  L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  V  *  F  S  P  I  L  F  F  M  S  Q  M  N  F  N  T  I  N  *  N  R  L  I  M  D  S  T  T  D  L  F  L  F  L  G  G  F  Y  G  K  F  M  L  F  L  V  L  I  K  K  I  Y  M  L  L  D  *  Q  I  L  Y  C  F  F  I  V  I  A  G  *  G  G  S  *  G  F  P  L  Q  D  *  R  S  S  W  T  T  N  Y  Y  I  D  K  R  I  S  R  *  I  Y  K  C  G  S  S  H  A  *  P  C  Y  R  *  *  R  *  E  *  Q  R  W  *  G  *  *  R  R  V  Q  S  V  Q  Y  S  S  S  C  *  G  V  *  E  K  W  T  C  F  G  V  W  Y  H  S  F  C  *  *  D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  V  S  L  D  V  *  F  N  K  F  L  I  C  F  S  L  I  T  N  I  E  Y  I  Y  N  H  Q  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y   </second_frame>
            <third_frame>   K  P  *  T  Q  A  S  S  S  P  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R  F  D  F  P  Q  F  S  F  S  C  R  R  *  I  L  I  L  L  I  K  I  A  *  L  W  I  L  P  L  I  C  F  C  F  *  V  D  F  M  E  N  S  C  C  F  *  F  *  S  K  K  Y  I  C  Y  W  I  S  R  F  C  T  V  F  S  L  *  L  Q  V  E  E  A  P  E  G  F  P  F  K  I  E  D  H  P  G  Q  Q  T  I  T  L  T  R  E  Y  Q  G  E  S  I  N  V  E  V  H  M  P  D  L  V  T  G  D  E  D  E  N  D  N  G  G  E  D  D  D  E  G  S  N  Q  S  N  I  P  L  V  V  R  V  S  K  R  N  G  P  A  L  E  F  G  I  T  A  F  A  D  E  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T  *  V  L  M  F  N  L  T  N  F  L  S  V  F  H  *  L  L  I  *  N  I  Y  I  I  I  R  D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41223" stop="40870"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITAFADEIAIDTLSIKDPNVAEDQIAYEGPDFT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41755" stop="41420"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLNPSLLFSLNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41728" e_stop="41426"/>
            <exon e_start="41217" e_stop="41185"/>
            <exon e_start="40950" e_stop="40874"/>
            <exon e_start="40792" e_stop="40251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.987"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="41728" e_stop="41426" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41217" e_stop="41185" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41184" i_stop="40951" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="40950" e_stop="40874" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="40792" e_stop="40251" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41426"/>
              <exon start="41217" stop="41185"/>
              <exon start="40950" stop="40874"/>
              <exon start="40792" stop="40251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573384" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG : GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAG : ATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC : GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTCTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAACAATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCTAAGTGGATCCTCGATTGTGGTGTATTACTCTTCTTGTGCTATG</gDNA_template>
            <first_frame> L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  :  V  E  E  A  P  E  G  F  P  F  K  :  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T :   D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  F  A  I  D  V  P  W  P  L  K  I  E  C  W  *  I  L  F  I  H  K  S  *  P  S  L  L  S  A  S  S  V  C  T  C  S  S  R  L  L  L  V  D  E  I  A  F  P  L  L  L  S  S  Q  I  T  L  R  M  I  L  L  S  L  N  N  D  F  S  N  M  Y  W  L  A  Y  S  F  V  S  K  W  I  L  D  C  G  V  L  L  F  L  C  Y  </first_frame>
            <second_frame>  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R :   L  R  R  L  L  R  V  S  P  S  R :   L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S   : R  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F  L  L  *  M  Y  H  G  H  L  K  *  N  V  G  E  F  Y  L  Y  I  R  V  S  P  R  F  Y  Q  L  V  L  F  A  L  A  A  A  G  C  C  L  L  M  R  L  H  F  H  C  Y  C  Q  V  K  S  L  C  A  *  Y  C  F  R  L  T  M  I  S  Q  T  C  I  G  L  H  I  H  L  C  L  S  G  S  S  I  V  V  Y  Y  S  S  C  A  M </second_frame>
            <third_frame>   K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R   : G  *  G  G  S  *  G  F  P  L  Q   : D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  :  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y  F  C  Y  R  C  T  M  A  T  *  N  R  M  L  V  N  F  I  Y  T  *  E  L  A  L  A  F  I  S  *  F  C  L  H  L  Q  Q  Q  V  V  A  C  *  *  D  C  I  S  I  V  I  V  K  S  N  H  F  A  H  D  I  A  F  A  *  Q  *  F  L  K  H  V  L  A  C  I  F  I  C  V  *  V  D  P  R  L  W  C  I  T  L  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41728" stop="41426"/>
                    <exon start="41217" stop="41185"/>
                    <exon start="40950" stop="40874"/>
                    <exon start="40792" stop="40633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEVEEAPEGFPFKIAIDTLSIKDPNVAEDQIAYEGPDFTDLDENLQKAFHKYLEIRGIKPSTTNFLHEYMVNKDSREYKMWLKNLKKFIEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40464" stop="40252"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSLLSASSVCTCSSRLLLVDEIAFPLLLSSQITLRMILLSLNNDFSNMYWLAYSFVSKWILDCGVLLFLCY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41820" e_stop="41426"/>
            <exon e_start="41217" e_stop="40874"/>
            <exon e_start="40792" e_stop="40493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41820" e_stop="41426" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41217" e_stop="40874" e_length="344"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="40792" e_stop="40493" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41820" stop="41426"/>
              <exon start="41217" stop="40874"/>
              <exon start="40792" stop="40493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG : GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC : GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTG</gDNA_template>
            <first_frame> P  K  L  K  L  K  F  R  K  K  S  E  V  S  Y  *  *  N  M  *  R  K  P  *  T  Q  A  S  S  S  P  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R :   L  R  R  L  L  R  V  S  P  S  R  L  K  I  I  L  D  N  K  L  L  H  *  Q  E  N  I  K  V  N  L  *  M  W  K  F  T  C  L  T  L  L  P  V  M  K  M  R  M  T  T  V  V  R  M  M  T  K  G  P  I  S  P  I  F  L  *  L  L  G  C  L  R  E  M  D  L  L  W  S  L  V  S  Q  L  L  L  M  R  L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S   : R  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F  L  L  *  M  Y  H  G  H  L  K  *  N  V  </first_frame>
            <second_frame>  P  S  *  S  *  N  S  E  K  K  V  K  S  P  I  N  R  T  C  S  V  N  P  K  P  K  P  P  L  L  L  K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R   : G  *  G  G  S  *  G  F  P  L  Q  D  *  R  S  S  W  T  T  N  Y  Y  I  D  K  R  I  S  R  *  I  Y  K  C  G  S  S  H  A  *  P  C  Y  R  *  *  R  *  E  *  Q  R  W  *  G  *  *  R  R  V  Q  S  V  Q  Y  S  S  S  C  *  G  V  *  E  K  W  T  C  F  G  V  W  Y  H  S  F  C  *  *  D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  :  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y  F  C  Y  R  C  T  M  A  T  *  N  R  M  L </second_frame>
            <third_frame>   Q  V  E  V  E  I  P  K  K  K  *  S  L  L  L  I  E  H  V  A  *  T  L  N  P  S  L  L  F  S  L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  :  V  E  E  A  P  E  G  F  P  F  K  I  E  D  H  P  G  Q  Q  T  I  T  L  T  R  E  Y  Q  G  E  S  I  N  V  E  V  H  M  P  D  L  V  T  G  D  E  D  E  N  D  N  G  G  E  D  D  D  E  G  S  N  Q  S  N  I  P  L  V  V  R  V  S  K  R  N  G  P  A  L  E  F  G  I  T  A  F  A  D  E  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T :   D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  F  A  I  D  V  P  W  P  L  K  I  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41755" stop="41426"/>
                    <exon start="41217" stop="40874"/>
                    <exon start="40792" stop="40633"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLNPSLLFSLNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITAFADEIAIDTLSIKDPNVAEDQIAYEGPDFTDLDENLQKAFHKYLEIRGIKPSTTNFLHEYMVNKDSREYKMWLKNLKKFIEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="50502" PGL_stop="54714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50502" e_stop="51025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="50502" e_stop="51025" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50502" stop="51025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTA</gDNA_template>
            <first_frame> T  P  L  L  T  S  L  F  P  C  *  N  L  K  S  N  G  G  K  I  I  S  S  I  W  P  L  T  I  Y  I  Y  Y  I  I  F  S  L  *  L  L  T  L  F  F  S  L  S  Q  A  R  V  L  V  S  T  E  I  I  L  S  K  L  R  K  W  L  I  L  E  K  N  L  Q  I  G  S  A  V  F  R  Y  N  C  F  D  F  I  G  I  F  I  N  L  L  A  M  H  F  S  K  S  I  L  C  T  E  S  M  F  N  *  L  S  N  H  L  I  E  F  *  P  I  L  N  I  S  L  I  G  L  S  A  A  R  F  K  L  *  S  I  Q  F  F  V  H  S  A  S  W  R  R  *  I  Q  V  H  V  Y  S  F  R  A  H  L  G  *  G  M  L  I  W  G  N   </first_frame>
            <second_frame>  H  P  C  S  Q  A  F  S  H  V  K  I  *  N  Q  M  E  G  K  *  F  P  V  S  G  L  *  R  Y  T  Y  I  T  S  Y  F  H  F  N  Y  S  H  F  F  F  L  S  H  R  Q  G  F  *  Y  P  L  K  L  F  S  Q  N  L  E  N  G  *  F  *  R  R  I  S  R  L  A  P  Q  F  S  G  I  T  V  L  I  S  S  E  F  S  *  I  C  S  L  C  T  F  Q  S  R  F  Y  A  L  N  L  C  L  I  S  *  A  I  I  *  L  S  F  N  R  F  *  T  S  V  *  L  V  F  Q  L  R  D  S  N  F  D  Q  F  N  F  L  F  T  V  L  R  G  G  G  R  F  K  Y  M  Y  I  V  L  E  H  I  W  V  R  V  C  *  F  G  A  I  </second_frame>
            <third_frame>   T  P  A  H  K  P  F  P  M  L  K  S  E  I  K  W  R  E  N  N  F  Q  Y  L  A  F  N  D  I  H  I  L  H  H  I  F  T  L  T  T  H  T  F  F  F  S  L  T  G  K  G  F  S  I  H  *  N  Y  S  L  K  T  *  K  M  A  D  S  R  E  E  S  P  D  W  L  R  S  F  Q  V  *  L  F  *  F  H  R  N  F  H  K  F  A  R  Y  A  L  F  K  V  D  F  M  H  *  I  Y  V  *  L  V  E  Q  S  F  D  *  V  L  T  D  F  E  H  Q  F  D  W  S  F  S  C  E  I  Q  T  L  I  N  S  I  F  C  S  Q  C  F  V  A  E  V  D  S  S  T  C  I  *  F  *  S  T  F  G  L  G  Y  A  N  L  G  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50619" stop="50837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTLFFSLSQARVLVSTEIILSKLRKWLILEKNLQIGSAVFRYNCFDFIGIFINLLAMHFSKSILCTESMFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50532" e_stop="50743"/>
            <exon e_start="51775" e_stop="52033"/>
            <exon e_start="52135" e_stop="52196"/>
            <exon e_start="54628" e_stop="54714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50532" e_stop="50743" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.884">
            <gDNA_intron_boundary i_start="50744" i_stop="51774" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51775" e_stop="52033" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.736">
            <gDNA_intron_boundary i_start="52034" i_stop="52134" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52135" e_stop="52196" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52197" i_stop="54627" i_length="2431"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54628" e_stop="54714" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50532" stop="50743"/>
              <exon start="51775" stop="52033"/>
              <exon start="52135" stop="52196"/>
              <exon start="54628" stop="54714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAG : GCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAG : GAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAA : GAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGTGGAGGAAGTCCTTGAC</gDNA_template>
            <first_frame> *  N  L  K  S  N  G  G  K  I  I  S  S  I  W  P  L  T  I  Y  I  Y  Y  I  I  F  S  L  *  L  L  T  L  F  F  S  L  S  Q  A  R  V  L  V  S  T  E  I  I  L  S  K  L  R  K  W  L  I  L  E  K  N  L  Q  I  G  S  A  V  F  R :   H  L  L  R  *  S  C  H  P  D  L  N  L  L  *  I  T  T  T  *  V  M  M  R  I  A  S  I  *  V  S  C  F  R  R  I  K  H  H  F  Q  R  K  N  V  V  R  M  D  M  D  L  N  S  R  R  R  P  K  *  I  L  R  L  K  M  K  K  *  I  A  H  L  L  G  R  E  R  M  K  T  R  V  K  K  K  :  E  K  A  L  T  R  L  *  R  R  E  E  H  W  R  S  L  L  Q  I  K :   N  P  V  I  Q  S  V  R  C  H  R  I  L  S  L  L  M  M  A  V  P  *  K  W  R  K  S  L   </first_frame>
            <second_frame>  K  I  *  N  Q  M  E  G  K  *  F  P  V  S  G  L  *  R  Y  T  Y  I  T  S  Y  F  H  F  N  Y  S  H  F  F  F  L  S  H  R  Q  G  F  *  Y  P  L  K  L  F  S  Q  N  L  E  N  G  *  F  *  R  R  I  S  R  L  A  P  Q  F  S   : G  T  C  C  D  N  L  V  I  R  I  *  I  S  C  K  *  Q  P  P  K  *  *  *  G  *  H  Q  S  E  *  A  V  S  E  G  *  N  I  T  F  R  G  K  M  *  S  G  W  T  W  I  S  T  Q  E  D  V  R  S  K  F  S  D  *  K  *  R  S  R  S  H  T  Y  *  E  E  K  E  *  K  P  E  *  K  K  R :   K  R  H  *  Q  G  F  N  E  E  K  S  I  G  E  A  F  Y  R  *   : R  T  Q  S  F  S  L  Y  V  V  I  G  F  *  V  S  S  *  W  Q  F  H  E  S  G  G  S  P  *  </second_frame>
            <third_frame>   K  S  E  I  K  W  R  E  N  N  F  Q  Y  L  A  F  N  D  I  H  I  L  H  H  I  F  T  L  T  T  H  T  F  F  F  S  L  T  G  K  G  F  S  I  H  *  N  Y  S  L  K  T  *  K  M  A  D  S  R  E  E  S  P  D  W  L  R  S  F  Q  :  A  P  A  A  I  I  L  S  S  G  S  E  S  P  V  N  N  N  H  L  S  D  D  E  D  S  I  N  L  S  K  L  F  Q  K  D  K  T  S  L  S  E  E  K  C  S  Q  D  G  H  G  S  Q  L  K  K  T  S  E  V  N  S  P  I  K  N  E  E  V  D  R  T  P  T  R  K  R  K  N  E  N  Q  S  E  K  K   : G  K  G  T  D  K  A  L  T  K  R  R  A  L  E  K  P  F  T  D  K  :  E  P  S  H  S  V  C  T  L  S  S  D  S  E  S  P  H  D  G  S  S  M  K  V  E  E  V  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50693" stop="50743"/>
                    <exon start="51775" stop="52033"/>
                    <exon start="52135" stop="52196"/>
                    <exon start="54628" stop="54714"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADSREESPDWLRSFQAPAAIILSSGSESPVNNNHLSDDEDSINLSKLFQKDKTSLSEEKCSQDGHGSQLKKTSEVNSPIKNEEVDRTPTRKRKNENQSEKKGKGTDKALTKRRALEKPFTDKEPSHSVCTLSSDSESPHDGSSMKVEEVLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="57546" PGL_stop="58014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57546" e_stop="57614"/>
            <exon e_start="57696" e_stop="58014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.790" e_score="0.928"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="57546" e_stop="57614" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.790">
            <gDNA_intron_boundary i_start="57615" i_stop="57695" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57696" e_stop="58014" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57546" stop="57614"/>
              <exon start="57696" stop="58014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGACCAGAATGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCG : GCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCT</gDNA_template>
            <first_frame> G  D  Q  N  E  N  V  D  H  Q  T  N  G  N  V  K  A  K  A  K  K  A  S  :  A  M  E  Q  K  K  G  K  K  G  A  K  I  P  K  K  V  K  K  K  P  Q  V  Q  K  K  S  K  S  K  K  *  D  M  T  L  H  I  S  F  R  L  I  C  I  L  F  I  F  F  S  Y  F  L  S  F  S  S  V  L  C  I  H  I  L  I  I  F  F  K  S  *  *  K  *  S  L  G  S  Y  I  I  G  R  G  H  I  I  C  I  I  C  K  I  F  S  *  L  S  S  I  L  P  *  K  F  </first_frame>
            <second_frame>  V  T  R  M  R  M  L  I  I  R  P  M  G  M  S  K  Q  K  L  R  K  P  R :   L  W  N  K  R  R  A  R  R  E  Q  R  Y  Q  R  K  *  K  R  N  L  K  C  R  R  K  A  R  A  K  N  K  I  *  L  Y  I  F  H  F  V  *  Y  V  F  Y  L  F  S  F  L  I  F  F  L  F  L  L  F  F  V  Y  I  Y  *  S  Y  F  L  K  A  N  E  S  S  L  *  E  A  I  *  L  V  E  A  T  *  Y  V  L  F  A  R  F  S  H  D  Y  P  P  Y  Y  H  K  N  S </second_frame>
            <third_frame>   *  P  E  *  E  C  *  S  S  D  Q  W  E  C  Q  S  K  S  *  E  S  L   : G  Y  G  T  K  E  G  Q  E  G  S  K  D  T  K  E  S  K  K  E  T  S  S  A  E  E  K  Q  E  Q  K  I  R  Y  D  S  T  Y  F  I  S  F  D  M  Y  S  I  Y  F  L  F  L  F  S  F  F  F  F  C  S  L  Y  T  Y  T  D  H  I  F  *  K  L  M  K  V  V  F  R  K  L  Y  N  W  *  R  P  H  N  M  Y  Y  L  Q  D  F  L  M  I  I  L  H  I  T  I  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57605" stop="57614"/>
                    <exon start="57696" stop="57904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESLGYGTKEGQEGSKDTKESKKETSSAEEKQEQKIRYDSTYFISFDMYSIYFLFLFSFFFFCSLYTYTDHIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="65642" PGL_stop="63954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65642" e_stop="65557"/>
            <exon e_start="64423" e_stop="63954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.674" e_score="0.930"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="65642" e_stop="65557" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.674">
            <gDNA_intron_boundary i_start="65556" i_stop="64424" i_length="1133"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="64423" e_stop="63954" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65642" stop="65557"/>
              <exon start="64423" stop="63954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAGTCTTAGAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAAGAAAAAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATC : AGCATCCGGGGCAAGGCGAGTGGGGTGTGGATATCTTCTCAGAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTGGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGTCTAACTGGGCTGACACACATTTGCGACAAAAACTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCGACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAAGGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</gDNA_template>
            <first_frame> E  K  V  L  E  R  E  S  E  *  Q  V  R  E  G  E  E  K  A  C  *  V  F  F  I  S  G  S  S :   A  S  G  A  R  R  V  G  C  G  Y  L  L  R  T  Q  V  F  *  L  T  E  Q  W  R  Y  L  E  N  L  W  *  Q  C  L  Q  M  L  Y  I  C  Q  L  F  W  A  K  M  A  Q  T  L  F  T  S  V  I  G  N  V  K  M  N  M  C  V  G  T  C  S  A  A  V  *  L  G  *  H  T  F  A  T  K  T  V  T  S  E  Y  C  M  I  T  I  T  L  F  A  E  L  A  D  R  F  S  L  *  H  K  L  K  C  R  L  *  K  V  Y  G  G  S  L  M  L  I  V  P  L  L  I  A  A  P  L  S  A  E  G  M  H  I  S  T  H  H  H  L  R  D  L  S  L  L  L  V  P  </first_frame>
            <second_frame>  K  K  S  *  R  E  K  V  S  D  K  *  E  K  E  K  K  K  L  V  R  C  S  S  F  R  V  H   : Q  H  P  G  Q  G  E  W  G  V  D  I  F  S  E  L  K  F  F  D  *  L  N  N  G  G  T  W  K  I  Y  G  S  S  A  Y  K  C  Y  I  S  V  N  Y  S  G  P  R  W  P  K  P  C  S  Q  V  *  L  E  M  *  K  *  T  C  V  W  E  H  V  P  L  P  S  N  W  A  D  T  H  L  R  Q  K  L  *  P  A  N  I  V  *  *  P  *  L  S  L  Q  S  *  P  T  D  F  P  F  N  T  S  *  S  A  G  C  E  R  C  T  E  E  V  *  C  *  *  F  P  F  *  *  L  R  L  *  A  Q  K  G  C  T  F  P  P  I  T  I  *  E  I  F  H  C  C  *  S  H </second_frame>
            <third_frame>   K  S  L  R  E  R  K  *  V  T  S  E  R  R  R  R  K  S  L  L  G  V  L  H  F  G  F  I  :  S  I  R  G  K  A  S  G  V  W  I  S  S  Q  N  S  S  F  L  I  N  *  T  M  E  V  L  G  K  S  M  V  A  V  P  T  N  V  I  Y  L  S  T  I  L  G  Q  D  G  P  N  P  V  H  K  C  D  W  K  C  E  N  E  H  V  C  G  N  M  F  R  C  R  L  T  G  L  T  H  I  C  D  K  N  C  N  Q  R  I  L  Y  D  N  H  N  S  L  C  R  V  S  R  Q  I  F  P  L  T  Q  V  E  V  Q  A  V  K  G  V  R  R  K  F  D  A  D  S  S  P  S  D  S  C  A  F  K  R  R  R  D  A  H  F  H  P  S  P  F  E  R  S  F  T  A  V  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64357" stop="63956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMEVLGKSMVAVPTNVIYLSTILGQDGPNPVHKCDWKCENEHVCGNMFRCRLTGLTHICDKNCNQRILYDNHNSLCRVSRQIFPLTQVEVQAVKGVRRKFDADSSPSDSCAFKRRRDAHFHPSPFERSFTAVSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="68431" PGL_stop="67714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68431" e_stop="67714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="68431" e_stop="67714" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68431" stop="67714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGGGTTATGGGTCTTTTTTCCCTTCCTATATGGATAAATAAAAGCCCAATTTGGACCAACTCATTTTTGTCCATAATCCCATTCTTATAAGGCAAATATAAGCCTATTTTAGGTCTTATTTTCAGATTTTTTAGAGAGAGTTTTTTAGTAGCCAAAAAGAGAGAAAAAGAGCAGATTTTCGCAGTCAAATTTCAGCCATAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTATCCGATTGAGCTGATTTTTGGACAGCATATTATCCTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCATCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTGGTGATTTTGTTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCAAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</gDNA_template>
            <first_frame> C  W  V  M  G  L  F  S  L  P  I  W  I  N  K  S  P  I  W  T  N  S  F  L  S  I  I  P  F  L  *  G  K  Y  K  P  I  L  G  L  I  F  R  F  F  R  E  S  F  L  V  A  K  K  R  E  K  E  Q  I  F  A  V  K  F  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  Y  P  I  E  L  I  F  G  Q  H  I  I  L  I  S  I  F  D  *  E  L  T  E  L  D  L  V  A  C  I  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  V  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  *  H  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  K  G  F  S  T  *  I  L  V  S  C  V  I  G  L  L  L  S  C  Y  I  C  L  V  E  L  L  A  A  L  L  S  Y  C  L  W  L  F  V  F  S  W  F  K  S  K  R  E  S  I  D  L  G  I  L  P  L  L  S  C  Q  A  F  F  </first_frame>
            <second_frame>  V  G  L  W  V  F  F  P  F  L  Y  G  *  I  K  A  Q  F  G  P  T  H  F  C  P  *  S  H  S  Y  K  A  N  I  S  L  F  *  V  L  F  S  D  F  L  E  R  V  F  *  *  P  K  R  E  K  K  S  R  F  S  Q  S  N  F  S  H  N  S  Q  L  Q  I  A  I  P  A  S  F  L  I  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  P  A  S  S  V  L  L  S  *  I  V  A  A  K  L  V  I  L  F  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  D  T  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  W  C  L  V  *  L  V  Y  Y  C  L  V  I  F  V  W  L  N  Y  L  L  P  Y  Y  H  I  A  C  G  C  L  F  S  L  G  S  N  R  K  G  K  V  *  T  W  V  F  F  R  C  Y  P  V  R  H  S  L </second_frame>
            <third_frame>   L  G  Y  G  S  F  F  P  S  Y  M  D  K  *  K  P  N  L  D  Q  L  I  F  V  H  N  P  I  L  I  R  Q  I  *  A  Y  F  R  S  Y  F  Q  I  F  *  R  E  F  F  S  S  Q  K  E  R  K  R  A  D  F  R  S  Q  I  S  A  I  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  P  H  L  N  L  *  L  G  T  D  R  V  G  F  G  G  L  H  L  Q  F  C  C  R  E  *  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  T  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  Q  R  V  F  H  V  N  L  G  V  L  C  D  W  F  I  I  V  L  L  Y  L  F  G  *  I  T  C  C  L  T  I  I  L  L  V  V  V  C  F  L  L  V  Q  I  E  K  G  K  Y  R  L  G  Y  S  S  A  V  I  L  S  G  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68060" stop="67833"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCSFNSLDLVQSYFVVARCLTLVLWPILENNIVTLGDYSGAFGPVVFYSSHQRVFHVNLGVLCDWFIIVLLYLFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="84141" PGL_stop="79205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84141" e_stop="84083"/>
            <exon e_start="83999" e_stop="83917"/>
            <exon e_start="83022" e_stop="82919"/>
            <exon e_start="81360" e_stop="81290"/>
            <exon e_start="80507" e_stop="80209"/>
            <exon e_start="80058" e_stop="79205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.556" acc_prob="0.787" e_score="0.949"/>
          <exon-intron don_prob="0.137" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="84141" e_stop="84083" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.556" acc_prob="0.787">
            <gDNA_intron_boundary i_start="84082" i_stop="84000" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83999" e_stop="83917" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.137" acc_prob="0.754">
            <gDNA_intron_boundary i_start="83916" i_stop="83023" i_length="894"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83022" e_stop="82919" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82918" i_stop="81361" i_length="1558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81360" e_stop="81290" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.656" acc_prob="0.880">
            <gDNA_intron_boundary i_start="81289" i_stop="80508" i_length="782"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80507" e_stop="80209" e_length="299"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="80208" i_stop="80059" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="80058" e_stop="79205" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84141" stop="84083"/>
              <exon start="83999" stop="83917"/>
              <exon start="83022" stop="82919"/>
              <exon start="81360" stop="81290"/>
              <exon start="80507" stop="80209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80240" stop="80209"/>
              <exon start="80058" stop="79205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGACTTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAATACAG : CAATCATGCATTTGAAAATGCATGTATGGAGTTCGATGAAATGAAGTTGAAACCAACTTTTAGGATTCTTTGGGGAATACCAG : GACGGTCTAATGCAATCAATATAGCCGAAAGGCTCGGGATGCCTGATGCCATTGTGCATAAGGCTCGTGAACTTTATGGAGCTGCTAGTGCAGAAATCAATGAG : GTCATACTTGACATGGAGAGATTTAAGCAGAACTATCATGAGCAAGTTCGTGAGTCACAGCGTCTTCTTAA : GCTCACTAAAGGCCTCCATCATAAGTTGCTTATTGCCAGAAAAAATGTGAAAGAACACAGCATTAATCAAAGATTCAGAAAGGAACAGGAAATATTTGAAGCAGCTGCAGTAGCACGATCTTCCATTCAAAGGAGAGCACGACAATATCGTGCAATTTCTAGTCAACCATCCCAGAAAATATTGGGAAGTAATGGACCCACATCAACTATGAAAACTGAAGCTAAAGAGGAAAAAAGTAAAATTTCAGAAGCAACTCCTGCTGTGTACTACTCCAGTACATCCAGGTTGCCTCTTTCAG : CCAAGAGGAGGAAACTTCCCAATGTTGGTGACTCAGTCCACGTTCCTTCGCTTAACAAGCAAGCTTTAGTCCTGAAAGTCGATCCTTCTAGAGAAGAGCTTTTGGTACAAGCTGGTAACATGAAGCTTAAGCTTAAATTAACAGATGTATTGACCTGAAAGGTGCCTGCGCCAGGTAGGTTTTTCATTATCTCCGTCCTGCAGTGAGAAGGTGCCCTTGGGAATCTGGGACGCATTTGAAACCGCCTCTCGCCACCTGCAATTGGTATGACGGGACAGTTAAACTTGCTAAACATGAAGTAAGAATGGTCGTTGGTATATTTCCTTACTATCACGTTTTATAATAAATTAGTGCAATGAGCTCGGGATATATCGTATAGCCTGAGCATATATCCAGTTACCCGGGATGCATCTCATGCTATTTGACTAGGTACTCTCACAACTGACATCTAGCTTGCCCATAAGGAATTGTACTCAGTTTTAAGCTACACCGCTTTCACGATGTTATGGGTTTTTTTAAAAGGATGCCTCGAAGAGAAGGTTCCATCAGAAAATATGCACAATGTTGACCAGCTAGCTATAATTTTCAGTGAAGTGCATGGGGTCATATGCAAGGGAGTGTATCAGTCCAAACATGAGACCTCTTTGTCCTGCGGGCTATACTAAAATTATGGGAAACTTTTGATTGCCCTCGTTCAGGTACACTTGTATTTATTTGAGCTTGCTGGATTTGATTAAAGTCAACTACTAGATTCTGGATGACATCAGTTTATTTGAACTAGGTTGATGCCTTGATTGGAGTGTACTTATTAAATAGCTTCGTTGTGTACAAAAACGTACAGATTTTATACTTCT</gDNA_template>
            <first_frame> G  T  L  L  T  I  A  T  T  H  H  G  E  L  K  T  L  K  Y  S :   N  H  A  F  E  N  A  C  M  E  F  D  E  M  K  L  K  P  T  F  R  I  L  W  G  I  P   : G  R  S  N  A  I  N  I  A  E  R  L  G  M  P  D  A  I  V  H  K  A  R  E  L  Y  G  A  A  S  A  E  I  N  E  :  V  I  L  D  M  E  R  F  K  Q  N  Y  H  E  Q  V  R  E  S  Q  R  L  L  K :   L  T  K  G  L  H  H  K  L  L  I  A  R  K  N  V  K  E  H  S  I  N  Q  R  F  R  K  E  Q  E  I  F  E  A  A  A  V  A  R  S  S  I  Q  R  R  A  R  Q  Y  R  A  I  S  S  Q  P  S  Q  K  I  L  G  S  N  G  P  T  S  T  M  K  T  E  A  K  E  E  K  S  K  I  S  E  A  T  P  A  V  Y  Y  S  S  T  S  R  L  P  L  S   : A  K  R  R  K  L  P  N  V  G  D  S  V  H  V  P  S  L  N  K  Q  A  L  V  L  K  V  D  P  S  R  E  E  L  L  V  Q  A  G  N  M  K  L  K  L  K  L  T  D  V  L  T  *  K  V  P  A  P  G  R  F  F  I  I  S  V  L  Q  *  E  G  A  L  G  N  L  G  R  I  *  N  R  L  S  P  P  A  I  G  M  T  G  Q  L  N  L  L  N  M  K  *  E  W  S  L  V  Y  F  L  T  I  T  F  Y  N  K  L  V  Q  *  A  R  D  I  S  Y  S  L  S  I  Y  P  V  T  R  D  A  S  H  A  I  *  L  G  T  L  T  T  D  I  *  L  A  H  K  E  L  Y  S  V  L  S  Y  T  A  F  T  M  L  W  V  F  L  K  G  C  L  E  E  K  V  P  S  E  N  M  H  N  V  D  Q  L  A  I  I  F  S  E  V  H  G  V  I  C  K  G  V  Y  Q  S  K  H  E  T  S  L  S  C  G  L  Y  *  N  Y  G  K  L  L  I  A  L  V  Q  V  H  L  Y  L  F  E  L  A  G  F  D  *  S  Q  L  L  D  S  G  *  H  Q  F  I  *  T  R  L  M  P  *  L  E  C  T  Y  *  I  A  S  L  C  T  K  T  Y  R  F  Y  T  S </first_frame>
            <second_frame>  G  L  C  *  L  *  L  Q  H  I  M  E  N  L  K  P  L  N  T   : A  I  M  H  L  K  M  H  V  W  S  S  M  K  *  S  *  N  Q  L  L  G  F  F  G  E  Y  Q  :  D  G  L  M  Q  S  I  *  P  K  G  S  G  C  L  M  P  L  C  I  R  L  V  N  F  M  E  L  L  V  Q  K  S  M  R :   S  Y  L  T  W  R  D  L  S  R  T  I  M  S  K  F  V  S  H  S  V  F  L   : S  S  L  K  A  S  I  I  S  C  L  L  P  E  K  M  *  K  N  T  A  L  I  K  D  S  E  R  N  R  K  Y  L  K  Q  L  Q  *  H  D  L  P  F  K  G  E  H  D  N  I  V  Q  F  L  V  N  H  P  R  K  Y  W  E  V  M  D  P  H  Q  L  *  K  L  K  L  K  R  K  K  V  K  F  Q  K  Q  L  L  L  C  T  T  P  V  H  P  G  C  L  F  Q  :  P  R  G  G  N  F  P  M  L  V  T  Q  S  T  F  L  R  L  T  S  K  L  *  S  *  K  S  I  L  L  E  K  S  F  W  Y  K  L  V  T  *  S  L  S  L  N  *  Q  M  Y  *  P  E  R  C  L  R  Q  V  G  F  S  L  S  P  S  C  S  E  K  V  P  L  G  I  W  D  A  F  E  T  A  S  R  H  L  Q  L  V  *  R  D  S  *  T  C  *  T  *  S  K  N  G  R  W  Y  I  S  L  L  S  R  F  I  I  N  *  C  N  E  L  G  I  Y  R  I  A  *  A  Y  I  Q  L  P  G  M  H  L  M  L  F  D  *  V  L  S  Q  L  T  S  S  L  P  I  R  N  C  T  Q  F  *  A  T  P  L  S  R  C  Y  G  F  F  *  K  D  A  S  K  R  R  F  H  Q  K  I  C  T  M  L  T  S  *  L  *  F  S  V  K  C  M  G  S  Y  A  R  E  C  I  S  P  N  M  R  P  L  C  P  A  G  Y  T  K  I  M  G  N  F  *  L  P  S  F  R  Y  T  C  I  Y  L  S  L  L  D  L  I  K  V  N  Y  *  I  L  D  D  I  S  L  F  E  L  G  *  C  L  D  W  S  V  L  I  K  *  L  R  C  V  Q  K  R  T  D  F  I  L   </second_frame>
            <third_frame>   D  F  V  D  Y  S  Y  N  T  S  W  R  T  *  N  P  *  I  Q  :  Q  S  C  I  *  K  C  M  Y  G  V  R  *  N  E  V  E  T  N  F  *  D  S  L  G  N  T  R :   T  V  *  C  N  Q  Y  S  R  K  A  R  D  A  *  C  H  C  A  *  G  S  *  T  L  W  S  C  *  C  R  N  Q  *   : G  H  T  *  H  G  E  I  *  A  E  L  S  *  A  S  S  *  V  T  A  S  S  *  :  A  H  *  R  P  P  S  *  V  A  Y  C  Q  K  K  C  E  R  T  Q  H  *  S  K  I  Q  K  G  T  G  N  I  *  S  S  C  S  S  T  I  F  H  S  K  E  S  T  T  I  S  C  N  F  *  S  T  I  P  E  N  I  G  K  *  W  T  H  I  N  Y  E  N  *  S  *  R  G  K  K  *  N  F  R  S  N  S  C  C  V  L  L  Q  Y  I  Q  V  A  S  F  S :   Q  E  E  E  T  S  Q  C  W  *  L  S  P  R  S  F  A  *  Q  A  S  F  S  P  E  S  R  S  F  *  R  R  A  F  G  T  S  W  *  H  E  A  *  A  *  I  N  R  C  I  D  L  K  G  A  C  A  R  *  V  F  H  Y  L  R  P  A  V  R  R  C  P  W  E  S  G  T  H  L  K  P  P  L  A  T  C  N  W  Y  D  G  T  V  K  L  A  K  H  E  V  R  M  V  V  G  I  F  P  Y  Y  H  V  L  *  *  I  S  A  M  S  S  G  Y  I  V  *  P  E  H  I  S  S  Y  P  G  C  I  S  C  Y  L  T  R  Y  S  H  N  *  H  L  A  C  P  *  G  I  V  L  S  F  K  L  H  R  F  H  D  V  M  G  F  F  K  R  M  P  R  R  E  G  S  I  R  K  Y  A  Q  C  *  P  A  S  Y  N  F  Q  *  S  A  W  G  H  M  Q  G  S  V  S  V  Q  T  *  D  L  F  V  L  R  A  I  L  K  L  W  E  T  F  D  C  P  R  S  G  T  L  V  F  I  *  A  C  W  I  *  L  K  S  T  T  R  F  W  M  T  S  V  Y  L  N  *  V  D  A  L  I  G  V  Y  L  L  N  S  F  V  V  Y  K  N  V  Q  I  L  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84141" stop="84083"/>
                    <exon start="83999" stop="83917"/>
                    <exon start="83022" stop="82919"/>
                    <exon start="81360" stop="81290"/>
                    <exon start="80507" stop="80209"/>
                    <exon start="80058" stop="79901"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTLLTIATTHHGELKTLKYSNHAFENACMEFDEMKLKPTFRILWGIPGRSNAINIAERLGMPDAIVHKARELYGAASAEINEVILDMERFKQNYHEQVRESQRLLKLTKGLHHKLLIARKNVKEHSINQRFRKEQEIFEAAAVARSSIQRRARQYRAISSQPSQKILGSNGPTSTMKTEAKEEKSKISEATPAVYYSSTSRLPLSAKRRKLPNVGDSVHVPSLNKQALVLKVDPSREELLVQAGNMKLKLKLTDVLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79606" stop="79394"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAHKELYSVLSYTAFTMLWVFLKGCLEEKVPSENMHNVDQLAIIFSEVHGVICKGVYQSKHETSLSCGLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="94186" PGL_stop="86821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94186" e_stop="93812"/>
            <exon e_start="93623" e_stop="93498"/>
            <exon e_start="93330" e_stop="93163"/>
            <exon e_start="93079" e_stop="92996"/>
            <exon e_start="92644" e_stop="92594"/>
            <exon e_start="91320" e_stop="91264"/>
            <exon e_start="91049" e_stop="90990"/>
            <exon e_start="89876" e_stop="89753"/>
            <exon e_start="89673" e_stop="89614"/>
            <exon e_start="88899" e_stop="88657"/>
            <exon e_start="87596" e_stop="87513"/>
            <exon e_start="87421" e_stop="86821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.995"/>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="94186" e_stop="93812" e_length="375"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="93811" i_stop="93624" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93623" e_stop="93498" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="93497" i_stop="93331" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93330" e_stop="93163" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93162" i_stop="93080" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93079" e_stop="92996" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.944">
            <gDNA_intron_boundary i_start="92995" i_stop="92645" i_length="351"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92644" e_stop="92594" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="92593" i_stop="91321" i_length="1273"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91320" e_stop="91264" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91263" i_stop="91050" i_length="214"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91049" e_stop="90990" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90989" i_stop="89877" i_length="1113"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89876" e_stop="89753" e_length="124"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.862">
            <gDNA_intron_boundary i_start="89752" i_stop="89674" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89673" e_stop="89614" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.877" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89613" i_stop="88900" i_length="714"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="88899" e_stop="88657" e_length="243"/>
          </exon>
          <intron i_serial="10" don_prob="0.932" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88656" i_stop="87597" i_length="1060"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="87596" e_stop="87513" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.970" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87512" i_stop="87422" i_length="91"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="87421" e_stop="86821" e_length="601"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94186" stop="93812"/>
              <exon start="93623" stop="93498"/>
              <exon start="93330" stop="93163"/>
              <exon start="93079" stop="92996"/>
              <exon start="92644" stop="92594"/>
              <exon start="91320" stop="91264"/>
              <exon start="91049" stop="90990"/>
              <exon start="89876" stop="89753"/>
              <exon start="89673" stop="89614"/>
              <exon start="88899" stop="88657"/>
              <exon start="87596" stop="87513"/>
              <exon start="87421" stop="86821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCGTGTCTCAATCTTACTGAAGTCTATCCCGTTTCCCGCAATCTCTCTCCCCGCCACTGGTGCTTTTGTCACTCTCTCTGCAAATCATCTGTTCCAATTATCCATTTTCAAATGCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAG : GAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTG : GTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATG : ATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCG : AGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAG : TTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTG : ATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAG : TGCTTCAGGTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAG : ATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTG : ATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACAGAAGGCCATAAAAGATGTCAAGAATGCCAATGCG : GAAATTAGGAGGAGGAAGCAGCAGGGAGGAAACTTTACTCTGAGAAAAGAAACTGATTTGACTTTACAGTCCTTGGAAGCAAAG : GTTGCTAAGTTGAAAGAGGAACCACCTGTTCCTGTTGACCTATATGTTGCGCACAACACTCGAGTTTTGGTTATAACTGGTCCTAATACTGGGGGTAAAACCATTTGCTTGAAGACTGTGGGTTTGGCTGCTTTGATGGCAAAATCCGGTCAGCACAAGTACTATATATTTATACATTATACTTTGTTCATCAAGTCAACTCACAAATGAAAACTTTCCTTGTACCTCAATATATCTACTAGACATTATATATTAAAACATCAAAAGTCATCAGTTACCACTATCCTATGCAAAGAGGCAATTGAGAACCTATCAATAAGTTGAAACGTGCTTAAATTTACTTTCCTGACATTCACATCCATTTTCATTTCTATGCCTTGATATCATCTATTGTTGAATTAGGATTCCCGCCAAATTATTAAATCGGTTTTTCCTGGTCATGTTTCTTGTTCCTTCATAAATCATATGCTACTTATACAAACACAAACTCATCCTCCATTACGACCTGCAACTTCACAAGTTTTTTGAAATTTTTTTCGTGAAGATGGTGTCAAGGCCAACTAACACGCCTCAGCCTTTCCACTAGGTACATGCATCCTTC</gDNA_template>
            <first_frame> W  R  V  S  I  L  L  K  S  I  P  F  P  A  I  S  L  P  A  T  G  A  F  V  T  L  S  A  N  H  L  F  Q  L  S  I  F  K  C  M  M  L  L  S  V  S  L  L  P  N  S  S  S  S  F  A  T  V  A  F  A  F  P  K  V  P  G  G  F  R  Q  S  I  R  I  K  V  H  A  F  L  N  K  P  L  E  S  S  S  D  Q  P  S  V  I  L  D  S  L  R  V  L  E  W  D  K  L  C  D  S  V  A  A  F  A  G  T  S  L  G  K  E  A  L  K  :  E  Q  L  G  Y  L  N  Q  T  F  E  E  S  L  G  L  L  E  E  T  N  A  A  V  E  M  N  K  Y  G  A  M  V  D  F  N  G  I  D  I  E  L  :  V  K  T  A  I  R  V  A  R  H  G  F  P  V  S  G  T  E  A  L  N  V  V  A  L  L  Q  F  V  E  M  L  Q  A  N  V  K  A  A  V  K  Q  D  A  E  W  Y  Q  R  F  M  P  L  T  E  M  :  I  M  E  L  T  I  S  K  S  L  V  R  F  I  Q  Q  L  V  D  E  D  G  S  V  K  D  S  A  :  S  S  A  L  K  Q  S  R  D  Q  V  R  L  L  E  R  K  :  L  Y  Q  L  M  E  N  I  I  R  N  G  M  E  E  A  S  A  V  :  M  V  H  Y  I  R  I  *  S  A  N  E  L  *  G  A  T  V  I  Q  :  C  F  R  Y  W  K  C  S  R  T  S  L  S  S  S  V  E  *  C  T  P  A  S  *  G  I  C  V  K  G  *  G  *  C  A  P  E  D  N  T  E   : D  A  R  R  N  *  L  Y  *  K  H  F  Q  H  D  G  *  A  G  C   : D  Q  R  *  S  T  I  W  S  C  I  W  R  C  L  S  *  F  I  F  A  T  R  T  G  *  L  C  S  Y  *  C  F  T  G  R  K  N  L  S  G  I  A  S  Y  T  E  E  M  D  N  V  S  A  K  S  L  S  S  F  I  T  S  K  A  S  A  G  S  T  E  G  H  K  R  C  Q  E  C  Q  C   : G  N  *  E  E  E  A  A  G  R  K  L  Y  S  E  K  R  N  *  F  D  F  T  V  L  G  S  K   : G  C  *  V  E  R  G  T  T  C  S  C  *  P  I  C  C  A  Q  H  S  S  F  G  Y  N  W  S  *  Y  W  G  *  N  H  L  L  E  D  C  G  F  G  C  F  D  G  K  I  R  S  A  Q  V  L  Y  I  Y  T  L  Y  F  V  H  Q  V  N  S  Q  M  K  T  F  L  V  P  Q  Y  I  Y  *  T  L  Y  I  K  T  S  K  V  I  S  Y  H  Y  P  M  Q  R  G  N  *  E  P  I  N  K  L  K  R  A  *  I  Y  F  P  D  I  H  I  H  F  H  F  Y  A  L  I  S  S  I  V  E  L  G  F  P  P  N  Y  *  I  G  F  S  W  S  C  F  L  F  L  H  K  S  Y  A  T  Y  T  N  T  N  S  S  S  I  T  T  C  N  F  T  S  F  L  K  F  F  S  *  R  W  C  Q  G  Q  L  T  R  L  S  L  S  T  R  Y  M  H  P   </first_frame>
            <second_frame>  G  V  S  Q  S  Y  *  S  L  S  R  F  P  Q  S  L  S  P  P  L  V  L  L  S  L  S  L  Q  I  I  C  S  N  Y  P  F  S  N  A  *  C  S  S  Q  S  H  C  F  P  I  H  H  R  H  S  P  P  *  H  L  L  S  Q  K  F  P  A  V  S  G  S  P  F  E  S  R  S  M  P  S  *  T  N  H  W  N  R  A  P  I  N  H  R  *  F  *  T  V  S  G  S  S  N  G  T  N  Y  A  I  R  S  L  P  S  P  V  L  P  *  A  K  K  L  S  R :   N  N  *  V  I  *  I  K  H  L  K  R  V  L  D  S  *  R  K  P  M  R  L  W  R  *  I  S  T  V  P  W  W  I  L  M  A  L  I  L  S  W :   L  K  R  P  Y  G  L  H  A  M  V  F  L  S  V  G  L  K  H  *  M  L  *  H  Y  C  S  L  W  K  C  C  R  Q  M  S  K  L  Q  S  S  K  T  Q  N  G  I  S  V  L  C  L  S  Q  K  * :   L  W  N  *  P  *  A  N  H  *  *  G  S  Y  N  N  *  L  M  K  M  V  L  S  R  I  L  R :   A  L  L  *  N  N  L  V  I  K  F  A  F  L  K  E  S :   Y  T  S  *  W  K  T  *  S  G  T  A  W  K  K  H  L  L  * :   W  C  I  I  S  G  F  N  Q  R  T  S  F  E  G  L  L  L  S  S :   A  S  G  T  G  S  V  L  E  P  L  S  A  V  P  L  N  D  A  L  Q  Q  A  K  A  S  V  S  K  A  E  V  D  V  L  L  K  I  T  Q  K  :  M  Q  E  E  I  D  Y  I  E  S  I  F  S  M  M  V  R  L  D  V  :  I  N  A  R  A  R  Y  G  L  A  F  G  G  A  C  P  D  L  F  L  Q  Q  E  Q  D  S  F  V  A  T  D  A  S  L  D  A  R  T  S  V  A  L  H  P  T  R  K  K  W  T  M  Y  L  P  K  A  Y  H  P  L  L  L  Q  K  H  Q  Q  A  L  Q  K  A  I  K  D  V  K  N  A  N  A  :  E  I  R  R  R  K  Q  Q  G  G  N  F  T  L  R  K  E  T  D  L  T  L  Q  S  L  E  A  K  :  V  A  K  L  K  E  E  P  P  V  P  V  D  L  Y  V  A  H  N  T  R  V  L  V  I  T  G  P  N  T  G  G  K  T  I  C  L  K  T  V  G  L  A  A  L  M  A  K  S  G  Q  H  K  Y  Y  I  F  I  H  Y  T  L  F  I  K  S  T  H  K  *  K  L  S  L  Y  L  N  I  S  T  R  H  Y  I  L  K  H  Q  K  S  S  V  T  T  I  L  C  K  E  A  I  E  N  L  S  I  S  *  N  V  L  K  F  T  F  L  T  F  T  S  I  F  I  S  M  P  *  Y  H  L  L  L  N  *  D  S  R  Q  I  I  K  S  V  F  P  G  H  V  S  C  S  F  I  N  H  M  L  L  I  Q  T  Q  T  H  P  P  L  R  P  A  T  S  Q  V  F  *  N  F  F  R  E  D  G  V  K  A  N  *  H  A  S  A  F  P  L  G  T  C  I  L  </second_frame>
            <third_frame>   A  C  L  N  L  T  E  V  Y  P  V  S  R  N  L  S  P  R  H  W  C  F  C  H  S  L  C  K  S  S  V  P  I  I  H  F  Q  M  H  D  A  P  L  S  L  T  A  S  Q  F  I  I  V  I  R  H  R  S  I  C  F  P  K  S  S  R  R  F  Q  A  V  H  S  N  Q  G  P  C  L  P  K  Q  T  T  G  I  E  L  R  S  T  I  G  D  S  R  Q  S  Q  G  P  R  M  G  Q  I  M  R  F  G  R  C  L  R  R  Y  F  L  R  Q  R  S  S  Q   : G  T  T  R  L  S  E  S  N  I  *  R  E  S  W  T  L  R  G  N  Q  C  G  C  G  D  E  *  V  R  C  H  G  G  F  *  W  H  *  Y  *  A   : G  *  N  G  H  T  G  C  T  P  W  F  S  C  Q  W  D  *  S  I  E  C  C  S  T  T  A  V  C  G  N  A  A  G  K  C  Q  S  C  S  Q  A  R  R  R  M  V  S  A  F  Y  A  S  H  R  N   : D  Y  G  T  N  H  K  Q  I  T  S  E  V  H  T  T  T  S  *  *  R  W  F  C  Q  G  F  C   : E  L  C  F  E  T  I  S  *  S  S  S  P  S  *  K  K   : V  I  P  V  D  G  K  H  N  Q  E  R  H  G  R  S  I  C  C   : D  G  A  L  Y  Q  D  L  I  S  E  R  A  L  R  G  Y  C  Y  P   : V  L  Q  V  L  E  V  F  S  N  L  S  Q  Q  F  R  *  M  M  H  S  S  K  L  R  H  L  C  Q  R  L  R  L  M  C  S  *  R  *  H  R  R :   C  K  K  K  L  I  I  L  K  A  F  S  A  *  W  L  G  W  M  * :   S  T  L  E  H  D  M  V  L  H  L  E  V  L  V  L  I  Y  F  C  N  K  N  R  I  A  L  *  L  L  M  L  H  W  T  Q  E  P  Q  W  H  C  I  L  H  G  R  N  G  Q  C  I  C  Q  K  L  I  I  L  Y  Y  F  K  S  I  S  R  L  Y  R  R  P  *  K  M  S  R  M  P  M  R :   K  L  G  G  G  S  S  R  E  E  T  L  L  *  E  K  K  L  I  *  L  Y  S  P  W  K  Q  R :   L  L  S  *  K  R  N  H  L  F  L  L  T  Y  M  L  R  T  T  L  E  F  W  L  *  L  V  L  I  L  G  V  K  P  F  A  *  R  L  W  V  W  L  L  *  W  Q  N  P  V  S  T  S  T  I  Y  L  Y  I  I  L  C  S  S  S  Q  L  T  N  E  N  F  P  C  T  S  I  Y  L  L  D  I  I  Y  *  N  I  K  S  H  Q  L  P  L  S  Y  A  K  R  Q  L  R  T  Y  Q  *  V  E  T  C  L  N  L  L  S  *  H  S  H  P  F  S  F  L  C  L  D  I  I  Y  C  *  I  R  I  P  A  K  L  L  N  R  F  F  L  V  M  F  L  V  P  S  *  I  I  C  Y  L  Y  K  H  K  L  I  L  H  Y  D  L  Q  L  H  K  F  F  E  I  F  F  V  K  M  V  S  R  P  T  N  T  P  Q  P  F  H  *  V  H  A  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94186" stop="93812"/>
                    <exon start="93623" stop="93498"/>
                    <exon start="93330" stop="93163"/>
                    <exon start="93079" stop="92996"/>
                    <exon start="92644" stop="92594"/>
                    <exon start="91320" stop="91264"/>
                    <exon start="91049" stop="91026"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WRVSILLKSIPFPAISLPATGAFVTLSANHLFQLSIFKCMMLLSVSLLPNSSSSFATVAFAFPKVPGGFRQSIRIKVHAFLNKPLESSSDQPSVILDSLRVLEWDKLCDSVAAFAGTSLGKEALKEQLGYLNQTFEESLGLLEETNAAVEMNKYGAMVDFNGIDIELVKTAIRVARHGFPVSGTEALNVVALLQFVEMLQANVKAAVKQDAEWYQRFMPLTEMIMELTISKSLVRFIQQLVDEDGSVKDSASSALKQSRDQVRLLERKLYQLMENIIRNGMEEASAVMVHYIRI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91048" stop="90990"/>
                    <exon start="89876" stop="89753"/>
                    <exon start="89673" stop="89614"/>
                    <exon start="88899" stop="88657"/>
                    <exon start="87596" stop="87513"/>
                    <exon start="87421" stop="87212"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WCIISGFNQRTSFEGLLLSSASGTGSVLEPLSAVPLNDALQQAKASVSKAEVDVLLKITQKMQEEIDYIESIFSMMVRLDVINARARYGLAFGGACPDLFLQQEQDSFVATDASLDARTSVALHPTRKKWTMYLPKAYHPLLLQKHQQALQKAIKDVKNANAEIRRRKQQGGNFTLRKETDLTLQSLEAKVAKLKEEPPVPVDLYVAHNTRVLVITGPNTGGKTICLKTVGLAALMAKSGQHKYYIFIHYTLFIKSTHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="98832" PGL_stop="99688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98832" e_stop="99688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98832" e_stop="99688" e_length="857"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98904" stop="99265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTAATTAAACTTGTCATCCAACAAAAACAGCAAGTTTTTCAATTCATCCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTGGGTGTTCAACTTATATATTGTATGCGGGTTCTTTCCTTTACTACAATCACCACAAGCATCAAGTGTTTGTGGTAGTGGCCGGCGGTCTCCTCGGTGTTGGCGCCGGCCTACTCTGGGCTGCCCAGGGAGCTATTATGACATCTTACCCGCCACATGACAGGAAGGGTACTTATATCTCTATATTTTGGAGTATTTTCAACATGGGTGGTGTTATTGGTGGTCTTATACCGTTTGTATCCAACTATAATAGAACTACCGCGGCCTCTGTTAATGATGGTACATATATTGGATTTATGTTCTTCATGGCTATCGGAACGGTTCTTTCATTAGCGATTTTGCATCCTAGTAAGGTCATTAGAAACGATGGTTCTTCGTGTACTAATATCAAGTACTCGAGTGTGTCTGTGGAATTAATTCAAATTCTCAAA</gDNA_template>
            <first_frame> V  N  *  T  C  H  P  T  K  T  A  S  F  S  I  H  P  I  L  A  S  K  V  P  N  L  I  Q  I  P  K  F  E  D  L  F  F  S  S  F  I  C  F  N  L  R  L  S  Q  A  K  A  L  W  E  M  K  M  V  Y  L  I  H  L  R  T  I  Q  F  S  G  T  I  R  H  W  F  R  F  V  *  L  D  *  Y  V  F  V  V  Q  G  C  S  M  R  S  L  E  W  V  V  V  V  K  S  T  T  R  R  L  T  T  P  T  P  H  S  T  Q  L  S  L  F  L  G  Y  W  V  V  E  F  T  T  F  *  V  Q  K  R  L  C  L  L  G  V  Q  L  I  Y  C  M  R  V  L  S  F  T  T  I  T  T  S  I  K  C  L  W  *  W  P  A  V  S  S  V  L  A  P  A  Y  S  G  L  P  R  E  L  L  *  H  L  T  R  H  M  T  G  R  V  L  I  S  L  Y  F  G  V  F  S  T  W  V  V  L  L  V  V  L  Y  R  L  Y  P  T  I  I  E  L  P  R  P  L  L  M  M  V  H  I  L  D  L  C  S  S  W  L  S  E  R  F  F  H  *  R  F  C  I  L  V  R  S  L  E  T  M  V  L  R  V  L  I  S  S  T  R  V  C  L  W  N  *  F  K  F  S   </first_frame>
            <second_frame>  L  I  K  L  V  I  Q  Q  K  Q  Q  V  F  Q  F  I  Q  S  L  L  P  K  F  P  I  *  S  K  F  P  N  L  R  I  Y  F  S  H  L  S  S  V  S  I  *  D  S  H  R  P  K  R  Y  G  R  *  K  W  F  T  *  F  I  S  E  P  F  N  F  Q  V  Q  F  A  T  G  S  G  L  F  D  W  I  S  M  F  L  L  S  R  D  V  Q  C  A  L  W  N  G  W  W  W  S  S  R  P  H  G  V  *  Q  R  Q  H  R  T  L  H  S  F  H  Y  F  W  D  I  G  W  W  N  L  Q  H  F  R  S  K  K  D  S  V  Y  W  V  F  N  L  Y  I  V  C  G  F  F  P  L  L  Q  S  P  Q  A  S  S  V  C  G  S  G  R  R  S  P  R  C  W  R  R  P  T  L  G  C  P  G  S  Y  Y  D  I  L  P  A  T  *  Q  E  G  Y  L  Y  L  Y  I  L  E  Y  F  Q  H  G  W  C  Y  W  W  S  Y  T  V  C  I  Q  L  *  *  N  Y  R  G  L  C  *  *  W  Y  I  Y  W  I  Y  V  L  H  G  Y  R  N  G  S  F  I  S  D  F  A  S  *  *  G  H  *  K  R  W  F  F  V  Y  *  Y  Q  V  L  E  C  V  C  G  I  N  S  N  S  Q  </second_frame>
            <third_frame>   *  L  N  L  S  S  N  K  N  S  K  F  F  N  S  S  N  P  C  F  Q  S  S  Q  F  N  P  N  S  Q  I  *  G  S  I  F  L  I  F  H  L  F  Q  S  E  T  L  T  G  Q  S  V  M  G  D  E  N  G  L  P  N  S  S  P  N  H  S  I  F  R  Y  N  S  P  L  V  Q  V  C  L  I  G  L  V  C  F  C  C  P  G  M  F  N  A  L  S  G  M  G  G  G  G  Q  V  D  H  T  A  S  N  N  A  N  T  A  L  Y  T  A  F  T  I  F  G  I  L  G  G  G  I  Y  N  I  L  G  P  K  K  T  L  F  I  G  C  S  T  Y  I  L  Y  A  G  S  F  L  Y  Y  N  H  H  K  H  Q  V  F  V  V  V  A  G  G  L  L  G  V  G  A  G  L  L  W  A  A  Q  G  A  I  M  T  S  Y  P  P  H  D  R  K  G  T  Y  I  S  I  F  W  S  I  F  N  M  G  G  V  I  G  G  L  I  P  F  V  S  N  Y  N  R  T  T  A  A  S  V  N  D  G  T  Y  I  G  F  M  F  F  M  A  I  G  T  V  L  S  L  A  I  L  H  P  S  K  V  I  R  N  D  G  S  S  C  T  N  I  K  Y  S  S  V  S  V  E  L  I  Q  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98930" stop="99688"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSIFLIFHLFQSETLTGQSVMGDENGLPNSSPNHSIFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDHTASNNANTALYTAFTIFGILGGGIYNILGPKKTLFIGCSTYILYAGSFLYYNHHKHQVFVVVAGGLLGVGAGLLWAAQGAIMTSYPPHDRKGTYISIFWSIFNMGGVIGGLIPFVSNYNRTTAASVNDGTYIGFMFFMAIGTVLSLAILHPSKVIRNDGSSCTNIKYSSVSVELIQILK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="100025" PGL_stop="100628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100025" e_stop="100146"/>
            <exon e_start="100236" e_stop="100628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100025" e_stop="100146" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100147" i_stop="100235" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100236" e_stop="100628" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100025" stop="100146"/>
              <exon start="100236" stop="100628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTCTAAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAG : ATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTAATCGTCTTCATTCTCCAGTAA</gDNA_template>
            <first_frame> G  S  K  F  A  G  P  F  L  L  Y  F  S  Y  G  L  L  D  A  M  F  Q  S  M  V  Y  W  V  I  G  A  L  A  D  D  S  E  V  L  S  R :   Y  T  G  F  Y  K  G  I  Q  S  A  G  A  A  V  A  W  Q  V  D  S  H  T  V  P  F  M  N  Q  L  I  A  N  W  A  L  T  T  I  S  F  P  L  L  V  A  L  V  V  L  A  V  K  D  D  N  K  D  E  E  G  A  T  K  E  A  S  I  T  S  N  R  D  I  S  T  T  V  D  Y  P  N  K  E  *  G  I  V  Y  R  I  Y  N  L  V  I  T  T  I  V  E  F  K  E  L  F  C  K  L  W  T  I  N  H  S  E  I  S  L  L  M  F  I  *  S  S  S  F  S  S   </first_frame>
            <second_frame>  V  L  N  L  Q  V  H  S  C  C  I  L  V  M  D  Y  S  M  P  C  F  R  A  W  S  I  G  L  *  E  P  W  Q  M  I  L  R  F  S  A   : D  I  L  A  S  I  K  E  Y  K  V  Q  V  Q  P  L  L  G  K  W  I  H  I  L  S  H  S  *  T  S  L  S  R  I  G  H  *  Q  P  L  V  F  H  Y  W  *  L  L  *  C  *  L  *  R  M  T  T  K  M  K  R  E  Q  L  R  K  P  P  L  L  Q  T  A  T  L  V  L  Q  *  T  T  P  I  R  N  K  E  *  F  T  E  F  I  I  *  S  L  L  P  *  *  S  L  K  N  C  S  V  N  C  G  L  S  T  T  V  K  F  L  C  *  C  L  F  N  R  L  H  S  P  V  </second_frame>
            <third_frame>   F  *  I  C  R  S  I  L  V  V  F  *  L  W  I  T  R  C  H  V  S  E  H  G  L  L  G  Y  R  S  L  G  R  *  F  *  G  S  Q  Q  :  I  Y  W  L  L  *  R  N  T  K  C  R  C  S  R  C  L  A  S  G  F  T  Y  C  P  I  H  E  P  A  Y  R  E  L  G  I  N  N  H  *  F  S  I  T  G  S  S  C  S  V  S  C  E  G  *  Q  Q  R  *  R  G  S  N  *  G  S  L  H  Y  F  K  P  R  H  *  Y  Y  S  R  L  P  Q  *  G  I  R  N  S  L  Q  N  L  *  F  S  H  Y  Y  H  S  R  V  *  R  T  V  L  *  I  V  D  Y  Q  P  Q  *  N  F  F  A  N  V  Y  L  I  V  F  I  L  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100025" stop="100146"/>
                    <exon start="100236" stop="100491"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSKFAGPFLLYFSYGLLDAMFQSMVYWVIGALADDSEVLSRYTGFYKGIQSAGAAVAWQVDSHTVPFMNQLIANWALTTISFPLLVALVVLAVKDDNKDEEGATKEASITSNRDISTTVDYPNKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="107105" PGL_stop="107833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107105" e_stop="107833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="107105" e_stop="107833" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107105" stop="107833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTATCTTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTGTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCGTCGGAATCCTGCCCTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTGTGAGGTGGGAAACGGAGGTTCTGCTCCGGTTACGGGTCAAGCGCTATTGTTGATTCACATTGTTTGGCTTGTGTTACTTGGTTTCGTCGGGCTGTTTGGGCTGCTATGATCGATCAGGTTTCGTTGATTGCTTGATTTAGGGTTAGACTTGATAGGATGATTTTTTTTGTATAACATACCTGTAACTTCTGTATGTATGAGGGGAATATACGGCTAGATGATTTCAACTGTGTCCTTGTTTTTCTTTTGTTCGATTAATACAATTTTAGGAGATTTAGAT</gDNA_template>
            <first_frame> K  K  R  D  T  L  P  L  I  I  G  N  P  Q  N  F  N  S  R  V  F  D  F  F  N  *  V  F  C  *  K  R  K  A  S  F  S  S  I  F  *  E  R  L  A  G  K  K  I  *  T  N  I  V  S  M  E  F  L  R  I  S  A  F  Q  P  I  F  V  F  L  L  I  S  V  I  Y  F  P  V  T  V  R  S  D  E  I  I  P  L  L  L  P  S  E  Q  V  N  Q  D  I  C  P  T  T  P  S  P  S  E  S  C  P  I  N  C  F  R  P  D  P  V  C  G  V  N  G  V  T  Y  W  C  G  C  P  D  A  H  C  A  G  V  R  V  V  K  S  G  I  C  E  V  G  N  G  G  S  A  P  V  T  G  Q  A  L  L  L  I  H  I  V  W  L  V  L  L  G  F  V  G  L  F  G  L  L  *  S  I  R  F  R  *  L  L  D  L  G  L  D  L  I  G  *  F  F  L  Y  N  I  P  V  T  S  V  C  M  R  G  I  Y  G  *  M  I  S  T  V  S  L  F  F  F  C  S  I  N  T  I  L  G  D  L  D </first_frame>
            <second_frame>  K  K  E  I  L  Y  L  *  S  S  E  I  P  K  I  S  I  L  G  F  S  I  S  S  T  R  F  S  V  K  R  E  R  R  A  F  L  L  Y  S  K  K  G  S  P  E  K  K  F  K  Q  I  *  Y  P  W  N  F  L  E  F  L  L  F  N  L  S  S  C  S  C  S  S  L  S  S  T  S  R  S  P  S  V  Q  M  K  S  S  R  F  C  C  L  P  N  K  *  I  K  T  F  A  L  R  R  R  L  R  R  N  P  A  L  L  I  A  S  D  P  T  R  S  A  V  L  T  V  *  R  T  G  V  V  A  P  T  H  I  V  L  V  C  V  L  *  N  Q  G  S  V  R  W  E  T  E  V  L  L  R  L  R  V  K  R  Y  C  *  F  T  L  F  G  L  C  Y  L  V  S  S  G  C  L  G  C  Y  D  R  S  G  F  V  D  C  L  I  *  G  *  T  *  *  D  D  F  F  C  I  T  Y  L  *  L  L  Y  V  *  G  E  Y  T  A  R  *  F  Q  L  C  P  C  F  S  F  V  R  L  I  Q  F  *  E  I  *   </second_frame>
            <third_frame>   K  K  R  Y  F  T  F  D  H  R  K  S  P  K  F  Q  F  S  G  F  R  F  L  Q  L  G  F  L  L  K  E  K  G  E  L  F  F  Y  I  L  R  K  A  R  R  K  K  N  L  N  K  Y  S  I  H  G  I  S  *  N  F  C  F  S  T  Y  L  R  V  P  A  H  L  C  H  L  L  P  G  H  R  P  F  R  *  N  H  P  A  S  V  A  F  R  T  S  E  S  R  H  L  P  Y  D  A  V  S  V  G  I  L  P  Y  *  L  L  P  T  R  P  G  L  R  C  *  R  C  D  V  L  V  W  L  P  R  R  T  L  C  W  C  A  C  C  E  I  R  D  L  *  G  G  K  R  R  F  C  S  G  Y  G  S  S  A  I  V  D  S  H  C  L  A  C  V  T  W  F  R  R  A  V  W  A  A  M  I  D  Q  V  S  L  I  A  *  F  R  V  R  L  D  R  M  I  F  F  V  *  H  T  C  N  F  C  M  Y  E  G  N  I  R  L  D  D  F  N  C  V  L  V  F  L  L  F  D  *  Y  N  F  R  R  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107255" stop="107662"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNIVSMEFLRISAFQPIFVFLLISVIYFPVTVRSDEIIPLLLPSEQVNQDICPTTPSPSESCPINCFRPDPVCGVNGVTYWCGCPDAHCAGVRVVKSGICEVGNGGSAPVTGQALLLIHIVWLVLLGFVGLFGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 38 chains have been computed
$ 
$ memory statistics:
$ 40504 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2131 bytes was the average size of a spliced alignment
$ 20000 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1666 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 46 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:36:19
-->
