<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:29:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202664" ref_strand="+" ref_description="SGN-E202664 [cLEC-19-J5]">
      <seq>taccctaggcataaaagggtcactgtaacgattcaaaaaaaaagaatgatataaataagaataaataggtatttaagggcataattgtcctttcacgttttaaatgaataaataaataaataagtaaataaataaaatagatttgtatttatttattttaaatgttatttgactaattcttgaattagtctcctaatccaaatagtcctctctctctcacgcttcttaactccctctctcacgtcctccatcttcctcacattatttctgacaaaacatcaacagttttcatgcttgaagaactaacaaaaattttttaagcaaaagaaaaagtaatcaaaacgtcaaggctaagagaggtttgtcgagagaggtgtacgttgaagtgaattgggagtgctttggaggagttttccgggtaacaacattaaagtttgaacatcgattaaggtatgagttttcttctctctcggtccctttccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="30147" stop="29095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29843" g_stop="29383" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="484" r_length="461" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E202664" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29843" e_stop="29383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACGATTCAAAAAAAAAAGAATTATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCATGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAACAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAA-TTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTAAAGTTTGAACATCGATTAAGGTATGGGTTTTCTTCTCTCTTGAATCCTTTCCCA</genome_strand>
        <mrna_strand>TGTAACGATTCAAAAAA-AAAGAATGATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAATAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTCCTCCATCTTCCTCACATTATTTCTGACAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAATTTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGCTTTGGAGGAGTTTTCCGGGTAACAACATTAAAGTTTGAACATCGATTAAGGTATGAGTTTTCTTCTCTCTCGGTCCCTTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746979" ref_strand="+" ref_description="SGN-E746979 [GI|47104303]">
      <seq>caaacacctaaattacaccccacttcactcttctctctctttcccttcttctgaaattcaaatctgtaaactgtatatttcacaatccaagaatctcttcatagatgaattctacagattcgattaagacccttttggctactactggcggtgacactgttaagctttttgacctcactttggaaccccgtgatccctgcattcttagctatactccttcccctggattccaagtcaattccgtcaagtggaatcacactaatttggtggtggcaagcgctggagatgacaagaagatatctttgtggaggaaaaatggacagagtttggggactgtaccactggccggcactgatagtgctgacaatatcgaggagtctatttcaacagttaactttagcagcaaagcatcccgatacatatgttctggaggtagtggccaagttatacgaatatgggatttgcagcggaagcgttgcatcaaatggttgaaaggtcataccaatactattagtggtgcaatgtacaattgtaaagatgagcacttagcttctatcagtcttaatgggaatcttatacttcacaaccttgcttctggtgcaaaggctgctgaactcaaggatccaaatgcgcaggttttgagagtgcttgattattctaagattagcaggcatttattggtgacagctggtgatgatggatctatccacctgtgggatacaactggtcgcagccccaaggtttcttggctaaagcagcattctgcaccaacttctggcattagtttctcaccaacaaacgacaagattgttgctagtgttggtatggataagaagttgtacacttttgactcagggtcaagaaggccgacattttgcattccttacgaggcacctttttcttcactggcatttactgatgacggattcactctggcagctggaacaagtagtggccgggtagtattctatgacgttcgtggaaaaccacaacccttgactgttttacgtgcttatggaaattctgaggctgtgacaagtctatgctggcaaagagcaaaacctgtaattgtcaatgaaaacaattgcactacagaaatggctctcctgggcagtgctgtggaggattcaattttgatgcctgacccacttcctgctatgatgtcatcaagcctagcaacttctatgacaacatcaggttcgagaaccactgttcgttcaggttctgtggactcattttcttttccagcaggcattacaggatctacatctgggacaacaggtttatctccatccgaggaaacacccatacgaagtagtttatggaaaggtggatctttggcaagattacatgctcctcgtaacttcaaggatgatatggaagttttttctcctcttgttgaagttcagccaattacaccttcacttgataagttgtgggatgatcaggaaggtttcaaaaaggattttgataagaagtcatctttgctatttccttcttctctaaggtttccccttccagttgagggtggcaatgagaatcgccccatatttgattggaaatcaagttccttacccaaacaggaggatgcttcttttgcacagttgtcttccactccaacatcttctcgtggtgatgattcttcctccataactcctccagaagcttggggtggtgagagattatcggatagattatctcatcttcggcagtcaggaaatatgccttcccgttttgcaatctcgacatctggtcctcttgcaccaggatctatgttatctggattacaggataattttcctgcaactcagagtatcggctctttgactagttctactctaagtttggctaatttgcgcataaaagaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtagcgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttgggggtttattttaccctaatatagtaaaggagtgtgtgatggctgatcaataacagttaagagtgctgttatggttgtgtacagaaagttggctaggccaatttcagaaatttaatgtacagaactacagatcatctaattcactttgatttaaaaaacatccttccaagttggaggaggttattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32068" stop="40090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32368" g_stop="32628" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32629" i_stop="32697" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32698" g_stop="32810" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="374" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34659" g_stop="34919" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="635" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34920" i_stop="35046" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.406" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35047" g_stop="35151" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="740" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35152" i_stop="36010" i_length="859">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36011" g_stop="36076" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="806" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36077" i_stop="36203" i_length="127">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36204" g_stop="36425" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="1028" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36426" i_stop="37387" i_length="962">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37388" g_stop="37942" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1029" r_stop="1583" r_length="555" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37943" i_stop="38291" i_length="349">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38292" g_stop="38888" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1584" r_stop="2180" r_length="597" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="2181" r_stop="2357" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="39344" g_stop="39779" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="2358" r_stop="2793" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2801" polyA_stop="2817"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E746979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2793</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32368" e_stop="32628"/>
          <exon e_start="32698" e_stop="32810"/>
          <exon e_start="34659" e_stop="34919"/>
          <exon e_start="35047" e_stop="35151"/>
          <exon e_start="36011" e_stop="36076"/>
          <exon e_start="36204" e_stop="36425"/>
          <exon e_start="37388" e_stop="37942"/>
          <exon e_start="38292" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAGGTACTTTTGTTTACCTTTTTACTTTTTTCGCTGCAAATCTAAGATAGTTACTTTGTTGTCCTGTTATCGAAATGTAATAATTCCTTAATTTCCAATTTTTTCAATGGATTTTGGCACAGATTTCTTTGAAAATGGTGAATTTTGAGAGGTTAAAGATATGTTGTAGTTTTGACCAACTTCATTTTTACCTCTATTTGCTGCTAAAGTTACAGGAAAATTTGTGCTTTCATATGATAGTTTTTCATTTAGAATGCACTGGGCAGGCCTCAATGATGTTCTCACATATTAGAGAGATTTCTTAAATATTATAGCGTACTGAATAGCACATTTCAAAAAGAGACATTGTAGCACTCTGAAACTATTGTACACATGAGTAGGCTGCTTTTGCCATATACATTTTATCCAAGTTGCTCGGACTCTTCACTTTCGATGCCGCACTAGTGTCGACACAATGTTGGTGTGGTGTGGGATCCGTACGTGATTTGGTCAACCGGTTTCGGGTATTTTGACCCAATTAGAGGGAGAAATTCTGGAAAGGTTTCATGATTTATGTATTCAAAACAAAAGATAAGGTGACATTGAAGAAGATGGAATACCTCGTATATATAAATTTATATTTACTCCCTTTCCTTTTATATCCTGCCATGATTCTCCTTTGGATCAATAGTTTTCTAAAGTTCACCACATAATATCTCATAATTAGGTTTAGTAACTCTAATTTAGATACATCAATTATTTTTAGCTGAATCTCCGCAGTTGTATCCATACATCGATCCGTATCCCTGATCTTAAAATTTAGATCATAGAGGATCTAACCTCTAGATCCGCACCCACATTGGACACCTGCATCTGAGTCCGGCAACTTAGCATTTTATGCAACATGGATACTTCTGGTTGTTCTCATAATACAAAAAAAAAATGGTAGGCTGAAGGGGGGAAATATTTGAGCTGTTTTTATTTATAGTAGTAGCTTCAAAAATTTATTTTTCCCTAATACAGTAATTTCAAATAATGATCATGTTAAATTGCCCTGGGGCATTGATCTAGTGGTAAGATATCAACACATGATGTTTGGGTTAGGTGCACGTCATGGGTTCGAACCCGGTAACAGATAGAAACCTAGTGTTTAACTTTAAAAGGATAGATGGCGGGCCCATTCTCTACCGAGTTTTGAACCATTTGTAGTGGACCTATATATGGGGGATAAAAAGAATTATTATGATAGATTACTCATGTATCATCTAGTACTGTTCTTCTATAGGGGTTCCCCTATTTTCAGATGTTGTACGGTAAGTTCTCAAATACTGTCCTCAGTGTTAAAGCACCAAATGAAAAGTAGACATCAACATGACATTGTTTGAACCATAATAATTTTGTTAAGAGGAAGCCAAACCGATGTCATTTTTGCTAAATTAGAAAAGCGTGTTTGCGAGTGGCTTATAAGAATTCCATAATTTGCTATATTTACTGATCATAAAAGAATACCGTACTTTACAGCTTTTTATGTTGAATGCATTTGCCTGAGATTTTGTGTTCGCCTCTGGGTTTGAATGGGAGAAAGATAGGGTTTGGTCAGGCATAGAATGAATCCTGATTGTTCGATTATCCTATGGCATATATGTTTATGAAAGAAGGATGCTGCATAAATGTGTGCTCTATTGCTATCCTGTGGCAAAAGGTGACGATGATAAGAAGATTGGTTGGAATAAAGTTGGCTTTCTATCCCATCCCCCATTACCTAACATGGGTCTTCGGTATAGGCTGTCAACATTTTTTTGAAGCCCAACTTGTGAAGTGGGCTGTCAATCAATTAATTATCTACAAGTAGTTCATTTCTATCACTTGCAGGAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAGGTTAATTCATTCTTTCCAAGTCCCACTTTGCTGTATAGCATCTTATAGCTGCAATTTGCTTTTGGTTTTTGGAATGATGCTTTCTTTTCTGATGCCATTGTTCTTTGTCTGATTATCACAAGATCAGGTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAGGTTTGTTGACATTCTGGTGTTCTGAGATGATAAAAATTGATTTCATTACATATTGTGTTGTGCCTAGATCTGTATTATTTAAAAGGTTTATAACTGGAGATTAATAGGGAATCCCATTTCTTTCTCCTCGCAATCTGTATTTGCAAGTCAGATCTCATCCACTTATTTGGTATAGGCTAGCTATTGGCTATGACATAGAACATTCTGAAAGAAGAATCACCAATCCATTTGCAACTTACAACTGTTGCTTTTCAGAGGGCTTGACGGTCTTTTACTCATAAAAAGACATTTAGCACTACTCTTTGAGGGTTTGGTAGTCAAAACTCACAGAAAGAATCATTATTACTGCAATATATGCTGTGCTGTTAGAAGCGCTATACGTTATAGTTTGTGGACTTCAAAGTTGGAGTCTGAGCTTGATATGCGACGCTTAAAACACTGAATAATGGTTATGAAGTTTCCAGAGAGTTAATTCGAAACCTCCCAGTCCCTGTCTCAGTACATATTTTGCCTCCCTACCTGCTGACATTCAGAACAATTCATGGTCCTTCTACCTAGGAAAAGAACATGTCATGGTCCTTCCCCGATGCTCTTCTTTTTCCTACTCTTCCTTCTCTCTTTTTTCTTTGAAAGATGAGACCCTCTCTGCAATTCTTTCCACTTCCCATCCTCGGGCATGCTTTCATAGCCATAATGGTTAAATTTGCCAAGTGCAATGGTATCTTACTCTGCATTTTATGTTAATCTTTATAATACCCTGGTATAGTGGTACTCTGGGTTGATGTCTCTCAAGTGTACCTGTCTTGCTTGCTGTGCATCGTTTTATTGGATAACTGATAATTGTTTTTACCTTTAAAAGGTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAGGTTTTTTCTCTATTATACTCATCAACTGGTAGACATATTGTGTACCTGTACTGGAAGAACTGTAAATCAATCCTCTTGCCAAATGATGGAATCATTTACCGGTGTGGTTTTACTGTTATGATTGCAGATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAGGTATTTGATTCTTCTTTTCTTAATAAAGTGTTTTGTGTTAAATAGCAGTTTGTCCTTGACTATGTACTTCTATTATGTCGTTTCATTACCTTGGTTGGCAAAACATGAGAAAGGAAATGAAAAGGAGAGAAAAGATTCAGTTCTTATTAACAAGGATGGAGATATGCGACTGTATAATAAGCCCATATGGAGTTGGTATGCATTTATTCTTAAGTCCACTTGTTGTCTTTAAATTGTTTCATCCGTGATGATAGAGGTGGATATGCATGAAATTGGTAATTGTGCAAGAATGGATGAGGAGATTAGGCGGACAAGTAGGTGACCACGGTTCTTCCAATATGGCATGTAGATTTTGAGAGGTTAGAGATAGCCAGCATTTGCTTCGGGGGAGGGGAGGTAGTCCCACAAGCTATTGACCATCTATGATATGCTCAGGGTGCAGGAATTGGGTACAAAAGTGGCACATCACTTTGTCAGGCATGCCAACCAAATTTCTGGTTGGTCAAATGTGGATAGAATTGAACACATTTCTCAATTTCCTAAAATCAAAGACATTGTTAAGATTCCTTGTTTCTTCCTTGGCTAAATGTTTCTTTGTGGCATTTGTGTATCAATAGTAGACCAATGTCATAATCTGATTATGAGTTGGAAGATGGTATAATGTTGCCTCTTGGCTTGGGCAAGGGAGCTGGTCTGAGAAGCTCTTCCTCTTATTCTCTCTCTCTCTCTCTATCGCTCAGCAAAATTAAACAGCATGGTGTTTCTGTATCTATTTGCATATCAGTATAAATCTACCAATGGAATCCGTGCCGATATTCTGCATCTTTTAGTATGTACTGGCTGACCTTCATATATTTTGTTTATCAGCTTGTTAACTTTAGTTTTGTTCCTCAGTACTGACAGTACCTTTTTTACTACTCTGATTTACTTCCTCTTACTAGAAAAGTATGATGAATTTACAGGCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAGGTTTGTATCTTGTCTGGTTCATGTGCCTACATTTATATTCTTTTGCAAAACAAATTATTTCCTTGGTTGCAGGAAATATGGTGAAAATGTGAGTTGCTCTTCTATATACAAAAATGATTACTTGTTTGTAATTTCCTATGTTGTTGGATGCAAAATGATGCTGTTGATATCTAGTTGAAGTAACTAATTTCTTAAATCCTTCATTCTTGGTTGCTATATAATTTGTGAAGTCAGTTCAAAAAGTGGTGTCAGTATTCTGAAGCTGAAATCAATGACTGGGTTTAGCATTAAAATGCATGAGTTGTTATCTTTCCTTGACAAGTATTTCATATCTTTGATATTCCAGCAGGAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</genome_strand>
        <mrna_strand>CAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTA.....................................................................ATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAG...............................................................................................................................GTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAG...............................................................................................................................ATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAG.............................................................................................................................................................................................................................................................................................................................................................GAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541714" ref_strand="+" ref_description="SGN-E541714 [TUS-62-K9]">
      <seq>caaacacctaaattacaccccacttcactcttctctctctttcccttcttctgaaattcaaatctgtaaactgtatatttcacaatccaagaatctcttcatagatgaattctacagattcgattaagacccttttggctactactggcggtgacactgttaagctttttgacctcactttggaaccccgtgatccctgcattcttagctatactccttcccctggattccaagtcaattccgtcaagtggaatcacactaatttggtggtggcaagcgctggagatgacaagaagatatctttgtggaggaaaaatggacagagtttggggactgtaccactggccggcactgatagtgctgacaatatcgaggagtctatttcaacagttaactttagcagcaaagcatcccgatacatatgttctggaggtagtggccaagttatacgaatatgggatttgcagcggaagcgttgcatcaaatggttgaaaggtcataccaatactattagtggtgcaatgtacaattgtaaagatgagcacttagcttctatcagtcttaatgggaatcttatacttcacaaccttgcttctggtgcaaaggctgctgaactncaggatccaaatgcgcaggttttgagagtgcttgattattctaagattagcangcatttattggtgacagctggtgatgatggatctatccacctgtgggatacaactggtcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32068" stop="35443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32368" g_stop="32628" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32629" i_stop="32697" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32698" g_stop="32810" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="374" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34659" g_stop="34919" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="635" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34920" i_stop="35046" i_length="127">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.406" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35047" g_stop="35143" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="732" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E541714" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32368" e_stop="32628"/>
          <exon e_start="32698" e_stop="32810"/>
          <exon e_start="34659" e_stop="34919"/>
          <exon e_start="35047" e_stop="35143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAGGTACTTTTGTTTACCTTTTTACTTTTTTCGCTGCAAATCTAAGATAGTTACTTTGTTGTCCTGTTATCGAAATGTAATAATTCCTTAATTTCCAATTTTTTCAATGGATTTTGGCACAGATTTCTTTGAAAATGGTGAATTTTGAGAGGTTAAAGATATGTTGTAGTTTTGACCAACTTCATTTTTACCTCTATTTGCTGCTAAAGTTACAGGAAAATTTGTGCTTTCATATGATAGTTTTTCATTTAGAATGCACTGGGCAGGCCTCAATGATGTTCTCACATATTAGAGAGATTTCTTAAATATTATAGCGTACTGAATAGCACATTTCAAAAAGAGACATTGTAGCACTCTGAAACTATTGTACACATGAGTAGGCTGCTTTTGCCATATACATTTTATCCAAGTTGCTCGGACTCTTCACTTTCGATGCCGCACTAGTGTCGACACAATGTTGGTGTGGTGTGGGATCCGTACGTGATTTGGTCAACCGGTTTCGGGTATTTTGACCCAATTAGAGGGAGAAATTCTGGAAAGGTTTCATGATTTATGTATTCAAAACAAAAGATAAGGTGACATTGAAGAAGATGGAATACCTCGTATATATAAATTTATATTTACTCCCTTTCCTTTTATATCCTGCCATGATTCTCCTTTGGATCAATAGTTTTCTAAAGTTCACCACATAATATCTCATAATTAGGTTTAGTAACTCTAATTTAGATACATCAATTATTTTTAGCTGAATCTCCGCAGTTGTATCCATACATCGATCCGTATCCCTGATCTTAAAATTTAGATCATAGAGGATCTAACCTCTAGATCCGCACCCACATTGGACACCTGCATCTGAGTCCGGCAACTTAGCATTTTATGCAACATGGATACTTCTGGTTGTTCTCATAATACAAAAAAAAAATGGTAGGCTGAAGGGGGGAAATATTTGAGCTGTTTTTATTTATAGTAGTAGCTTCAAAAATTTATTTTTCCCTAATACAGTAATTTCAAATAATGATCATGTTAAATTGCCCTGGGGCATTGATCTAGTGGTAAGATATCAACACATGATGTTTGGGTTAGGTGCACGTCATGGGTTCGAACCCGGTAACAGATAGAAACCTAGTGTTTAACTTTAAAAGGATAGATGGCGGGCCCATTCTCTACCGAGTTTTGAACCATTTGTAGTGGACCTATATATGGGGGATAAAAAGAATTATTATGATAGATTACTCATGTATCATCTAGTACTGTTCTTCTATAGGGGTTCCCCTATTTTCAGATGTTGTACGGTAAGTTCTCAAATACTGTCCTCAGTGTTAAAGCACCAAATGAAAAGTAGACATCAACATGACATTGTTTGAACCATAATAATTTTGTTAAGAGGAAGCCAAACCGATGTCATTTTTGCTAAATTAGAAAAGCGTGTTTGCGAGTGGCTTATAAGAATTCCATAATTTGCTATATTTACTGATCATAAAAGAATACCGTACTTTACAGCTTTTTATGTTGAATGCATTTGCCTGAGATTTTGTGTTCGCCTCTGGGTTTGAATGGGAGAAAGATAGGGTTTGGTCAGGCATAGAATGAATCCTGATTGTTCGATTATCCTATGGCATATATGTTTATGAAAGAAGGATGCTGCATAAATGTGTGCTCTATTGCTATCCTGTGGCAAAAGGTGACGATGATAAGAAGATTGGTTGGAATAAAGTTGGCTTTCTATCCCATCCCCCATTACCTAACATGGGTCTTCGGTATAGGCTGTCAACATTTTTTTGAAGCCCAACTTGTGAAGTGGGCTGTCAATCAATTAATTATCTACAAGTAGTTCATTTCTATCACTTGCAGGAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAGGTTAATTCATTCTTTCCAAGTCCCACTTTGCTGTATAGCATCTTATAGCTGCAATTTGCTTTTGGTTTTTGGAATGATGCTTTCTTTTCTGATGCCATTGTTCTTTGTCTGATTATCACAAGATCAGGTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCA</genome_strand>
        <mrna_strand>CAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTA.....................................................................ATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTNCAGGATCCAAATGCGCAG...............................................................................................................................GTTTTGAGAGTGCTTGATTATTCTAAGATTAGCANGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299782" ref_strand="+" ref_description="SGN-E299782 [cLEW-1-C7]">
      <seq>aaacacctttattacacctcacttcactcttctctctctttcccttcttctgaaattcaaatctgtaaactgtatatttcacaatccaagaatctcttcatagatgaattctacagattcgattaagacccttttggctactactggcggtgacactgttaagctttttgacctcactttggaaccccgtgatccctgcattcttagctatactccttcccctggattccaagtcaattccgtcaagtggaatcacactaatttggtggtggcaagcgctggagatgacaagaagatatctttgtggaggaaaaatggacagagtttggggactgtaccactggccggcactgatagtgctgacaatatcgaggagtctatttcaacagttaactttagcagcaaagcatcccgatacatatgttctggaggtagtggccaagttatacgaatatgggatttgcagcggaagcgttgcatcaaatggttgaaaggtcataccaatactattagtggtgcaatgtacaattgtaaagatgagcacttagcttctatcagtcttaatgggaatcttatacttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32069" stop="35168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32369" g_stop="32628" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32629" i_stop="32697" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32698" g_stop="32810" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="373" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34659" g_stop="34868" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="583" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E299782" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32369" e_stop="32628"/>
          <exon e_start="32698" e_stop="32810"/>
          <exon e_start="34659" e_stop="34868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAGGTACTTTTGTTTACCTTTTTACTTTTTTCGCTGCAAATCTAAGATAGTTACTTTGTTGTCCTGTTATCGAAATGTAATAATTCCTTAATTTCCAATTTTTTCAATGGATTTTGGCACAGATTTCTTTGAAAATGGTGAATTTTGAGAGGTTAAAGATATGTTGTAGTTTTGACCAACTTCATTTTTACCTCTATTTGCTGCTAAAGTTACAGGAAAATTTGTGCTTTCATATGATAGTTTTTCATTTAGAATGCACTGGGCAGGCCTCAATGATGTTCTCACATATTAGAGAGATTTCTTAAATATTATAGCGTACTGAATAGCACATTTCAAAAAGAGACATTGTAGCACTCTGAAACTATTGTACACATGAGTAGGCTGCTTTTGCCATATACATTTTATCCAAGTTGCTCGGACTCTTCACTTTCGATGCCGCACTAGTGTCGACACAATGTTGGTGTGGTGTGGGATCCGTACGTGATTTGGTCAACCGGTTTCGGGTATTTTGACCCAATTAGAGGGAGAAATTCTGGAAAGGTTTCATGATTTATGTATTCAAAACAAAAGATAAGGTGACATTGAAGAAGATGGAATACCTCGTATATATAAATTTATATTTACTCCCTTTCCTTTTATATCCTGCCATGATTCTCCTTTGGATCAATAGTTTTCTAAAGTTCACCACATAATATCTCATAATTAGGTTTAGTAACTCTAATTTAGATACATCAATTATTTTTAGCTGAATCTCCGCAGTTGTATCCATACATCGATCCGTATCCCTGATCTTAAAATTTAGATCATAGAGGATCTAACCTCTAGATCCGCACCCACATTGGACACCTGCATCTGAGTCCGGCAACTTAGCATTTTATGCAACATGGATACTTCTGGTTGTTCTCATAATACAAAAAAAAAATGGTAGGCTGAAGGGGGGAAATATTTGAGCTGTTTTTATTTATAGTAGTAGCTTCAAAAATTTATTTTTCCCTAATACAGTAATTTCAAATAATGATCATGTTAAATTGCCCTGGGGCATTGATCTAGTGGTAAGATATCAACACATGATGTTTGGGTTAGGTGCACGTCATGGGTTCGAACCCGGTAACAGATAGAAACCTAGTGTTTAACTTTAAAAGGATAGATGGCGGGCCCATTCTCTACCGAGTTTTGAACCATTTGTAGTGGACCTATATATGGGGGATAAAAAGAATTATTATGATAGATTACTCATGTATCATCTAGTACTGTTCTTCTATAGGGGTTCCCCTATTTTCAGATGTTGTACGGTAAGTTCTCAAATACTGTCCTCAGTGTTAAAGCACCAAATGAAAAGTAGACATCAACATGACATTGTTTGAACCATAATAATTTTGTTAAGAGGAAGCCAAACCGATGTCATTTTTGCTAAATTAGAAAAGCGTGTTTGCGAGTGGCTTATAAGAATTCCATAATTTGCTATATTTACTGATCATAAAAGAATACCGTACTTTACAGCTTTTTATGTTGAATGCATTTGCCTGAGATTTTGTGTTCGCCTCTGGGTTTGAATGGGAGAAAGATAGGGTTTGGTCAGGCATAGAATGAATCCTGATTGTTCGATTATCCTATGGCATATATGTTTATGAAAGAAGGATGCTGCATAAATGTGTGCTCTATTGCTATCCTGTGGCAAAAGGTGACGATGATAAGAAGATTGGTTGGAATAAAGTTGGCTTTCTATCCCATCCCCCATTACCTAACATGGGTCTTCGGTATAGGCTGTCAACATTTTTTTGAAGCCCAACTTGTGAAGTGGGCTGTCAATCAATTAATTATCTACAAGTAGTTCATTTCTATCACTTGCAGGAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCAC</genome_strand>
        <mrna_strand>AAACACCTTTATTACACCTCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTA.....................................................................ATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332243" ref_strand="+" ref_description="SGN-E332243 [cTOD-17-C6]">
      <seq>ttcttctgaaattcaaatctgtaaactgtatatttcacaatccaagaatctcttcatagatgaattctacagattcgattaagacccttttggctactactggcggtgacactgttaagctttttgacctcactttggaaccccgtgatccctgcattcttagctatactccttcccctggattccaagtcaattccgtcaagtggaatcacactagttagtttcccctttctatcatgaatttacattctttttgcaaattcgatttaactttgggtgttgcagatttggtggtggcaagcgctggagatgacaagaagatatctttgtggaggaaaaatggacagagtttggggactgtaccactggccggcactgatagtgctgacaatatcgaggagtctatttcaacagttaactttagcagcaaagcatcccgatacatatgttctggaggtagtggccaagttatacgaatatgggatttgcagcggaagcgttgcatcaaatggttgaaaggtcataccaatactattagtggtgcaatgtacaattgtaaagatgagcacttagcttctatcagtcttaatgggaaatctatacttcacaaccttgcttctggtgcaaaggctgctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32113" stop="35199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32413" g_stop="32810" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34659" g_stop="34899" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="639" r_length="241" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E332243" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32413" e_stop="32810"/>
          <exon e_start="34659" e_stop="34899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAGGTACTTTTGTTTACCTTTTTACTTTTTTCGCTGCAAATCTAAGATAGTTACTTTGTTGTCCTGTTATCGAAATGTAATAATTCCTTAATTTCCAATTTTTTCAATGGATTTTGGCACAGATTTCTTTGAAAATGGTGAATTTTGAGAGGTTAAAGATATGTTGTAGTTTTGACCAACTTCATTTTTACCTCTATTTGCTGCTAAAGTTACAGGAAAATTTGTGCTTTCATATGATAGTTTTTCATTTAGAATGCACTGGGCAGGCCTCAATGATGTTCTCACATATTAGAGAGATTTCTTAAATATTATAGCGTACTGAATAGCACATTTCAAAAAGAGACATTGTAGCACTCTGAAACTATTGTACACATGAGTAGGCTGCTTTTGCCATATACATTTTATCCAAGTTGCTCGGACTCTTCACTTTCGATGCCGCACTAGTGTCGACACAATGTTGGTGTGGTGTGGGATCCGTACGTGATTTGGTCAACCGGTTTCGGGTATTTTGACCCAATTAGAGGGAGAAATTCTGGAAAGGTTTCATGATTTATGTATTCAAAACAAAAGATAAGGTGACATTGAAGAAGATGGAATACCTCGTATATATAAATTTATATTTACTCCCTTTCCTTTTATATCCTGCCATGATTCTCCTTTGGATCAATAGTTTTCTAAAGTTCACCACATAATATCTCATAATTAGGTTTAGTAACTCTAATTTAGATACATCAATTATTTTTAGCTGAATCTCCGCAGTTGTATCCATACATCGATCCGTATCCCTGATCTTAAAATTTAGATCATAGAGGATCTAACCTCTAGATCCGCACCCACATTGGACACCTGCATCTGAGTCCGGCAACTTAGCATTTTATGCAACATGGATACTTCTGGTTGTTCTCATAATACAAAAAAAAAATGGTAGGCTGAAGGGGGGAAATATTTGAGCTGTTTTTATTTATAGTAGTAGCTTCAAAAATTTATTTTTCCCTAATACAGTAATTTCAAATAATGATCATGTTAAATTGCCCTGGGGCATTGATCTAGTGGTAAGATATCAACACATGATGTTTGGGTTAGGTGCACGTCATGGGTTCGAACCCGGTAACAGATAGAAACCTAGTGTTTAACTTTAAAAGGATAGATGGCGGGCCCATTCTCTACCGAGTTTTGAACCATTTGTAGTGGACCTATATATGGGGGATAAAAAGAATTATTATGATAGATTACTCATGTATCATCTAGTACTGTTCTTCTATAGGGGTTCCCCTATTTTCAGATGTTGTACGGTAAGTTCTCAAATACTGTCCTCAGTGTTAAAGCACCAAATGAAAAGTAGACATCAACATGACATTGTTTGAACCATAATAATTTTGTTAAGAGGAAGCCAAACCGATGTCATTTTTGCTAAATTAGAAAAGCGTGTTTGCGAGTGGCTTATAAGAATTCCATAATTTGCTATATTTACTGATCATAAAAGAATACCGTACTTTACAGCTTTTTATGTTGAATGCATTTGCCTGAGATTTTGTGTTCGCCTCTGGGTTTGAATGGGAGAAAGATAGGGTTTGGTCAGGCATAGAATGAATCCTGATTGTTCGATTATCCTATGGCATATATGTTTATGAAAGAAGGATGCTGCATAAATGTGTGCTCTATTGCTATCCTGTGGCAAAAGGTGACGATGATAAGAAGATTGGTTGGAATAAAGTTGGCTTTCTATCCCATCCCCCATTACCTAACATGGGTCTTCGGTATAGGCTGTCAACATTTTTTTGAAGCCCAACTTGTGAAGTGGGCTGTCAATCAATTAATTATCTACAAGTAGTTCATTTCTATCACTTGCAGGAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAAC</genome_strand>
        <mrna_strand>TTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAAATCTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245656" ref_strand="+" ref_description="SGN-E245656 [cLEF-43-L12]">
      <seq>agtattctatgacgttcgtggaaaaccacaacccttgactgttttacgtgcttatggaaattctgaggctgtgacaagtctatgctggcaaagagcaaaacctgtaattgtcaatgaaaacaattgcactacagaaatggctctcctgggcagtgctgtggaggattcaattttgatgcctgacccacttcctgctatgatgtcatcaagcctagcaacttctatgacaacatcaggttcgagaaccactgttcgttcaggttctgtggactcattttcttttccagcaggcattacaggatctacatctgggacaacaggtttatctccatccgaggaaacacccatacgaagtagtttatggaaaggtggatctttggcaagattacatgctcctcgtaacttcaaggatgatatggaagttttttctcctcttgttgaagttcagccaattacaccttcacttgataagttgtgggatgatcaggaaggtttcaaaaaggattttgataagaagtcatctttgctatttccttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36059" stop="38162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36359" g_stop="36425" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36426" i_stop="37387" i_length="962">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37388" g_stop="37862" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="542" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E245656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36359" e_stop="36425"/>
          <exon e_start="37388" e_stop="37862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAGGTATTTGATTCTTCTTTTCTTAATAAAGTGTTTTGTGTTAAATAGCAGTTTGTCCTTGACTATGTACTTCTATTATGTCGTTTCATTACCTTGGTTGGCAAAACATGAGAAAGGAAATGAAAAGGAGAGAAAAGATTCAGTTCTTATTAACAAGGATGGAGATATGCGACTGTATAATAAGCCCATATGGAGTTGGTATGCATTTATTCTTAAGTCCACTTGTTGTCTTTAAATTGTTTCATCCGTGATGATAGAGGTGGATATGCATGAAATTGGTAATTGTGCAAGAATGGATGAGGAGATTAGGCGGACAAGTAGGTGACCACGGTTCTTCCAATATGGCATGTAGATTTTGAGAGGTTAGAGATAGCCAGCATTTGCTTCGGGGGAGGGGAGGTAGTCCCACAAGCTATTGACCATCTATGATATGCTCAGGGTGCAGGAATTGGGTACAAAAGTGGCACATCACTTTGTCAGGCATGCCAACCAAATTTCTGGTTGGTCAAATGTGGATAGAATTGAACACATTTCTCAATTTCCTAAAATCAAAGACATTGTTAAGATTCCTTGTTTCTTCCTTGGCTAAATGTTTCTTTGTGGCATTTGTGTATCAATAGTAGACCAATGTCATAATCTGATTATGAGTTGGAAGATGGTATAATGTTGCCTCTTGGCTTGGGCAAGGGAGCTGGTCTGAGAAGCTCTTCCTCTTATTCTCTCTCTCTCTCTCTATCGCTCAGCAAAATTAAACAGCATGGTGTTTCTGTATCTATTTGCATATCAGTATAAATCTACCAATGGAATCCGTGCCGATATTCTGCATCTTTTAGTATGTACTGGCTGACCTTCATATATTTTGTTTATCAGCTTGTTAACTTTAGTTTTGTTCCTCAGTACTGACAGTACCTTTTTTACTACTCTGATTTACTTCCTCTTACTAGAAAAGTATGATGAATTTACAGGCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTC</genome_strand>
        <mrna_strand>AGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703450" ref_strand="+" ref_description="SGN-E703450 [FA21CB06]">
      <seq>caagttccttacccaaacagcaggaggatgcttcttttgcacagttgtcttccactccaacatcttctcgtggtgatgattcttcctccataactcctccagaagcttggggtggtgagagattatcggatagattatctcatcttcggcagtcaggaaatatgccttcccgttttgcaatctcgacatctggtcctcttgcaccaggatctatgttatctggattacaggataattttcctgcaactcagagtatcggctctttgactagttctactctaagtttggctaatttgcgcataaaagaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37623" stop="39732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37923" g_stop="37942" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37943" i_stop="38288" i_length="346">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38289" g_stop="38888" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="620" r_length="600" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="797" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39344" g_stop="39432" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="886" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E703450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37923" e_stop="37942"/>
          <exon e_start="38289" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCCTTACCCAAACAGGTTTGTATCTTGTCTGGTTCATGTGCCTACATTTATATTCTTTTGCAAAACAAATTATTTCCTTGGTTGCAGGAAATATGGTGAAAATGTGAGTTGCTCTTCTATATACAAAAATGATTACTTGTTTGTAATTTCCTATGTTGTTGGATGCAAAATGATGCTGTTGATATCTAGTTGAAGTAACTAATTTCTTAAATCCTTCATTCTTGGTTGCTATATAATTTGTGAAGTCAGTTCAAAAAGTGGTGTCAGTATTCTGAAGCTGAAATCAATGACTGGGTTTAGCATTAAAATGCATGAGTTGTTATCTTTCCTTGACAAGTATTTCATATCTTTGATATTCCAGCAGGAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCA</genome_strand>
        <mrna_strand>CAAGTTCCTTACCCAAACAG..........................................................................................................................................................................................................................................................................................................................................................CAGGAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275166" ref_strand="+" ref_description="SGN-E275166 [cLEN-9-F2]">
      <seq>ggatgcttcttttgcacagttgtcttccactccaacatcttctcgtggtgatgattcttcctccataactcctccagaagcttggggtggtgagagattatcggatagattatctcatcttcggcagtcaggaaatatgccttcccgttttgcaatctcgacatctggtcctcttgcaccaggatctatgttatctggattacaggataattttcctgcaactcagagtatcggctctttgactagttctactctaagtttggctaatttgcgcataaaagaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37994" stop="39168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38294" g_stop="38868" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E275166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38294" e_stop="38868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTG</genome_strand>
        <mrna_strand>GGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709089" ref_strand="+" ref_description="SGN-E709089 [FA42CF09]">
      <seq>cgcttgcaccaggatctatgttatctggattacaggataattttcctgcaactcagagtatcggctctttgactagttctactctaagtttggctaatttgcgcataaaagaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtaacgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttggggggtttattttaccctaatatataaaaggagtgtgtgatggctgatcaataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38164" stop="39955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38464" g_stop="38888" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="602" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39655" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="915" r_length="313" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E709089" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38464" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTT-GGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACA</genome_strand>
        <mrna_strand>CGCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAACGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGGTTTATTTTACCCTAATATATAAAAGGAGTGTGTGATGGCTGATCAATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331027" ref_strand="+" ref_description="SGN-E331027 [cTOD-6-G23]">
      <seq>ataattttcctgcaactcagagtatcggctctttgactagttctactctaagtttggctaatttgcgcataaaagaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38200" stop="39680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38500" g_stop="38888" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="566" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39380" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="603" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E331027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38500" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAA</genome_strand>
        <mrna_strand>ATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391142" ref_strand="+" ref_description="SGN-E391142 [TUS-47-D14]">
      <seq>agaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38273" stop="39843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38573" g_stop="38888" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="493" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39543" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="693" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E391142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38573" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGT</genome_strand>
        <mrna_strand>AGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204171" ref_strand="+" ref_description="SGN-E204171 [cLEC-13-O1]">
      <seq>gaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaataaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtggtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcgatctcaaaagtccacactgcctgaattgcagcatggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38274" stop="39787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38574" g_stop="38888" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="492" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39487" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="636" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E204171" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38574" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTT</genome_strand>
        <mrna_strand>GAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAATAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTGGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCGATCTCAAAAGTCCACACTGCCTGAATTGCAGCATGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375389" ref_strand="+" ref_description="SGN-E375389 [TUS-15-H6]">
      <seq>gaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38274" stop="39743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38574" g_stop="38888" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="492" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39443" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="592" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E375389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38574" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGT</genome_strand>
        <mrna_strand>GAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391331" ref_strand="+" ref_description="SGN-E391331 [TUS-47-D14](-)">
      <seq>agaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtagcgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttgggggtttattttaccctaatatagtaaaggagtgtgtgatggctgatcaataacagttaagagtgctgttatggttgtgtacagaaagttggctaggccaatttcagaaatttaatgtacagaactacagatcatctaattcactttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38427" stop="40060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38727" g_stop="38888" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="339" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39762" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="758" r_length="419" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E391331" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38727" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATC</genome_strand>
        <mrna_strand>AGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716768" ref_strand="+" ref_description="SGN-E716768 [FB17DH08]">
      <seq>cggtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtagcgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttgggggtttattttaccctaatatagtaaaggagtgtgtgatggctgatcaataacagttaagagtgctgttatggttgtgtacagaaagttggctaggccaatttcagaaatttaatgtacagaactacagatcatctaattcactttgatttaaaaaacatccttccaagttggaggaggtttattcaaaaannaanaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38549" stop="40090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38847" g_stop="38888" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="219" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39779" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="655" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E716768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38847" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</genome_strand>
        <mrna_strand>CGGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541711" ref_strand="+" ref_description="SGN-E541711 [TUS-62-K9](-)">
      <seq>gctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtagcgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttgggggtttattttaccctaatatagtaaaggagtgtgtgatggctgatcaataacagttaagagtgctgttatggttgtgtacagaaagttggctaggccaatttcagaaatttaatgtacagaactacagatcatctaattcactttgatttaaaaaacatccttccaagttggaggaggtttattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38556" stop="40090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38856" g_stop="38888" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="210" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39779" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="646" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="664"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E541711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38856" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</genome_strand>
        <mrna_strand>GCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375388" ref_strand="+" ref_description="SGN-E375388 [TUS-15-H6](-)">
      <seq>ggtgctttccaaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtagcgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttgggggtttattttaccctaatatagtaaaggagtgtgtgatggctgatcaataacagttaagagtgctgttatggttgtgtacagaaagttggctaggccaatttcagaaatttaatgtacagaactacagatcatctaattcactttgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38790" stop="40060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38868" g_stop="38888" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39092" g_stop="39268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="199" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39344" g_stop="39761" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="617" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E375388" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38868" e_stop="38888"/>
          <exon e_start="39092" e_stop="39268"/>
          <exon e_start="39344" e_stop="39761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTTTCC-AAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACAT</genome_strand>
        <mrna_strand>GGTGCTTTCCAAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299783" ref_strand="+" ref_description="SGN-E299783 [cLEW-1-C7](-)">
      <seq>ctctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtagcgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttgggggtttattttaccctaatatagtaaaggagtgtgtgatggctgatcaataacagttaagagtgctgttatggttgtgtacagaaagttggctaggccaatttcagaaatttaatgtacagaactacagatcatctaattcacattgatttaaaaaacatccttccaagttggaggaggtttattcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38886" stop="40090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39186" g_stop="39268" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39344" g_stop="39779" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="519" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="541"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E299783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39186" e_stop="39268"/>
          <exon e_start="39344" e_stop="39779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</genome_strand>
        <mrna_strand>CTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACATTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703029" ref_strand="+" ref_description="SGN-E703029 [FA20BE01]">
      <seq>cctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttacgaaggacctgatttcacggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaggggctagctacttcgtaatgtctgtcaatgatgtcaaaataccctgatttttagtgtttttttttatttttgctatagatgtaccatggccacttaaaatagaatgttggtgaattttatttatacataagagttagccctcgcttttatcagctagttctgtttgcacttgcagcagcaggttgttgcttgttgatgagattgcatttccattgttattgtcaagtcaaatcactttgcgcatgatattgctttcgcttaacatgatttctcaaacatgtattggcttgcatattcatttgtgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42022" stop="39994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41722" g_stop="41426" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41185" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="330" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41184" i_stop="40951" i_length="234">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40950" g_stop="40874" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="407" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40792" g_stop="40294" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="905" r_length="498" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E703029" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41722" e_stop="41426"/>
          <exon e_start="41217" e_stop="41185"/>
          <exon e_start="40950" e_stop="40874"/>
          <exon e_start="40792" e_stop="40294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTCTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAACAATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCT</genome_strand>
        <mrna_strand>CCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAG..........................................................................................................................................................................................................................................ATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTACGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCCTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTCTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAAC-ATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370016" ref_strand="+" ref_description="SGN-E370016 [TUS-26-D8](-)">
      <seq>ttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaggggctagctacttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttatttttgctatagatgtaccatggccacttaaaatagaatgttggtgaattttatttatacataagagttagccctcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41013" stop="40160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40713" g_stop="40460" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="255" polyA_stop="275"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E370016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40713" e_stop="40460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTC</genome_strand>
        <mrna_strand>TTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283626" ref_strand="+" ref_description="SGN-E283626 [cLES-1-M15]">
      <seq>agaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaagggctagcttcttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41443" stop="40231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41143" g_stop="40874" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40792" g_stop="40531" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="532" r_length="262" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E283626" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41143" e_stop="40874"/>
          <exon e_start="40792" e_stop="40531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTT</genome_strand>
        <mrna_strand>AGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAAGGGCTAGCTTCTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311783" ref_strand="+" ref_description="SGN-E311783 [cLEZ-9-O24]">
      <seq>ttgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacgtgagtcttgatgtttaatttaacaaatttcttatctgtttttcattaattactaatatagaatatatatataatcatcagggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaagggctagctacttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41483" stop="40232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41183" g_stop="40532" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E311783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41183" e_stop="40532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTT</genome_strand>
        <mrna_strand>TTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAAGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719613" ref_strand="+" ref_description="SGN-E719613 [FC08BE05]">
      <seq>gggcgattggcggccaatcggccgaattgaagcctcctcttctccctataccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtctctaaaagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttacgaaggacctgatttcacggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42044" stop="40309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41741" g_stop="41426" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="348" r_length="316" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="40874" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="692" r_length="344" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40792" g_stop="40609" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="876" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E719613" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41741" e_stop="41426"/>
          <exon e_start="41217" e_stop="40874"/>
          <exon e_start="40792" e_stop="40609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTT</genome_strand>
        <mrna_strand>CCTCCTCTTCTCCCTATACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTCTCTAAAAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTACGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722632" ref_strand="+" ref_description="SGN-E722632 [FC17DD09]">
      <seq>agggcgattggcggccaatcggccgaattaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtctctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttacgaaggacctgatttcacggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42044" stop="40384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41741" g_stop="41426" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="348" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="40874" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="692" r_length="344" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40792" g_stop="40684" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="801" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E722632" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41741" e_stop="41426"/>
          <exon e_start="41217" e_stop="40874"/>
          <exon e_start="40792" e_stop="40684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGC</genome_strand>
        <mrna_strand>CCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTCTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTACGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348652" ref_strand="+" ref_description="SGN-E348652 [cTOF-30-D9]">
      <seq>ccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacggatttggatgagaacctncaaaagctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42023" stop="40404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41723" g_stop="41426" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="40874" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="642" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40792" g_stop="40704" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="730" r_length="88" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E348652" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41723" e_stop="41426"/>
          <exon e_start="41217" e_stop="40874"/>
          <exon e_start="40792" e_stop="40704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGT</genome_strand>
        <mrna_strand>CCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTNCAAAA-GCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214969" ref_strand="+" ref_description="SGN-E214969 [cLEC-78-F14]">
      <seq>tgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacggatttggatgagaacctccaaaaggctttcccacagtatctggagattagggtatcaagcccagcacaaccaacttcttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41957" stop="40407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41657" g_stop="41426" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="40874" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="576" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40792" g_stop="40707" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="661" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E214969" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41657" e_stop="41426"/>
          <exon e_start="41217" e_stop="40874"/>
          <exon e_start="40792" e_stop="40707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATG</genome_strand>
        <mrna_strand>TGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCCACAGTATCTGGAGATTA-GGGTATCAAGCCCAGCACAACCAACTTCTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391543" ref_strand="+" ref_description="SGN-E391543 [TUS-16-I11]">
      <seq>taaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacggatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42058" stop="40564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="41426" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="40874" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="677" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40792" g_stop="40784" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="686" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E391543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="41426"/>
          <exon e_start="41217" e_stop="40874"/>
          <exon e_start="40792" e_stop="40784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGA</genome_strand>
        <mrna_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC.................................................................................GGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346142" ref_strand="+" ref_description="SGN-E346142 [cTOF-34-A11]">
      <seq>ccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42023" stop="40590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41723" g_stop="41426" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="40890" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="626" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E346142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41723" e_stop="41426"/>
          <exon e_start="41217" e_stop="40890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATG</genome_strand>
        <mrna_strand>CCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272471" ref_strand="+" ref_description="SGN-E272471 [cLEM-19-D12]">
      <seq>aagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatggatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41961" stop="40608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41661" g_stop="41426" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="40908" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="546" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E272471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41661" e_stop="41426"/>
          <exon e_start="41217" e_stop="40908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTG</genome_strand>
        <mrna_strand>AAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATGGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261577" ref_strand="+" ref_description="SGN-E261577 [cLEG-57-J9]">
      <seq>taaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggtttgattttccccaattctctttttcatgtcgcagatgaattttaatactattaattaaaatcgcctaattatggattctaccactgatttgtttctgtttttaggtggattttatggaaaattcatgctgtttttagttttaatcaaaaaaatatatatgttactggattagcagattttgtactgttttttcattgtgattgcaggttgaggaggctcctganggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgancaacggtggtgaggatgatgacgaagggtccaatcagtccatattcctctagttgttagggtgtctaagagaaatgggacctgctttggagtttggtatcacagcttttgctgatgagattgctattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42058" stop="40640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="40940" g_length="819"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="820" r_length="820" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E261577" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="40940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGA-CAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAAT-GGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGA</genome_strand>
        <mrna_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGANGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGANCAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCC-ATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261624" ref_strand="+" ref_description="SGN-E261624 [cLEG-57-P18]">
      <seq>taaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggtttgattttccccaattctctttttcatgtcgcagatgaattttaatactattaattaaaatcgcctaattatggattctaccactgatttgtttctgtttttaggtggattttatggaaaattcatgctgtttttagttttaatcaaaaaaatatatatgttactggattagcagattttgtactgttttttcattgtgattgcaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtcaatcagtccaatattcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42058" stop="40718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="41018" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E261624" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="41018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCT</genome_strand>
        <mrna_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGT-CAATCAGTCCAATATTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270412" ref_strand="+" ref_description="SGN-E270412 [cLEM-1-G5]">
      <seq>tctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42013" stop="40747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41713" g_stop="41426" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41047" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="459" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E270412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41713" e_stop="41426"/>
          <exon e_start="41217" e_stop="41047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGAC</genome_strand>
        <mrna_strand>TCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273002" ref_strand="+" ref_description="SGN-E273002 [cLEM-25-D15]">
      <seq>aaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggaccaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42056" stop="40748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41756" g_stop="41426" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41048" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="502" r_length="171" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E273002" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41756" e_stop="41426"/>
          <exon e_start="41217" e_stop="41048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGA-CAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGA</genome_strand>
        <mrna_strand>AACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACCAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275656" ref_strand="+" ref_description="SGN-E275656 [cLEN-18-C18]">
      <seq>ccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42046" stop="40748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41746" g_stop="41426" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41048" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="491" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E275656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41746" e_stop="41426"/>
          <exon e_start="41217" e_stop="41048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGA</genome_strand>
        <mrna_strand>CCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282494" ref_strand="+" ref_description="SGN-E282494 [cLER-18-G8]">
      <seq>taaaccctatattctctacctatgtgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42027" stop="40748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41727" g_stop="41426" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41048" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="472" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E282494" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41727" e_stop="41426"/>
          <exon e_start="41217" e_stop="41048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGA</genome_strand>
        <mrna_strand>TAAACCCTATATTCTCTACCTATGTGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245412" ref_strand="+" ref_description="SGN-E245412 [cLEF-53-H20]">
      <seq>ccaagttgaagttgaaattccgaaaaaaaagtgaagtctcctattaatagaacatgtagcgtaaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42119" stop="40768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41819" g_stop="41426" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41068" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="544" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E245412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41819" e_stop="41426"/>
          <exon e_start="41217" e_stop="41068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGAC</genome_strand>
        <mrna_strand>CCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207050" ref_strand="+" ref_description="SGN-E207050 [cLEC-30-E4]">
      <seq>aaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42025" stop="40768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41725" g_stop="41426" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41068" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="450" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E207050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41725" e_stop="41426"/>
          <exon e_start="41217" e_stop="41068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGAC</genome_strand>
        <mrna_strand>AACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299922" ref_strand="+" ref_description="SGN-E299922 [cLEW-11-A5]">
      <seq>ttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggacctgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42028" stop="40769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41728" g_stop="41426" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41069" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="453" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E299922" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41728" e_stop="41426"/>
          <exon e_start="41217" e_stop="41069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGA-CTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGA</genome_strand>
        <mrna_strand>TTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACCTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261437" ref_strand="+" ref_description="SGN-E261437 [cLEG-57-B22]">
      <seq>taaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggtttgattttccccaattctctttttcatgtcgcagatgaattttaatactattaattaaaatcgcctaattatggattctaccactgatttgtttctgtttttaggtggattttatggaaaattcatgctgtttttagttttaatcaaaaaaatatatatgttactggattagcagattttgtactgttttttcattgtgattgcaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacnacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42058" stop="40781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="41081" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E261437" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="41081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGA</genome_strand>
        <mrna_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACNACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215064" ref_strand="+" ref_description="SGN-E215064 [cLEC-78-K10]">
      <seq>aaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42025" stop="40781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41725" g_stop="41426" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41081" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="437" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E215064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41725" e_stop="41426"/>
          <exon e_start="41217" e_stop="41081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGA</genome_strand>
        <mrna_strand>AACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370017" ref_strand="+" ref_description="SGN-E370017 [TUS-26-D8]">
      <seq>taaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccaccctttatttttattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggtttgattttccccaattctctttttcatgtcgcagatgaattttaatactattaattaaaatcgcctaattatggattctaccactgatttgtttctgtttttaggtggattttatggaaaattcatgctgtttttagttttaatcaaaaaaatatatatgttactggattagcagattttgtactgttttttcattgtgattgcaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42058" stop="40822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="41122" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E370017" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="41122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATA</genome_strand>
        <mrna_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTTATTTTTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209525" ref_strand="+" ref_description="SGN-E209525 [cLEC-54-H7]">
      <seq>taaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42051" stop="40823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41751" g_stop="41426" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41123" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="421" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E209525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41751" e_stop="41426"/>
          <exon e_start="41217" e_stop="41123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTAT</genome_strand>
        <mrna_strand>TAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284715" ref_strand="+" ref_description="SGN-E284715 [cLES-3-F12]">
      <seq>taaactctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42027" stop="40833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41727" g_stop="41426" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41217" g_stop="41133" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="387" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E284715" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41727" e_stop="41426"/>
          <exon e_start="41217" e_stop="41133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAG</genome_strand>
        <mrna_strand>TAAACTCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258814" ref_strand="+" ref_description="SGN-E258814 [cLEG-50-F22]">
      <seq>taaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggtttgattttccccaattctctttttcatgtcgcagatgaattttaatactattaattaaaatcgcctaattatggattctaccactgatttgtttctgtttttaggtggattttatggaaaattcatgctgtttttagttttaatcaaaaaaatatatatgttactggattagcagattttgtactgttttttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42058" stop="40928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="41228" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E258814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="41228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATT</genome_strand>
        <mrna_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259006" ref_strand="+" ref_description="SGN-E259006 [cLEG-41-C5]">
      <seq>taaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggtttgattttccccaattctctttttcatgtcgcagatgaattttaatactattaattaaaatcgcctaattatggattctaccactgatttgtttctgtttttaggtggattttatggaaaattcatgctgtttttagttttaatcaaaaaaatatatatgttactggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42058" stop="40954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="41254" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E259006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="41254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATT</genome_strand>
        <mrna_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236067" ref_strand="+" ref_description="SGN-E236067 [cLED-16-B18]">
      <seq>ttaaaccctaaattctctacctgtgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccggagggctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaagcccagttctgatgaatcactcctcaaagtcattcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42028" stop="41167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41728" g_stop="41467" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E236067" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41728" e_stop="41467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGT</genome_strand>
        <mrna_strand>TTAAACCCTAAATTCTCTACCTGTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGGAGGGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAAGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264223" ref_strand="+" ref_description="SGN-E264223 [cLEG-70-A4]">
      <seq>taaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42058" stop="41247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="41547" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E264223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="41547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCG</genome_strand>
        <mrna_strand>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344289" ref_strand="+" ref_description="SGN-E344289 [cTOF-16-C12]">
      <seq>aagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactcagaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttatgtttttatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagataacaaggcagacatgctatttatcgagtttgagctagaaacatcagatttgtccactattttaaagaaaaagaaaaattagagtgtcgttggggaaatgaagctataaggcataagcttttcccgtagatttcagcaaatagaaacgtgttttctcagatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43616" stop="42334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43316" g_stop="43236" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="144" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42981" g_stop="42641" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="485" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="486" polyA_stop="497"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E344289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43316" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGATTTGTCCACTATTTTAAAGAAAAAGAAAAATTAGAGTGTCGTTGGGGAAATGAAGCTATAAGGCATAAGCTTTTCCCGTAGATTTCAGCAAATAGAAACGTGTTTTCTCAGATG</genome_strand>
        <mrna_strand>AAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGATTTGTCCACTATTTTAAAGAAAAAGAAAAATTAGAGTGTCGTTGGGGAAATGAAGCTATAAGGCATAAGCTTTTCCCGTAGATTTCAGCAAATAGAAACGTGTTTTCTCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347963" ref_strand="+" ref_description="SGN-E347963 [cTOF-31-P9]">
      <seq>caggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactcagaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttatgtttttatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagataacaaggcagacatgctatttatcgagtttgagctagaaacatcagattttgtccactaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46220" stop="42444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45920" g_stop="45812" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="236" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="385" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="448" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42981" g_stop="42726" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="705" r_length="257" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E347963" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45920" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGA-TTTGTCCACTATTTTAAAGAAAAAGAAAA</genome_strand>
        <mrna_strand>CAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGATTTTGTCCACTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343727" ref_strand="+" ref_description="SGN-E343727 [cTOF-20-D4]">
      <seq>caggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactcagaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttatgtttttatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagataacaaggcagacatgctatttatcgagtttgagctagaaacatcagatttgtccactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46220" stop="42444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45920" g_stop="45812" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="236" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="385" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="448" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42981" g_stop="42743" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="687" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E343727" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45920" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGATTTGTCCACTAT</genome_strand>
        <mrna_strand>CAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGATTTGTCCACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370975" ref_strand="+" ref_description="SGN-E370975 [TUS-29-D15](-)">
      <seq>tgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactcagaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttatgtttttatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagataacaaggcagacatgctatttatcgagtttgagctagaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46153" stop="42455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45853" g_stop="45812" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="169" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="318" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="381" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42981" g_stop="42752" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="611" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E370975" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45853" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGATTT</genome_strand>
        <mrna_strand>TGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370976" ref_strand="+" ref_description="SGN-E370976 [TUS-29-D15]">
      <seq>gttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactcagaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttatgtttttatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagataacaaggcagacatgctatttatcgagtttgagctagaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46152" stop="42455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45852" g_stop="45812" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="168" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="317" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="380" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42981" g_stop="42761" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="601" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="611"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E370976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45852" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAAC</genome_strand>
        <mrna_strand>GTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280273" ref_strand="+" ref_description="SGN-E280273 [cLER-1-C21](-)">
      <seq>agtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggatcttctttgcccttgttcaaggtggcctgtttgagctcgggcgcaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaattctcaaaaaagggttgttgacagacaccactctgcctttactcactgatagtgctcttacacatgtgaggatccctcctgggccaagacttcttattcttgatcatacccaaagggttccggaactcagaaagaaacgaggatgaactcactgcaaaagattaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttatgtttctatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagatatcaaggcagacatgctatttatcgagtttcagctagaaccaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45405" stop="42460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45405" g_stop="45400" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="7" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45399" i_stop="45101" i_length="299">
            <donor d_prob="0.728" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="134" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="0.887" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="284" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="347" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42981" g_stop="42761" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="568" r_length="221" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="579"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E280273" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45405" e_stop="45400"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATT-TCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAAC</genome_strand>
        <mrna_strand>GTCCAG...........................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATCTTCTTTGCCCTTGTTCAAGGTGGCCTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGCAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTCTCAAAAAAGGGTTGTTGACAGACACCACTCTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTACACATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATACCCAAAG......................................................................................................GGTTCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATTAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTCTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATATCAAGGCAGACATGCTATTTATCGAGTTTCAGCTAGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222435" ref_strand="+" ref_description="SGN-E222435 [cLEL-16-C21](-)">
      <seq>tgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactcagaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttatgtttttatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagataacaaggcagacatgctatttatcgagtttgagctagaaaaaaaaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43620" stop="42460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43320" g_stop="43236" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="148" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42981" g_stop="42761" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="369" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="389"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E222435" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43320" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAAC</genome_strand>
        <mrna_strand>TGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222505" ref_strand="+" ref_description="SGN-E222505 [cLEL-16-C21](-)">
      <seq>tttgcctttactcactgatagtgctcttaaaaatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaattcagaaaaaacctaggatgaactctctgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgaaaagtagtgacagtttcatgttatgtttttatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagataacaaggcagacatgctcccccccgagtttgagctagaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43556" stop="42455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43256" g_stop="43236" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="84" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42981" g_stop="42761" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="305" r_length="221" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="306" polyA_stop="325"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E222505" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43256" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAAC</genome_strand>
        <mrna_strand>TTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAAAAATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAATTCAGAAAAAACCTAGGATGAACTCTCTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAAAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTCCCCCCCGAGTTTGAGCTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297936" ref_strand="+" ref_description="SGN-E297936 [cLET-38-F1]">
      <seq>gaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttatgtttttatgatgttccagtgaactaggttattatggaacttctttgagtgtaagttcttgccatcagataacaaggcagacatgctatttatcgagtttgagctcgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43267" stop="42455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42967" g_stop="42761" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="208" polyA_stop="223"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E297936" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42967" e_stop="42761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAAC</genome_strand>
        <mrna_strand>GAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698669" ref_strand="+" ref_description="SGN-E698669 [FA07AH05]">
      <seq>ccggttcaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactccagaaagaaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46807" stop="42571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46508" g_stop="46286" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="339" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="466" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="615" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="678" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42981" g_stop="42871" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="791" r_length="113" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E698669" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46508" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACT-CAGAAAG-AAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTAT</genome_strand>
        <mrna_strand>CCGGTTCAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCCAGAAAGAAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280272" ref_strand="+" ref_description="SGN-E280272 [cLER-1-C21]">
      <seq>gttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactcagaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttgagaagtagtgacagtttcatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46152" stop="42571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45852" g_stop="45812" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="168" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="317" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="380" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42981" g_stop="42871" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="491" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E280272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45852" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTAT</genome_strand>
        <mrna_strand>GTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705711" ref_strand="+" ref_description="SGN-E705711 [FA27DG03]">
      <seq>gagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcatatacaaagggatccggaactcagaaagaaacgaggatgaactcactgcaaaagatgaagttttcctttgtcggaaagacctattctgtaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46923" stop="42596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46623" g_stop="46286" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="454" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="581" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="730" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43146" g_stop="43084" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="793" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42981" g_stop="42896" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="879" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E705711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46623" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43084"/>
          <exon e_start="42981" e_stop="42896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGTGAAATAATGTTCTGCGTGAAGTAACTTTCTGTTTAATTAACTGTTCAGTGATGAAAATCCTTAAATTGCTTTTCGGGATTATAATTTTTTTTGGCTGTAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTG</genome_strand>
        <mrna_strand>GAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG......................................................................................................GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723053" ref_strand="+" ref_description="SGN-E723053 [FC19AH01]">
      <seq>tccccgaaaaaccccttttctccatttgcatcccctaaaatttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctgggccaagacttcttattcttgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46979" stop="42792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46679" g_stop="46286" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="510" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="637" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="786" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43146" g_stop="43092" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="841" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E723053" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46679" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCGAAAAACCCCTTTTCTCCATTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCAT</genome_strand>
        <mrna_strand>TCCCCGAAAAACCCCTTTTCTCCATTTGCATCCCCTAAAATTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729974" ref_strand="+" ref_description="SGN-E729974 [LA22CF10]">
      <seq>caaactttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttaaagatgtgaggatccctcctggggccaaacttcttattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46944" stop="42797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46644" g_stop="46286" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="475" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="602" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="751" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43146" g_stop="43097" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="801" r_length="50" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E729974" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46644" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTG</genome_strand>
        <mrna_strand>CAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAAAGATGTGAGGATCCCTCCTGGGGCCAAACTTCTTATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723028" ref_strand="+" ref_description="SGN-E723028 [FC19AE07]">
      <seq>ggcgattggcggccaatcggccgaattgacaaactttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctcttagagatgtgaggatccctcctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46952" stop="42816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46644" g_stop="46286" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="388" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="504" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="631" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="780" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43146" g_stop="43116" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="811" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E723028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46644" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTCTTAGAGATGTGAGGATCCCTCCTGGG</genome_strand>
        <mrna_strand>CAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTCTTAGAGATGTGAGGATCCCTCCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266602" ref_strand="+" ref_description="SGN-E266602 [cLEI-5-A3]">
      <seq>cggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccactttgcctttactcactgatagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46197" stop="42934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45897" g_stop="45812" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="213" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43384" g_stop="43236" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="362" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43146" g_stop="43142" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="367" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E266602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45897" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43236"/>
          <exon e_start="43146" e_stop="43142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGGCAAGATATATGTTGCACCATCTAACTCTGTTTTTGTTATATGTTTTTCTCACAATTAGATCTCATTCCGTTCTCCTCCTGTTTTGCAGTGCTC</genome_strand>
        <mrna_strand>CGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG.........................................................................................TGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728654" ref_strand="+" ref_description="SGN-E728654 [LA18CA12]">
      <seq>ctttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgacagacaccaatttgcctttactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46940" stop="42943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46640" g_stop="46286" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="471" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="598" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43243" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="740" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E728654" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46640" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCA</genome_strand>
        <mrna_strand>CTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCAATTTGCCTTTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722339" ref_strand="+" ref_description="SGN-E722339 [FC16DH08]">
      <seq>gggcgattggcggccaatcggccgaattgcacccaactccccgaaaaaccccttttctccatttgcatacaccaaactttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcaaaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaaagggttgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46989" stop="42966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46684" g_stop="46286" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="431" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="547" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="674" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43266" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="793" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E722339" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46684" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTCCCCGAAAAACCCCTTTTCTCCATTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGAC</genome_strand>
        <mrna_strand>CCAACTCCCCGAAAAACCCCTTTTCTCCATTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAAAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343296" ref_strand="+" ref_description="SGN-E343296 [cTOF-17-P11]">
      <seq>tttgcatacaccaaactttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagccttggcctgcaaaattatgaaaagaatttcaaaaagggttgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46955" stop="42966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46655" g_stop="46286" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="486" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="613" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43266" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="731" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E343296" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46655" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGAC</genome_strand>
        <mrna_strand>TTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTC-AAAAAGGGTTGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731488" ref_strand="+" ref_description="SGN-E731488 [LA27BB09]">
      <seq>cgcccaactccccgaaaaaccccttttctccatttgcatacaccaaactttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcgggcggaagttttctcaaccacctgctgaagatacgcattatgtcagaacgagatcactattgtcaagcctttggcctgcaaaattatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46987" stop="42991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46687" g_stop="46286" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="518" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="645" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43384" g_stop="43291" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="740" r_length="95" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E731488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46687" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
          <exon e_start="43384" e_stop="43291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCAACTCCCCGAAAAACCCCTTTTCTCCATTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAGGTAATATTGAAGTAAAATGGTATACAATGACGCACTCAAGCCCCCCTCCTCCACCCCACCCCCCGAGAGGCAGAAACTTCCATTTCTGGTGAACGGCCAGTTTATTTCTAATAACGTGATGATATGAACGTGTTTACCTATGTATAGAAAATTATTTGCATGCAACCCCTGGTTTGTGTTGTTTTGAGTTCCTTTTGTTTTTCACCTTTTATTTTCTGTTGTAGTTTGGTTCGATCCAGTGCTCTCTATTCTCATACTGTTAAACTTGTCTGTCTGATATTACCTTTTATTTTCTGTTGTAGTTTGGTTAAATCCACTACTCTCTATTCTCATACCATTCAACTTGTCTGTCTAATATTATGTCAATTCCATAGTCACATTGTCTTGTTGTTTGTCATCCGTCTCAAATTTTGACTTGGTTTCTTATTTATTCCAATAATAAACATATTCATTTTGTTTTTTTTCAGAATATTTCTACGTAAATTTATGTGTTAAATTAGGTCTTAGACCTAACTCACACCCCAAGAGTTATCTCAAAGGGAGGAGGATTGTTCAAGCCTTATAAGGAGTCCACCCATGTTATTAACTACCGATGTGGGACTTTTTTGTCATTCTTTAACACCCCACCTCACGCTCAGTTCTTTAACATCCGGTGCGTGGGCAATTTTGATTTTGTACTCCTTTGTCTCATATGACTTTTCCACATTACTAAAAAAATCTGTTTCAAATTACTTGTCAATTTACAAAACCAAGATATAATTAATTTTTTTCCCATTTTGCACTTGAATTATTCCTTTTTGAAAGTATAATATAGTTAAGTTCCAAAAATTTCCTCAACTTTTAGTATTGGTATTGATGGTTAAGGCACATAAATATAGAGTGTATTAAAAAGAGTTGAAGCAAAGAGTTGAAGCATAAATTAGTAAAAGTACCTTTCTTATTTATGATTTCTTAAAGGTCATGTAAAGGGGTAAGTAGACAAGTAATATGGGACAGAGGGAGTACATCAGAACTGAGAACCAAAATTTGTGATTTCAATGTTTTCTTTGAACACAGTGGAATTGGATTCCTAAAATGTGCGATACGAATACGTATTTCTTCTTTTTTGATGATTAAACTGGTCTGTTCAGCAATATCGGAATATTTTCAGTTGTCTCTGTGTTATGTCTCTCCCCCCTCCCGCTTTTAAAGGTAGAGTTATGGGAAGTTAACAGTTGTTTTAAAGGTAGAGTAATATGGAAAGTTAACAGTTGGCGGGTGTATTAAAGTAGAAACTGTTTTTGAATGAGTACTTCAAATAAAAGCTCCAGTTAAACCCGATCAGGCCTAGGGTATTTAAGTCCTCAATAGAGTTTAGGGACCAATCAGACATGTATAACCACTGTGTTACTTTATTGTTGCTTTGATGTCCATCAGCTTTGAAGATTGATTGAGAATTCTGATATGAAGAAACTTTTCAGGACGGAGGATAGGAAAAATACCAGTTATCCTTCCCTGTTGGCACCTAGCTTTTGATTGATGTTGAATAGTGAATTTCCAACATCGATATGTCATGGTCGTTAAAAGCTTCTCTTGTTGTGTTCATGCAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCC-TTGGCCTGCAAAATTATGAAA</genome_strand>
        <mrna_strand>CGCCCAACTCCCCGAAAAACCCCTTTTCTCCATTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTTGGCCTGCAAAATTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321135" ref_strand="+" ref_description="SGN-E321135 [cTOB-13-M14]">
      <seq>gaggcttttctccatttgcataccaccaaactttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgaccagcaactagtggacctacagggggctgctattggtggatttatgggaacccttaccaccaggatgtgtcttcctctatgcctattcctcctgctggtgcctaatctcaatccccaagctatggcctcttttcaaccaagctcaggctctcgcaggaggtcccttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgcagtccagtatggcagctgcctttggttctggagctctgttttcactagttagcggcatgggtggcccaaatccagtacccaatgctttgacatctgggattttctttgcccttgttcaaggtggactgtttgagctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46965" stop="44672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46669" g_stop="46286" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="507" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45100" g_stop="44974" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="634" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E321135" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46669" e_stop="46286"/>
          <exon e_start="45927" e_stop="45812"/>
          <exon e_start="45100" e_stop="44974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTTTCTCCATTTGCATA-CACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGA-CAGCAACTAGTGGA-CTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTA-CA-CAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTG-CTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAA-CAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGGTAAGCCTGTTTTTACTGGATTCCTGATGGACAAAATTTGCCAGTCAGGTTGATAATCAGGCGTATTAACTACGTAAAGCGTCTTAAGTAGTTAGTTGACCATTTCGATCTTTAGTCATTGATTTTGCTCAAGTTCTTGTTTATACTCTTCGAAGTTTCCTACTTGTTTGGGATTGGGACATATTCTTGTCTACACATTTTTGTATCCTCTATAGATTAGACATTCAGAAGCCAATCCACGCCTGCTATAGTTGTATAAATATGATTAAGAACATGGAAACAGCCTTTCACTCTCCAGAAAGAGGACATGCTTTTCAAATTTGGTTCTCACTTAAGTATTACAGTAGCCTTGCTCTTGTTAAAGTTCTTGCATCCATTTCCAATTGCACATTTAGCTTTCCTTCTTGACTAGGTAAAGCAAACCTGGTTTCAATTTATGCCATTCACTGGAACCTACAAAGTTCTTTACTGCAGACACCTCTATGTTTATAACTTCTTCATTTTAAAACACATAGCAGAGTGGATGTCCTCGATTTAACACTTCAATGATAACAAATATATCCCAAATGGACATTCTGTTTTCTTTTTGAACCTTAAACTTTCTTTTTCCTTTTTGATCCACTTCCTTCACCATCCACTCTTTCACAACCTCGTTGAGTTCACATTTGTTGTATCCTGTAGCTGTTGGAGATTAATAATTTCTTTTTGCAGTATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG</genome_strand>
        <mrna_strand>GAGGCTTTTCTCCATTTGCATACCACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACCAGCAACTAGTGGACCTACAGGGGGCTGCTATTGGTGGATTTATGGGAACCCTTACCACCAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACCAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCCTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725669" ref_strand="+" ref_description="SGN-E725669 [LA05AG05]">
      <seq>aaactttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctctttttaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaatagaggcaggaagatgtgcagtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46943" stop="45513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46643" g_stop="46286" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45813" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="471" r_length="113" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E725669" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46643" e_stop="46286"/>
          <exon e_start="45927" e_stop="45813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCA</genome_strand>
        <mrna_strand>AAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTTAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAA-TAGAGGC-AGGAAGATGTGCAGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269553" ref_strand="+" ref_description="SGN-E269553 [cLEM-2-O19]">
      <seq>aaactttcatttcaaacggagagaaaaagggctacctgcggctgaaattttctcaattccaatgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatccccaagctatggcctcttttcaacaagctcaggctctcgcaggaggtccgttggttcaggctcggaattttgctgttatgactggtgttaatgctggcatatcttgtgttttgaaaagaattagaggcaaggaagatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46943" stop="45519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46643" g_stop="46286" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45819" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="467" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E269553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46643" e_stop="46286"/>
          <exon e_start="45927" e_stop="45819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGC</genome_strand>
        <mrna_strand>AAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699463" ref_strand="+" ref_description="SGN-E699463 [FA10AH06]">
      <seq>cgcctttaaaagggctacctgcggctgaaattttctcaattccaactgggtgaaggaaagcaaggagctatggtggttgaaatgccaaatagcagcaatcagaatccaatagttcagttgcagaacaagtttaaggaattggaaatcggcttcaaagggtggttatcgaagcagtcaattccagttgaagctgctgtggtgacagcaactagtggactacagggggctgctattggtggatttatgggaacgcttacacaggatgtgtcttcctctatgcctattcctcctgctggtgctaatctcaatctccaagctatggcctcttttcaacaagctcaggctctcgcatgaggtccgttggtccaggctcggaattttgctgttatgactggtgttaatgctggcatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46919" stop="45556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46626" g_stop="46286" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45927" g_stop="45856" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="414" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E699463" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46626" e_stop="46286"/>
          <exon e_start="45927" e_stop="45856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAA-TGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGTACTTTTCTTATTAGTACTATAGTTTTGTTTATTCTAAAGCATTGCTCAAAGTTATTGTTGAGAGTCATTCTCTATTTTCGTATCAGTAGGTTTTTTTCCCTAGAATTTAGGAGCTTATCATATGCTTATTTATTGTGTTTTTCCCGGATTTTCTATCGTTCTCTGTAGTCATGTATATAATCTCTGAACTATCAGGACAGATCATAAAGCTTAAATCTTTTTTATCTATTTCTTTTGTCTTTTAAAATGCATGTTGTTAGTCAACGTTTAGTACTTCAAGGTGGAATATTTAAGATTTGACAAGGCTAACTTATGAATTATGATGGATAAGCAACGTAATTGAAATTTTGGTTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCT</genome_strand>
        <mrna_strand>CGCCTTTAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAACTGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCTCCAAGCTATGGCCTCTTTTCAACAAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................GCTCTCGCATGAGGTCCGTTGGTCCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299602" ref_strand="+" ref_description="SGN-E299602 [cLEW-20-O17]">
      <seq>acccctgctcacaagccttttcccatgttaaaatctgaaatcaagatggagggaaaataatttccagtatctggcctttaacgatatacatatattacatcatattttcactttaactactcacactttttttttctctctcacaggcaagggttttagtatccactgaaattattctctcaaaacttagaaaatggctgattctagagaagaatctccagattggctccgcagttttcaggtataactgttttgatttcatcggaattttcataaatttgctcgctatgcacttttcaaagtcgattttatgcactgaatctatgtttaattagttgagcaatcatttgattgagttttaaccgattttgaacatcagtttgattggtctttcagctgcgagattcaaactttgatcaattcaattttttgttcacagtgcttcgtggcggaagtagattcaagtacatgtatatagttttagagcacatttgggttagggtatgctaatttggggcaattagttttgttgaaatcattgtttactgtgtatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="50204" stop="51358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50504" g_stop="51058" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E299602" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50504" e_stop="51058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAA-ATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTAGTTTTGTTGAAATCATTGTTTACTGTGTATCAC</genome_strand>
        <mrna_strand>ACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAAGATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAAGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTAGTTTTGTTGAAATCATTGTTTACTGTGTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340301" ref_strand="+" ref_description="SGN-E340301 [cTOF-2-M13]">
      <seq>taaaatctgaaatcaaatggagggaaaataatttccagtatctggcctttaacgatatacatatattacatcatattttcactttaactactcacactttttttttctctctcacaggcaagggttttagtatccactgaaattattctctcaaaacttagaaaatggctgattctagagaagaatctccagattggctccgcagttttcaggcacctgctgcgataatcttgtcatccggatctgaatctcctgtaaataacaaccacctaagtgatgatgaggatagcatcaatctgagtaagctgtttcagaaggataaaacatcactttcagaggaaaaatgtagtcaggatggacatggatctcaactcaagaagacgtccgaagtaaattctccgattaaaaatgaagaagtagatcgcacacctactaggaagagaaagaatgaaaaccagagtgaaaaaaaaggaaaaggcactgacaaggctttaacgaagagaagagcattggagaagccttttacagataaagaacccagtcattcagtctgtacgttgtcatcggattctgagtctcctcatgatggcagttccatgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="50232" stop="54998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50532" g_stop="50743" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50744" i_stop="51774" i_length="1031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51775" g_stop="52033" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="471" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52034" i_stop="52134" i_length="101">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52135" g_stop="52196" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="533" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52197" i_stop="54627" i_length="2431">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54628" g_stop="54698" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="604" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E340301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50532" e_stop="50743"/>
          <exon e_start="51775" e_stop="52033"/>
          <exon e_start="52135" e_stop="52196"/>
          <exon e_start="54628" e_stop="54698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTAGTTTTGTTGAAATCATTGTTTACTGTGTATCACTTCAAGCCGAAAACAGTGGGTGGGGACTTGGAAAAATACTAGTAATGAAAATCCCTTTTTTGTGTAAATTTTTTTGAACCCTACCTTTTCTATTATTCACCTAGATAAGTTTGGATAGTTGTTGCATATAGTTACCTATTGTATTGTTTGTTTTAATGAATACAATGCTTAGATATATTGCATTATTTTCTGTCATACATAATGCCACACATCAACAATTTGAAGGACAATTCTTCATGAAAAGGTACTGGGTAGAGCTATTACAGAAAGGTAGGGTAAGGGATAAAATAAGATTATTAGATAATAAGCAAAGAAAAAATAAGGTAAAAATGCGATCATACCAAATTGGTCGTTATACAACTGAAACTTTTCGTCTTTACCTTCTGATGAATTCAACAATATGATATGTAGAATTTAAATAATCAAAACAAATATTGTATTTAAACTAACAACACAATGCAATGCTAGCAACAACCATCCAAACAAGCTGTAAATGGAAAAATTTAGATGTATAGTATAACCATTCACTATAACTTAATTGCATCCCCTTATGCTTCTTAAAGGCATTATTCAAGTATAAGTTCTGCTGTTTTTATATAAATTCGTTCTCCACACACTTTTGTTGAAAGACTGGGCATTGTTTAGTTATTATTTGTTCTGTTGTTGTTCCATGTTCCTATAACGACCAAGACAATCTGATGTTAAAACAAATGCAGGCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAGGTATTAGCTAATCCATTTTACCGAATGAATCAACTGCATCAGATTGTAAGTGTGGAGTTAAAGAAGGGCCCAGTAAAGATCTTCTCTTTCCAATGATACAGGAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAAGTAAGGAGTTCCCTACTATCTGTATTTATTTTTTAATGTACTGAACTATCATCAGTAAATTAATTTAGTAGTCAAAGTATGTCAAAGAAGCGACTAGATCGTTCAACTTGTACGGTACCAGTTGACCCTATGTTTTTGCTCATATGCAGCTTCAATGAGACCCTTGATCTTTGGTTTTATATTTATTTTGCCCCTATCTCTAGCGAGCTCTATACCAATCATACTTTGGAGATGTCGCAGTCAATGATTGCTCCATCGATAATCTTCAGTGAGTTGTGAATTTTGTTCAATGAAGCAATACCAAATATGCCCCTAGAAAGATCAGACCTACGCCACGAGCTGATGACAACCATGCACCACCTATATCCCTGTTCTCCAAGGCACTCCTATTTTTCAAGAGGGTTTGCAGCAATCAAGCACAAGAAAATAGTGACTTCATAAGCTGATCAGTCAACTATTTCGTCATGTTTTTTTAAATGAAGAGTAAATAGTGACTTAGGCTGGTGCGTTTCTACTTCAGAAGTCATCCATATTGTGAGGAGATTGGTGGAGAAATATAGGAAAAGGAAGAGGGACTTAAATATGGTGTTCATTGACCTTGAAGAAGCCTAAGATAGTCCTGAGGGAAGTCCTCTAGAGATTCTAGATGCTTGGAGAGTAGAGATGTGTTGGTGACTTGCATTAGGGCATTGAAGGACATGTATGATGGATCCCAGATTTGGGTTAAAATGGTGGGAGGAGACTCAACAATTTCCGGTTCAGATGGGGTAGCACCATGGATCAATACTTAGCCTATTCCTATTTTCCTTGGTGATGGATGAATTGACATGATATATTCAAGATGATGTGCTATGGTATATGTTATTGCGGATGATCTTATATTGTTTGATGAGACATGCAATAGAATCAATGCTTGGTTGGAGTTGTGAAGTCAAACTCTAGAGTTCTCTAAACTTAAGGTAAGTTTTATAGTGTGGTGGTTAGAACGACTTTGTTGTGTAGGGCTGAATGTTGGTCAGTCAAGACCCCCCATGTTCAAAAGATGCTAATTGCGGAAATGACAATGTTGAGATAGATGTGTGAGCATATTAAGAGCAATAAAATTTGGAATGAGGATATCCAAGTCAATGTGGGAGTGACCTTTGTGGTGAACAAGATGAGAGTAGCTAGATGAGATGGTTTAAGCATGTGGAGAGGAGATGCGCAAATACCCAGTGAGGAGGCATGAGAGGTTGGATATAGTTGGTATGAGAAGAGGTAGAGGTAGGCCTAAAATGTATAGGGAAAAAAGTGAGTTTGACATGCAATTATGCAATTTTAGTTTACTGTGGACATGAACTTAGATAGGAGGGTGGAAGTCGTGGATTAAGGTAAAAGGTTAGTAGGTAGTGGAGTGTTGTCTTGCTTTTCAATGGGTTTAGGCTTGATGGTGTATGTCGTAGTATTAGCCTTATTCTTGTAGTGTCTTGCTGTTAATTTCTATCCTCATATGTTGTTTATGGTGTTTTGGTTATTCCAATTTTGTTGTTTCTAACTGCTTACTTATTAGGTATGTTTTTCTCACGGTTGTTTTCCCTTTTCATACCTACTTTGATTTGTTGTACTCAACAGAGGGTCCTCCATAAACAGCCTCTCTAGCTCCACGAGGTAGGAGTAATCAGACCCCACTTTCACTTGGTATGATGTTAAAGAGTAAATGGATAAAAGAGCCTAGACATATTAGTACTATTATAGCTTTCTGATAGAATAGTTTTTCTTCTAAATAGTTTCTTATAAGCATTCACTGTGGAAAATGTCTGTGAAATTGCCTTGAACAGTGAAACTGCACTTCTAACTTACCGTAATCAGTTTCTTGATAGTATTTCTCCTCTTATGAAGCAAAAGATGTCCACTAGCTAGCAGTTTAGTTTGGCTGGAAATAATGTTCTAGGCTTCAGGAACAGCCAAGGTAGTTAAAACCTCTTGGTATACTAGAATGATGCAATTGCTTAACGTGGTAATTTATTATATACTGAAATGGCTACTTTACCTAGAATCTGTTCTTCGACAATTTATTTCATACTTCAATTAACTCGTCCAAAATCAATCAGATTAAAACATTTTGACACATCTCTCCTTACCCAATGTAATCTGTTAGATTCATACAAACACTTTTCTCATTCTAGGTATCAGTAATGGTAATCCCACATGTTATCATTAGTTTTGGCAATTGCTACAGGTGGTGATTTTACTTTGGCCATTCTTGAAATTATCACAATATGGTGTAGGCATCTCGTTTTCTCCTTTGATCAGTTGCCTGGAGTTCACAGACATGTAGGCTTAATCCTTAGAGTCTGTGGATCTCCCATACACTTCATTGTTAACTACTATGCAAGTATTGTTGACTATAGTCATCTTAGTTTGATCTCAATCATATATTTGGTTCATACAGGAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGT</genome_strand>
        <mrna_strand>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAG.....................................................................................................GAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299551" ref_strand="+" ref_description="SGN-E299551 [cLEW-20-E24]">
      <seq>gagaacctagtctcagttttttttttctctcacaggcaagggttttagtatccactgaaattattctctcaaaacttagaaaatggctgattctagagaagaatctccagattggctccgcagttttcaggcacctgctgcgataatcttgtcatccggatctgaatctcctgtaaataacaaccacctaagtgatgatgaggatagcatcaatctgagtaagctgtttcagaaggataaaacatcactttcagaggaaaaatgtagtcaggatggacatggatctcaactcaagaagacgtccgaagtaaattctccgattaaaaatgaagaagtagatcgcacacctactaggaagagaaagaatgaaaaccagagtgaaaaaaaaggaaaaggcactgacaaggctttaacgaagagaagagcattggagaagccttttacagataaagaacccagtcattcagtctgtacgttgtcatcggattctgagtctcctcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="50317" stop="54981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50613" g_stop="50743" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50744" i_stop="51774" i_length="1031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51775" g_stop="52033" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="389" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52034" i_stop="52134" i_length="101">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52135" g_stop="52196" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="451" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52197" i_stop="54627" i_length="2431">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54628" g_stop="54681" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="505" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E299551" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50613" e_stop="50743"/>
          <exon e_start="51775" e_stop="52033"/>
          <exon e_start="52135" e_stop="52196"/>
          <exon e_start="54628" e_stop="54681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTAGTTTTGTTGAAATCATTGTTTACTGTGTATCACTTCAAGCCGAAAACAGTGGGTGGGGACTTGGAAAAATACTAGTAATGAAAATCCCTTTTTTGTGTAAATTTTTTTGAACCCTACCTTTTCTATTATTCACCTAGATAAGTTTGGATAGTTGTTGCATATAGTTACCTATTGTATTGTTTGTTTTAATGAATACAATGCTTAGATATATTGCATTATTTTCTGTCATACATAATGCCACACATCAACAATTTGAAGGACAATTCTTCATGAAAAGGTACTGGGTAGAGCTATTACAGAAAGGTAGGGTAAGGGATAAAATAAGATTATTAGATAATAAGCAAAGAAAAAATAAGGTAAAAATGCGATCATACCAAATTGGTCGTTATACAACTGAAACTTTTCGTCTTTACCTTCTGATGAATTCAACAATATGATATGTAGAATTTAAATAATCAAAACAAATATTGTATTTAAACTAACAACACAATGCAATGCTAGCAACAACCATCCAAACAAGCTGTAAATGGAAAAATTTAGATGTATAGTATAACCATTCACTATAACTTAATTGCATCCCCTTATGCTTCTTAAAGGCATTATTCAAGTATAAGTTCTGCTGTTTTTATATAAATTCGTTCTCCACACACTTTTGTTGAAAGACTGGGCATTGTTTAGTTATTATTTGTTCTGTTGTTGTTCCATGTTCCTATAACGACCAAGACAATCTGATGTTAAAACAAATGCAGGCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAGGTATTAGCTAATCCATTTTACCGAATGAATCAACTGCATCAGATTGTAAGTGTGGAGTTAAAGAAGGGCCCAGTAAAGATCTTCTCTTTCCAATGATACAGGAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAAGTAAGGAGTTCCCTACTATCTGTATTTATTTTTTAATGTACTGAACTATCATCAGTAAATTAATTTAGTAGTCAAAGTATGTCAAAGAAGCGACTAGATCGTTCAACTTGTACGGTACCAGTTGACCCTATGTTTTTGCTCATATGCAGCTTCAATGAGACCCTTGATCTTTGGTTTTATATTTATTTTGCCCCTATCTCTAGCGAGCTCTATACCAATCATACTTTGGAGATGTCGCAGTCAATGATTGCTCCATCGATAATCTTCAGTGAGTTGTGAATTTTGTTCAATGAAGCAATACCAAATATGCCCCTAGAAAGATCAGACCTACGCCACGAGCTGATGACAACCATGCACCACCTATATCCCTGTTCTCCAAGGCACTCCTATTTTTCAAGAGGGTTTGCAGCAATCAAGCACAAGAAAATAGTGACTTCATAAGCTGATCAGTCAACTATTTCGTCATGTTTTTTTAAATGAAGAGTAAATAGTGACTTAGGCTGGTGCGTTTCTACTTCAGAAGTCATCCATATTGTGAGGAGATTGGTGGAGAAATATAGGAAAAGGAAGAGGGACTTAAATATGGTGTTCATTGACCTTGAAGAAGCCTAAGATAGTCCTGAGGGAAGTCCTCTAGAGATTCTAGATGCTTGGAGAGTAGAGATGTGTTGGTGACTTGCATTAGGGCATTGAAGGACATGTATGATGGATCCCAGATTTGGGTTAAAATGGTGGGAGGAGACTCAACAATTTCCGGTTCAGATGGGGTAGCACCATGGATCAATACTTAGCCTATTCCTATTTTCCTTGGTGATGGATGAATTGACATGATATATTCAAGATGATGTGCTATGGTATATGTTATTGCGGATGATCTTATATTGTTTGATGAGACATGCAATAGAATCAATGCTTGGTTGGAGTTGTGAAGTCAAACTCTAGAGTTCTCTAAACTTAAGGTAAGTTTTATAGTGTGGTGGTTAGAACGACTTTGTTGTGTAGGGCTGAATGTTGGTCAGTCAAGACCCCCCATGTTCAAAAGATGCTAATTGCGGAAATGACAATGTTGAGATAGATGTGTGAGCATATTAAGAGCAATAAAATTTGGAATGAGGATATCCAAGTCAATGTGGGAGTGACCTTTGTGGTGAACAAGATGAGAGTAGCTAGATGAGATGGTTTAAGCATGTGGAGAGGAGATGCGCAAATACCCAGTGAGGAGGCATGAGAGGTTGGATATAGTTGGTATGAGAAGAGGTAGAGGTAGGCCTAAAATGTATAGGGAAAAAAGTGAGTTTGACATGCAATTATGCAATTTTAGTTTACTGTGGACATGAACTTAGATAGGAGGGTGGAAGTCGTGGATTAAGGTAAAAGGTTAGTAGGTAGTGGAGTGTTGTCTTGCTTTTCAATGGGTTTAGGCTTGATGGTGTATGTCGTAGTATTAGCCTTATTCTTGTAGTGTCTTGCTGTTAATTTCTATCCTCATATGTTGTTTATGGTGTTTTGGTTATTCCAATTTTGTTGTTTCTAACTGCTTACTTATTAGGTATGTTTTTCTCACGGTTGTTTTCCCTTTTCATACCTACTTTGATTTGTTGTACTCAACAGAGGGTCCTCCATAAACAGCCTCTCTAGCTCCACGAGGTAGGAGTAATCAGACCCCACTTTCACTTGGTATGATGTTAAAGAGTAAATGGATAAAAGAGCCTAGACATATTAGTACTATTATAGCTTTCTGATAGAATAGTTTTTCTTCTAAATAGTTTCTTATAAGCATTCACTGTGGAAAATGTCTGTGAAATTGCCTTGAACAGTGAAACTGCACTTCTAACTTACCGTAATCAGTTTCTTGATAGTATTTCTCCTCTTATGAAGCAAAAGATGTCCACTAGCTAGCAGTTTAGTTTGGCTGGAAATAATGTTCTAGGCTTCAGGAACAGCCAAGGTAGTTAAAACCTCTTGGTATACTAGAATGATGCAATTGCTTAACGTGGTAATTTATTATATACTGAAATGGCTACTTTACCTAGAATCTGTTCTTCGACAATTTATTTCATACTTCAATTAACTCGTCCAAAATCAATCAGATTAAAACATTTTGACACATCTCTCCTTACCCAATGTAATCTGTTAGATTCATACAAACACTTTTCTCATTCTAGGTATCAGTAATGGTAATCCCACATGTTATCATTAGTTTTGGCAATTGCTACAGGTGGTGATTTTACTTTGGCCATTCTTGAAATTATCACAATATGGTGTAGGCATCTCGTTTTCTCCTTTGATCAGTTGCCTGGAGTTCACAGACATGTAGGCTTAATCCTTAGAGTCTGTGGATCTCCCATACACTTCATTGTTAACTACTATGCAAGTATTGTTGACTATAGTCATCTTAGTTTGATCTCAATCATATATTTGGTTCATACAGGAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGAT</genome_strand>
        <mrna_strand>GAGAACCTAGTCTCAGTTTTTTTTT-TCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAG.....................................................................................................GAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374358" ref_strand="+" ref_description="SGN-E374358 [TUS-33-F12](-)">
      <seq>tgagaatgttgatcatcagaccaatgggaatgtcaaagcaaaagctaagaaagcctcggctatggaacaaaagaagggcaagaagggagcaaagataccaaagaaagtaaaaaagaaacctcaagtgcagaagaaaagcaagagcaaaaaataagatatgactctacatatttcatttcgtttgatatgtattctatttattttcttttcttattttctttctttttcttctgttctttgtatacatatactgatcatattttttaaaagctaatgaaagtagtctttaggaagctatataattggtagaggccacataatatgtattatttgcaagattttctcatgattatcctccatattaccataaaaattctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="57257" stop="58316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57557" g_stop="57614" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57615" i_stop="57695" i_length="81">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57696" g_stop="58023" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="386" r_length="328" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E374358" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57557" e_stop="57614"/>
          <exon e_start="57696" e_stop="58023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCGGTATGCTCTGTTCTTTTTGGTTACCACTAACAGTTGCTTCACTTTCTAGATCTCAAATTGTGATCCAAGCTCGCTTTGCAGGCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCTAATGTCGAT</genome_strand>
        <mrna_strand>TGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCG.................................................................................GCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300472" ref_strand="+" ref_description="SGN-E300472 [cLET-45-N15]">
      <seq>gagaatgttgatcatcagaccaatgggaatgtcaaagcaaaagctaagaaagcctcggctatggaacaaaagaagggcaagaagggagcaaagataccaaagaaagtaaaaaagaaacctcaagtgcagaagaaaagcaagagcaaaaaataagatatgactctacatatttcattccgttggatatgaatactatcaattccctttcctaattttctttctttttcttcggttctgggtatacatatactgatcatattttttaaaagctaatgaaagtagtctttaggaagctatataattggtagaggccacataatatgtattatttgcaagattttctcatgattatcctccatattaccataaaaattctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="57258" stop="58316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57558" g_stop="57614" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57615" i_stop="57695" i_length="81">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57696" g_stop="58024" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="386" r_length="329" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E300472" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57558" e_stop="57614"/>
          <exon e_start="57696" e_stop="58024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCGGTATGCTCTGTTCTTTTTGGTTACCACTAACAGTTGCTTCACTTTCTAGATCTCAAATTGTGATCCAAGCTCGCTTTGCAGGCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCTAATGTCGATG</genome_strand>
        <mrna_strand>GAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCG.................................................................................GCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTCCGTTGGATATGAATACTATCAATTCCCTTTCCTAATTTTCTTTCTTTTTCTTCGGTTCTGGGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374359" ref_strand="+" ref_description="SGN-E374359 [TUS-33-F12]">
      <seq>gagaatgttgatcatcagaccaatgggaatgtcaaagcaaaagctaagaaagcctcggctatggaacaaaagaagggcaagaagggagcaaagataccaaagaaagtaaaaaagaaacctcaagtgcagaagaaaagcaagagcaaaaaataagatatgactctacatatttcatttcgtttgatatgtattctatttattttcttttcttattttctttctttttcttctgttctttgtatacatatactgatcatattttttaaaagctaatgaaagtagtctttaggaagctatataattggtagaggccacataatatgtattatttgcaagattttctcatgattatcctccatattaccataaaaattctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="57258" stop="58316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57558" g_stop="57614" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57615" i_stop="57695" i_length="81">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57696" g_stop="58024" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="386" r_length="329" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E374359" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57558" e_stop="57614"/>
          <exon e_start="57696" e_stop="58024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCGGTATGCTCTGTTCTTTTTGGTTACCACTAACAGTTGCTTCACTTTCTAGATCTCAAATTGTGATCCAAGCTCGCTTTGCAGGCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCTAATGTCGATG</genome_strand>
        <mrna_strand>GAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCG.................................................................................GCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365916" ref_strand="+" ref_description="SGN-E365916 [cLPT-11-J19]">
      <seq>gaaaaagtctcatagagagaaagtgagtgacaagtgagagaaggagaagggaagagcttgttaggtgttcttcatttcgggttcatcagcatccggggcaaggcgagtggggtgtggatatcttctcgaactcaagttttttgattaactgaacaatggaggtacttggaaaatctatggtagcagtgcctacaaatgttatatatctgtcaactattcttggccaagatggcccaaaccctgttcacaagtgtgattggaaatgtgaaaatgaacatgtgtgtgggaacatgttccgctgccgactaactgggctgacacacatttgcgacaaaaattgtaaccagcgaatattgtatgataaccataactctctttgcagagttagccaacagattttccctttaacacaagttgaagtgcaggctgtgaaaggtgtacggaggaagtttgatgctgatagttccccttctgatagctgcgcctttaagcgcagaacggatgcacatttccacccatcaccatttgagagatctttcactgctgttagtcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65942" stop="63654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65642" g_stop="65557" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65556" i_stop="64424" i_length="1133">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.674" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64423" g_stop="63954" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="556" r_length="469" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E365916" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65642" e_stop="65557"/>
          <exon e_start="64423" e_stop="63954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTCTTAGAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAA-GAAAAAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATCGTAAGTTTCTTCTTCTTTTTTTTCATGATCTTTTTGTTGTTTATTGTTTGATTTTGCCTGAGAATTAGTTAGTTGTGATTTTCATCATTTTTTTTTGGGATAATTCTGTTGTAGTTCTTCAGATTTGGTTGTAATGCTAACGTAAATGGTTGTGTGAGAGGAAATTCTATATGCTTGAGCTGAAATTGGAACTTTTTACTGTTCATTTTGCCCTTGTTTAGTCAGTTTTGTACAGGATCTTTTGTTTTGGGGTCGAAATTTTTTTAGGTTGAAAAGAAGGAATTCACCTAACCTAATAAAGAAATTCTTTTATGAAATACTTGTAAACAAAAAAAATTTCACGTATACAAAACAACAATGTAATTAGATTTGCTCTAGATGTGTAAATCAACAGAGCTAAGATTTGTTGCCAGTTAATTGTTAGTTTTCTGGTGAACCACTCTAGCTTGTGGTGGGGGTAGGAACAGAGTTGGCAATTGGGTAGGTTGGCTCAAATTTGGGCGGGTCAAAATGGGCCATAATACTAAACGGGTCTAGACCCAATTTAATTTTAGGTTGAATTAAATTTGGATGGGTCAAAACTCAATCCAATCTTGGGTTGGGCCAACATAACAAACGGGTCTATACCTTGGGCTGGGTCAAAACGGGTCAAGTAATGAGTCATAATCCATGCTTAAATTTTTACTGAAGTGTTAATTGTTTTTCTGAAATTTTTAATACATAATAATTTGCATATTTTTATTATGGCTATACGTAATATATCAAAATAAAAATAAAGTCCCTTGAAAATATCTTGACAAGATTTTTCATTAGTCAATTTAGGCTACATATGAATTCAATTTTGAATGAGTTGAGTTGAAATGGATTAAGCTAATAGATGTACGGGTTATTTTAAGTGGGTTGGGCGGGTTAGGCTTAATTATGCCACCCTTGTTTTGAGTCTCCACTAGCAATTGCTCGAGTATAAGGTTTTATATTTTATGTTCTTTACTGAGGTTTGCTTAGTCACCTAAATGTTGCTTTTCAGTTTCCATAGGAAAATTTTATTAGATGGTTTTTGTCCTTCGAAACAAACAATTATATTCCATGATCCACCCACCAATCTTGACGGATCTTGTTTATCAAGTCTGCAGAGCATCCGGGGCAAGGCGAGTGGGGTGTGGATATCTTCTCAGAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTGGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGTCTAACTGGGCTGACACACATTTGCGACAAAAACTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCGACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAAGGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</genome_strand>
        <mrna_strand>GAAAAAGTCTCATAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAAGGGAAGAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCGGGGCAAGGCGAGTGGGGTGTGGATATCTTCTC-GAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTTGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGACTAACTGGGCTGACACACATTTGCGACAAAAATTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCAACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAACGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363921" ref_strand="+" ref_description="SGN-E363921 [cLPT-10-N22]">
      <seq>aagggaagagcttgttaggtgttcttcatttcgggttcatcagcatccggagcaaggcgagtggggtgtggatatcttctcgaactcaagttttttgattaactgaacaatggaggtacttggaaaatctatggtagcagtgcctacaaatgttatatatctgtcaactattcttggccaagatggcccaaaccctgttcacaagtgtgattggaaatgtgaaaatgaacatgtgtgtgggaacatgttccgctgccgtctaactgggctgacacacatttgcgacaaaaattgtaaccagcgaatattgtatgataaccataactctctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65896" stop="63831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65597" g_stop="65557" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65556" i_stop="64424" i_length="1133">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.674" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64423" g_stop="64131" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="333" r_length="292" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E363921" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65597" e_stop="65557"/>
          <exon e_start="64423" e_stop="64131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAAAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATCGTAAGTTTCTTCTTCTTTTTTTTCATGATCTTTTTGTTGTTTATTGTTTGATTTTGCCTGAGAATTAGTTAGTTGTGATTTTCATCATTTTTTTTTGGGATAATTCTGTTGTAGTTCTTCAGATTTGGTTGTAATGCTAACGTAAATGGTTGTGTGAGAGGAAATTCTATATGCTTGAGCTGAAATTGGAACTTTTTACTGTTCATTTTGCCCTTGTTTAGTCAGTTTTGTACAGGATCTTTTGTTTTGGGGTCGAAATTTTTTTAGGTTGAAAAGAAGGAATTCACCTAACCTAATAAAGAAATTCTTTTATGAAATACTTGTAAACAAAAAAAATTTCACGTATACAAAACAACAATGTAATTAGATTTGCTCTAGATGTGTAAATCAACAGAGCTAAGATTTGTTGCCAGTTAATTGTTAGTTTTCTGGTGAACCACTCTAGCTTGTGGTGGGGGTAGGAACAGAGTTGGCAATTGGGTAGGTTGGCTCAAATTTGGGCGGGTCAAAATGGGCCATAATACTAAACGGGTCTAGACCCAATTTAATTTTAGGTTGAATTAAATTTGGATGGGTCAAAACTCAATCCAATCTTGGGTTGGGCCAACATAACAAACGGGTCTATACCTTGGGCTGGGTCAAAACGGGTCAAGTAATGAGTCATAATCCATGCTTAAATTTTTACTGAAGTGTTAATTGTTTTTCTGAAATTTTTAATACATAATAATTTGCATATTTTTATTATGGCTATACGTAATATATCAAAATAAAAATAAAGTCCCTTGAAAATATCTTGACAAGATTTTTCATTAGTCAATTTAGGCTACATATGAATTCAATTTTGAATGAGTTGAGTTGAAATGGATTAAGCTAATAGATGTACGGGTTATTTTAAGTGGGTTGGGCGGGTTAGGCTTAATTATGCCACCCTTGTTTTGAGTCTCCACTAGCAATTGCTCGAGTATAAGGTTTTATATTTTATGTTCTTTACTGAGGTTTGCTTAGTCACCTAAATGTTGCTTTTCAGTTTCCATAGGAAAATTTTATTAGATGGTTTTTGTCCTTCGAAACAAACAATTATATTCCATGATCCACCCACCAATCTTGACGGATCTTGTTTATCAAGTCTGCAGAGCATCCGGGGCAAGGCGAGTGGGGTGTGGATATCTTCTCAGAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTGGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGTCTAACTGGGCTGACACACATTTGCGACAAAAACTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTG</genome_strand>
        <mrna_strand>AAGGGAAGAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCGGAGCAAGGCGAGTGGGGTGTGGATATCTTCTC-GAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTTGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGTCTAACTGGGCTGACACACATTTGCGACAAAAATTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="67580" stop="68603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67880" g_stop="68303" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67880" e_stop="68303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTTGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAACAAAATCACCAATTTCGCAGCTACTATTCACGACAGCAAAACTGAAGATGCAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAGGATAATATGCTGTCCAAAAATCAGCTCAATCGGATAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTATGGCT-GAAATTTGACTGCGAAAATCTGCTCTTTTTCTCTCTTTTTGGCTACTAAAAAACTCTCTCTAAAAAAT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTC-TTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729991" ref_strand="+" ref_description="SGN-E729991 [LA22CH04]">
      <seq>tactccagtacatccaggttgcctctttcagccaagaggaggaaacttcccaatgttggtgactcagtccacgttccttcgcttaacaagcaagctttagtcctgaaagtcgatccttctagagaagagcttttggtacaagctggtaacatgaagcttaagcttaaattaacagatgtattgacctgaaaggtgcctgcgccaggtaggtttttcattatctccgtcctgcagtgagaaggtgcccttgggaatctgggacgcatttgaaaccgcctctcgccacctgcaattggtatgacgggacagttaaacttgctaaacatgaagtaagaatggtcgttggtatatttccttactatcacgttttataataaattagtgcaatgagctcgggatatatcgtatagcctgagcatatatccagttacccgggatgcatctcatgctatttgactaggtactctcacaactgacatctagcttgcccataaggaattgtactcagttttaagctacaccgctttcacgatgttatgggtttttttaaaaggatgcctcgaagagaaggttccatcagaaaatatgcacaatgttgaccagctagctataattttcagtgaagtgcatggggtcatatgcaagggagtgtatcagtccaaacatgagacctctttgtcctgcgggctatactaaaattatgggaaacttttgattgccctcgttcaggtacacttgtatttatttgagcttgctggatttgattaaagtcaactactagattctggatgacatcagtttatttgaacctaggtgatgccttgattggagtgtacttattaaatagcttcgttgtgtacaaaacgtacagattttatacttctaaatgaaattcagatctagcttattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80539" stop="78874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80239" g_stop="80209" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80208" i_stop="80059" i_length="150">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80058" g_stop="79179" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="910" r_length="879" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="911" polyA_stop="925"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E729991" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80239" e_stop="80209"/>
          <exon e_start="80058" e_stop="79179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCCAGTACATCCAGGTTGCCTCTTTCAGGTAACATAATTTCTTTCTTCTTTCTTTTATGTGATGATCATTATTGCTTGTCAACGGACAATGGTTTGCTACCATCTATTATATTTTCTTGTTTTACATGAATCAAAATATCCACTATTGGTTGCAATGATCTGTTTTGCCTATATACAGCCAAGAGGAGGAAACTTCCCAATGTTGGTGACTCAGTCCACGTTCCTTCGCTTAACAAGCAAGCTTTAGTCCTGAAAGTCGATCCTTCTAGAGAAGAGCTTTTGGTACAAGCTGGTAACATGAAGCTTAAGCTTAAATTAACAGATGTATTGACCTGAAAGGTGCCTGCGCCAGGTAGGTTTTTCATTATCTCCGTCCTGCAGTGAGAAGGTGCCCTTGGGAATCTGGGACGCATTTGAAACCGCCTCTCGCCACCTGCAATTGGTATGACGGGACAGTTAAACTTGCTAAACATGAAGTAAGAATGGTCGTTGGTATATTTCCTTACTATCACGTTTTATAATAAATTAGTGCAATGAGCTCGGGATATATCGTATAGCCTGAGCATATATCCAGTTACCCGGGATGCATCTCATGCTATTTGACTAGGTACTCTCACAACTGACATCTAGCTTGCCCATAAGGAATTGTACTCAGTTTTAAGCTACACCGCTTTCACGATGTTATGGGTTTTTTTAAAAGGATGCCTCGAAGAGAAGGTTCCATCAGAAAATATGCACAATGTTGACCAGCTAGCTATAATTTTCAGTGAAGTGCATGGGGTCATATGCAAGGGAGTGTATCAGTCCAAACATGAGACCTCTTTGTCCTGCGGGCTATACTAAAATTATGGGAAACTTTTGATTGCCCTCGTTCAGGTACACTTGTATTTATTTGAGCTTGCTGGATTTGATTAAAGTCAACTACTAGATTCTGGATGACATCAGTTTATTTGAA-CTAGGTTGATGCCTTGATTGGAGTGTACTTATTAAATAGCTTCGTTGTGTACAAAAACGTACAGATTTTATACTTCTAAATGAAATTCAGATCTAGCTAATTA</genome_strand>
        <mrna_strand>TACTCCAGTACATCCAGGTTGCCTCTTTCAG......................................................................................................................................................CCAAGAGGAGGAAACTTCCCAATGTTGGTGACTCAGTCCACGTTCCTTCGCTTAACAAGCAAGCTTTAGTCCTGAAAGTCGATCCTTCTAGAGAAGAGCTTTTGGTACAAGCTGGTAACATGAAGCTTAAGCTTAAATTAACAGATGTATTGACCTGAAAGGTGCCTGCGCCAGGTAGGTTTTTCATTATCTCCGTCCTGCAGTGAGAAGGTGCCCTTGGGAATCTGGGACGCATTTGAAACCGCCTCTCGCCACCTGCAATTGGTATGACGGGACAGTTAAACTTGCTAAACATGAAGTAAGAATGGTCGTTGGTATATTTCCTTACTATCACGTTTTATAATAAATTAGTGCAATGAGCTCGGGATATATCGTATAGCCTGAGCATATATCCAGTTACCCGGGATGCATCTCATGCTATTTGACTAGGTACTCTCACAACTGACATCTAGCTTGCCCATAAGGAATTGTACTCAGTTTTAAGCTACACCGCTTTCACGATGTTATGGGTTTTTTTAAAAGGATGCCTCGAAGAGAAGGTTCCATCAGAAAATATGCACAATGTTGACCAGCTAGCTATAATTTTCAGTGAAGTGCATGGGGTCATATGCAAGGGAGTGTATCAGTCCAAACATGAGACCTCTTTGTCCTGCGGGCTATACTAAAATTATGGGAAACTTTTGATTGCCCTCGTTCAGGTACACTTGTATTTATTTGAGCTTGCTGGATTTGATTAAAGTCAACTACTAGATTCTGGATGACATCAGTTTATTTGAACCTAGG-TGATGCCTTGATTGGAGTGTACTTATTAAATAGCTTCGTTGTGTAC-AAAACGTACAGATTTTATACTTCTAAATGAAATTCAGATCTAGCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687986" ref_strand="+" ref_description="SGN-E687986 [T3_tus_81_P07]">
      <seq>ctttgttgactatagctacaacacatcatggagaacttaaaacccttaaatacagcaatcatgcatttgaaaatgcatgtatggagttcgatgaaatgaagttgaaaccaacttttaggattctttggggaataccaggacggtctaatgcaatcaatatagccgaaaggctcgggatgcctgatgccattgtgcataaggctcgtgaactttatggagctgctagtgcagaaatcaatgaggtcatacttgacatggagagatttaagcagaactatcatgagcaagttcgtgagtcacagcgtcttcttaagctcactaaaggcctccatcataagttgcttattgccagaaaaaatgtgaaagaacacagcattaatcaaagattcagaaaggaacaggaaatatttgaagcagctgcagtagcacgatcttccattcaaaggagagcacgacaatatcgtgcaatttctagtcaaccatcccagaaaatattgggaagtaatggacccacatcaactatgaaaactgaagctaaagaggaaaaaagtaaaatttcagaagcaactcctgctgtgtactactccagtacatccnggttgcctctttcagccnagaggaggaaacttcccaatgttggtgactcagtccacgttccttcgcttaacaagcaagctttagtcctgaaagtcgatccttctagagaagagcttttggtacaagctggtaacatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84437" stop="79634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84137" g_stop="84083" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84082" i_stop="84000" i_length="83">
            <donor d_prob="0.556" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83999" g_stop="83917" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="138" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83916" i_stop="83023" i_length="894">
            <donor d_prob="0.137" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83022" g_stop="82919" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="242" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82918" i_stop="81361" i_length="1558">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81360" g_stop="81290" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="313" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81289" i_stop="80508" i_length="782">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80507" g_stop="80209" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="612" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80208" i_stop="80059" i_length="150">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80058" g_stop="79934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="737" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E687986" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84137" e_stop="84083"/>
          <exon e_start="83999" e_stop="83917"/>
          <exon e_start="83022" e_stop="82919"/>
          <exon e_start="81360" e_stop="81290"/>
          <exon e_start="80507" e_stop="80209"/>
          <exon e_start="80058" e_stop="79934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAATACAGGTGCTCAATGCTAAGATGGAACTTTTATATGAGACAAAAGGCTTACCTTCTCTAACATCATGGTGCTACAATGTACTTTACAGCAATCATGCATTTGAAAATGCATGTATGGAGTTCGATGAAATGAAGTTGAAACCAACTTTTAGGATTCTTTGGGGAATACCAGGTTGTCCTTGTATCCATGTGGTAGTTTCTTGATTAGCTTGGAATTTCTTATATGACTGATCATAGGATGTCATGTTCCTTCTTGTGGCAAGAAGAAGAGAAGAAATGATACTTCTTACTTTGTCTTAAAAAGAAAAAAATAACCTCTTTACTCCCAGATCAAATATTTCAGGGCACAATCTCAATGTCACAAAATATTTTTGAAATGCAGTTTTCCTATTTATCATACTTCTCAAGACCTTTACACTTTCAATCATTACCAGATATTCCTCAGATAACCTTTTTTAGCTCATCATTGAGATAGTACCAAGTAAAAGTGTAAAACCATGGTGTACACTATGATTTAGTAAATTACCATGAGTTTTGGGATTGCACAATTCTGTTCTAAGTGCAGTCTGTCTATAATAAGTTGTTTATTCTGGTTCAAGTTTACCTTGCATTATCAGATACGCAAATTCTCATTCCGTTTTTAAAAACTGGACCTACTTAGTAGTTGCGGAGTCGAGAGCTTTCTTGTTTCAGTGTTAATTTTTTAATTGTTTCTTGTATTTTGGCCTCTACCATATGTGTTCGAGATTTCTTCTTATGCAGTTTCCTCATCTGCATAATTCAATTTAATAGATATTTGAACCGGGATTGGGTCAAGCGGATGTACTCATTATTCGGTGACCTTCTTACTTGACCGGGCAAAAGGGGCTGGGGTCCAATGACGAGAAATCAAGGATAATTGTATATTATAATCCATTGACAAATTTCAGAGGATATTCTCTAAAGATGGCACAATTCAAACTTACTTTAGATAGTTTTTGATTCTTTGATGTCTAATTATCATGAGGTGATCGTATCATTGATTTTTTCGGTAGCATCTCTGATTTACAGACTTCTACAACTGCAGGACGGTCTAATGCAATCAATATAGCCGAAAGGCTCGGGATGCCTGATGCCATTGTGCATAAGGCTCGTGAACTTTATGGAGCTGCTAGTGCAGAAATCAATGAGGTACTTCCATATCATACCATTAACTTCGGTATTCAGGATGTAGATACTTGTAATTGATGAAAGGTTTGCATGGCATGTTTATAGTTAACCCTATATTGCTACTGTGCATCCTTTAATTTTTATTGAGAAATACATAATTTGCTTTGTCCTAAAAAGTCATTTACACACCTTAACTTTACGGGAAGCCTCTTACCCCTTACTATTGTCTAAAGTGATTCTAATACCTCCTTGAATATAAAGAACAAGTCATGTGTTGGGTCATGTTTTGCACGTGAACCACATGTCAGTTGCTGCTTCATTTTATTTTTTCACTGCTTTTCCTTCTTTTGTTTCCTTCTTTTTTGAGCAGCTTATTACAAAATGAGTCCAAAGTAAGTGATCTTCTCTTTTACTGCCAAACCTTTCGCCACTGCCAAATTATTCACCACTCAAATTGAAAACAACATTTAGTTATTTGGATTATCATATGATTTCAAAAGCAGATTAGCGTAAAGATCAAACCCCAGTCGATCATTTCCTTATCTTGCTTATTGAGTAGTTATTTCGTATCGTCAGAGTAAAGCCTTGACGGAACCAGAGTCACAAATACCAGCATAACTGACTGTAATACTAGAACCAGGGACTGGAAAAAGCTCCTGCTTGGGGTTCCGAAACGTACTCAATGTCCTGATATTGGGACCCAAAACAGCTGTCATTTTTCTTGGCACCATAAAACCTGATACTTCTGATCCAAAAAGGATACAGAACCCATCTTGTCGGAAAAAATGCCACCCAGCAAAAAAGATTTGCTGCTGGCCAGAGTTTAAAAAGGAGATATATATGACTGAAGGTGGAAGTGAAACGTGTGACGTAGTGAAGAGAATGAAGAGGCAAGGTAGTGGCTGTAATTTTGAAATGGTGGTCATTTCGAGTTTTATTTTTAAAGAAAGCTGGTACAAGGAGATGGAAAAAAATAAGACAGTAAAGAATAAGTCATGATTTTTAAAAAAATAATAAATTTGTATAATATCCAATTGAAAAGAAACACAAGTACATTTTTAGTCTGTTTTTAATGTTCTTTTTCCTTTCGCGTGCATATAGGAAAGAAAAACAATTTTTTGCCACGTCGATTCTCAGGGGGTGGTTAATACGTAATACTTTGAACAAGAATAGCGCTGTGATAGGTCGCCCGTAAAGTTGAAGTGGGTAAATGATTTTTCTAGACAAGATGGATATAATTCCTATTTTTATTGAATAGATTGCTTACCAAATCCCTGGATTTATTGCCACTTCATAGAAACATATACACCAAGAAGTTTGCTGACCTGTAATTAGCTTCTGTTGATTGTAGTTTCATGAGTAATTTCAATTGGTTCTCGAAAACAGAAGTTCCTTTCTCATCATATGCTCTTGTTAGAATAATGCGCAAGAAAAGTATTTACTTCAAACACAATAATAAGTCATTATGACAACAAATTTGTGCATCTGAACATTGCACGAATCTGATTTTCTTAAGCATTTTAATTTTTATTAATTAGCAGTTGCTTTTCTAAGACTTTTTGCCAACATTTTAATGCAGGTCATACTTGACATGGAGAGATTTAAGCAGAACTATCATGAGCAAGTTCGTGAGTCACAGCGTCTTCTTAAGTGAGGATCCTGTGTTACCTTTGCTGATTCCATATACCCTCAGTAATCACCAAAATAGATCTATTTTCCCTTATGCAGTAGTTTTGGTCGTTGAAACTGTTTCAAAATTGATTTTGTTGCATTATAGATCTCAATCTTCTCGTTGTTGATAGTTGTTTAGCAAAGGGATCTGATCAAACCAAATCAAGAAGCAACAAGTTAAAAATGGAAATAAATAACGGCGCTCTATGGCTATCAGATGCCTCATCCTAGTTACTGAGATAGCCTAATACTAGTTGGCCTCTATCTGAACCTAAGAACCTAGAGTGAGAGTGTGTGTATGGATAGAGAAAAAGAAAAGAAAAGAAAAGGAAAGATATGGGGTAGCAGATGGTTGTTGAAATATGGTAACTAAAGTAACTCTCAGCTGCAAAAGCAGAGAAGTAGTGACAAGTCTGGCTGGTCTGCAGAAGCAGAGAGCAAAACATGAAAGTTATGGTAGTGAGAGGGAGCAGTAGTAATTGGAATGTTCAGACTGGTGGCTGTTTGATAGAAAAGATTTCAAGTTGAGCTTGACTTTTGATCTATGTTATATATGCTGATGGTGGCTGAAAAAATTTTGTGAAAGCAGTTCTAATGAATACTATTACCAGAAATGCTGTTCATAAAAGAAATTACCAGAAGATTTCACATTTCATTAGGGATTCTTTTTCCCTAGGCAGCCTTTTGCTTTTTTTTCTTGCAGTAAACTAACTATCAAAAATCTCACGTCGTGTGCATTTGTTCTGTGCCTTTTGATTTAGGCTCACTAAAGGCCTCCATCATAAGTTGCTTATTGCCAGAAAAAATGTGAAAGAACACAGCATTAATCAAAGATTCAGAAAGGAACAGGAAATATTTGAAGCAGCTGCAGTAGCACGATCTTCCATTCAAAGGAGAGCACGACAATATCGTGCAATTTCTAGTCAACCATCCCAGAAAATATTGGGAAGTAATGGACCCACATCAACTATGAAAACTGAAGCTAAAGAGGAAAAAAGTAAAATTTCAGAAGCAACTCCTGCTGTGTACTACTCCAGTACATCCAGGTTGCCTCTTTCAGGTAACATAATTTCTTTCTTCTTTCTTTTATGTGATGATCATTATTGCTTGTCAACGGACAATGGTTTGCTACCATCTATTATATTTTCTTGTTTTACATGAATCAAAATATCCACTATTGGTTGCAATGATCTGTTTTGCCTATATACAGCCAAGAGGAGGAAACTTCCCAATGTTGGTGACTCAGTCCACGTTCCTTCGCTTAACAAGCAAGCTTTAGTCCTGAAAGTCGATCCTTCTAGAGAAGAGCTTTTGGTACAAGCTGGTAACATGAAG</genome_strand>
        <mrna_strand>CTTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAATACAG...................................................................................CAATCATGCATTTGAAAATGCATGTATGGAGTTCGATGAAATGAAGTTGAAACCAACTTTTAGGATTCTTTGGGGAATACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCTAATGCAATCAATATAGCCGAAAGGCTCGGGATGCCTGATGCCATTGTGCATAAGGCTCGTGAACTTTATGGAGCTGCTAGTGCAGAAATCAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATACTTGACATGGAGAGATTTAAGCAGAACTATCATGAGCAAGTTCGTGAGTCACAGCGTCTTCTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACTAAAGGCCTCCATCATAAGTTGCTTATTGCCAGAAAAAATGTGAAAGAACACAGCATTAATCAAAGATTCAGAAAGGAACAGGAAATATTTGAAGCAGCTGCAGTAGCACGATCTTCCATTCAAAGGAGAGCACGACAATATCGTGCAATTTCTAGTCAACCATCCCAGAAAATATTGGGAAGTAATGGACCCACATCAACTATGAAAACTGAAGCTAAAGAGGAAAAAAGTAAAATTTCAGAAGCAACTCCTGCTGTGTACTACTCCAGTACATCCNGGTTGCCTCTTTCAG......................................................................................................................................................CCNAGAGGAGGAAACTTCCCAATGTTGGTGACTCAGTCCACGTTCCTTCGCTTAACAAGCAAGCTTTAGTCCTGAAAGTCGATCCTTCTAGAGAAGAGCTTTTGGTACAAGCTGGTAACATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328642" ref_strand="+" ref_description="SGN-E328642 [cTOC-23-N18]">
      <seq>tttgttgactatagctacaacacatcatggagaacttaaaacccttaaatacagcaatcatgcatttgaaaatgcatgtatggagttcgatgaaatgaagttgaaaccaacttttaggattctttggggaataccaggacggtctaatgcaatcaatatagccgaaaggctcgggatgcctgatgccattgtgcataaggctcgtgaactttatggagctgctagtgcagaaatcaatgaggtcatacttgacatggagagatttaagcagaactatcatgagcaagttcgtgagtcacagcgtcttcttaagctcactaaaggcctccatcataagttgcttattgccagaaaaaatgtgaaagaacacagcattaatcaaagattcagaaaggaacaggaaatatttgaagcagctgcagtagcacgatcttccattcaaaggagagcacgacaatatcgtgcaatttctagtcaaccatcccagaaaatattgggaagtaatggacccacatcaactatgaaaactgaagctaaagaggaaaaaagtaaaatttcagaagcaactcctgctgtgtactactccagtacatccaggttgcctctttcagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84436" stop="79909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84136" g_stop="84083" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84082" i_stop="84000" i_length="83">
            <donor d_prob="0.556" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83999" g_stop="83917" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83916" i_stop="83023" i_length="894">
            <donor d_prob="0.137" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83022" g_stop="82919" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="241" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82918" i_stop="81361" i_length="1558">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81360" g_stop="81290" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="312" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81289" i_stop="80508" i_length="782">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80507" g_stop="80209" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="611" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E328642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84136" e_stop="84083"/>
          <exon e_start="83999" e_stop="83917"/>
          <exon e_start="83022" e_stop="82919"/>
          <exon e_start="81360" e_stop="81290"/>
          <exon e_start="80507" e_stop="80209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAATACAGGTGCTCAATGCTAAGATGGAACTTTTATATGAGACAAAAGGCTTACCTTCTCTAACATCATGGTGCTACAATGTACTTTACAGCAATCATGCATTTGAAAATGCATGTATGGAGTTCGATGAAATGAAGTTGAAACCAACTTTTAGGATTCTTTGGGGAATACCAGGTTGTCCTTGTATCCATGTGGTAGTTTCTTGATTAGCTTGGAATTTCTTATATGACTGATCATAGGATGTCATGTTCCTTCTTGTGGCAAGAAGAAGAGAAGAAATGATACTTCTTACTTTGTCTTAAAAAGAAAAAAATAACCTCTTTACTCCCAGATCAAATATTTCAGGGCACAATCTCAATGTCACAAAATATTTTTGAAATGCAGTTTTCCTATTTATCATACTTCTCAAGACCTTTACACTTTCAATCATTACCAGATATTCCTCAGATAACCTTTTTTAGCTCATCATTGAGATAGTACCAAGTAAAAGTGTAAAACCATGGTGTACACTATGATTTAGTAAATTACCATGAGTTTTGGGATTGCACAATTCTGTTCTAAGTGCAGTCTGTCTATAATAAGTTGTTTATTCTGGTTCAAGTTTACCTTGCATTATCAGATACGCAAATTCTCATTCCGTTTTTAAAAACTGGACCTACTTAGTAGTTGCGGAGTCGAGAGCTTTCTTGTTTCAGTGTTAATTTTTTAATTGTTTCTTGTATTTTGGCCTCTACCATATGTGTTCGAGATTTCTTCTTATGCAGTTTCCTCATCTGCATAATTCAATTTAATAGATATTTGAACCGGGATTGGGTCAAGCGGATGTACTCATTATTCGGTGACCTTCTTACTTGACCGGGCAAAAGGGGCTGGGGTCCAATGACGAGAAATCAAGGATAATTGTATATTATAATCCATTGACAAATTTCAGAGGATATTCTCTAAAGATGGCACAATTCAAACTTACTTTAGATAGTTTTTGATTCTTTGATGTCTAATTATCATGAGGTGATCGTATCATTGATTTTTTCGGTAGCATCTCTGATTTACAGACTTCTACAACTGCAGGACGGTCTAATGCAATCAATATAGCCGAAAGGCTCGGGATGCCTGATGCCATTGTGCATAAGGCTCGTGAACTTTATGGAGCTGCTAGTGCAGAAATCAATGAGGTACTTCCATATCATACCATTAACTTCGGTATTCAGGATGTAGATACTTGTAATTGATGAAAGGTTTGCATGGCATGTTTATAGTTAACCCTATATTGCTACTGTGCATCCTTTAATTTTTATTGAGAAATACATAATTTGCTTTGTCCTAAAAAGTCATTTACACACCTTAACTTTACGGGAAGCCTCTTACCCCTTACTATTGTCTAAAGTGATTCTAATACCTCCTTGAATATAAAGAACAAGTCATGTGTTGGGTCATGTTTTGCACGTGAACCACATGTCAGTTGCTGCTTCATTTTATTTTTTCACTGCTTTTCCTTCTTTTGTTTCCTTCTTTTTTGAGCAGCTTATTACAAAATGAGTCCAAAGTAAGTGATCTTCTCTTTTACTGCCAAACCTTTCGCCACTGCCAAATTATTCACCACTCAAATTGAAAACAACATTTAGTTATTTGGATTATCATATGATTTCAAAAGCAGATTAGCGTAAAGATCAAACCCCAGTCGATCATTTCCTTATCTTGCTTATTGAGTAGTTATTTCGTATCGTCAGAGTAAAGCCTTGACGGAACCAGAGTCACAAATACCAGCATAACTGACTGTAATACTAGAACCAGGGACTGGAAAAAGCTCCTGCTTGGGGTTCCGAAACGTACTCAATGTCCTGATATTGGGACCCAAAACAGCTGTCATTTTTCTTGGCACCATAAAACCTGATACTTCTGATCCAAAAAGGATACAGAACCCATCTTGTCGGAAAAAATGCCACCCAGCAAAAAAGATTTGCTGCTGGCCAGAGTTTAAAAAGGAGATATATATGACTGAAGGTGGAAGTGAAACGTGTGACGTAGTGAAGAGAATGAAGAGGCAAGGTAGTGGCTGTAATTTTGAAATGGTGGTCATTTCGAGTTTTATTTTTAAAGAAAGCTGGTACAAGGAGATGGAAAAAAATAAGACAGTAAAGAATAAGTCATGATTTTTAAAAAAATAATAAATTTGTATAATATCCAATTGAAAAGAAACACAAGTACATTTTTAGTCTGTTTTTAATGTTCTTTTTCCTTTCGCGTGCATATAGGAAAGAAAAACAATTTTTTGCCACGTCGATTCTCAGGGGGTGGTTAATACGTAATACTTTGAACAAGAATAGCGCTGTGATAGGTCGCCCGTAAAGTTGAAGTGGGTAAATGATTTTTCTAGACAAGATGGATATAATTCCTATTTTTATTGAATAGATTGCTTACCAAATCCCTGGATTTATTGCCACTTCATAGAAACATATACACCAAGAAGTTTGCTGACCTGTAATTAGCTTCTGTTGATTGTAGTTTCATGAGTAATTTCAATTGGTTCTCGAAAACAGAAGTTCCTTTCTCATCATATGCTCTTGTTAGAATAATGCGCAAGAAAAGTATTTACTTCAAACACAATAATAAGTCATTATGACAACAAATTTGTGCATCTGAACATTGCACGAATCTGATTTTCTTAAGCATTTTAATTTTTATTAATTAGCAGTTGCTTTTCTAAGACTTTTTGCCAACATTTTAATGCAGGTCATACTTGACATGGAGAGATTTAAGCAGAACTATCATGAGCAAGTTCGTGAGTCACAGCGTCTTCTTAAGTGAGGATCCTGTGTTACCTTTGCTGATTCCATATACCCTCAGTAATCACCAAAATAGATCTATTTTCCCTTATGCAGTAGTTTTGGTCGTTGAAACTGTTTCAAAATTGATTTTGTTGCATTATAGATCTCAATCTTCTCGTTGTTGATAGTTGTTTAGCAAAGGGATCTGATCAAACCAAATCAAGAAGCAACAAGTTAAAAATGGAAATAAATAACGGCGCTCTATGGCTATCAGATGCCTCATCCTAGTTACTGAGATAGCCTAATACTAGTTGGCCTCTATCTGAACCTAAGAACCTAGAGTGAGAGTGTGTGTATGGATAGAGAAAAAGAAAAGAAAAGAAAAGGAAAGATATGGGGTAGCAGATGGTTGTTGAAATATGGTAACTAAAGTAACTCTCAGCTGCAAAAGCAGAGAAGTAGTGACAAGTCTGGCTGGTCTGCAGAAGCAGAGAGCAAAACATGAAAGTTATGGTAGTGAGAGGGAGCAGTAGTAATTGGAATGTTCAGACTGGTGGCTGTTTGATAGAAAAGATTTCAAGTTGAGCTTGACTTTTGATCTATGTTATATATGCTGATGGTGGCTGAAAAAATTTTGTGAAAGCAGTTCTAATGAATACTATTACCAGAAATGCTGTTCATAAAAGAAATTACCAGAAGATTTCACATTTCATTAGGGATTCTTTTTCCCTAGGCAGCCTTTTGCTTTTTTTTCTTGCAGTAAACTAACTATCAAAAATCTCACGTCGTGTGCATTTGTTCTGTGCCTTTTGATTTAGGCTCACTAAAGGCCTCCATCATAAGTTGCTTATTGCCAGAAAAAATGTGAAAGAACACAGCATTAATCAAAGATTCAGAAAGGAACAGGAAATATTTGAAGCAGCTGCAGTAGCACGATCTTCCATTCAAAGGAGAGCACGACAATATCGTGCAATTTCTAGTCAACCATCCCAGAAAATATTGGGAAGTAATGGACCCACATCAACTATGAAAACTGAAGCTAAAGAGGAAAAAAGTAAAATTTCAGAAGCAACTCCTGCTGTGTACTACTCCAGTACATCCAGGTTGCCTCTTTCAG</genome_strand>
        <mrna_strand>TTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAATACAG...................................................................................CAATCATGCATTTGAAAATGCATGTATGGAGTTCGATGAAATGAAGTTGAAACCAACTTTTAGGATTCTTTGGGGAATACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCTAATGCAATCAATATAGCCGAAAGGCTCGGGATGCCTGATGCCATTGTGCATAAGGCTCGTGAACTTTATGGAGCTGCTAGTGCAGAAATCAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATACTTGACATGGAGAGATTTAAGCAGAACTATCATGAGCAAGTTCGTGAGTCACAGCGTCTTCTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACTAAAGGCCTCCATCATAAGTTGCTTATTGCCAGAAAAAATGTGAAAGAACACAGCATTAATCAAAGATTCAGAAAGGAACAGGAAATATTTGAAGCAGCTGCAGTAGCACGATCTTCCATTCAAAGGAGAGCACGACAATATCGTGCAATTTCTAGTCAACCATCCCAGAAAATATTGGGAAGTAATGGACCCACATCAACTATGAAAACTGAAGCTAAAGAGGAAAAAAGTAAAATTTCAGAAGCAACTCCTGCTGTGTACTACTCCAGTACATCCAGGTTGCCTCTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736093" ref_strand="+" ref_description="SGN-E736093 [LC04BC06]">
      <seq>gatattgatggcagatggtgcattatatcaggatttaatcagcgaacgagctttgaggggctactgttatccaggtactggaagtgttctcgaacctctctcagcagttccgttgaatgatgcactccagcaagctaaggcatctgtgtcaaaggctgaggttgatgtgctcctgaagataacacagaagatgcaagaagaaattgattatattgaaagcattttcagcatgatggttaggctggatgtgatcaacgctagagcacgatatggtcttgcatttggaggtgcttgtcctgatttatttttgcaacaagaacaggatagctttgtagctactgatgcttcactggacgcaagaacctcagtggcattgcatcctacacggaagaaatggacaatgtatctgccaaaagcttatcatcctttattacttcaaaagcatcagcaggctctacagaaggccataaaagatgtcaagaatgccaatgcggaaattaggaggaggaagcagcagggaggaaactttactctgagaaaagaaactgatttgactttacagtccttggaagcaaaggttgctaagttgaaagaggaaccacctgttcctgttgacctatatgttgcgcacaacactcgagttttggttataactggtcctaatactgggggtaaaaccatttgcttgaagactgtgggtttggctgctttgatggcaaaatccggtctttatgtgttagcatcagaatcagtgaaaatcccttggtttgattttgtatttgctgatattggtgatgaacagtccttatccccatcactgtctaccttctcgggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="91363" stop="86012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91063" g_stop="90990" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90989" i_stop="89869" i_length="1121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.120" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89868" g_stop="89753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="190" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89752" i_stop="89674" i_length="79">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89673" g_stop="89614" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="250" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89613" i_stop="88900" i_length="714">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88899" g_stop="88657" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="493" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88656" i_stop="87597" i_length="1060">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87596" g_stop="87513" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="577" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87512" i_stop="87422" i_length="91">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87421" g_stop="87274" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="725" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87273" i_stop="86424" i_length="850">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86423" g_stop="86312" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="837" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E736093" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91063" e_stop="90990"/>
          <exon e_start="89868" e_stop="89753"/>
          <exon e_start="89673" e_stop="89614"/>
          <exon e_start="88899" e_stop="88657"/>
          <exon e_start="87596" e_stop="87513"/>
          <exon e_start="87421" e_stop="87274"/>
          <exon e_start="86423" e_stop="86312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGATGGCAGATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAGGTTTGTTAATATCTTAAAGTCTTTAACTTATTGGGGCTTATGTAAATAACTTTGTATAATGTTTGTACATTTTGTTTTATGTCATTTGCTGTCTCCATCTCGAAAGCTCTGTATAGGTAATGAACTTGCTAAGCAGAAGTTTGTGACATCATAAATTAGGAAATGACAAGAATACTGTTTTGAGTAATGCTCTGCTGCTGAAATTGAGTTGGAATTGTTCATTTCTTTCCTGGAATTGGAATTCCTCAGATATTGGTTCAGTAATTCTACTTTTGAGGTTGATTTTTTGAAAAATTAATACAGGTGCTTATAAACAAGACTTCTCAAAACCCTCTGGTATGGCATTAGTGAATAGTTCTAATCTTCTGAACTACTGTTTGATAACTTGTAAGATTTTGTCGCACAAAAACTGAATAAATCCCTTTTACAAGTTGAAGACAAACAATTAGGGAACTCTTGGAATGGCATTCAATCAGCTATATAAAATATGATGCTGTTAAAAAAAGTTCACAAATTTGATTGTCTTACATTCTCCACAAGTGCACCAAAAATAGCGTGATATTTCCAGTAGGGGATGTGATACTACTTTGTCATGATCCATTTCTTCCACTCCCAATAGTTGTGGGCTTACTCTTTTTCAAAAGTTAATGCTATTGATGTAAAAAAAAGATTAAGCAACATAGAGCTGACACAACTACTAGTAAAAGGGGAGAAAGTTGACTTAGCCCTGACTTTCTTTACAAGAGGTCCTATGAACCATAACAGGGCTTCAGAACCTCATTGATGTAAAAACAAACAGCTTAAAAAAGTGTGGGTGATTATATCCAAAATTGTTGTAGGATTTCCGTAAGACGTGGCCCTTGGGCTTAACTGAACCCCAGAAGCTAGCTCATGAGGGAGAATTCCCAAGTCTATTTAAGGAGACTACTAGCGCATTTCCCAACTAATGTGGGACTGTAAATAAGCTATTGTTCCCCTTAGTTAAGCCTAATGTTATACAAGTTTGGTGAAAAAAAATGCTGCTAGATCACCATGAATAAGCTTGACATTATTCAGGTCATTAATGCTTTATAGTATTATTCATCATCTCTGAGCAGTGATAGTCAATTTCAGTGCTTCAGGTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAGGTTTGTTTAACTTATGCCCCCTCCCCCCCTTGTGTTGTCATAAACGGAAACTAACCAGTTGTTTTTTATTTCTACGCAGATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTGGTAGGTTCTATTATTTTAAATTATAACTTTCTTGTACCTCTGATTATTTCTTTTCTAATTTTGTTTCTTCTAATATTTGTATGTTATTTAAAAGACAGGATCCATGTGTTCATTTTTACAATAGATGATAACCAAAATGAGCTTCACATTGGCGGGAATAGATTTTGAAATGGGTTTATAAGGCTCTGGATCCTACACTACTAACAACTTCAGCTTAAGTGTGTTTGTTTAGCGAGAATGAGATCTAGTTGGGTGAACAAGTATGGAATACTATAAGTTGTTTAGTGGCTAGCGTTGGGGCACTCCAGAATGATCCTGTTATACCTTATTGATTGGAGTACTAATTATTGGAGCAGCTGTGCCATGCCAATTGTGACTGTTGCGAATGTCATAATTGACTGCTAACATCTGAATAATTAAAAGTTTCTGCAAATATTTATCGTTTCACTCTCTTTATCAATAAAACATTTATGTTCCGCTTTGTTCACGTGTTTATTGTTTCTCCAACTCAGAGCCTTAACAATTTCAAAATTTGTTTGGCCTTACAATCTGAGGCCTACTACAGTTTAATGCTCTTTGGTCTATTATGTCAAGTAGAACATTGTTCACAAGTTGACCATTTAGTGGGATTTATTTGATGTCACGTATATTAAGTGTTTAATTTATTTTGTTACTGATGTTATTCATTTTTCATTGTCATTCCCATATCTACAGATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACAGAAGGCCATAAAAGATGTCAAGAATGCCAATGCGGTAAGTCACTCTCCATATAATTATGCAAATGGAACACGGAAAGCTGTTAGATTCTCCTAGCATTTCAAAAGTTCCCTCTTATAGCCTGTCTTTGAGATATGGACAGATTGCAACATAATCTGGTGGGTACTTGCACCAAGCAATCTCTCTTCAGGATGGTTTTTATTTTATCAAAGAAAAAAGATTATCCATAACTATGAATCTCCTGTCGTTTGAGTTGGAATCTATGAGAGTGCCGAGACTATAGCCGAGTTCCATGAAATATATAAAGCTTTCTATGAAAAGATTCAGTAATTTATCATAATTGTTTTTGTTCTGTTGGAGCTCTTTTTGGATAAAATTAGTTACTTGTATGAGTGGGTAAGATCCTGTTGTAAGTGTTTCCTCTTTTTTATTTTGTAATCTTCACAAAAGGTTTTGTGGGTTTCATATACCTGGTCAGCTCATATGCATGGAAGCTAAATTACTACTATGTATGGGTCAGGTGTGGTTGTGGATTCTTTAAGGGTGGGATATGGCTTTTTAGTAAGCTTGCTCAGTATCTATTCCAATTATTATCTTATAGAGCCACCTTAATACCTTCCTTGACCAATAATTGCAACCTGTGAAGTCGATACTATCTGAGGGTGAGGTTCTTGTGAGAATAGAAGTGGCAAGTGGAAACATTTCTGATTCCTCTTCGTTTTATTCCTTAAATATTGTTTTGATAGAGAACTTTAAGAAAGTTTTGTTGGGACAATAAGTTGTTAGAAACACGTTACTGCTCTCTTTTGGTGAAACAGTTACTGCTGCTGTTAACATCTGGGAATAAGTTTTTATAGGCCTCAGTAGAATCGTAACTCTAGAGATACTGTGACAATGCATCTGATCATAACAGCTTCTAGATTCCATGCTATGTTTGAATAGCCTTTCTTCTCTATTCTATCAGATGCTGGCTCCATTGGTTATATTCTCATAACAATTTTGTGGATTCTCATCATCATGATAACTTTGGGGTGATATGCACCTAATTGAATCACTTTGAGTTCTCTTAAAAATTCAGTTGGTCTTTTGTGTATAGGAAATTAGGAGGAGGAAGCAGCAGGGAGGAAACTTTACTCTGAGAAAAGAAACTGATTTGACTTTACAGTCCTTGGAAGCAAAGGTAATTTTTTGAATTTGATCGCTGGCATTTGATGGTTTATGCAAAATTTCCATTGTAAATGAATGAAGTACTTTTAACCTGTTGACTTCAGGTTGCTAAGTTGAAAGAGGAACCACCTGTTCCTGTTGACCTATATGTTGCGCACAACACTCGAGTTTTGGTTATAACTGGTCCTAATACTGGGGGTAAAACCATTTGCTTGAAGACTGTGGGTTTGGCTGCTTTGATGGCAAAATCCGGTCAGCACAAGTACTATATATTTATACATTATACTTTGTTCATCAAGTCAACTCACAAATGAAAACTTTCCTTGTACCTCAATATATCTACTAGACATTATATATTAAAACATCAAAAGTCATCAGTTACCACTATCCTATGCAAAGAGGCAATTGAGAACCTATCAATAAGTTGAAACGTGCTTAAATTTACTTTCCTGACATTCACATCCATTTTCATTTCTATGCCTTGATATCATCTATTGTTGAATTAGGATTCCCGCCAAATTATTAAATCGGTTTTTCCTGGTCATGTTTCTTGTTCCTTCATAAATCATATGCTACTTATACAAACACAAACTCATCCTCCATTACGACCTGCAACTTCACAAGTTTTTTGAAATTTTTTTCGTGAAGATGGTGTCAAGGCCAACTAACACGCCTCAGCCTTTCCACTAGGTACATGCATCCTTCCACTAGTACAAGTTTTGGTTACCATGCTAACAAAAGGCTTACGCAGATAGGAAGAAAATCACATATGCTATTGGGTTCCGAGCCTTGGTTTTCCATGATCTTCACCTAAGCCTCGGCCGTATTTATATTTTGTTGGTAACTAGGTGCTGCTCAGACCTATTTAAAATTGTGTTTGAGGTCTCCTCTTGGTTCAAATAGATCGAGGAAATTTAGTCTTGGTATTCTTCCACTGCCACCCTTTCGTACATTTTGTTAATCTCTGTGTTTTCCCCAACAAGCATATTAGTAGGTAGTACGCTTTCTAAGAGCACAAACTCTTGGTTGTGCACAAAAGCACTTATATTTGTGTTATCTTATATTGAAGTGTATAACTTTTAATGTTAGACTAGATTTGCAGGTCTTTATGTGTTAGCATCAGAATCAGTGAAAATCCCTTGGTTTGATTTTGTATTTGCTGATATTGGTGATGAACAGTCCTTATCCCAATCACTGTCTACCTTCTCGGGCCA</genome_strand>
        <mrna_strand>GATATTGATGGCAGATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAG...............................................................................ATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACAGAAGGCCATAAAAGATGTCAAGAATGCCAATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTAGGAGGAGGAAGCAGCAGGGAGGAAACTTTACTCTGAGAAAAGAAACTGATTTGACTTTACAGTCCTTGGAAGCAAAG...........................................................................................GTTGCTAAGTTGAAAGAGGAACCACCTGTTCCTGTTGACCTATATGTTGCGCACAACACTCGAGTTTTGGTTATAACTGGTCCTAATACTGGGGGTAAAACCATTTGCTTGAAGACTGTGGGTTTGGCTGCTTTGATGGCAAAATCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTATGTGTTAGCATCAGAATCAGTGAAAATCCCTTGGTTTGATTTTGTATTTGCTGATATTGGTGATGAACAGTCCTTATCCCCATCACTGTCTACCTTCTCGGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343703" ref_strand="+" ref_description="SGN-E343703 [cTOF-20-F15]">
      <seq>tgtacctagtggaaaggctgaggcgtgttagttggccttgacaccatcttcacgaaaaaaatttcaaaaaacttgtgaagttgcaggtcgtaatggaggatgagtttgtgtttgtataagtagcatatgatttatgaaggaacaagaaacatgaccaggaaaaaccgatttaataatttggcgggaatcctaattcaacaatagatgatatcaaggcatagaaatgaaaatggatgtgaatgtcaggaaagtaaatttaagcacgtttcaacttattgataggttctcaattgcctctttgcataggatagtggtaactgatgacttttgatgttttaatatataatgtctagtagatatattgaggtacaaggaaagttttcatttgtgagttgacttgatgaacaaagtataatgtataaatatatagtacttgtgctgaccggattttgccatcaaagcagccaaacccacagtcttcaagcaaatggttttacccccagtattaggaccagttataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86531" stop="87653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86831" g_stop="87353" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E343703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86831" e_stop="87353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACCTAGTGGAAAGGCTGAGGCGTGTTAGTTGGCCTTGACACCATCTTCACGAAAAAAATTTCAAAAAACTTGTGAAGTTGCAGGTCGTAATGGAGGATGAGTTTGTGTTTGTATAAGTAGCATATGATTTATGAAGGAACAAGAAACATGACCAGGAAAAACCGATTTAATAATTTGGCGGGAATCCTAATTCAACAATAGATGATATCAAGGCATAGAAATGAAAATGGATGTGAATGTCAGGAAAGTAAATTTAAGCACGTTTCAACTTATTGATAGGTTCTCAATTGCCTCTTTGCATAGGATAGTGGTAACTGATGACTTTTGATGTTTTAATATATAATGTCTAGTAGATATATTGAGGTACAAGGAAAGTTTTCATTTGTGAGTTGACTTGATGAACAAAGTATAATGTATAAATATATAGTACTTGTGCTGACCGGATTTTGCCATCAAAGCAGCCAAACCCACAGTCTTCAAGCAAATGGTTTTACCCCCAGTATTAGGACCAGTTATAACC</genome_strand>
        <mrna_strand>TGTACCTAGTGGAAAGGCTGAGGCGTGTTAGTTGGCCTTGACACCATCTTCACGAAAAAAATTTCAAAAAACTTGTGAAGTTGCAGGTCGTAATGGAGGATGAGTTTGTGTTTGTATAAGTAGCATATGATTTATGAAGGAACAAGAAACATGACCAGGAAAAACCGATTTAATAATTTGGCGGGAATCCTAATTCAACAATAGATGATATCAAGGCATAGAAATGAAAATGGATGTGAATGTCAGGAAAGTAAATTTAAGCACGTTTCAACTTATTGATAGGTTCTCAATTGCCTCTTTGCATAGGATAGTGGTAACTGATGACTTTTGATGTTTTAATATATAATGTCTAGTAGATATATTGAGGTACAAGGAAAGTTTTCATTTGTGAGTTGACTTGATGAACAAAGTATAATGTATAAATATATAGTACTTGTGCTGACCGGATTTTGCCATCAAAGCAGCCAAACCCACAGTCTTCAAGCAAATGGTTTTACCCCCAGTATTAGGACCAGTTATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347815" ref_strand="+" ref_description="SGN-E347815 [cTOF-26-D20]">
      <seq>aacaactagttgatgaagatggttctgtcaaggattctgcgagctctgctttgaaacaatctcgtgatcaagttcgccttcttgaaagaaagttataccagttgatggaaaacataatcaggaacggcatggaagaagcatctgctgtgatggtgcattatatcaggatttaatcagcgaacgagctttgaggggctactgttatccagtgcttcaggtactggaagtgttctcgaacctctctcagcagttccgttgaatgatgcactccagcaagctaaggcatctgtgtcaaaggctgaggttgatgtgctcctgaagataacacagaagatgcaagaagaaattgattatattgaaagcattttcagcatgatggttaggctggatgtgatcaacgctagagcacgatatggtcttgcatttggaggtgcttgtcctgatttatttttgcaacaagaacaggatagctttgtagctactgatgcttcactggacgcaagaacctcagtggcattgcatcctacacggaagaaatggacaatgtatctgccaaaagcttatcatcctttattacttcaaaagcatcagcaggctctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93336" stop="88391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93036" g_stop="92996" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92995" i_stop="92645" i_length="351">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92644" g_stop="92594" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="92" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92593" i_stop="91321" i_length="1273">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91320" g_stop="91264" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="149" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91263" i_stop="91050" i_length="214">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91049" g_stop="90990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="209" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90989" i_stop="89877" i_length="1113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89876" g_stop="89753" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="333" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89752" i_stop="89674" i_length="79">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89673" g_stop="89614" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="393" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89613" i_stop="88900" i_length="714">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88899" g_stop="88691" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="602" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E347815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93036" e_stop="92996"/>
          <exon e_start="92644" e_stop="92594"/>
          <exon e_start="91320" e_stop="91264"/>
          <exon e_start="91049" e_stop="90990"/>
          <exon e_start="89876" e_stop="89753"/>
          <exon e_start="89673" e_stop="89614"/>
          <exon e_start="88899" e_stop="88691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCGGTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTCTTTCAAGCTTCTCAGAGGTCATGACACATGTCACTTCCTTGACATTTTCTTCTGCATCTTCTATACACGTGCATTAACTCTACTATTTGCTGTGGTTATATTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTTTTTTCAAGCTTCTCATAGGTCGTAACACAAGTCACTTCCTTGACATTTTCTTCTGCATCTTCTGTACACATGCATTGACTCTACTATTTGCTGTGGTTATATTCGACTTTATGAGTCTTATTAATATTACTTTATGGTTTTAGAGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAGGTAGACTTCATTCTTCTTCCTAATTGACTGTACTTCAGCAAATTTGGTGGTTATTACTTTTCAGAAACTTCTTTCCCTAGAAAATATCTTCAATATAATAATTTGTAATTTTTTATTTGCTGGTGTATATTTATGCTCTTTCCTTCATCTGTTATTTGTCTGTTCATAAGTTTGATAAAATCAAAGGCTAGTTTTTTACTTTATTATCATGTTGTGTGCATCCTCTTGAAATGATGGGCCGGACACTGTTATGTTGTTAATTCTTTAACTGTTATGAAAGAAAGTCAGCAGATCATGTAGTTATGTCTGAGCTGACTGCCTTAATATTTGACAGACAATGGACACTGAAGGTCATAAATCCATTTTATCAACAGCCTGTAGGTTGTTACCAAGGCTTATACCTTTTAAAATCTAGATTTCAGTTTGAATTGTTATCAAATTCATACAACTTGGCAAATATATTTGGCAAACATCCCAAGTTCCCAACTACTAGAAAAAACTAGCATTTGGAATTTTTTTATAAATTTTAAAATTACCCCAAACTTTTATATTTTGTACGGAACACCCATCATTTGTTAAGTCCAAATAATATTTATCTACCTCCTCCGGAAAAGTTTGACTTATAAGTTGAGGGACAAGATTGAGAAAAAAGAACAACTTGTTTTTAATGAGTTATAATTCCAATTGAATCAGTGACGAGTTTGATTATGCAATTAATGTATTGCTCTCGCCCATATTGTTATTTTGTTGTTGTTCATAGTTATCAATTATGTTATAAGGTTATTTTTAATGGAACATGTTCATTATAAAATTATAATACAAACTTATGGGTATAAATCATATTTTTTTGAAATTGTCAAATATTCTTGGGAAAATTTGTGACCAAACGCATGGTAAAACTTCACCAGAACTTCACTCAAAAATAACTTGCCAAGAATATTTGGAAATTTGTGACTGAACACTAGCTTAATACTTCCTAGGTTTTAATCTATTGTCTCTGCGCATGCAGTAGGCACATTAATAAAGTTTGATTGTTCTTTGGCACGAGAACTTTTAGAAAATGATACAAGGACTGCAGGAATTATCTATTTGGATATCTTTAATTAAAGCAGCACTTCTTACAAATGTCAGGAACCATTTGCCTCTTTGTTATATTTCTGTTAGGGGAATTCCCACATTGCTGGCTGGGTGTGAGAATGACTATGCTTTTGATGTGTCCTGCACCACACTCCCTGCTTGGACATTAACGCATTGCATTCTCTTGTATCTTCAGTTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTGGTAATCTGTCCTTAGTCCTAATCTTTAGTTTCCATCTGTACAACCTTAAGTCACTTTGATAACCAACAGGTTTTCCACATATTAATAATATTATTAAGAATCTTAAGCCCTGAATGTGGTAATGAAATAAAACAATTCTCTACCTTTCTGGCTTTACCATAGCACCTTGTGAACCTGATATTCTTACTCAGGAAGTGAGTGAAATTGATGGCAGATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAGGTTTGTTAATATCTTAAAGTCTTTAACTTATTGGGGCTTATGTAAATAACTTTGTATAATGTTTGTACATTTTGTTTTATGTCATTTGCTGTCTCCATCTCGAAAGCTCTGTATAGGTAATGAACTTGCTAAGCAGAAGTTTGTGACATCATAAATTAGGAAATGACAAGAATACTGTTTTGAGTAATGCTCTGCTGCTGAAATTGAGTTGGAATTGTTCATTTCTTTCCTGGAATTGGAATTCCTCAGATATTGGTTCAGTAATTCTACTTTTGAGGTTGATTTTTTGAAAAATTAATACAGGTGCTTATAAACAAGACTTCTCAAAACCCTCTGGTATGGCATTAGTGAATAGTTCTAATCTTCTGAACTACTGTTTGATAACTTGTAAGATTTTGTCGCACAAAAACTGAATAAATCCCTTTTACAAGTTGAAGACAAACAATTAGGGAACTCTTGGAATGGCATTCAATCAGCTATATAAAATATGATGCTGTTAAAAAAAGTTCACAAATTTGATTGTCTTACATTCTCCACAAGTGCACCAAAAATAGCGTGATATTTCCAGTAGGGGATGTGATACTACTTTGTCATGATCCATTTCTTCCACTCCCAATAGTTGTGGGCTTACTCTTTTTCAAAAGTTAATGCTATTGATGTAAAAAAAAGATTAAGCAACATAGAGCTGACACAACTACTAGTAAAAGGGGAGAAAGTTGACTTAGCCCTGACTTTCTTTACAAGAGGTCCTATGAACCATAACAGGGCTTCAGAACCTCATTGATGTAAAAACAAACAGCTTAAAAAAGTGTGGGTGATTATATCCAAAATTGTTGTAGGATTTCCGTAAGACGTGGCCCTTGGGCTTAACTGAACCCCAGAAGCTAGCTCATGAGGGAGAATTCCCAAGTCTATTTAAGGAGACTACTAGCGCATTTCCCAACTAATGTGGGACTGTAAATAAGCTATTGTTCCCCTTAGTTAAGCCTAATGTTATACAAGTTTGGTGAAAAAAAATGCTGCTAGATCACCATGAATAAGCTTGACATTATTCAGGTCATTAATGCTTTATAGTATTATTCATCATCTCTGAGCAGTGATAGTCAATTTCAGTGCTTCAGGTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAGGTTTGTTTAACTTATGCCCCCTCCCCCCCTTGTGTTGTCATAAACGGAAACTAACCAGTTGTTTTTTATTTCTACGCAGATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTGGTAGGTTCTATTATTTTAAATTATAACTTTCTTGTACCTCTGATTATTTCTTTTCTAATTTTGTTTCTTCTAATATTTGTATGTTATTTAAAAGACAGGATCCATGTGTTCATTTTTACAATAGATGATAACCAAAATGAGCTTCACATTGGCGGGAATAGATTTTGAAATGGGTTTATAAGGCTCTGGATCCTACACTACTAACAACTTCAGCTTAAGTGTGTTTGTTTAGCGAGAATGAGATCTAGTTGGGTGAACAAGTATGGAATACTATAAGTTGTTTAGTGGCTAGCGTTGGGGCACTCCAGAATGATCCTGTTATACCTTATTGATTGGAGTACTAATTATTGGAGCAGCTGTGCCATGCCAATTGTGACTGTTGCGAATGTCATAATTGACTGCTAACATCTGAATAATTAAAAGTTTCTGCAAATATTTATCGTTTCACTCTCTTTATCAATAAAACATTTATGTTCCGCTTTGTTCACGTGTTTATTGTTTCTCCAACTCAGAGCCTTAACAATTTCAAAATTTGTTTGGCCTTACAATCTGAGGCCTACTACAGTTTAATGCTCTTTGGTCTATTATGTCAAGTAGAACATTGTTCACAAGTTGACCATTTAGTGGGATTTATTTGATGTCACGTATATTAAGTGTTTAATTTATTTTGTTACTGATGTTATTCATTTTTCATTGTCATTCCCATATCTACAGATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACA</genome_strand>
        <mrna_strand>AACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCG...............................................................................................................................................................................................................................................................................................................................................................AGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTG......................................................................................................................................................................................................................ATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTCAGGTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAG...............................................................................ATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740178" ref_strand="+" ref_description="SGN-E740178 [LC20BF02]">
      <seq>gcatgatgctcctctcagtctcactgcttcccaattcatcatcgtcattcgccaccgtagcatttgctttcccaaaagttcccggcggtttcaggcagtccattcgaatcaaggtccatgccttcctaaacaaaccactggaatcgagctccgatcaaccatcggtgattctagacagtctcagggtcctcgaatgggacaaattatgcgattcggtcgctgccttcgccggtacttccttaggcaaagaagctctcaaggaacaactaggttatctgaatcaaacatttgaagagagtcttggactcttagaggaaaccaatgcggctgtggagatgaataagtacggtgccatggtggattttaatggcattgatattgagctggttaaaacggccatacgggttgcacgccatggttttcctgtcagtgggactgaagcattgaatgttgtagcactactgcagtttgtggaaatgctgcaggcaaatgtcaaagctgcagtcaagcaagacgcagaatggtatcagcgttttatgcctctcacagaaatgattatggaactaaccataagcaaatcactagtgaggttcatacaacaactagttgatgaagatggttctgtcaaggattctgcgagctctgctttgaaacaatctcgtgatcaaattcgccttcttgaaagaaagttataccagttgatggaaaacataatcaggaacggcatggaaaaagcatctgctgtggaagtgagtgaaattgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94371" stop="90753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94071" g_stop="93812" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93624" i_length="188">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93623" g_stop="93498" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="386" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93497" i_stop="93331" i_length="167">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93163" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="554" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93162" i_stop="93080" i_length="83">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93079" g_stop="92996" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="638" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92995" i_stop="92645" i_length="351">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92644" g_stop="92594" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="689" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92593" i_stop="91321" i_length="1273">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91320" g_stop="91264" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="746" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91263" i_stop="91073" i_length="191">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.829" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91072" g_stop="91053" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="766" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E740178" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94071" e_stop="93812"/>
          <exon e_start="93623" e_stop="93498"/>
          <exon e_start="93330" e_stop="93163"/>
          <exon e_start="93079" e_stop="92996"/>
          <exon e_start="92644" e_stop="92594"/>
          <exon e_start="91320" e_stop="91264"/>
          <exon e_start="91072" e_stop="91053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAGGTTAACTCTTCGTGTACTTACCTTTTTTCACTTTTCCTTCTGTTTGATTGAAGAATGAACTAATTACTTTAGCTCAGTGTATGTGAATGTGTGTTTGCATATGCATGTGTATAGTATATGTATAGGCTTGTGTATTTATGTGTATATACTTAAAAATACAGGATTATCAAAGGAATTGTTTGGTGCAGGAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTGGTAGGTCCTCAACTTCGTTTGTTTATCCTGTGGTGTACTGGTTTTGTTTGAAACTTTAGTTTGGTTCTTTGGAAATTGAACAATTTGGGTAAACTCATTGTTGTTCAAGTTCCTGCTTAAATTGCGAGTGGTGCAGAATGATGTTGTCTGTTCCTCTATTGTTGAAGGTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATGGTAATAAAATTCTGGCGACAATGAACTTTTCAGCAATCATATATGGTGCGTTTGTCTCCAATCATTTTCTATTTTTACTGCAGATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCGGTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTCTTTCAAGCTTCTCAGAGGTCATGACACATGTCACTTCCTTGACATTTTCTTCTGCATCTTCTATACACGTGCATTAACTCTACTATTTGCTGTGGTTATATTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTTTTTTCAAGCTTCTCATAGGTCGTAACACAAGTCACTTCCTTGACATTTTCTTCTGCATCTTCTGTACACATGCATTGACTCTACTATTTGCTGTGGTTATATTCGACTTTATGAGTCTTATTAATATTACTTTATGGTTTTAGAGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAGGTAGACTTCATTCTTCTTCCTAATTGACTGTACTTCAGCAAATTTGGTGGTTATTACTTTTCAGAAACTTCTTTCCCTAGAAAATATCTTCAATATAATAATTTGTAATTTTTTATTTGCTGGTGTATATTTATGCTCTTTCCTTCATCTGTTATTTGTCTGTTCATAAGTTTGATAAAATCAAAGGCTAGTTTTTTACTTTATTATCATGTTGTGTGCATCCTCTTGAAATGATGGGCCGGACACTGTTATGTTGTTAATTCTTTAACTGTTATGAAAGAAAGTCAGCAGATCATGTAGTTATGTCTGAGCTGACTGCCTTAATATTTGACAGACAATGGACACTGAAGGTCATAAATCCATTTTATCAACAGCCTGTAGGTTGTTACCAAGGCTTATACCTTTTAAAATCTAGATTTCAGTTTGAATTGTTATCAAATTCATACAACTTGGCAAATATATTTGGCAAACATCCCAAGTTCCCAACTACTAGAAAAAACTAGCATTTGGAATTTTTTTATAAATTTTAAAATTACCCCAAACTTTTATATTTTGTACGGAACACCCATCATTTGTTAAGTCCAAATAATATTTATCTACCTCCTCCGGAAAAGTTTGACTTATAAGTTGAGGGACAAGATTGAGAAAAAAGAACAACTTGTTTTTAATGAGTTATAATTCCAATTGAATCAGTGACGAGTTTGATTATGCAATTAATGTATTGCTCTCGCCCATATTGTTATTTTGTTGTTGTTCATAGTTATCAATTATGTTATAAGGTTATTTTTAATGGAACATGTTCATTATAAAATTATAATACAAACTTATGGGTATAAATCATATTTTTTTGAAATTGTCAAATATTCTTGGGAAAATTTGTGACCAAACGCATGGTAAAACTTCACCAGAACTTCACTCAAAAATAACTTGCCAAGAATATTTGGAAATTTGTGACTGAACACTAGCTTAATACTTCCTAGGTTTTAATCTATTGTCTCTGCGCATGCAGTAGGCACATTAATAAAGTTTGATTGTTCTTTGGCACGAGAACTTTTAGAAAATGATACAAGGACTGCAGGAATTATCTATTTGGATATCTTTAATTAAAGCAGCACTTCTTACAAATGTCAGGAACCATTTGCCTCTTTGTTATATTTCTGTTAGGGGAATTCCCACATTGCTGGCTGGGTGTGAGAATGACTATGCTTTTGATGTGTCCTGCACCACACTCCCTGCTTGGACATTAACGCATTGCATTCTCTTGTATCTTCAGTTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTGGTAATCTGTCCTTAGTCCTAATCTTTAGTTTCCATCTGTACAACCTTAAGTCACTTTGATAACCAACAGGTTTTCCACATATTAATAATATTATTAAGAATCTTAAGCCCTGAATGTGGTAATGAAATAAAACAATTCTCTACCTTTCTGGCTTTACCATAGCACCTTGTGAACCTGATATTCTTACTCAGGAAGTGAGTGAAATTGATGG</genome_strand>
        <mrna_strand>GCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAG............................................................................................................................................................................................GAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTG.......................................................................................................................................................................GTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATG...................................................................................ATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCG...............................................................................................................................................................................................................................................................................................................................................................AGCTCTGCTTTGAAACAATCTCGTGATCAAATTCGCCTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAAAAGCATCTGCTGTG...............................................................................................................................................................................................GAAGTGAGTGAAATTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740475" ref_strand="+" ref_description="SGN-E740475 [LC21CD02]">
      <seq>ggcttgtctcaatcttactgaagtctatcccgtttcccgcaatctctctccccgccactggtgcttttgtcactctctctgcaaatcatctgttccaattatccattttcaaatgcatgatgctcctctcagtctcactgcttcccaattcatcatcgtcattcgccaccgtagcatttgctttcccaaaagttcccggcggtttcaggcagtccattcgaatcaaggtccatgccttcctaaacaaaccactggaatcgagctccgatcaaccatcggtgattctagacagtctcagggtcctcgaatgggacaaattatgcgattcggtcgctgccttcgccggtacttccttaggcaaagaagctctcaaggaacaactaggttatctgaatcaaacatttgaagagagtcttggactcttagaggaaaccaatgcggctgtggagatgaataagtacggtgccatggtggattttaatggcattgatattgagctggttaaaacggccatacgggttgcacgccatggttttcctgtcagtgggactgaagcattgaatgttgtagcactactgcagtttgtggaaatgctgcaggcaaatgtcaaagctgcagtcaagcaagacgcagaatggtatcagcgttttatgcctctcacagaaatgattatggaactaaccataagcaaatcactagtgaggttcatacaacaactagttgatgaagatggttctgtcaaggattctgcgagctctgctttgaaacaatctcgtgatcaagttcgccttcttgaaaaaaagttataccagttgatggaaaacataatcaggaacggcatggaagaagcatctgctgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94485" stop="90963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94185" g_stop="93812" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93624" i_length="188">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93623" g_stop="93498" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="500" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93497" i_stop="93331" i_length="167">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93163" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="668" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93162" i_stop="93080" i_length="83">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93079" g_stop="92996" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="752" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92995" i_stop="92645" i_length="351">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92644" g_stop="92594" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="803" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92593" i_stop="91321" i_length="1273">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91320" g_stop="91264" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="860" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E740475" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94185" e_stop="93812"/>
          <exon e_start="93623" e_stop="93498"/>
          <exon e_start="93330" e_stop="93163"/>
          <exon e_start="93079" e_stop="92996"/>
          <exon e_start="92644" e_stop="92594"/>
          <exon e_start="91320" e_stop="91264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTGTCTCAATCTTACTGAAGTCTATCCCGTTTCCCGCAATCTCTCTCCCCGCCACTGGTGCTTTTGTCACTCTCTCTGCAAATCATCTGTTCCAATTATCCATTTTCAAATGCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAGGTTAACTCTTCGTGTACTTACCTTTTTTCACTTTTCCTTCTGTTTGATTGAAGAATGAACTAATTACTTTAGCTCAGTGTATGTGAATGTGTGTTTGCATATGCATGTGTATAGTATATGTATAGGCTTGTGTATTTATGTGTATATACTTAAAAATACAGGATTATCAAAGGAATTGTTTGGTGCAGGAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTGGTAGGTCCTCAACTTCGTTTGTTTATCCTGTGGTGTACTGGTTTTGTTTGAAACTTTAGTTTGGTTCTTTGGAAATTGAACAATTTGGGTAAACTCATTGTTGTTCAAGTTCCTGCTTAAATTGCGAGTGGTGCAGAATGATGTTGTCTGTTCCTCTATTGTTGAAGGTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATGGTAATAAAATTCTGGCGACAATGAACTTTTCAGCAATCATATATGGTGCGTTTGTCTCCAATCATTTTCTATTTTTACTGCAGATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCGGTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTCTTTCAAGCTTCTCAGAGGTCATGACACATGTCACTTCCTTGACATTTTCTTCTGCATCTTCTATACACGTGCATTAACTCTACTATTTGCTGTGGTTATATTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTTTTTTCAAGCTTCTCATAGGTCGTAACACAAGTCACTTCCTTGACATTTTCTTCTGCATCTTCTGTACACATGCATTGACTCTACTATTTGCTGTGGTTATATTCGACTTTATGAGTCTTATTAATATTACTTTATGGTTTTAGAGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAGGTAGACTTCATTCTTCTTCCTAATTGACTGTACTTCAGCAAATTTGGTGGTTATTACTTTTCAGAAACTTCTTTCCCTAGAAAATATCTTCAATATAATAATTTGTAATTTTTTATTTGCTGGTGTATATTTATGCTCTTTCCTTCATCTGTTATTTGTCTGTTCATAAGTTTGATAAAATCAAAGGCTAGTTTTTTACTTTATTATCATGTTGTGTGCATCCTCTTGAAATGATGGGCCGGACACTGTTATGTTGTTAATTCTTTAACTGTTATGAAAGAAAGTCAGCAGATCATGTAGTTATGTCTGAGCTGACTGCCTTAATATTTGACAGACAATGGACACTGAAGGTCATAAATCCATTTTATCAACAGCCTGTAGGTTGTTACCAAGGCTTATACCTTTTAAAATCTAGATTTCAGTTTGAATTGTTATCAAATTCATACAACTTGGCAAATATATTTGGCAAACATCCCAAGTTCCCAACTACTAGAAAAAACTAGCATTTGGAATTTTTTTATAAATTTTAAAATTACCCCAAACTTTTATATTTTGTACGGAACACCCATCATTTGTTAAGTCCAAATAATATTTATCTACCTCCTCCGGAAAAGTTTGACTTATAAGTTGAGGGACAAGATTGAGAAAAAAGAACAACTTGTTTTTAATGAGTTATAATTCCAATTGAATCAGTGACGAGTTTGATTATGCAATTAATGTATTGCTCTCGCCCATATTGTTATTTTGTTGTTGTTCATAGTTATCAATTATGTTATAAGGTTATTTTTAATGGAACATGTTCATTATAAAATTATAATACAAACTTATGGGTATAAATCATATTTTTTTGAAATTGTCAAATATTCTTGGGAAAATTTGTGACCAAACGCATGGTAAAACTTCACCAGAACTTCACTCAAAAATAACTTGCCAAGAATATTTGGAAATTTGTGACTGAACACTAGCTTAATACTTCCTAGGTTTTAATCTATTGTCTCTGCGCATGCAGTAGGCACATTAATAAAGTTTGATTGTTCTTTGGCACGAGAACTTTTAGAAAATGATACAAGGACTGCAGGAATTATCTATTTGGATATCTTTAATTAAAGCAGCACTTCTTACAAATGTCAGGAACCATTTGCCTCTTTGTTATATTTCTGTTAGGGGAATTCCCACATTGCTGGCTGGGTGTGAGAATGACTATGCTTTTGATGTGTCCTGCACCACACTCCCTGCTTGGACATTAACGCATTGCATTCTCTTGTATCTTCAGTTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTG</genome_strand>
        <mrna_strand>GGCTTGTCTCAATCTTACTGAAGTCTATCCCGTTTCCCGCAATCTCTCTCCCCGCCACTGGTGCTTTTGTCACTCTCTCTGCAAATCATCTGTTCCAATTATCCATTTTCAAATGCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAG............................................................................................................................................................................................GAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTG.......................................................................................................................................................................GTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATG...................................................................................ATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCG...............................................................................................................................................................................................................................................................................................................................................................AGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737824" ref_strand="+" ref_description="SGN-E737824 [LC11BD10]">
      <seq>tcctctcagtctcactgcttcccaattcatcatcgtcattcgccaccgtagcatttgctttcccaaaagttcccggcggtttcaggcagtccattcgaatcaaggtccatgccttcctaaacaaaccactggaatcgagctccgatcaaccatcggtgattctagacagtctcagggtcctcgaatgggacaaattatgcgattcggtcgctgccttcgccggtacttccttaggcaaagaagctctcaaggaacaactaggttatctgaatcaaacatttgaagagagtcttggactcttagaggaaaccaatgcggctgtggagatgaataagtacggtgccatggtggattttaatggcattgatattgagctggttaaaacggccatacgggttgcacgccatggttttcctgtcagtgggactgaagcattgaatgttgtagcactactgcagtttgtggaaatgctgcaggcaaatgtcaaagctgcagtcaagcaagacgcagaatggtatcagcgttttatgcctctcacagaaatgattatggaactaaccataagcaaatcactagtgaggttcatacaacaactagttgatgaagatggttctgtcaaggattctgcgagctctgctttgaaaacaatctcgtgatcaagttcgccttcttgaaagaaaagttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94362" stop="92289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94062" g_stop="93812" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93624" i_length="188">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93623" g_stop="93498" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="377" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93497" i_stop="93331" i_length="167">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93163" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="545" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93162" i_stop="93080" i_length="83">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93079" g_stop="92996" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="629" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92995" i_stop="92645" i_length="351">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92644" g_stop="92594" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="681" r_length="52" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E737824" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94062" e_stop="93812"/>
          <exon e_start="93623" e_stop="93498"/>
          <exon e_start="93330" e_stop="93163"/>
          <exon e_start="93079" e_stop="92996"/>
          <exon e_start="92644" e_stop="92594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAGGTTAACTCTTCGTGTACTTACCTTTTTTCACTTTTCCTTCTGTTTGATTGAAGAATGAACTAATTACTTTAGCTCAGTGTATGTGAATGTGTGTTTGCATATGCATGTGTATAGTATATGTATAGGCTTGTGTATTTATGTGTATATACTTAAAAATACAGGATTATCAAAGGAATTGTTTGGTGCAGGAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTGGTAGGTCCTCAACTTCGTTTGTTTATCCTGTGGTGTACTGGTTTTGTTTGAAACTTTAGTTTGGTTCTTTGGAAATTGAACAATTTGGGTAAACTCATTGTTGTTCAAGTTCCTGCTTAAATTGCGAGTGGTGCAGAATGATGTTGTCTGTTCCTCTATTGTTGAAGGTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATGGTAATAAAATTCTGGCGACAATGAACTTTTCAGCAATCATATATGGTGCGTTTGTCTCCAATCATTTTCTATTTTTACTGCAGATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCGGTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTCTTTCAAGCTTCTCAGAGGTCATGACACATGTCACTTCCTTGACATTTTCTTCTGCATCTTCTATACACGTGCATTAACTCTACTATTTGCTGTGGTTATATTCTGTCCTCATTTTTTATGAACAGCTTTGATATTTCTGCAGTTCTAACTTTTTTTTTCAAGCTTCTCATAGGTCGTAACACAAGTCACTTCCTTGACATTTTCTTCTGCATCTTCTGTACACATGCATTGACTCTACTATTTGCTGTGGTTATATTCGACTTTATGAGTCTTATTAATATTACTTTATGGTTTTAGAGCTCTGCTTTG-AAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAG</genome_strand>
        <mrna_strand>TCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAG............................................................................................................................................................................................GAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTG.......................................................................................................................................................................GTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATG...................................................................................ATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCG...............................................................................................................................................................................................................................................................................................................................................................AGCTCTGCTTTGAAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94166" stop="95061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94466" g_stop="94787" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94466" e_stop="94787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACCTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGATACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94166" stop="95061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94466" g_stop="94771" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94466" e_stop="94771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACCTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGATACAGAATTATACACTTTTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94167" stop="95212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94467" g_stop="94913" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94467" e_stop="94913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACCTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGATACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGAGAGCGAGATTTTTGGGAGAGAGACG-TTGGGAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAA</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206794" ref_strand="+" ref_description="SGN-E206794 [cLEC-31-N6]">
      <seq>taattaaacttgtcatccaacaaaaacagcaagtttttcaattcatccaatccttgcttccaaagttcccaatttaatccaaattcccaaatttgaggatctatttttctcatctttcatctgtttcaatctgagactctcacaggccaaagcgttatgggagatgaaaatggtttacctaattcatctccgaaccattcaattttcaggtacaattcgccactggttcaggtttgtttgattggattagtatgtttttgttgtccagggatgttcaatgcgctctctggaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="98534" stop="99429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98834" g_stop="99129" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E206794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98834" e_stop="99129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAAACTTGTCATCCAACAAAAACAGCAAGTTTTTCAATTCATCCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGG</genome_strand>
        <mrna_strand>TAATTAAACTTGTCATCCAACAAAAACAGCAAGTTTTTCAATTCATCCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200249" ref_strand="+" ref_description="SGN-E200249 [cLEC-12-C23]">
      <seq>aaaacagcaagtttttcaattcatgcaatccttgcttccaaagttcccaatttaatccaaattcccaaatttgaggatctatttttctcatctttcatctgtttcaatctgagactctcacaggccaaagcgttatgggagatgaaaatggtttacctaattcatctccgaaccattcaattttcaggtacaattcgccactggttcaagtttgtttgattggattagtatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="98556" stop="99392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98856" g_stop="99092" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E200249" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98856" e_stop="99092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGCAAGTTTTTCAATTCATCCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTT</genome_strand>
        <mrna_strand>AAAACAGCAAGTTTTTCAATTCATGCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAAGTTTGTTTGATTGGATTAGTATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313992" ref_strand="+" ref_description="SGN-E313992 [cTOA-19-D4]">
      <seq>tttaatccaaattcccaaatttgaggatctatttttctcatctttcatctgtttcaatctgagactctcacaggccaaagcgttatgggagatgaaaatggtttacctaattcatctccgaaccattcaattttcaggtacaattcgccactggttcaggtttgtttgattggattagtatgtttttgttgtccagggatgttcaatgcgctctctggaatgggtggtggtggtcaagtcgaccacacggcgtctaacaacgccaacaccgcactctacacagctttcactatttttgggatattgggtggtggaatttacaacattttaggtccaaaaaagactctgtttattggatgacaacaaagatgaagagggagcaactaaggaagcctccattacttcaaaccgcgacattagtactacagtagactaccccaataaggaataaggaatagtttacagaatttataatttagtcattactaccatagtagagtttaaagaactgttctgtaaattgtggactatcaaccacagtgaaatttctttgctaatgtttatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="98606" stop="100908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98906" g_stop="99260" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99261" i_stop="100395" i_length="1135">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100396" g_stop="100607" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="567" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="577"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E313992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98906" e_stop="99260"/>
          <exon e_start="100396" e_stop="100607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTGGGTGTTCAACTTATATATTGTATGCGGGTTCTTTCCTTTACTACAATCACCACAAGCATCAAGTGTTTGTGGTAGTGGCCGGCGGTCTCCTCGGTGTTGGCGCCGGCCTACTCTGGGCTGCCCAGGGAGCTATTATGACATCTTACCCGCCACATGACAGGAAGGGTACTTATATCTCTATATTTTGGAGTATTTTCAACATGGGTGGTGTTATTGGTGGTCTTATACCGTTTGTATCCAACTATAATAGAACTACCGCGGCCTCTGTTAATGATGGTACATATATTGGATTTATGTTCTTCATGGCTATCGGAACGGTTCTTTCATTAGCGATTTTGCATCCTAGTAAGGTCATTAGAAACGATGGTTCTTCGTGTACTAATATCAAGTACTCGAGTGTGTCTGTGGAATTAATTCAAATTCTCAAACTGTTCGGCAACTGGAAGATGTTGTTGATGGTACCAGCCTCGTGGGCTAGTAACTTCTTTTATACTTACCAGTTCAATAATGTGAATGGGGTTTTGTTCAATTTGAGGACAAGGGGTTTGAACAATGTGTTCTATTGGGGTGCACAGATGATTGGTTCGGTGTTCATCGGGTCCATAATGGACTACAGTTTTAAGAGCAGAAAGGCTAGGGGATTGGTTGGTATTATTGTTGTTGGCCTGCTTTCAACAGCAATTTGGGGCGGAGGGTTCGCCAAACAGCTTACATATTCCCACGATGATGTACCTCATCGCATAGTGTTACTGGATTTCAAGGATGGTTCTAAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAGGTAAATTTTCGATTTCAATTTATGCTTATGAGATACAGAATTGATTATCAGTATTGGTTAAAATTGGATTTGTTTATCTGTATTCACAGATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTA</genome_strand>
        <mrna_strand>TTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313993" ref_strand="+" ref_description="SGN-E313993 [cTOA-19-D6]">
      <seq>tttaatccacattcccaaatttgacgatctatttttctcatctttcatctgtttcaatctgagactctcacaggccaaagcgttatgggagatgaaaatggtttacctaattcatctccgaaccattcaattttcaggtacaattccccactggttcaggtttgcttgatcggattagtatgtttttgctggccacggatgttcaatgcgctctctggaatgggtggtggtggtcaaggcgaccacacagggtctaacaacgccaactccgttctctacacaactttgactatctttgggatattgggtggtggactttacaacatttgatgtccaaccatgactctgattattgcatgacgacacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="98606" stop="99564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98906" g_stop="99275" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E313993" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98906" e_stop="99275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTGGGTGTTCAACTTATA</genome_strand>
        <mrna_strand>TTTAATCCACATTCCCAAATTTGACGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCCCCACTGGTTCAGGTTTGCTTGATCGGATTAGTATGTTTTTGCTGGCCACGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGGCGACCACACAGGGTCTAACAACGCCAACTCCGTTCTCTACACAACTTTGACTATCTTTGGGATATTGGGTGGTGGACTTTACAACATTTGATGTCCAACCATGACTCTGATTATTGCATG-ACGACACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353889" ref_strand="+" ref_description="SGN-E353889 [cTOS-10-O23]">
      <seq>aaatttgcaggtccattcttgttgtattttagttatggattactcgatgccatgtttcagagcatggtctattgggttataggagccttggcagatgattctgaggttctcagcagatatactggcttctataaaggaatacaaagtgcaggtgcagccgttgcttggcaagtggattcacatactgtcccattcatgaaccagcttatcgcgaattgggcattaacaaccattagttttccattactggtagctcttgtagtgttagctgtgaaggatgacaacaaagatgaagagggagcaactaaggaagcctccattacttcaaaccgcgacattagtactacagtagactaccccaataaggaataaggaatagtttacagaatttataatttagtcattactaccatagtagagtttaaagaactgttctgtaaattgtggactatcaaccacagtgaaatttctttgctaatgtttatttaatcgtcttcattctccagtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="99731" stop="100929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100031" g_stop="100146" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100147" i_stop="100235" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100236" g_stop="100631" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="512" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E353889" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100031" e_stop="100146"/>
          <exon e_start="100236" e_stop="100631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAGGTAAATTTTCGATTTCAATTTATGCTTATGAGATACAGAATTGATTATCAGTATTGGTTAAAATTGGATTTGTTTATCTGTATTCACAGATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTAATCGTCTTCATTCTCCAGTAAATT</genome_strand>
        <mrna_strand>AAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAG.........................................................................................ATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTAATCGTCTTCATTCTCCAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354874" ref_strand="+" ref_description="SGN-E354874 [cTOS-19-H2]">
      <seq>aaatttgcaggtccattcttgttgtattttagttatggattactcgatgccatgtttcagagcatggtctattgggttataggagccttggcagatgattctgaggttctcagcagatatactggcttctataaaggaatacaaagtgcaggtgcagccgttgcttggcaagtggattcacatactgtcccattcatgaaccagcttatcgcgaattgggcattaacaaccattagttttccattactggtagctcttgtagtgttagctgtgaaggatgacaacaaagatgaagagggagcaactaaggaagcctccattacttcaaaccgcgacattagtactacagtagactaccccaataaggaataaggaatagtttacagaatttataatttagtcattactaccatagtagagtttaaagaactgttctgtaaattgtggactatcaaccacagtgaaatttctttgctaatgtttatttaatcgtcttcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="99731" stop="100922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100031" g_stop="100146" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100147" i_stop="100235" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100236" g_stop="100622" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="503" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E354874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100031" e_stop="100146"/>
          <exon e_start="100236" e_stop="100622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAGGTAAATTTTCGATTTCAATTTATGCTTATGAGATACAGAATTGATTATCAGTATTGGTTAAAATTGGATTTGTTTATCTGTATTCACAGATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTAATCGTCTTCATTCTC</genome_strand>
        <mrna_strand>AAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAG.........................................................................................ATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTAATCGTCTTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547640" ref_strand="+" ref_description="SGN-E547640 [TUS-71-K1](-)">
      <seq>gaaaaagagatactttacctttgatcatcggaaatccccaaaatttcaattctcgggttttcgatttcttcaactaggttttctgttaaaagagaaaggcgagcttttcttctatattctaagaaaggctcgccggaaaaaaaatttaaacaaatatagtatccatggaatttcttagaatttctgcttttcaatctatcgtcgtgttcctgctcatctctgtcatctacttcccggtcaccgtccgttcagatgaaatcatcccgcttcttttgccttccgaacaagtgaatcaagacatttgccctacgacgccgtctccatcggaatcctgcactattaattgcttccgacccgacccggtctgcggtgttaacggtgtgacgtactggtgtggttgccccgacgcacattgtgctggtgtgcgtgttgtgaaatcagggatctgtgaggtgggaaacggaggttctgctccggtcacgggtcaagcgctattgttgattcacattgtttggcttgtgttacttggtttcgtcggactgtttgggctgctatgatcgatcaggtttcgttgattgcttgatttagggttagacttgataggatgattttttgtataacatacctgtaacttatgtatgtatgaggggacatatacggctagcatgatttcaactgtgtcccttgtttttcttttgttcgattaatacaattttaggagatttagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106807" stop="108133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107106" g_stop="107833" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107834" i_stop="107951" i_length="118">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107952" g_stop="107961" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="739" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E547640" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107106" e_stop="107833"/>
          <exon e_start="107952" e_stop="107961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTATCTTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTGTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCGTCGGAATCCTGCCCTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTGTGAGGTGGGAAACGGAGGTTCTGCTCCGGTTACGGGTCAAGCGCTATTGTTGATTCACATTGTTTGGCTTGTGTTACTTGGTTTCGTCGGGCTGTTTGGGCTGCTATGATCGATCAGGTTTCGTTGATTGCTTGATTTAGGGTTAGACTTGATAGGATGATTTTTTTTGTATAACATACCTGTAACTTCTGTATGTATGAGGGGA-ATATACGGCTAG-ATGATTTCAACTGTGT-CCTTGTTTTTCTTTTGTTCGATTAATACAATTTTAGGAGATTTAGATTTTTCTCATCCTTGTTTCTTTTATCTTTGAAATTTTCGTCGATAATTCTTTTACAGAGCCTGAAATGAATGTGTGATGTATATAAGAGTTGATATTGGAATGAAATTGGTCCCAACAGAGAAACAAAG</genome_strand>
        <mrna_strand>GAAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAATCTATCGTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTTTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCATCGGAATCCTGCACTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTGTGAGGTGGGAAACGGAGGTTCTGCTCCGGTCACGGGTCAAGCGCTATTGTTGATTCACATTGTTTGGCTTGTGTTACTTGGTTTCGTCGGACTGTTTGGGCTGCTATGATCGATCAGGTTTCGTTGATTGCTTGATTTAGGGTTAGACTTGATAGGATGA--TTTTTTGTATAACATACCTGTAACTTATGTATGTATGAGGGGACATATACGGCTAGCATGATTTCAACTGTGTCCCTTGTTTTTCTTTTGTTCGATTAATACAATTTTAGGAGATTTAGAT......................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360939" ref_strand="+" ref_description="SGN-E360939 [cLPP-13-G18]">
      <seq>gaaaaagagatactttacctttgatcatcggaaatccccaaaatttcaattctcgggttttcgatttcttcaactaggttttctgttaaaagagaaaggcgagcttttcttctatattctaagaaaggctcgccggaaaaaaaatttaaacaaatatagtatccatggaatttcttagaatttctgcttttcaatctatcgtcgtgttcctgctcatctctgtcatctacttcccggtcaccgtccgttcagatgaaatcatcccgcttcttttgccttccgaacaagtgaatcaagacatttgccctacgacgccgtctccatcggaatcctgcactattaattgcttccgacccgacccggtctgcggtgttaacggtgtgacgtactggtgtggttgccccgacgcacattgtgctggtgtgcgtgttgtgaaatcagggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106807" stop="107853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107106" g_stop="107553" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E360939" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107106" e_stop="107553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTATCTTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTGTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCGTCGGAATCCTGCCCTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTG</genome_strand>
        <mrna_strand>GAAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAATCTATCGTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTTTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCATCGGAATCCTGCACTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364225" ref_strand="+" ref_description="SGN-E364225 [cLPP-16-N20]">
      <seq>aaaaagagatactttacctttgatcatcggaaatccccaaaatttcaattctcgggttttcgatttcttcaactaggttttctgttaaaagagaaaggcgagcttttcttctatattctaagaaaggctcgccggaaaaaaaatttaaacaaatatagtatccatggaatttcttagaatttctgcttttcaatctatcgtcgtgttcctgctcatctctgtcatctacttcccggtcaccgtccgttcagatgaaatcatcccgctttttttgccttccgaacaagtgaatcaagacatttgccctacgacgccgtctccatcggaatcctgcactattaattgctttcgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106807" stop="107760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107107" g_stop="107460" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E364225" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107107" e_stop="107460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTATCTTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTGTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCGTCGGAATCCTGCCCTATTAATTGCTTCCGACC</genome_strand>
        <mrna_strand>AAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAATCTATCGTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTTTTTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCATCGGAATCCTGCACTATTAATTGCTTTCGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360848" ref_strand="+" ref_description="SGN-E360848 [cLPP-7-H6]">
      <seq>aaagagatactttacctttgatcatcggaaatccccaaaatttcaattctcgggttttcgatttcttcaactaggttttctgttaaaagagaaaggcgagcttttcttctatattctaagaaaggctcgccggaaaaaaaatttaaacaaatatagtatccatggaatttcttagaatttctgcttttcaatctatcgtcgtgttcctgctcatctctgtcatctacttcccggtcaccgtccgttcagatgaaatcatcccgcttcttttgccttccgaacaagtgaatcaagacatttgccctacgacgccgtctccatcggaatcctgcactattaattgcttccgacccgacccggtctgcggtgttaacggtgtgacgtactggtgtggttgccccgacgcacattgtgctggtgtgcgtgttgtgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106809" stop="107844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107109" g_stop="107544" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E360848" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107109" e_stop="107544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTATCTTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTGTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCGTCGGAATCCTGCCCTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATC</genome_strand>
        <mrna_strand>AAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAATCTATCGTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTTTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCATCGGAATCCTGCACTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360760" ref_strand="+" ref_description="SGN-E360760 [cLPP-7-M23]">
      <seq>tttacctttgatcatcggaaatccccaaaatttcaattctcgggttttcgatttcttcaactaggttttctgttaaaagagaaaggcgagcttttcttctatattctaagaaaggctcgccggaaaaaaaatttaaacaaatatagtatccatggaattccttaaaatttctgcttttcaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106819" stop="107603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107119" g_stop="107303" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E360760" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107119" e_stop="107303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTA</genome_strand>
        <mrna_strand>TTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTCCTTAAAATTTCTGCTTTTCAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359836" ref_strand="+" ref_description="SGN-E359836 [cLPP-9-G2]">
      <seq>acctttgatcatcggaaatccccaaaatttcaattctcgggttttcgatttcttcaactaggttttctgttaaaagagaaaggcgaagcttttcttctatattctaagaaaggctcgccggaaaaaaaatttaaacaaatatagtatccatggaatttcttagaatttctgcttttcaatctatcgtcgtgttcctgctcatctctgtcatctacttcccggtcaccgtccgttcagatgaaatcatcccgcttcttttgccttccgaacaagtgaatcaagacatttgccctacgacgccgtctccatcggaatcctgcactattaattgcttccgacccgacccggtctgcggtgttaacggtgtgacgtactggtgtggttgccccgacgcacattgtgctggtgtgcgtgttgtgaaatcagggatctgtgaggtgggaaacggaggttctgctccggtcacgggtcaagcgctattgttgattcacattgtttggcttgtgttacttggtttcgtcggactgtttgggctgctatgatcgatcaggtttcgttgattgcttgatttagggttagacttgataggatgattttttgtataacatacctgtaacttatgtatgtatgaggggaatatacggctagatgatttcaactgtgtccttgtttttcttttgttcgataatacaattttagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106822" stop="108124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107122" g_stop="107824" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E359836" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107122" e_stop="107824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCG-AGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTATCTTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTGTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCGTCGGAATCCTGCCCTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTGTGAGGTGGGAAACGGAGGTTCTGCTCCGGTTACGGGTCAAGCGCTATTGTTGATTCACATTGTTTGGCTTGTGTTACTTGGTTTCGTCGGGCTGTTTGGGCTGCTATGATCGATCAGGTTTCGTTGATTGCTTGATTTAGGGTTAGACTTGATAGGATGATTTTTTTTGTATAACATACCTGTAACTTCTGTATGTATGAGGGGAATATACGGCTAGATGATTTCAACTGTGTCCTTGTTTTTCTTTTGTTCGATTAATACAATTTTAGGA</genome_strand>
        <mrna_strand>ACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAATCTATCGTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTTTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCATCGGAATCCTGCACTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTGTGAGGTGGGAAACGGAGGTTCTGCTCCGGTCACGGGTCAAGCGCTATTGTTGATTCACATTGTTTGGCTTGTGTTACTTGGTTTCGTCGGACTGTTTGGGCTGCTATGATCGATCAGGTTTCGTTGATTGCTTGATTTAGGGTTAGACTTGATAGGATGA--TTTTTTGTATAACATACCTGTAACTTATGTATGTATGAGGGGAATATACGGCTAGATGATTTCAACTGTGTCCTTGTTTTTCTTTTGTTCGA-TAATACAATTTTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331245" ref_strand="+" ref_description="SGN-E331245 [cTOD-6-M16]">
      <seq>ttttttttttttttttttttttcaaagatgatcgtctcatggtattatatttattcaaaaaagaatgagttcatttcctggagcacaaaacaggttattgaacaatgaaacttttctgtcattagtttgagtctccagaaaaacgtatgtaaaaaaagcatataaaagtggcgactgaaaagtacatgtttcccacacgctttaaagttctccaaacaataaacctctggaaatgcatcatccttcaaaatttgaaggagagtcgatcagtataatgacccctaactaccactttttccatttcaattttttactaccacttttctactttccaagaagcctcatccagaactcatcagccgttgtcagaaaaaagagttgtcaccaaaatgatgcatgcaagtcagagctctacgccaaaagaataggcactctttatcattgccaaattatctactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="+" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70891" stop="110159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109400" g_stop="109859" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="+" ref_id="SGN-E331245" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109400" e_stop="109859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTTCTTTAACTGAGCATTCAAAGATGATCGTCTCATGGTATTATATTTATTCAAAAAAGAATGAGTTCATTTCCTGGAGCACAAAACAGGTTATTGAACAATGAAACTTTTCTGTCATTAGTTTGAGTCTCCAGAAAAACGTATGTAAAAAAAGCATATAAAAGTGGCGACTGAAAAGTACATGTTTCCCACACGCTTTAAAGTTCTCCAAACAATAAACCTCTGGAAATGCATCATCCTTCAAAATTTGAAGGAGAGTCGATCAGTATAATGACCCCTAACTACCACTTTTTCCATTTCAATTTTTTACTACCACTTTTCTACTTTCCAAGAAGCCTCATCCAGAACTCAGCAGCCGTTGTCAGAAAAAAGAGTTGTCACCAAAATGATGCATGCAAGTCAGAGCTCTACGCCAAAAGAATAGGCACTCTTTATCATTGCCAAATTATCTACTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTCAAAGATGATCGTCTCATGGTATTATATTTATTCAAAAAAGAATGAGTTCATTTCCTGGAGCACAAAACAGGTTATTGAACAATGAAACTTTTCTGTCATTAGTTTGAGTCTCCAGAAAAACGTATGTAAAAAAAGCATATAAAAGTGGCGACTGAAAAGTACATGTTTCCCACACGCTTTAAAGTTCTCCAAACAATAAACCTCTGGAAATGCATCATCCTTCAAAATTTGAAGGAGAGTCGATCAGTATAATGACCCCTAACTACCACTTTTTCCATTTCAATTTTTTACTACCACTTTTCTACTTTCCAAGAAGCCTCATCCAGAACTCATCAGCCGTTGTCAGAAAAAAGAGTTGTCACCAAAATGATGCATGCAAGTCAGAGCTCTACGCCAAAAGAATAGGCACTCTTTATCATTGCCAAATTATCTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375304" ref_strand="+" ref_description="SGN-E375304 [TUS-15-D8](-)">
      <seq>ttttctcgctgcaaagccaaaaaaaggatgactgaatttttttagctttgtgagtaagtagccttgcatgcatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtaaagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttttggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttttggagactcaaactaatgacagaaaagtttcattgttcaataacctgttttgtgctccaggaaatgaactcattcttttttgaataaatataataccatgagacgatcatctttgaatgctcagtttaaggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110240" stop="109105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109940" g_stop="109407" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="561"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E375304" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109940" e_stop="109407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATATAATACCATGAGACGATCATCTTTGAATGCTCAGTTAAAG</genome_strand>
        <mrna_strand>TTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTTTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAAAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTTTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTTTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATATAATACCATGAGACGATCATCTTTGAATGCTCAGTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313878" ref_strand="-" ref_description="SGN-E313878 [cTOA-17-N3]">
      <seq>atcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaaggatgactgaattttcttagctttgtgagtaagtagccttgcatgcatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttctggagactcaaactaatgacagaaaagtttcattgttcaataacctgttttgtgctccaggaaatgaactcattcttttttgaataaatataataccatgagacgatcatctttgaatgctcaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110261" stop="109114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109961" g_stop="109414" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="565"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E313878" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313878" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109961" e_stop="109414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATATAATACCATGAGACGATCATCTTTGAATGCTCA</genome_strand>
        <mrna_strand>ATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATATAATACCATGAGACGATCATCTTTGAATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354319" ref_strand="+" ref_description="SGN-E354319 [cTOS-16-N4]">
      <seq>cctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttctggagactcaaactaatgacagaaaagtttcattgttcaataacctgttttgtgctccaggaaatgaactcattcttttttgaataaatataataccatgagacgatcatctttgaatgctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110128" stop="109114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109828" g_stop="109414" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="428"/>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E354319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109828" e_stop="109414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATATAATACCATGAGACGATCATCTTTGAATGCTCA</genome_strand>
        <mrna_strand>CCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATATAATACCATGAGACGATCATCTTTGAATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378860" ref_strand="+" ref_description="SGN-E378860 [TUS-1-O14](-)">
      <seq>aagttgaccaaaaacaccaggcagagtgattcatctgcagtaagcggcgatgacagctctcttactgcaaattctgctgatgatcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaaaggatgactgaattttcttagctttgtgagtaagtagccttgcatgcatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttctggagactcaaactaatgacagaaaagtttcattgttcaataacctgttttgtgctgcaggaaatgaactcattcttttttgaataagtataataccatgagacgatcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110343" stop="109124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110043" g_stop="109424" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E378860" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110043" e_stop="109424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCC-AAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATATAATACCATGAGACGATCATCTT</genome_strand>
        <mrna_strand>AAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTGCAGGAAATGAACTCATTCTTTTTTGAATAAGTATAATACCATGAGACGATCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349774" ref_strand="+" ref_description="SGN-E349774 [cTOS-3-H17]">
      <seq>gacctctcaatccaagttgaccaaaaacaccaggcagagtgattcatctgcagtaagcggcgatgacagctctcttactgcaaattctgctgatgatcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaaggatgactgaattttcttagctttgtgagtaagtagccttgcatgcatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttctggagactcaaactaatgacagaaaagtttcattgttcaataacctgttttgtgctccaggaaatgaactcattcttttttgaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110356" stop="109144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110056" g_stop="109446" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E349774" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110056" e_stop="109446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATAT</genome_strand>
        <mrna_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349775" ref_strand="+" ref_description="SGN-E349775 [cTOS-3-J11]">
      <seq>gacctctcaatccaagttgaccaaaaacaccaggcagagtgattcatctgcagtaagcggcgatgacagctctcttactgcaaattctgctgatgatcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaaggatgactgaattttcttagctttgtgagtaagtagccttgcatgcatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttctggagactcaaactaatgacagaaaagtttcattgttcaataacctgttttgtgctccaggaaatgaactcattcttttttgaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110356" stop="109144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110056" g_stop="109446" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E349775" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110056" e_stop="109446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATAT</genome_strand>
        <mrna_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349776" ref_strand="+" ref_description="SGN-E349776 [cTOS-3-J19]">
      <seq>gacctctcaatccaagttgaccaaaaacaccaggcagagtgattcatctgcagtaagcggcgatgacagctctcttactgcaaattctgctgatgatcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaaggatgactgaattttcttagctttgtgagtaagtagccttgcatgcatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttctggagactcaaactaatgacagaaaagtttcattgttcaataacctgttttgtgctccaggaaatgaactcattcttttttgaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110356" stop="109144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110056" g_stop="109446" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E349776" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110056" e_stop="109446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATAT</genome_strand>
        <mrna_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349815" ref_strand="+" ref_description="SGN-E349815 [cTOS-3-G15]">
      <seq>gacctctcaatccaagttgaccaaaaacaccaggcagagtgattcatctgcagtaagcggcgatgacagctctcttactgcaaattctgctgatgatcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaaggatgactgaattttcttagctttgtgagtaagtagccttgcatgcatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttctggagactcaaactaatgacagaaaagtttcattgttcaataacctgttttgtgctccaggaaatgaactcattcttttttgaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110356" stop="109144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110056" g_stop="109446" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E349815" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110056" e_stop="109446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATAT</genome_strand>
        <mrna_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349711" ref_strand="+" ref_description="SGN-E349711 [cTOS-3-F16]">
      <seq>gacctctcaatccaagttgaccaaaaacaccaggcagagtgattcatctgcagtaagcggcgatgacagctctcttactgcaaattctgctgatgatcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaaggatgactgaattttcttagctttgtgagtaagtagccttgcatgcatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactcttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctttttttacatacgtttttctggagactcaaactaatgacagaaaagtttcattgttcaataacctgatttgtgctccaggaaatgaaactcattcttttttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110356" stop="109152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110056" g_stop="109452" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E349711" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110056" e_stop="109452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATG-AACTCATTCTTTTTTGAAT</genome_strand>
        <mrna_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGATTTGTGCTCCAGGAAATGAAACTCATTCTTTTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309723" ref_strand="+" ref_description="SGN-E309723 [cLEY-26-B3]">
      <seq>ctcgtgccgaattcggcacgaggaaatgcttctgatcctgctagcatgatgtctcaagctcttgccgtttataaaaacgtagtgagcaagaaccttggcactcagcttcctgtgacctctcaatccaagttgaccaaaaacaccaggcagagtgattcatctgcagtaagcggcgatgacagctctcttactgcaaattctgctgatgatcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaaggatgactgaattttcttagctttgtgagtaagtagccttgcatgccatcgaattcctgagtagataatttggcaatgataaagagtgcctattcttttggcgtagagctctgacttgcatgcatcattttggtgacaactctttttttctgacaacggctgctgagttctggatgaggcttcttggaaagtagaaaagtggtagtaaaaaattgaaatggaaaaagtggtagttaggggtcattatactgatcgactctccttcaaattttgaaggatgatgcatttccagaggtttattgtttggagaactttaaagcgtgtgggaaacatgtacttttcagtcgccacttttatatgctgtttttacatacgtttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110446" stop="109236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110146" g_stop="109536" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="636" r_length="613" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E309723" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110146" e_stop="109536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCTTCTGATCCTGCTAGCATGATGTCTCAAGCTCTTGCCGTTTATAAAAACGTAGTGAGCAAGAACCTTGGCACTCAGCTTCCTGTGACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATG-CATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTC-TTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCT</genome_strand>
        <mrna_strand>AAATGCTTCTGATCCTGCTAGCATGATGTCTCAAGCTCTTGCCGTTTATAAAAACGTAGTGAGCAAGAACCTTGGCACTCAGCTTCCTGTGACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTGTTTTTACATACGTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356511" ref_strand="+" ref_description="SGN-E356511 [cTOS-21-E15]">
      <seq>gacctctcaatccaagttgaccaaaaacaccaggcagagtgattcatctgcagtaagcggcgatgacagctctcttactgcaaattctgctgatgatcatcatctgagtgatcccattttctcgctgcaaagccaaaaaaggatgactgaatttttctagctttgtgagtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0025K18-AirCu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0025K18.1" temp_strand="-" temp_description="C03HBa0025K18.1  AC238437.1 htgs_phase:2 submitted_to_sgn_as:gi|260903610|gb|AC238437.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0025k18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="110356" stop="109582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110056" g_stop="109882" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0025K18.1" gen_strand="-" ref_id="SGN-E356511" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0025K18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110056" e_stop="109882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGT</genome_strand>
        <mrna_strand>GACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCC-AAAAAAGGATGACTGAATTTTTCTAGCTTTGTGAGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>116</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="29843" PGL_stop="29383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29843" e_stop="29383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="29843" e_stop="29383" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29843" stop="29383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAACGATTCAAAAAAAAAAGAATTATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCATGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAACAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAATTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTAAAGTTTGAACATCGATTAAGGTATGGGTTTTCTTCTCTCTTGAATCCTTTCCCA</gDNA_template>
            <first_frame> C  N  D  S  K  K  K  E  L  Y  K  *  E  *  I  G  I  *  G  H  N  C  P  F  M  F  *  M  N  K  *  I  N  K  *  I  N  K  T  D  L  Y  L  F  I  L  N  V  I  *  L  I  L  E  L  V  S  *  S  K  *  S  S  L  S  H  A  S  *  L  P  L  S  R  S  P  S  S  S  H  Y  F  C  Q  N  I  N  S  F  H  A  *  R  T  N  K  N  F  *  A  K  E  K  V  I  K  T  S  R  L  R  E  V  C  R  E  R  C  T  L  K  *  I  G  S  G  L  E  E  F  S  G  Q  Q  H  *  S  L  N  I  D  *  G  M  G  F  L  L  S  *  I  L  S   </first_frame>
            <second_frame>  V  T  I  Q  K  K  K  N  Y  I  N  K  N  K  *  V  F  K  G  I  I  V  L  S  C  F  K  *  I  N  K  *  I  S  K  *  I  K  Q  I  C  I  Y  L  F  *  M  L  F  D  *  F  L  N  *  S  P  N  P  N  S  P  L  S  L  T  L  L  N  S  L  S  H  V  L  H  L  P  H  I  I  S  A  K  T  S  T  V  F  M  L  E  E  L  T  K  I  F  K  Q  K  K  K  *  S  K  R  Q  G  *  E  R  F  V  E  R  G  V  R  *  S  E  L  G  V  V  W  R  S  F  P  G  S  N  I  K  V  *  T  S  I  K  V  W  V  F  F  S  L  E  S  F  P  </second_frame>
            <third_frame>   *  R  F  K  K  K  R  I  I  *  I  R  I  N  R  Y  L  R  A  *  L  S  F  H  V  L  N  E  *  I  N  K  *  V  N  K  *  N  R  F  V  F  I  Y  F  K  C  Y  L  T  N  S  *  I  S  L  L  I  Q  I  V  L  S  L  S  R  F  L  T  P  S  L  T  F  S  I  F  L  T  L  F  L  P  K  H  Q  Q  F  S  C  L  K  N  *  Q  K  F  L  S  K  R  K  S  N  Q  N  V  K  A  K  R  G  L  S  R  E  V  Y  V  E  V  N  W  E  W  F  G  G  V  F  R  A  A  T  L  K  F  E  H  R  L  R  Y  G  F  S  S  L  L  N  P  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0025K18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="32368" PGL_stop="39779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32368" e_stop="32628"/>
            <exon e_start="32698" e_stop="32810"/>
            <exon e_start="34659" e_stop="34919"/>
            <exon e_start="35047" e_stop="35151"/>
            <exon e_start="36011" e_stop="36076"/>
            <exon e_start="36204" e_stop="36425"/>
            <exon e_start="37388" e_stop="37942"/>
            <exon e_start="38292" e_stop="38888"/>
            <exon e_start="39092" e_stop="39268"/>
            <exon e_start="39344" e_stop="39779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.406" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.655" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32368" e_stop="32628" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32629" i_stop="32697" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32698" e_stop="32810" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34659" e_stop="34919" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.406">
            <gDNA_intron_boundary i_start="34920" i_stop="35046" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35047" e_stop="35151" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.921">
            <gDNA_intron_boundary i_start="35152" i_stop="36010" i_length="859"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36011" e_stop="36076" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36077" i_stop="36203" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36204" e_stop="36425" e_length="222"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36426" i_stop="37387" i_length="962"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37388" e_stop="37942" e_length="555"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.655">
            <gDNA_intron_boundary i_start="37943" i_stop="38291" i_length="349"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38292" e_stop="38888" e_length="597"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39092" e_stop="39268" e_length="177"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.990">
            <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="39344" e_stop="39779" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32368" stop="32628"/>
              <exon start="32698" stop="32810"/>
              <exon start="34659" stop="34919"/>
              <exon start="35047" stop="35151"/>
              <exon start="36011" stop="36076"/>
              <exon start="36204" stop="36425"/>
              <exon start="37388" stop="37942"/>
              <exon start="38292" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32368" stop="32628"/>
              <exon start="32698" stop="32810"/>
              <exon start="34659" stop="34919"/>
              <exon start="35047" stop="35143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32369" stop="32628"/>
              <exon start="32698" stop="32810"/>
              <exon start="34659" stop="34868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36359" stop="36425"/>
              <exon start="37388" stop="37862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38294" stop="38868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38464" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38500" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38573" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38574" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38574" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38727" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38847" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38856" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38868" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39186" stop="39268"/>
              <exon start="39344" stop="39779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTA : ATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG : GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAG : GTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAG : GTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAG : ATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAG : GCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAG : GAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT : GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG : ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</gDNA_template>
            <first_frame> Q  T  P  K  L  H  P  T  S  L  F  S  L  F  P  F  F  *  N  S  N  L  *  T  V  Y  F  T  I  Q  E  S  L  H  R  *  I  L  Q  I  R  L  R  P  F  W  L  L  L  A  V  T  L  L  S  F  L  T  S  L  W  N  P  V  I  P  A  F  L  A  I  L  L  P  L  D  S  K  S  I  P  S  S  G  I  T  L  :  I  W  W  W  Q  A  L  E  M  T  R  R  Y  L  C  G  G  K  M  D  R  V  W  G  L  Y  H  W  P  A  L  I  V  L  T  I  S  R :   S  L  F  Q  Q  L  T  L  A  A  K  H  P  D  T  Y  V  L  E  V  V  A  K  L  Y  E  Y  G  I  C  S  G  S  V  A  S  N  G  *  K  V  I  P  I  L  L  V  V  Q  C  T  I  V  K  M  S  T  *  L  L  S  V  L  M  G  I  L  Y  F  T  T  L  L  L  V  Q  R  L  L  N  S  R  I  Q  M  R  R :   F  *  E  C  L  I  I  L  R  L  A  G  I  Y  W  *  Q  L  V  M  M  D  L  S  T  C  G  I  Q  L  V  A  A  P  R :   F  L  G  *  S  S  I  L  H  Q  L  L  A  L  V  S  H  Q  Q  T  T  R :   L  L  L  V  L  V  W  I  R  S  C  T  L  L  T  Q  G  Q  E  G  R  H  F  A  F  L  T  R  H  L  F  L  H  W  H  L  L  M  T  D  S  L  W  Q  L  E  Q  V  V  A  G  *  Y  S  M  T  F  V  E  N  H  N  P  *  L  F  Y  V  L  M  E  I  L  R :   L  *  Q  V  Y  A  G  K  E  Q  N  L  *  L  S  M  K  T  I  A  L  Q  K  W  L  S  W  A  V  L  W  R  I  Q  F  *  C  L  T  H  F  L  L  *  C  H  Q  A  *  Q  L  L  *  Q  H  Q  V  R  E  P  L  F  V  Q  V  L  W  T  H  F  L  F  Q  Q  A  L  Q  D  L  H  L  G  Q  Q  V  Y  L  H  P  R  K  H  P  Y  E  V  V  Y  G  K  V  D  L  W  Q  D  Y  M  L  L  V  T  S  R  M  I  W  K  F  F  L  L  L  L  K  F  S  Q  L  H  L  H  L  I  S  C  G  M  I  R  K  V  S  K  R  I  L  I  R  S  H  L  C  Y  F  L  L  L  *  G  F  P  F  Q  L  R  V  A  M  R  I  A  P  Y  L  I  G  N  Q  V  P  Y  P  N  R :   R  M  L  L  L  H  S  C  L  P  L  Q  H  L  L  V  V  M  I  L  P  P  *  L  L  Q  K  L  G  V  V  R  D  Y  R  I  D  Y  L  I  F  G  S  Q  E  I  C  L  P  V  L  Q  S  R  H  L  V  L  L  H  Q  D  L  C  Y  L  D  Y  R  I  I  F  L  Q  L  R  V  S  A  L  *  L  V  L  L  *  V  W  L  I  C  A  *  K  K  I  Q  M  K  K  L  F  *  D  L  Q  N  M  R  V  P  H  P  F  Q  L  E  Q  K  A  L  L  G  R  V  L  L  I  L  L  V  Q  L  Y  P  S  H  E  D  F  P  V  M  L  R  E  *  A  L  H  H  P  S  V  M  E  P  F  L  L  V  L  Q  K  L  R  K  L  E  L  K  Q  G  K  S  F  *  I  A  C  Y  L  G  R  T  R  R  L  L  Q  Q  L  V  L  S  K  Q  *  M :   V  K  L  S  N  L  K  S  P  H  C  L  N  C  S  R  E  V  P  L  H  S  S  C  S  N  V  H  K  K  K  L  F  L  P  F  K  N  P  F  T  R  I  *  G  I  F  T  *  I  S  *  D  N  F  I  C  K  R :   W  K  L  L  V  L  *  N  *  Y  W  K  T  K  Q  S  *  *  K  R  F  N  Y  F  E  G  K  H  S  S  F  D  S  Y  Y  D  Q  T  S  *  K  S  C  H  Y  V  F  F  *  F  *  P  C  T  Q  C  C  F  R  R  F  V  L  T  V  V  *  *  V  A  S  A  E  V  L  L  C  V  Y  L  I  V  G  E  F  G  G  L  F  Y  P  N  I  V  K  E  C  V  M  A  D  Q  *  Q  L  R  V  L  L  W  L  C  T  E  S  W  L  G  Q  F  Q  K  F  N  V  Q  N  Y  R  S  S  N  S  L  *  F  K  K  H  P  S  K  L  E  E </first_frame>
            <second_frame>  K  H  L  N  Y  T  P  L  H  S  S  L  S  F  P  S  S  E  I  Q  I  C  K  L  Y  I  S  Q  S  K  N  L  F  I  D  E  F  Y  R  F  D  *  D  P  F  G  Y  Y  W  R  *  H  C  *  A  F  *  P  H  F  G  T  P  *  S  L  H  S  *  L  Y  S  F  P  W  I  P  S  Q  F  R  Q  V  E  S  H  * :   F  G  G  G  K  R  W  R  *  Q  E  D  I  F  V  E  E  K  W  T  E  F  G  D  C  T  T  G  R  H  *  *  C  *  Q  Y  R   : G  V  Y  F  N  S  *  L  *  Q  Q  S  I  P  I  H  M  F  W  R  *  W  P  S  Y  T  N  M  G  F  A  A  E  A  L  H  Q  M  V  E  R  S  Y  Q  Y  Y  *  W  C  N  V  Q  L  *  R  *  A  L  S  F  Y  Q  S  *  W  E  S  Y  T  S  Q  P  C  F  W  C  K  G  C  *  T  Q  G  S  K  C  A   : G  F  E  S  A  *  L  F  *  D  *  Q  A  F  I  G  D  S  W  *  *  W  I  Y  P  P  V  G  Y  N  W  S  Q  P  Q   : G  F  L  A  K  A  A  F  C  T  N  F  W  H  *  F  L  T  N  K  R  Q   : D  C  C  *  C  W  Y  G  *  E  V  V  H  F  *  L  R  V  K  K  A  D  I  L  H  S  L  R  G  T  F  F  F  T  G  I  Y  *  *  R  I  H  S  G  S  W  N  K  *  W  P  G  S  I  L  *  R  S  W  K  T  T  T  L  D  C  F  T  C  L  W  K  F  *   : G  C  D  K  S  M  L  A  K  S  K  T  C  N  C  Q  *  K  Q  L  H  Y  R  N  G  S  P  G  Q  C  C  G  G  F  N  F  D  A  *  P  T  S  C  Y  D  V  I  K  P  S  N  F  Y  D  N  I  R  F  E  N  H  C  S  F  R  F  C  G  L  I  F  F  S  S  R  H  Y  R  I  Y  I  W  D  N  R  F  I  S  I  R  G  N  T  H  T  K  *  F  M  E  R  W  I  F  G  K  I  T  C  S  S  *  L  Q  G  *  Y  G  S  F  F  S  S  C  *  S  S  A  N  Y  T  F  T  *  *  V  V  G  *  S  G  R  F  Q  K  G  F  *  *  E  V  I  F  A  I  S  F  F  S  K  V  S  P  S  S  *  G  W  Q  *  E  S  P  H  I  *  L  E  I  K  F  L  T  Q  T   : G  G  C  F  F  C  T  V  V  F  H  S  N  I  F  S  W  *  *  F  F  L  H  N  S  S  R  S  L  G  W  *  E  I  I  G  *  I  I  S  S  S  A  V  R  K  Y  A  F  P  F  C  N  L  D  I  W  S  S  C  T  R  I  Y  V  I  W  I  T  G  *  F  S  C  N  S  E  Y  R  L  F  D  *  F  Y  S  K  F  G  *  F  A  H  K  R  K  S  K  *  R  N  Y  S  R  I  F  R  T  C  E  F  H  I  L  F  S  W  N  K  R  H  Y  W  A  G  Y  S  *  Y  S  W  F  N  C  I  P  P  T  K  I  F  Q  L  C  *  E  N  K  H  Y  T  I  L  Q  *  W  N  P  F  C  W  F  S  K  N  *  E  N  W  S  *  N  K  G  R  A  S  E  *  L  V  I  *  V  G  H  V  V  C  Y  S  S  W  C  F  P  S  N  K   : W  *  N  *  A  I  S  K  V  H  T  A  *  I  A  A  G  K  F  L  Y  T  P  A  V  P  T  Y  T  R  R  N  S  F  F  P  S  K  I  H  S  R  G  Y  E  E  S  S  L  R  Y  L  K  T  I  S  Y  A  R   : D  G  N  F  *  C  Y  E  I  D  T  G  K  P  S  R  A  D  E  R  G  S  I  T  S  K  G  N  T  A  A  S  T  V  I  M  T  R  L  A  K  S  L  V  I  T  Y  S  F  S  F  S  H  V  R  N  A  V  L  G  D  L  Y  *  Q  L  C  S  E  *  R  V  R  K  C  Y  C  V  F  I  *  L  W  A  N  L  G  V  Y  F  T  L  I  *  *  R  S  V  *  W  L  I  N  N  S  *  E  C  C  Y  G  C  V  Q  K  V  G  *  A  N  F  R  N  L  M  Y  R  T  T  D  H  L  I  H  F  D  L  K  N  I  L  P  S  W  R   </second_frame>
            <third_frame>   N  T  *  I  T  P  H  F  T  L  L  S  L  S  L  L  L  K  F  K  S  V  N  C  I  F  H  N  P  R  I  S  S  *  M  N  S  T  D  S  I  K  T  L  L  A  T  T  G  G  D  T  V  K  L  F  D  L  T  L  E  P  R  D  P  C  I  L  S  Y  T  P  S  P  G  F  Q  V  N  S  V  K  W  N  H  T   : N  L  V  V  A  S  A  G  D  D  K  K  I  S  L  W  R  K  N  G  Q  S  L  G  T  V  P  L  A  G  T  D  S  A  D  N  I  E  :  E  S  I  S  T  V  N  F  S  S  K  A  S  R  Y  I  C  S  G  G  S  G  Q  V  I  R  I  W  D  L  Q  R  K  R  C  I  K  W  L  K  G  H  T  N  T  I  S  G  A  M  Y  N  C  K  D  E  H  L  A  S  I  S  L  N  G  N  L  I  L  H  N  L  A  S  G  A  K  A  A  E  L  K  D  P  N  A  Q  :  V  L  R  V  L  D  Y  S  K  I  S  R  H  L  L  V  T  A  G  D  D  G  S  I  H  L  W  D  T  T  G  R  S  P  K  :  V  S  W  L  K  Q  H  S  A  P  T  S  G  I  S  F  S  P  T  N  D  K  :  I  V  A  S  V  G  M  D  K  K  L  Y  T  F  D  S  G  S  R  R  P  T  F  C  I  P  Y  E  A  P  F  S  S  L  A  F  T  D  D  G  F  T  L  A  A  G  T  S  S  G  R  V  V  F  Y  D  V  R  G  K  P  Q  P  L  T  V  L  R  A  Y  G  N  S  E  :  A  V  T  S  L  C  W  Q  R  A  K  P  V  I  V  N  E  N  N  C  T  T  E  M  A  L  L  G  S  A  V  E  D  S  I  L  M  P  D  P  L  P  A  M  M  S  S  S  L  A  T  S  M  T  T  S  G  S  R  T  T  V  R  S  G  S  V  D  S  F  S  F  P  A  G  I  T  G  S  T  S  G  T  T  G  L  S  P  S  E  E  T  P  I  R  S  S  L  W  K  G  G  S  L  A  R  L  H  A  P  R  N  F  K  D  D  M  E  V  F  S  P  L  V  E  V  Q  P  I  T  P  S  L  D  K  L  W  D  D  Q  E  G  F  K  K  D  F  D  K  K  S  S  L  L  F  P  S  S  L  R  F  P  L  P  V  E  G  G  N  E  N  R  P  I  F  D  W  K  S  S  S  L  P  K  Q  :  E  D  A  S  F  A  Q  L  S  S  T  P  T  S  S  R  G  D  D  S  S  S  I  T  P  P  E  A  W  G  G  E  R  L  S  D  R  L  S  H  L  R  Q  S  G  N  M  P  S  R  F  A  I  S  T  S  G  P  L  A  P  G  S  M  L  S  G  L  Q  D  N  F  P  A  T  Q  S  I  G  S  L  T  S  S  T  L  S  L  A  N  L  R  I  K  E  N  P  N  E  E  T  I  L  G  S  S  E  H  A  S  S  T  S  F  S  V  G  T  K  G  I  T  G  Q  G  T  L  D  T  L  G  S  T  V  S  L  P  R  R  F  S  S  Y  A  E  R  I  S  T  T  P  S  F  S  D  G  T  L  S  V  G  S  P  K  T  K  K  T  G  A  E  T  R  E  E  L  L  N  S  L  L  S  R  S  D  T  S  S  A  T  A  A  G  A  F  Q  A  I  N  :  G  E  I  K  Q  S  Q  K  S  T  L  P  E  L  Q  Q  G  S  S  F  T  L  Q  L  F  Q  R  T  Q  E  E  T  L  S  S  L  Q  K  S  I  H  E  D  M  R  N  L  H  L  D  I  L  R  Q  F  H  M  Q  E  :  M  E  T  S  S  A  M  K  L  I  L  E  N  Q  A  E  L  M  K  E  V  Q  L  L  R  R  E  T  Q  Q  L  R  Q  L  L  *  P  D  *  L  K  V  L  S  L  R  I  L  L  V  L  A  M  Y  A  M  L  F  *  E  I  C  T  D  S  C  V  V  S  S  E  C  G  S  V  I  V  C  L  S  N  C  G  R  I  W  G  F  I  L  P  *  Y  S  K  G  V  C  D  G  *  S  I  T  V  K  S  A  V  M  V  V  Y  R  K  L  A  R  P  I  S  E  I  *  C  T  E  L  Q  I  I  *  F  T  L  I  *  K  T  S  F  Q  V  G  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32472" stop="32628"/>
                    <exon start="32698" stop="32810"/>
                    <exon start="34659" stop="34919"/>
                    <exon start="35047" stop="35151"/>
                    <exon start="36011" stop="36076"/>
                    <exon start="36204" stop="36425"/>
                    <exon start="37388" stop="37942"/>
                    <exon start="38292" stop="38888"/>
                    <exon start="39092" stop="39268"/>
                    <exon start="39344" stop="39451"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2358</number_coding_nucleotides>
                  <number_encoded_amino_acids>786</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNSTDSIKTLLATTGGDTVKLFDLTLEPRDPCILSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWRKNGQSLGTVPLAGTDSADNIEESISTVNFSSKASRYICSGGSGQVIRIWDLQRKRCIKWLKGHTNTISGAMYNCKDEHLASISLNGNLILHNLASGAKAAELKDPNAQVLRVLDYSKISRHLLVTAGDDGSIHLWDTTGRSPKVSWLKQHSAPTSGISFSPTNDKIVASVGMDKKLYTFDSGSRRPTFCIPYEAPFSSLAFTDDGFTLAAGTSSGRVVFYDVRGKPQPLTVLRAYGNSEAVTSLCWQRAKPVIVNENNCTTEMALLGSAVEDSILMPDPLPAMMSSSLATSMTTSGSRTTVRSGSVDSFSFPAGITGSTSGTTGLSPSEETPIRSSLWKGGSLARLHAPRNFKDDMEVFSPLVEVQPITPSLDKLWDDQEGFKKDFDKKSSLLFPSSLRFPLPVEGGNENRPIFDWKSSSLPKQEDASFAQLSSTPTSSRGDDSSSITPPEAWGGERLSDRLSHLRQSGNMPSRFAISTSGPLAPGSMLSGLQDNFPATQSIGSLTSSTLSLANLRIKENPNEETILGSSEHASSTSFSVGTKGITGQGTLDTLGSTVSLPRRFSSYAERISTTPSFSDGTLSVGSPKTKKTGAETREELLNSLLSRSDTSSATAAGAFQAINGEIKQSQKSTLPELQQGSSFTLQLFQRTQEETLSSLQKSIHEDMRNLHLDILRQFHMQEMETSSAMKLILENQAELMKEVQLLRRETQQLRQLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37923" e_stop="37942"/>
            <exon e_start="38289" e_stop="38888"/>
            <exon e_start="39092" e_stop="39268"/>
            <exon e_start="39344" e_stop="39779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.370" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37923" e_stop="37942" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.370">
            <gDNA_intron_boundary i_start="37943" i_stop="38288" i_length="346"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38289" e_stop="38888" e_length="600"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38889" i_stop="39091" i_length="203"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39092" e_stop="39268" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.990">
            <gDNA_intron_boundary i_start="39269" i_stop="39343" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39344" e_stop="39779" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37942"/>
              <exon start="38289" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38294" stop="38868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38464" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38500" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38573" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38574" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38574" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38727" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38847" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38856" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38868" stop="38888"/>
              <exon start="39092" stop="39268"/>
              <exon start="39344" stop="39761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39186" stop="39268"/>
              <exon start="39344" stop="39779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTTCCTTACCCAAACAG : CAGGAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT : GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG : ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAG</gDNA_template>
            <first_frame> Q  V  P  Y  P  N  S :   R  R  M  L  L  L  H  S  C  L  P  L  Q  H  L  L  V  V  M  I  L  P  P  *  L  L  Q  K  L  G  V  V  R  D  Y  R  I  D  Y  L  I  F  G  S  Q  E  I  C  L  P  V  L  Q  S  R  H  L  V  L  L  H  Q  D  L  C  Y  L  D  Y  R  I  I  F  L  Q  L  R  V  S  A  L  *  L  V  L  L  *  V  W  L  I  C  A  *  K  K  I  Q  M  K  K  L  F  *  D  L  Q  N  M  R  V  P  H  P  F  Q  L  E  Q  K  A  L  L  G  R  V  L  L  I  L  L  V  Q  L  Y  P  S  H  E  D  F  P  V  M  L  R  E  *  A  L  H  H  P  S  V  M  E  P  F  L  L  V  L  Q  K  L  R  K  L  E  L  K  Q  G  K  S  F  *  I  A  C  Y  L  G  R  T  R  R  L  L  Q  Q  L  V  L  S  K  Q  *  M :   V  K  L  S  N  L  K  S  P  H  C  L  N  C  S  R  E  V  P  L  H  S  S  C  S  N  V  H  K  K  K  L  F  L  P  F  K  N  P  F  T  R  I  *  G  I  F  T  *  I  S  *  D  N  F  I  C  K  R :   W  K  L  L  V  L  *  N  *  Y  W  K  T  K  Q  S  *  *  K  R  F  N  Y  F  E  G  K  H  S  S  F  D  S  Y  Y  D  Q  T  S  *  K  S  C  H  Y  V  F  F  *  F  *  P  C  T  Q  C  C  F  R  R  F  V  L  T  V  V  *  *  V  A  S  A  E  V  L  L  C  V  Y  L  I  V  G  E  F  G  G  L  F  Y  P  N  I  V  K  E  C  V  M  A  D  Q  *  Q  L  R  V  L  L  W  L  C  T  E  S  W  L  G  Q  F  Q  K  F  N  V  Q  N  Y  R  S  S  N  S  L  *  F  K  K  H  P  S  K  L  E  E </first_frame>
            <second_frame>  K  F  L  T  Q  T   : A  G  G  C  F  F  C  T  V  V  F  H  S  N  I  F  S  W  *  *  F  F  L  H  N  S  S  R  S  L  G  W  *  E  I  I  G  *  I  I  S  S  S  A  V  R  K  Y  A  F  P  F  C  N  L  D  I  W  S  S  C  T  R  I  Y  V  I  W  I  T  G  *  F  S  C  N  S  E  Y  R  L  F  D  *  F  Y  S  K  F  G  *  F  A  H  K  R  K  S  K  *  R  N  Y  S  R  I  F  R  T  C  E  F  H  I  L  F  S  W  N  K  R  H  Y  W  A  G  Y  S  *  Y  S  W  F  N  C  I  P  P  T  K  I  F  Q  L  C  *  E  N  K  H  Y  T  I  L  Q  *  W  N  P  F  C  W  F  S  K  N  *  E  N  W  S  *  N  K  G  R  A  S  E  *  L  V  I  *  V  G  H  V  V  C  Y  S  S  W  C  F  P  S  N  K   : W  *  N  *  A  I  S  K  V  H  T  A  *  I  A  A  G  K  F  L  Y  T  P  A  V  P  T  Y  T  R  R  N  S  F  F  P  S  K  I  H  S  R  G  Y  E  E  S  S  L  R  Y  L  K  T  I  S  Y  A  R   : D  G  N  F  *  C  Y  E  I  D  T  G  K  P  S  R  A  D  E  R  G  S  I  T  S  K  G  N  T  A  A  S  T  V  I  M  T  R  L  A  K  S  L  V  I  T  Y  S  F  S  F  S  H  V  R  N  A  V  L  G  D  L  Y  *  Q  L  C  S  E  *  R  V  R  K  C  Y  C  V  F  I  *  L  W  A  N  L  G  V  Y  F  T  L  I  *  *  R  S  V  *  W  L  I  N  N  S  *  E  C  C  Y  G  C  V  Q  K  V  G  *  A  N  F  R  N  L  M  Y  R  T  T  D  H  L  I  H  F  D  L  K  N  I  L  P  S  W  R   </second_frame>
            <third_frame>   S  S  L  P  K  Q  :  Q  E  D  A  S  F  A  Q  L  S  S  T  P  T  S  S  R  G  D  D  S  S  S  I  T  P  P  E  A  W  G  G  E  R  L  S  D  R  L  S  H  L  R  Q  S  G  N  M  P  S  R  F  A  I  S  T  S  G  P  L  A  P  G  S  M  L  S  G  L  Q  D  N  F  P  A  T  Q  S  I  G  S  L  T  S  S  T  L  S  L  A  N  L  R  I  K  E  N  P  N  E  E  T  I  L  G  S  S  E  H  A  S  S  T  S  F  S  V  G  T  K  G  I  T  G  Q  G  T  L  D  T  L  G  S  T  V  S  L  P  R  R  F  S  S  Y  A  E  R  I  S  T  T  P  S  F  S  D  G  T  L  S  V  G  S  P  K  T  K  K  T  G  A  E  T  R  E  E  L  L  N  S  L  L  S  R  S  D  T  S  S  A  T  A  A  G  A  F  Q  A  I  N  :  G  E  I  K  Q  S  Q  K  S  T  L  P  E  L  Q  Q  G  S  S  F  T  L  Q  L  F  Q  R  T  Q  E  E  T  L  S  S  L  Q  K  S  I  H  E  D  M  R  N  L  H  L  D  I  L  R  Q  F  H  M  Q  E  :  M  E  T  S  S  A  M  K  L  I  L  E  N  Q  A  E  L  M  K  E  V  Q  L  L  R  R  E  T  Q  Q  L  R  Q  L  L  *  P  D  *  L  K  V  L  S  L  R  I  L  L  V  L  A  M  Y  A  M  L  F  *  E  I  C  T  D  S  C  V  V  S  S  E  C  G  S  V  I  V  C  L  S  N  C  G  R  I  W  G  F  I  L  P  *  Y  S  K  G  V  C  D  G  *  S  I  T  V  K  S  A  V  M  V  V  Y  R  K  L  A  R  P  I  S  E  I  *  C  T  E  L  Q  I  I  *  F  T  L  I  *  K  T  S  F  Q  V  G  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37925" stop="37942"/>
                    <exon start="38289" stop="38888"/>
                    <exon start="39092" stop="39268"/>
                    <exon start="39344" stop="39451"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLPKQQEDASFAQLSSTPTSSRGDDSSSITPPEAWGGERLSDRLSHLRQSGNMPSRFAISTSGPLAPGSMLSGLQDNFPATQSIGSLTSSTLSLANLRIKENPNEETILGSSEHASSTSFSVGTKGITGQGTLDTLGSTVSLPRRFSSYAERISTTPSFSDGTLSVGSPKTKKTGAETREELLNSLLSRSDTSSATAAGAFQAINGEIKQSQKSTLPELQQGSSFTLQLFQRTQEETLSSLQKSIHEDMRNLHLDILRQFHMQEMETSSAMKLILENQAELMKEVQLLRRETQQLRQLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32413" e_stop="32810"/>
            <exon e_start="34659" e_stop="34899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32413" e_stop="32810" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="32811" i_stop="34658" i_length="1848"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="34659" e_stop="34899" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32413" stop="32810"/>
              <exon start="34659" stop="34899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG : GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAAC</gDNA_template>
            <first_frame> F  F  *  N  S  N  L  *  T  V  Y  F  T  I  Q  E  S  L  H  R  *  I  L  Q  I  R  L  R  P  F  W  L  L  L  A  V  T  L  L  S  F  L  T  S  L  W  N  P  V  I  P  A  F  L  A  I  L  L  P  L  D  S  K  S  I  P  S  S  G  I  T  L  V  S  F  P  F  L  S  *  I  Y  I  L  F  A  N  S  I  *  L  W  V  L  Q  I  W  W  W  Q  A  L  E  M  T  R  R  Y  L  C  G  G  K  M  D  R  V  W  G  L  Y  H  W  P  A  L  I  V  L  T  I  S  R :   S  L  F  Q  Q  L  T  L  A  A  K  H  P  D  T  Y  V  L  E  V  V  A  K  L  Y  E  Y  G  I  C  S  G  S  V  A  S  N  G  *  K  V  I  P  I  L  L  V  V  Q  C  T  I  V  K  M  S  T  *  L  L  S  V  L  M  G  I  L  Y  F  T  T  L  L  L  V  Q  R  L  L  N </first_frame>
            <second_frame>  S  S  E  I  Q  I  C  K  L  Y  I  S  Q  S  K  N  L  F  I  D  E  F  Y  R  F  D  *  D  P  F  G  Y  Y  W  R  *  H  C  *  A  F  *  P  H  F  G  T  P  *  S  L  H  S  *  L  Y  S  F  P  W  I  P  S  Q  F  R  Q  V  E  S  H  *  L  V  S  P  F  Y  H  E  F  T  F  F  L  Q  I  R  F  N  F  G  C  C  R  F  G  G  G  K  R  W  R  *  Q  E  D  I  F  V  E  E  K  W  T  E  F  G  D  C  T  T  G  R  H  *  *  C  *  Q  Y  R   : G  V  Y  F  N  S  *  L  *  Q  Q  S  I  P  I  H  M  F  W  R  *  W  P  S  Y  T  N  M  G  F  A  A  E  A  L  H  Q  M  V  E  R  S  Y  Q  Y  Y  *  W  C  N  V  Q  L  *  R  *  A  L  S  F  Y  Q  S  *  W  E  S  Y  T  S  Q  P  C  F  W  C  K  G  C  *   </second_frame>
            <third_frame>   L  L  K  F  K  S  V  N  C  I  F  H  N  P  R  I  S  S  *  M  N  S  T  D  S  I  K  T  L  L  A  T  T  G  G  D  T  V  K  L  F  D  L  T  L  E  P  R  D  P  C  I  L  S  Y  T  P  S  P  G  F  Q  V  N  S  V  K  W  N  H  T  S  *  F  P  L  S  I  M  N  L  H  S  F  C  K  F  D  L  T  L  G  V  A  D  L  V  V  A  S  A  G  D  D  K  K  I  S  L  W  R  K  N  G  Q  S  L  G  T  V  P  L  A  G  T  D  S  A  D  N  I  E  :  E  S  I  S  T  V  N  F  S  S  K  A  S  R  Y  I  C  S  G  G  S  G  Q  V  I  R  I  W  D  L  Q  R  K  R  C  I  K  W  L  K  G  H  T  N  T  I  S  G  A  M  Y  N  C  K  D  E  H  L  A  S  I  S  L  N  G  N  L  I  L  H  N  L  A  S  G  A  K  A  A  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32634" stop="32810"/>
                    <exon start="34659" stop="34898"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPLSIMNLHSFCKFDLTLGVADLVVASAGDDKKISLWRKNGQSLGTVPLAGTDSADNIEESISTVNFSSKASRYICSGGSGQVIRIWDLQRKRCIKWLKGHTNTISGAMYNCKDEHLASISLNGNLILHNLASGAKAAE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="41819" PGL_stop="40294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41819" e_stop="41426"/>
            <exon e_start="41217" e_stop="40874"/>
            <exon e_start="40792" e_stop="40460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41819" e_stop="41426" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41217" e_stop="40874" e_length="344"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40792" e_stop="40460" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41819" stop="41426"/>
              <exon start="41217" stop="41068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41426"/>
              <exon start="41217" stop="40874"/>
              <exon start="40792" stop="40784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41756" stop="41426"/>
              <exon start="41217" stop="41048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41751" stop="41426"/>
              <exon start="41217" stop="41123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41746" stop="41426"/>
              <exon start="41217" stop="41048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41741" stop="41426"/>
              <exon start="41217" stop="40874"/>
              <exon start="40792" stop="40609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41741" stop="41426"/>
              <exon start="41217" stop="40874"/>
              <exon start="40792" stop="40684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41426"/>
              <exon start="41217" stop="41069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41727" stop="41426"/>
              <exon start="41217" stop="41048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41727" stop="41426"/>
              <exon start="41217" stop="41133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41725" stop="41426"/>
              <exon start="41217" stop="41068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41725" stop="41426"/>
              <exon start="41217" stop="41081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41723" stop="41426"/>
              <exon start="41217" stop="40874"/>
              <exon start="40792" stop="40704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41723" stop="41426"/>
              <exon start="41217" stop="40890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41713" stop="41426"/>
              <exon start="41217" stop="41047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41661" stop="41426"/>
              <exon start="41217" stop="40908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41657" stop="41426"/>
              <exon start="41217" stop="40874"/>
              <exon start="40792" stop="40707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41143" stop="40874"/>
              <exon start="40792" stop="40531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40713" stop="40460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG : GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC : GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTC</gDNA_template>
            <first_frame> P  S  *  S  *  N  S  E  K  K  V  K  S  P  I  N  R  T  C  S  V  N  P  K  P  K  P  P  L  L  L  K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R   : G  *  G  G  S  *  G  F  P  L  Q  D  *  R  S  S  W  T  T  N  Y  Y  I  D  K  R  I  S  R  *  I  Y  K  C  G  S  S  H  A  *  P  C  Y  R  *  *  R  *  E  *  Q  R  W  *  G  *  *  R  R  V  Q  S  V  Q  Y  S  S  S  C  *  G  V  *  E  K  W  T  C  F  G  V  W  Y  H  S  F  C  *  *  D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  :  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y  F  C  Y  R  C  T  M  A  T  *  N  R  M  L  V  N  F  I  Y  T  *  E  L  A  L </first_frame>
            <second_frame>  Q  V  E  V  E  I  P  K  K  K  *  S  L  L  L  I  E  H  V  A  *  T  L  N  P  S  L  L  F  S  L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  :  V  E  E  A  P  E  G  F  P  F  K  I  E  D  H  P  G  Q  Q  T  I  T  L  T  R  E  Y  Q  G  E  S  I  N  V  E  V  H  M  P  D  L  V  T  G  D  E  D  E  N  D  N  G  G  E  D  D  D  E  G  S  N  Q  S  N  I  P  L  V  V  R  V  S  K  R  N  G  P  A  L  E  F  G  I  T  A  F  A  D  E  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T :   D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  F  A  I  D  V  P  W  P  L  K  I  E  C  W  *  I  L  F  I  H  K  S  *  P   </second_frame>
            <third_frame>   K  L  K  L  K  F  R  K  K  S  E  V  S  Y  *  *  N  M  *  R  K  P  *  T  Q  A  S  S  S  P  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R :   L  R  R  L  L  R  V  S  P  S  R  L  K  I  I  L  D  N  K  L  L  H  *  Q  E  N  I  K  V  N  L  *  M  W  K  F  T  C  L  T  L  L  P  V  M  K  M  R  M  T  T  V  V  R  M  M  T  K  G  P  I  S  P  I  F  L  *  L  L  G  C  L  R  E  M  D  L  L  W  S  L  V  S  Q  L  L  L  M  R  L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S   : R  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F  L  L  *  M  Y  H  G  H  L  K  *  N  V  G  E  F  Y  L  Y  I  R  V  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41755" stop="41426"/>
                    <exon start="41217" stop="40874"/>
                    <exon start="40792" stop="40633"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLNPSLLFSLNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITAFADEIAIDTLSIKDPNVAEDQIAYEGPDFTDLDENLQKAFHKYLEIRGIKPSTTNFLHEYMVNKDSREYKMWLKNLKKFIEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41819" e_stop="41426"/>
            <exon e_start="41217" e_stop="40460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41819" e_stop="41426" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="41217" e_stop="40460" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41819" stop="41426"/>
              <exon start="41217" stop="41068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41756" stop="41426"/>
              <exon start="41217" stop="41048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41751" stop="41426"/>
              <exon start="41217" stop="41123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41746" stop="41426"/>
              <exon start="41217" stop="41048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41426"/>
              <exon start="41217" stop="41069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41727" stop="41426"/>
              <exon start="41217" stop="41048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41727" stop="41426"/>
              <exon start="41217" stop="41133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41725" stop="41426"/>
              <exon start="41217" stop="41068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41725" stop="41426"/>
              <exon start="41217" stop="41081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41723" stop="41426"/>
              <exon start="41217" stop="40890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41713" stop="41426"/>
              <exon start="41217" stop="41047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41661" stop="41426"/>
              <exon start="41217" stop="40908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="40532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40713" stop="40460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG : GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTC</gDNA_template>
            <first_frame> P  S  *  S  *  N  S  E  K  K  V  K  S  P  I  N  R  T  C  S  V  N  P  K  P  K  P  P  L  L  L  K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R   : G  *  G  G  S  *  G  F  P  L  Q  D  *  R  S  S  W  T  T  N  Y  Y  I  D  K  R  I  S  R  *  I  Y  K  C  G  S  S  H  A  *  P  C  Y  R  *  *  R  *  E  *  Q  R  W  *  G  *  *  R  R  V  Q  S  V  Q  Y  S  S  S  C  *  G  V  *  E  K  W  T  C  F  G  V  W  Y  H  S  F  C  *  *  D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  V  S  L  D  V  *  F  N  K  F  L  I  C  F  S  L  I  T  N  I  E  Y  I  Y  N  H  Q  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y  F  C  Y  R  C  T  M  A  T  *  N  R  M  L  V  N  F  I  Y  T  *  E  L  A  L </first_frame>
            <second_frame>  Q  V  E  V  E  I  P  K  K  K  *  S  L  L  L  I  E  H  V  A  *  T  L  N  P  S  L  L  F  S  L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  :  V  E  E  A  P  E  G  F  P  F  K  I  E  D  H  P  G  Q  Q  T  I  T  L  T  R  E  Y  Q  G  E  S  I  N  V  E  V  H  M  P  D  L  V  T  G  D  E  D  E  N  D  N  G  G  E  D  D  D  E  G  S  N  Q  S  N  I  P  L  V  V  R  V  S  K  R  N  G  P  A  L  E  F  G  I  T  A  F  A  D  E  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T  *  V  L  M  F  N  L  T  N  F  L  S  V  F  H  *  L  L  I  *  N  I  Y  I  I  I  R  D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  F  A  I  D  V  P  W  P  L  K  I  E  C  W  *  I  L  F  I  H  K  S  *  P   </second_frame>
            <third_frame>   K  L  K  L  K  F  R  K  K  S  E  V  S  Y  *  *  N  M  *  R  K  P  *  T  Q  A  S  S  S  P  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R :   L  R  R  L  L  R  V  S  P  S  R  L  K  I  I  L  D  N  K  L  L  H  *  Q  E  N  I  K  V  N  L  *  M  W  K  F  T  C  L  T  L  L  P  V  M  K  M  R  M  T  T  V  V  R  M  M  T  K  G  P  I  S  P  I  F  L  *  L  L  G  C  L  R  E  M  D  L  L  W  S  L  V  S  Q  L  L  L  M  R  L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S  R  E  S  *  C  L  I  *  Q  I  S  Y  L  F  F  I  N  Y  *  Y  R  I  Y  I  *  S  S  G  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F  L  L  *  M  Y  H  G  H  L  K  *  N  V  G  E  F  Y  L  Y  I  R  V  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41755" stop="41426"/>
                    <exon start="41217" stop="40870"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLNPSLLFSLNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITAFADEIAIDTLSIKDPNVAEDQIAYEGPDFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41758" e_stop="40460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="41758" e_stop="40460" e_length="1299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="40940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="40532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40713" stop="40460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTC</gDNA_template>
            <first_frame> *  T  L  N  P  S  L  L  F  S  L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  V  *  F  S  P  I  L  F  F  M  S  Q  M  N  F  N  T  I  N  *  N  R  L  I  M  D  S  T  T  D  L  F  L  F  L  G  G  F  Y  G  K  F  M  L  F  L  V  L  I  K  K  I  Y  M  L  L  D  *  Q  I  L  Y  C  F  F  I  V  I  A  G  *  G  G  S  *  G  F  P  L  Q  D  *  R  S  S  W  T  T  N  Y  Y  I  D  K  R  I  S  R  *  I  Y  K  C  G  S  S  H  A  *  P  C  Y  R  *  *  R  *  E  *  Q  R  W  *  G  *  *  R  R  V  Q  S  V  Q  Y  S  S  S  C  *  G  V  *  E  K  W  T  C  F  G  V  W  Y  H  S  F  C  *  *  D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  V  S  L  D  V  *  F  N  K  F  L  I  C  F  S  L  I  T  N  I  E  Y  I  Y  N  H  Q  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y  F  C  Y  R  C  T  M  A  T  *  N  R  M  L  V  N  F  I  Y  T  *  E  L  A  L </first_frame>
            <second_frame>  K  P  *  T  Q  A  S  S  S  P  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R  F  D  F  P  Q  F  S  F  S  C  R  R  *  I  L  I  L  L  I  K  I  A  *  L  W  I  L  P  L  I  C  F  C  F  *  V  D  F  M  E  N  S  C  C  F  *  F  *  S  K  K  Y  I  C  Y  W  I  S  R  F  C  T  V  F  S  L  *  L  Q  V  E  E  A  P  E  G  F  P  F  K  I  E  D  H  P  G  Q  Q  T  I  T  L  T  R  E  Y  Q  G  E  S  I  N  V  E  V  H  M  P  D  L  V  T  G  D  E  D  E  N  D  N  G  G  E  D  D  D  E  G  S  N  Q  S  N  I  P  L  V  V  R  V  S  K  R  N  G  P  A  L  E  F  G  I  T  A  F  A  D  E  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T  *  V  L  M  F  N  L  T  N  F  L  S  V  F  H  *  L  L  I  *  N  I  Y  I  I  I  R  D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  F  A  I  D  V  P  W  P  L  K  I  E  C  W  *  I  L  F  I  H  K  S  *  P   </second_frame>
            <third_frame>   N  P  K  P  K  P  P  L  L  L  K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R  G  L  I  F  P  N  S  L  F  H  V  A  D  E  F  *  Y  Y  *  L  K  S  P  N  Y  G  F  Y  H  *  F  V  S  V  F  R  W  I  L  W  K  I  H  A  V  F  S  F  N  Q  K  N  I  Y  V  T  G  L  A  D  F  V  L  F  F  H  C  D  C  R  L  R  R  L  L  R  V  S  P  S  R  L  K  I  I  L  D  N  K  L  L  H  *  Q  E  N  I  K  V  N  L  *  M  W  K  F  T  C  L  T  L  L  P  V  M  K  M  R  M  T  T  V  V  R  M  M  T  K  G  P  I  S  P  I  F  L  *  L  L  G  C  L  R  E  M  D  L  L  W  S  L  V  S  Q  L  L  L  M  R  L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S  R  E  S  *  C  L  I  *  Q  I  S  Y  L  F  F  I  N  Y  *  Y  R  I  Y  I  *  S  S  G  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F  L  L  *  M  Y  H  G  H  L  K  *  N  V  G  E  F  Y  L  Y  I  R  V  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41223" stop="40870"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITAFADEIAIDTLSIKDPNVAEDQIAYEGPDFT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41755" stop="41420"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLNPSLLFSLNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="41758" e_stop="41426"/>
            <exon e_start="41217" e_stop="41185"/>
            <exon e_start="40950" e_stop="40874"/>
            <exon e_start="40792" e_stop="40294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.987"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41758" e_stop="41426" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41425" i_stop="41218" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41217" e_stop="41185" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41184" i_stop="40951" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="40950" e_stop="40874" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40873" i_stop="40793" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="40792" e_stop="40294" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41722" stop="41426"/>
              <exon start="41217" stop="41185"/>
              <exon start="40950" stop="40874"/>
              <exon start="40792" stop="40294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40713" stop="40460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG : GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAG : ATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC : GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTCTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAACAATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCT</gDNA_template>
            <first_frame> *  T  L  N  P  S  L  L  F  S  L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  :  V  E  E  A  P  E  G  F  P  F  K  :  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T :   D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  F  A  I  D  V  P  W  P  L  K  I  E  C  W  *  I  L  F  I  H  K  S  *  P  S  L  L  S  A  S  S  V  C  T  C  S  S  R  L  L  L  V  D  E  I  A  F  P  L  L  L  S  S  Q  I  T  L  R  M  I  L  L  S  L  N  N  D  F  S  N  M  Y  W  L  A  Y  S  F  V  S </first_frame>
            <second_frame>  K  P  *  T  Q  A  S  S  S  P  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R :   L  R  R  L  L  R  V  S  P  S  R :   L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S   : R  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F  L  L  *  M  Y  H  G  H  L  K  *  N  V  G  E  F  Y  L  Y  I  R  V  S  P  R  F  Y  Q  L  V  L  F  A  L  A  A  A  G  C  C  L  L  M  R  L  H  F  H  C  Y  C  Q  V  K  S  L  C  A  *  Y  C  F  R  L  T  M  I  S  Q  T  C  I  G  L  H  I  H  L  C   </second_frame>
            <third_frame>   N  P  K  P  K  P  P  L  L  L  K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R   : G  *  G  G  S  *  G  F  P  L  Q   : D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  :  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y  F  C  Y  R  C  T  M  A  T  *  N  R  M  L  V  N  F  I  Y  T  *  E  L  A  L  A  F  I  S  *  F  C  L  H  L  Q  Q  Q  V  V  A  C  *  *  D  C  I  S  I  V  I  V  K  S  N  H  F  A  H  D  I  A  F  A  *  Q  *  F  L  K  H  V  L  A  C  I  F  I  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41755" stop="41426"/>
                    <exon start="41217" stop="41185"/>
                    <exon start="40950" stop="40874"/>
                    <exon start="40792" stop="40633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLNPSLLFSLNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEVEEAPEGFPFKIAIDTLSIKDPNVAEDQIAYEGPDFTDLDENLQKAFHKYLEIRGIKPSTTNFLHEYMVNKDSREYKMWLKNLKKFIEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="46687" PGL_stop="42641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46687" e_stop="46286"/>
            <exon e_start="45927" e_stop="45812"/>
            <exon e_start="45100" e_stop="44974"/>
            <exon e_start="43384" e_stop="43236"/>
            <exon e_start="43146" e_stop="43084"/>
            <exon e_start="42981" e_stop="42641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="0.887" e_score="1.000"/>
          <exon-intron don_prob="0.690" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46687" e_stop="46286" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46285" i_stop="45928" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45927" e_stop="45812" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.872" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45811" i_stop="45101" i_length="711"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45100" e_stop="44974" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.674" acc_prob="0.887">
            <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43384" e_stop="43236" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.690" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43146" e_stop="43084" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42981" e_stop="42641" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46687" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46684" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46679" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46669" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46655" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46644" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46644" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46643" stop="46286"/>
              <exon start="45927" stop="45813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46643" stop="46286"/>
              <exon start="45927" stop="45819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46640" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46626" stop="46286"/>
              <exon start="45927" stop="45856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46623" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46508" stop="46286"/>
              <exon start="45927" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45920" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45920" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45897" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45853" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45852" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45852" stop="45812"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43320" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43316" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43256" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42967" stop="42761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCCAACTCCCCGAAAAACCCCTTTTCTCCATTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTTTCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGAACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTGGACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATCTCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAG : GCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTGGTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAG : TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG : CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG : TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG : GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGATTTGTCCACTATTTTAAAGAAAAAGAAAAATTAGAGTGTCGTTGGGGAAATGAAGCTATAAGGCATAAGCTTTTCCCGTAGATTTCAGCAAATAGAAACGTGTTTTCTCAGATG</gDNA_template>
            <first_frame> H  P  T  P  R  K  T  P  F  L  H  L  H  T  P  N  F  H  F  K  R  R  E  K  G  L  P  A  A  E  I  F  S  I  P  M  G  E  G  K  Q  G  A  M  V  V  E  M  P  N  S  S  N  Q  N  P  I  V  Q  L  Q  N  K  F  K  E  L  E  I  G  F  K  G  W  L  S  K  Q  S  I  P  V  E  A  A  V  V  T  A  T  S  G  L  Q  G  A  A  I  G  G  F  M  G  T  L  T  Q  D  V  S  S  S  M  P  I  P  P  A  G  A  N  L  N  P  Q  A  M  A  S  F  Q  Q  A  Q  :  A  L  A  G  G  P  L  V  Q  A  R  N  F  A  V  M  T  G  V  N  A  G  I  S  C  V  L  K  R  I  R  G  K  E  D  V  Q  S  S :   M  A  A  A  F  G  S  G  A  L  F  S  L  V  S  G  M  G  G  P  N  P  V  P  N  A  L  T  S  G  I  F  F  A  L  V  Q  G  G  L  F  E  :  L  G  R  K  F  S  Q  P  P  A  E  D  T  H  Y  V  R  T  R  S  L  L  S  S  L  G  L  Q  N  Y  E  K  N  F  K  K  G  L  L  T  D  T  T  L  P  L  L  T  D  S :   A  L  R  D  V  R  I  P  P  G  P  R  L  L  I  L  D  H  I  Q  R :   D  P  E  L  R  K  K  R  G  *  T  H  C  K  R  *  S  F  P  L  S  E  R  P  I  L  *  F  E  K  *  *  Q  F  H  V  M  F  L  *  C  S  S  E  L  G  Y  Y  G  T  S  L  S  V  S  S  C  H  Q  I  T  R  Q  T  C  Y  L  S  S  L  S  *  K  H  Q  I  C  P  L  F  *  R  K  R  K  I  R  V  S  L  G  K  *  S  Y  K  A  *  A  F  P  V  D  F  S  K  *  K  R  V  F  S  D  </first_frame>
            <second_frame>  T  Q  L  P  E  K  P  L  F  S  I  C  I  H  Q  T  F  I  S  N  G  E  K  K  G  Y  L  R  L  K  F  S  Q  F  Q  W  V  K  E  S  K  E  L  W  W  L  K  C  Q  I  A  A  I  R  I  Q  *  F  S  C  R  T  S  L  R  N  W  K  S  A  S  K  G  G  Y  R  S  S  Q  F  Q  L  K  L  L  W  *  Q  Q  L  V  D  Y  R  G  L  L  L  V  D  L  W  E  R  L  H  R  M  C  L  P  L  C  L  F  L  L  L  V  L  I  S  I  P  K  L  W  P  L  F  N  K  L  R :   L  S  Q  E  V  R  W  F  R  L  G  I  L  L  L  *  L  V  L  M  L  A  Y  L  V  F  *  K  E  L  E  A  R  K  M  C  S  P   : V  W  Q  L  P  L  V  L  E  L  C  F  H  *  L  A  A  W  V  A  Q  I  Q  Y  P  M  L  *  H  L  G  F  S  L  P  L  F  K  V  D  C  L  S :   S  G  G  S  F  L  N  H  L  L  K  I  R  I  M  S  E  R  D  H  Y  C  Q  A  L  A  C  K  I  M  K  R  I  S  K  K  G  C  *  Q  T  P  L  C  L  Y  S  L  I   : V  L  L  E  M  *  G  S  L  L  G  Q  D  F  L  F  L  I  I  Y  K   : G  I  R  N  S  E  R  N  E  D  E  L  T  A  K  D  E  V  F  L  C  R  K  D  L  F  C  N  L  R  S  S  D  S  F  M  L  C  F  Y  D  V  P  V  N  *  V  I  M  E  L  L  *  V  *  V  L  A  I  R  *  Q  G  R  H  A  I  Y  R  V  *  A  R  N  I  R  F  V  H  Y  F  K  E  K  E  K  L  E  C  R  W  G  N  E  A  I  R  H  K  L  F  P  *  I  S  A  N  R  N  V  F  S  Q  M </second_frame>
            <third_frame>   P  N  S  P  K  N  P  F  S  P  F  A  Y  T  K  L  S  F  Q  T  E  R  K  R  A  T  C  G  *  N  F  L  N  S  N  G  *  R  K  A  R  S  Y  G  G  *  N  A  K  *  Q  Q  S  E  S  N  S  S  V  A  E  Q  V  *  G  I  G  N  R  L  Q  R  V  V  I  E  A  V  N  S  S  *  S  C  C  G  D  S  N  *  W  T  T  G  G  C  Y  W  W  I  Y  G  N  A  Y  T  G  C  V  F  L  Y  A  Y  S  S  C  W  C  *  S  Q  S  P  S  Y  G  L  F  S  T  S  S   : G  S  R  R  R  S  V  G  S  G  S  E  F  C  C  Y  D  W  C  *  C  W  H  I  L  C  F  E  K  N  *  R  Q  G  R  C  A  V  Q  :  Y  G  S  C  L  W  F  W  S  S  V  F  T  S  *  R  H  G  W  P  K  S  S  T  Q  C  F  D  I  W  D  F  L  C  P  C  S  R  W  T  V  *   : A  R  A  E  V  F  S  T  T  C  *  R  Y  A  L  C  Q  N  E  I  T  I  V  K  P  W  P  A  K  L  *  K  E  F  Q  K  R  V  V  D  R  H  H  F  A  F  T  H  *  *  :  C  S  *  R  C  E  D  P  S  W  A  K  T  S  Y  S  *  S  Y  T  K  :  G  S  G  T  Q  K  E  T  R  M  N  S  L  Q  K  M  K  F  S  F  V  G  K  T  Y  S  V  I  *  E  V  V  T  V  S  C  Y  V  F  M  M  F  Q  *  T  R  L  L  W  N  F  F  E  C  K  F  L  P  S  D  N  K  A  D  M  L  F  I  E  F  E  L  E  T  S  D  L  S  T  I  L  K  K  K  K  N  *  S  V  V  G  E  M  K  L  *  G  I  S  F  S  R  R  F  Q  Q  I  E  T  C  F  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46687" stop="46286"/>
                    <exon start="45927" stop="45812"/>
                    <exon start="45100" stop="44974"/>
                    <exon start="43384" stop="43236"/>
                    <exon start="43146" stop="43084"/>
                    <exon start="42981" stop="42951"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPTPRKTPFLHLHTPNFHFKRREKGLPAAEIFSIPMGEGKQGAMVVEMPNSSNQNPIVQLQNKFKELEIGFKGWLSKQSIPVEAAVVTATSGLQGAAIGGFMGTLTQDVSSSMPIPPAGANLNPQAMASFQQAQALAGGPLVQARNFAVMTGVNAGISCVLKRIRGKEDVQSSMAAAFGSGALFSLVSGMGGPNPVPNALTSGIFFALVQGGLFELGRKFSQPPAEDTHYVRTRSLLSSLGLQNYEKNFKKGLLTDTTLPLLTDSALRDVRIPPGPRLLILDHIQRDPELRKKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45405" e_stop="45400"/>
            <exon e_start="45100" e_stop="44974"/>
            <exon e_start="43384" e_stop="43236"/>
            <exon e_start="43146" e_stop="43084"/>
            <exon e_start="42981" e_stop="42641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.728" acc_prob="0.999" e_score="0.667"/>
          <exon-intron don_prob="0.674" acc_prob="0.887" e_score="0.984"/>
          <exon-intron don_prob="0.690" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="45405" e_stop="45400" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.728" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45399" i_stop="45101" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="45100" e_stop="44974" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.674" acc_prob="0.887">
            <gDNA_intron_boundary i_start="44973" i_stop="43385" i_length="1589"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="43384" e_stop="43236" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.690" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43235" i_stop="43147" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43146" e_stop="43084" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43083" i_stop="42982" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42981" e_stop="42641" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45405" stop="45400"/>
              <exon start="45100" stop="44974"/>
              <exon start="43384" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43320" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43316" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43256" stop="43236"/>
              <exon start="43146" stop="43084"/>
              <exon start="42981" stop="42761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42967" stop="42761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTAG : TATGGCAGCTGCCTTTGGTTCTGGAGCTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTGGACTGTTTGAG : CTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCCTGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAG : TGCTCTTAGAGATGTGAGGATCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAG : GGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGATGAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAGGTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACATCAGATTTGTCCACTATTTTAAAGAAAAAGAAAAATTAGAGTGTCGTTGGGGAAATGAAGCTATAAGGCATAAGCTTTTCCCGTAGATTTCAGCAAATAGAAACGTGTTTTCTCAGATG</gDNA_template>
            <first_frame> D  *  :  Y  G  S  C  L  W  F  W  S  S  V  F  T  S  *  R  H  G  W  P  K  S  S  T  Q  C  F  D  I  W  D  F  L  C  P  C  S  R  W  T  V  *   : A  R  A  E  V  F  S  T  T  C  *  R  Y  A  L  C  Q  N  E  I  T  I  V  K  P  W  P  A  K  L  *  K  E  F  Q  K  R  V  V  D  R  H  H  F  A  F  T  H  *  *  :  C  S  *  R  C  E  D  P  S  W  A  K  T  S  Y  S  *  S  Y  T  K  :  G  S  G  T  Q  K  E  T  R  M  N  S  L  Q  K  M  K  F  S  F  V  G  K  T  Y  S  V  I  *  E  V  V  T  V  S  C  Y  V  F  M  M  F  Q  *  T  R  L  L  W  N  F  F  E  C  K  F  L  P  S  D  N  K  A  D  M  L  F  I  E  F  E  L  E  T  S  D  L  S  T  I  L  K  K  K  K  N  *  S  V  V  G  E  M  K  L  *  G  I  S  F  S  R  R  F  Q  Q  I  E  T  C  F  L  R   </first_frame>
            <second_frame>  T  S :   M  A  A  A  F  G  S  G  A  L  F  S  L  V  S  G  M  G  G  P  N  P  V  P  N  A  L  T  S  G  I  F  F  A  L  V  Q  G  G  L  F  E  :  L  G  R  K  F  S  Q  P  P  A  E  D  T  H  Y  V  R  T  R  S  L  L  S  S  L  G  L  Q  N  Y  E  K  N  F  K  K  G  L  L  T  D  T  T  L  P  L  L  T  D  S :   A  L  R  D  V  R  I  P  P  G  P  R  L  L  I  L  D  H  I  Q  R :   D  P  E  L  R  K  K  R  G  *  T  H  C  K  R  *  S  F  P  L  S  E  R  P  I  L  *  F  E  K  *  *  Q  F  H  V  M  F  L  *  C  S  S  E  L  G  Y  Y  G  T  S  L  S  V  S  S  C  H  Q  I  T  R  Q  T  C  Y  L  S  S  L  S  *  K  H  Q  I  C  P  L  F  *  R  K  R  K  I  R  V  S  L  G  K  *  S  Y  K  A  *  A  F  P  V  D  F  S  K  *  K  R  V  F  S  D  </second_frame>
            <third_frame>   L   : V  W  Q  L  P  L  V  L  E  L  C  F  H  *  L  A  A  W  V  A  Q  I  Q  Y  P  M  L  *  H  L  G  F  S  L  P  L  F  K  V  D  C  L  S :   S  G  G  S  F  L  N  H  L  L  K  I  R  I  M  S  E  R  D  H  Y  C  Q  A  L  A  C  K  I  M  K  R  I  S  K  K  G  C  *  Q  T  P  L  C  L  Y  S  L  I   : V  L  L  E  M  *  G  S  L  L  G  Q  D  F  L  F  L  I  I  Y  K   : G  I  R  N  S  E  R  N  E  D  E  L  T  A  K  D  E  V  F  L  C  R  K  D  L  F  C  N  L  R  S  S  D  S  F  M  L  C  F  Y  D  V  P  V  N  *  V  I  M  E  L  L  *  V  *  V  L  A  I  R  *  Q  G  R  H  A  I  Y  R  V  *  A  R  N  I  R  F  V  H  Y  F  K  E  K  E  K  L  E  C  R  W  G  N  E  A  I  R  H  K  L  F  P  *  I  S  A  N  R  N  V  F  S  Q  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45404" stop="45400"/>
                    <exon start="45100" stop="44974"/>
                    <exon start="43384" stop="43236"/>
                    <exon start="43146" stop="43084"/>
                    <exon start="42981" stop="42951"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSMAAAFGSGALFSLVSGMGGPNPVPNALTSGIFFALVQGGLFELGRKFSQPPAEDTHYVRTRSLLSSLGLQNYEKNFKKGLLTDTTLPLLTDSALRDVRIPPGPRLLILDHIQRDPELRKKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="50504" PGL_stop="54698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50532" e_stop="50743"/>
            <exon e_start="51775" e_stop="52033"/>
            <exon e_start="52135" e_stop="52196"/>
            <exon e_start="54628" e_stop="54698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50532" e_stop="50743" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.884">
            <gDNA_intron_boundary i_start="50744" i_stop="51774" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51775" e_stop="52033" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.736">
            <gDNA_intron_boundary i_start="52034" i_stop="52134" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52135" e_stop="52196" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52197" i_stop="54627" i_length="2431"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54628" e_stop="54698" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50532" stop="50743"/>
              <exon start="51775" stop="52033"/>
              <exon start="52135" stop="52196"/>
              <exon start="54628" stop="54698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50613" stop="50743"/>
              <exon start="51775" stop="52033"/>
              <exon start="52135" stop="52196"/>
              <exon start="54628" stop="54681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAG : GCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAG : GAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAA : GAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGT</gDNA_template>
            <first_frame> *  N  L  K  S  N  G  G  K  I  I  S  S  I  W  P  L  T  I  Y  I  Y  Y  I  I  F  S  L  *  L  L  T  L  F  F  S  L  S  Q  A  R  V  L  V  S  T  E  I  I  L  S  K  L  R  K  W  L  I  L  E  K  N  L  Q  I  G  S  A  V  F  R :   H  L  L  R  *  S  C  H  P  D  L  N  L  L  *  I  T  T  T  *  V  M  M  R  I  A  S  I  *  V  S  C  F  R  R  I  K  H  H  F  Q  R  K  N  V  V  R  M  D  M  D  L  N  S  R  R  R  P  K  *  I  L  R  L  K  M  K  K  *  I  A  H  L  L  G  R  E  R  M  K  T  R  V  K  K  K  :  E  K  A  L  T  R  L  *  R  R  E  E  H  W  R  S  L  L  Q  I  K :   N  P  V  I  Q  S  V  R  C  H  R  I  L  S  L  L  M  M  A  V  P  *  K  </first_frame>
            <second_frame>  K  I  *  N  Q  M  E  G  K  *  F  P  V  S  G  L  *  R  Y  T  Y  I  T  S  Y  F  H  F  N  Y  S  H  F  F  F  L  S  H  R  Q  G  F  *  Y  P  L  K  L  F  S  Q  N  L  E  N  G  *  F  *  R  R  I  S  R  L  A  P  Q  F  S   : G  T  C  C  D  N  L  V  I  R  I  *  I  S  C  K  *  Q  P  P  K  *  *  *  G  *  H  Q  S  E  *  A  V  S  E  G  *  N  I  T  F  R  G  K  M  *  S  G  W  T  W  I  S  T  Q  E  D  V  R  S  K  F  S  D  *  K  *  R  S  R  S  H  T  Y  *  E  E  K  E  *  K  P  E  *  K  K  R :   K  R  H  *  Q  G  F  N  E  E  K  S  I  G  E  A  F  Y  R  *   : R  T  Q  S  F  S  L  Y  V  V  I  G  F  *  V  S  S  *  W  Q  F  H  E  S </second_frame>
            <third_frame>   K  S  E  I  K  W  R  E  N  N  F  Q  Y  L  A  F  N  D  I  H  I  L  H  H  I  F  T  L  T  T  H  T  F  F  F  S  L  T  G  K  G  F  S  I  H  *  N  Y  S  L  K  T  *  K  M  A  D  S  R  E  E  S  P  D  W  L  R  S  F  Q  :  A  P  A  A  I  I  L  S  S  G  S  E  S  P  V  N  N  N  H  L  S  D  D  E  D  S  I  N  L  S  K  L  F  Q  K  D  K  T  S  L  S  E  E  K  C  S  Q  D  G  H  G  S  Q  L  K  K  T  S  E  V  N  S  P  I  K  N  E  E  V  D  R  T  P  T  R  K  R  K  N  E  N  Q  S  E  K  K   : G  K  G  T  D  K  A  L  T  K  R  R  A  L  E  K  P  F  T  D  K  :  E  P  S  H  S  V  C  T  L  S  S  D  S  E  S  P  H  D  G  S  S  M  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50693" stop="50743"/>
                    <exon start="51775" stop="52033"/>
                    <exon start="52135" stop="52196"/>
                    <exon start="54628" stop="54696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADSREESPDWLRSFQAPAAIILSSGSESPVNNNHLSDDEDSINLSKLFQKDKTSLSEEKCSQDGHGSQLKKTSEVNSPIKNEEVDRTPTRKRKNENQSEKKGKGTDKALTKRRALEKPFTDKEPSHSVCTLSSDSESPHDGSSMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50504" e_stop="51058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="50504" e_stop="51058" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50504" stop="51058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTAGTTTTGTTGAAATCATTGTTTACTGTGTATCAC</gDNA_template>
            <first_frame> T  P  A  H  K  P  F  P  M  L  K  S  E  I  K  W  R  E  N  N  F  Q  Y  L  A  F  N  D  I  H  I  L  H  H  I  F  T  L  T  T  H  T  F  F  F  S  L  T  G  K  G  F  S  I  H  *  N  Y  S  L  K  T  *  K  M  A  D  S  R  E  E  S  P  D  W  L  R  S  F  Q  V  *  L  F  *  F  H  R  N  F  H  K  F  A  R  Y  A  L  F  K  V  D  F  M  H  *  I  Y  V  *  L  V  E  Q  S  F  D  *  V  L  T  D  F  E  H  Q  F  D  W  S  F  S  C  E  I  Q  T  L  I  N  S  I  F  C  S  Q  C  F  V  A  E  V  D  S  S  T  C  I  *  F  *  S  T  F  G  L  G  Y  A  N  L  G  Q  L  V  L  L  K  S  L  F  T  V  Y  H </first_frame>
            <second_frame>  P  L  L  T  S  L  F  P  C  *  N  L  K  S  N  G  G  K  I  I  S  S  I  W  P  L  T  I  Y  I  Y  Y  I  I  F  S  L  *  L  L  T  L  F  F  S  L  S  Q  A  R  V  L  V  S  T  E  I  I  L  S  K  L  R  K  W  L  I  L  E  K  N  L  Q  I  G  S  A  V  F  R  Y  N  C  F  D  F  I  G  I  F  I  N  L  L  A  M  H  F  S  K  S  I  L  C  T  E  S  M  F  N  *  L  S  N  H  L  I  E  F  *  P  I  L  N  I  S  L  I  G  L  S  A  A  R  F  K  L  *  S  I  Q  F  F  V  H  S  A  S  W  R  R  *  I  Q  V  H  V  Y  S  F  R  A  H  L  G  *  G  M  L  I  W  G  N  *  F  C  *  N  H  C  L  L  C  I   </second_frame>
            <third_frame>   P  C  S  Q  A  F  S  H  V  K  I  *  N  Q  M  E  G  K  *  F  P  V  S  G  L  *  R  Y  T  Y  I  T  S  Y  F  H  F  N  Y  S  H  F  F  F  L  S  H  R  Q  G  F  *  Y  P  L  K  L  F  S  Q  N  L  E  N  G  *  F  *  R  R  I  S  R  L  A  P  Q  F  S  G  I  T  V  L  I  S  S  E  F  S  *  I  C  S  L  C  T  F  Q  S  R  F  Y  A  L  N  L  C  L  I  S  *  A  I  I  *  L  S  F  N  R  F  *  T  S  V  *  L  V  F  Q  L  R  D  S  N  F  D  Q  F  N  F  L  F  T  V  L  R  G  G  G  R  F  K  Y  M  Y  I  V  L  E  H  I  W  V  R  V  C  *  F  G  A  I  S  F  V  E  I  I  V  Y  C  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50619" stop="50837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTLFFSLSQARVLVSTEIILSKLRKWLILEKNLQIGSAVFRYNCFDFIGIFINLLAMHFSKSILCTESMFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="57557" PGL_stop="58024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57557" e_stop="57614"/>
            <exon e_start="57696" e_stop="58024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.790" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57557" e_stop="57614" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.790">
            <gDNA_intron_boundary i_start="57615" i_stop="57695" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="57696" e_stop="58024" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57557" stop="57614"/>
              <exon start="57696" stop="58023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57558" stop="57614"/>
              <exon start="57696" stop="58024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57558" stop="57614"/>
              <exon start="57696" stop="58024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCG : GCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCTAATGTCGATG</gDNA_template>
            <first_frame> *  E  C  *  S  S  D  Q  W  E  C  Q  S  K  S  *  E  S  L   : G  Y  G  T  K  E  G  Q  E  G  S  K  D  T  K  E  S  K  K  E  T  S  S  A  E  E  K  Q  E  Q  K  I  R  Y  D  S  T  Y  F  I  S  F  D  M  Y  S  I  Y  F  L  F  L  F  S  F  F  F  F  C  S  L  Y  T  Y  T  D  H  I  F  *  K  L  M  K  V  V  F  R  K  L  Y  N  W  *  R  P  H  N  M  Y  Y  L  Q  D  F  L  M  I  I  L  H  I  T  I  K  I  L  M  S  M </first_frame>
            <second_frame>  E  N  V  D  H  Q  T  N  G  N  V  K  A  K  A  K  K  A  S  :  A  M  E  Q  K  K  G  K  K  G  A  K  I  P  K  K  V  K  K  K  P  Q  V  Q  K  K  S  K  S  K  K  *  D  M  T  L  H  I  S  F  R  L  I  C  I  L  F  I  F  F  S  Y  F  L  S  F  S  S  V  L  C  I  H  I  L  I  I  F  F  K  S  *  *  K  *  S  L  G  S  Y  I  I  G  R  G  H  I  I  C  I  I  C  K  I  F  S  *  L  S  S  I  L  P  *  K  F  *  C  R   </second_frame>
            <third_frame>   R  M  L  I  I  R  P  M  G  M  S  K  Q  K  L  R  K  P  R :   L  W  N  K  R  R  A  R  R  E  Q  R  Y  Q  R  K  *  K  R  N  L  K  C  R  R  K  A  R  A  K  N  K  I  *  L  Y  I  F  H  F  V  *  Y  V  F  Y  L  F  S  F  L  I  F  F  L  F  L  L  F  F  V  Y  I  Y  *  S  Y  F  L  K  A  N  E  S  S  L  *  E  A  I  *  L  V  E  A  T  *  Y  V  L  F  A  R  F  S  H  D  Y  P  P  Y  Y  H  K  N  S  N  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57605" stop="57614"/>
                    <exon start="57696" stop="57904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESLGYGTKEGQEGSKDTKESKKETSSAEEKQEQKIRYDSTYFISFDMYSIYFLFLFSFFFFCSLYTYTDHIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="65642" PGL_stop="63954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65642" e_stop="65557"/>
            <exon e_start="64423" e_stop="63954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.674" e_score="0.930"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="65642" e_stop="65557" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.674">
            <gDNA_intron_boundary i_start="65556" i_stop="64424" i_length="1133"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="64423" e_stop="63954" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65642" stop="65557"/>
              <exon start="64423" stop="63954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65597" stop="65557"/>
              <exon start="64423" stop="64131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAGTCTTAGAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAAGAAAAAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATC : AGCATCCGGGGCAAGGCGAGTGGGGTGTGGATATCTTCTCAGAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTGGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGTCTAACTGGGCTGACACACATTTGCGACAAAAACTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCGACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAAGGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</gDNA_template>
            <first_frame> E  K  V  L  E  R  E  S  E  *  Q  V  R  E  G  E  E  K  A  C  *  V  F  F  I  S  G  S  S :   A  S  G  A  R  R  V  G  C  G  Y  L  L  R  T  Q  V  F  *  L  T  E  Q  W  R  Y  L  E  N  L  W  *  Q  C  L  Q  M  L  Y  I  C  Q  L  F  W  A  K  M  A  Q  T  L  F  T  S  V  I  G  N  V  K  M  N  M  C  V  G  T  C  S  A  A  V  *  L  G  *  H  T  F  A  T  K  T  V  T  S  E  Y  C  M  I  T  I  T  L  F  A  E  L  A  D  R  F  S  L  *  H  K  L  K  C  R  L  *  K  V  Y  G  G  S  L  M  L  I  V  P  L  L  I  A  A  P  L  S  A  E  G  M  H  I  S  T  H  H  H  L  R  D  L  S  L  L  L  V  P  </first_frame>
            <second_frame>  K  K  S  *  R  E  K  V  S  D  K  *  E  K  E  K  K  K  L  V  R  C  S  S  F  R  V  H   : Q  H  P  G  Q  G  E  W  G  V  D  I  F  S  E  L  K  F  F  D  *  L  N  N  G  G  T  W  K  I  Y  G  S  S  A  Y  K  C  Y  I  S  V  N  Y  S  G  P  R  W  P  K  P  C  S  Q  V  *  L  E  M  *  K  *  T  C  V  W  E  H  V  P  L  P  S  N  W  A  D  T  H  L  R  Q  K  L  *  P  A  N  I  V  *  *  P  *  L  S  L  Q  S  *  P  T  D  F  P  F  N  T  S  *  S  A  G  C  E  R  C  T  E  E  V  *  C  *  *  F  P  F  *  *  L  R  L  *  A  Q  K  G  C  T  F  P  P  I  T  I  *  E  I  F  H  C  C  *  S  H </second_frame>
            <third_frame>   K  S  L  R  E  R  K  *  V  T  S  E  R  R  R  R  K  S  L  L  G  V  L  H  F  G  F  I  :  S  I  R  G  K  A  S  G  V  W  I  S  S  Q  N  S  S  F  L  I  N  *  T  M  E  V  L  G  K  S  M  V  A  V  P  T  N  V  I  Y  L  S  T  I  L  G  Q  D  G  P  N  P  V  H  K  C  D  W  K  C  E  N  E  H  V  C  G  N  M  F  R  C  R  L  T  G  L  T  H  I  C  D  K  N  C  N  Q  R  I  L  Y  D  N  H  N  S  L  C  R  V  S  R  Q  I  F  P  L  T  Q  V  E  V  Q  A  V  K  G  V  R  R  K  F  D  A  D  S  S  P  S  D  S  C  A  F  K  R  R  R  D  A  H  F  H  P  S  P  F  E  R  S  F  T  A  V  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64357" stop="63956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMEVLGKSMVAVPTNVIYLSTILGQDGPNPVHKCDWKCENEHVCGNMFRCRLTGLTHICDKNCNQRILYDNHNSLCRVSRQIFPLTQVEVQAVKGVRRKFDADSSPSDSCAFKRRRDAHFHPSPFERSFTAVSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="67880" PGL_stop="68303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67880" e_stop="68303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="67880" e_stop="68303" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67880" stop="68303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTTGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAACAAAATCACCAATTTCGCAGCTACTATTCACGACAGCAAAACTGAAGATGCAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAGGATAATATGCTGTCCAAAAATCAGCTCAATCGGATAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTATGGCTGAAATTTGACTGCGAAAATCTGCTCTTTTTCTCTCTTTTTGGCTACTAAAAAACTCTCTCTAAAAAAT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  S  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  N  K  I  T  N  F  A  A  T  I  H  D  S  K  T  E  D  A  G  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  I  R  N  E  A  G  I  A  I  *  S  W  L  L  W  L  K  F  D  C  E  N  L  L  F  F  S  L  F  G  Y  *  K  T  L  S  K  K  </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  L  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  T  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  M  Q  A  T  K  S  N  S  V  S  S  *  S  K  I  E  M  R  I  I  C  C  P  K  I  S  S  I  G  *  E  T  K  R  E  S  Q  F  E  V  G  C  Y  G  *  N  L  T  A  K  I  C  S  F  S  L  F  L  A  T  K  K  L  S  L  K  N </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  *  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  V  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  Y  S  R  Q  Q  N  *  R  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  G  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  A  V  M  A  E  I  *  L  R  K  S  A  L  F  L  S  F  W  L  L  K  N  S  L  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0025K18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="84137" PGL_stop="79179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84137" e_stop="84083"/>
            <exon e_start="83999" e_stop="83917"/>
            <exon e_start="83022" e_stop="82919"/>
            <exon e_start="81360" e_stop="81290"/>
            <exon e_start="80507" e_stop="80209"/>
            <exon e_start="80058" e_stop="79179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.556" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.137" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84137" e_stop="84083" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.556" acc_prob="0.787">
            <gDNA_intron_boundary i_start="84082" i_stop="84000" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83999" e_stop="83917" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.137" acc_prob="0.754">
            <gDNA_intron_boundary i_start="83916" i_stop="83023" i_length="894"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83022" e_stop="82919" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82918" i_stop="81361" i_length="1558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81360" e_stop="81290" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.656" acc_prob="0.880">
            <gDNA_intron_boundary i_start="81289" i_stop="80508" i_length="782"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80507" e_stop="80209" e_length="299"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="80208" i_stop="80059" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="80058" e_stop="79179" e_length="880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84137" stop="84083"/>
              <exon start="83999" stop="83917"/>
              <exon start="83022" stop="82919"/>
              <exon start="81360" stop="81290"/>
              <exon start="80507" stop="80209"/>
              <exon start="80058" stop="79934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84136" stop="84083"/>
              <exon start="83999" stop="83917"/>
              <exon start="83022" stop="82919"/>
              <exon start="81360" stop="81290"/>
              <exon start="80507" stop="80209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="80209"/>
              <exon start="80058" stop="79179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAATACAG : CAATCATGCATTTGAAAATGCATGTATGGAGTTCGATGAAATGAAGTTGAAACCAACTTTTAGGATTCTTTGGGGAATACCAG : GACGGTCTAATGCAATCAATATAGCCGAAAGGCTCGGGATGCCTGATGCCATTGTGCATAAGGCTCGTGAACTTTATGGAGCTGCTAGTGCAGAAATCAATGAG : GTCATACTTGACATGGAGAGATTTAAGCAGAACTATCATGAGCAAGTTCGTGAGTCACAGCGTCTTCTTAA : GCTCACTAAAGGCCTCCATCATAAGTTGCTTATTGCCAGAAAAAATGTGAAAGAACACAGCATTAATCAAAGATTCAGAAAGGAACAGGAAATATTTGAAGCAGCTGCAGTAGCACGATCTTCCATTCAAAGGAGAGCACGACAATATCGTGCAATTTCTAGTCAACCATCCCAGAAAATATTGGGAAGTAATGGACCCACATCAACTATGAAAACTGAAGCTAAAGAGGAAAAAAGTAAAATTTCAGAAGCAACTCCTGCTGTGTACTACTCCAGTACATCCAGGTTGCCTCTTTCAG : CCAAGAGGAGGAAACTTCCCAATGTTGGTGACTCAGTCCACGTTCCTTCGCTTAACAAGCAAGCTTTAGTCCTGAAAGTCGATCCTTCTAGAGAAGAGCTTTTGGTACAAGCTGGTAACATGAAGCTTAAGCTTAAATTAACAGATGTATTGACCTGAAAGGTGCCTGCGCCAGGTAGGTTTTTCATTATCTCCGTCCTGCAGTGAGAAGGTGCCCTTGGGAATCTGGGACGCATTTGAAACCGCCTCTCGCCACCTGCAATTGGTATGACGGGACAGTTAAACTTGCTAAACATGAAGTAAGAATGGTCGTTGGTATATTTCCTTACTATCACGTTTTATAATAAATTAGTGCAATGAGCTCGGGATATATCGTATAGCCTGAGCATATATCCAGTTACCCGGGATGCATCTCATGCTATTTGACTAGGTACTCTCACAACTGACATCTAGCTTGCCCATAAGGAATTGTACTCAGTTTTAAGCTACACCGCTTTCACGATGTTATGGGTTTTTTTAAAAGGATGCCTCGAAGAGAAGGTTCCATCAGAAAATATGCACAATGTTGACCAGCTAGCTATAATTTTCAGTGAAGTGCATGGGGTCATATGCAAGGGAGTGTATCAGTCCAAACATGAGACCTCTTTGTCCTGCGGGCTATACTAAAATTATGGGAAACTTTTGATTGCCCTCGTTCAGGTACACTTGTATTTATTTGAGCTTGCTGGATTTGATTAAAGTCAACTACTAGATTCTGGATGACATCAGTTTATTTGAACTAGGTTGATGCCTTGATTGGAGTGTACTTATTAAATAGCTTCGTTGTGTACAAAAACGTACAGATTTTATACTTCTAAATGAAATTCAGATCTAGCTAATTA</gDNA_template>
            <first_frame> L  C  *  L  *  L  Q  H  I  M  E  N  L  K  P  L  N  T   : A  I  M  H  L  K  M  H  V  W  S  S  M  K  *  S  *  N  Q  L  L  G  F  F  G  E  Y  Q  :  D  G  L  M  Q  S  I  *  P  K  G  S  G  C  L  M  P  L  C  I  R  L  V  N  F  M  E  L  L  V  Q  K  S  M  R :   S  Y  L  T  W  R  D  L  S  R  T  I  M  S  K  F  V  S  H  S  V  F  L   : S  S  L  K  A  S  I  I  S  C  L  L  P  E  K  M  *  K  N  T  A  L  I  K  D  S  E  R  N  R  K  Y  L  K  Q  L  Q  *  H  D  L  P  F  K  G  E  H  D  N  I  V  Q  F  L  V  N  H  P  R  K  Y  W  E  V  M  D  P  H  Q  L  *  K  L  K  L  K  R  K  K  V  K  F  Q  K  Q  L  L  L  C  T  T  P  V  H  P  G  C  L  F  Q  :  P  R  G  G  N  F  P  M  L  V  T  Q  S  T  F  L  R  L  T  S  K  L  *  S  *  K  S  I  L  L  E  K  S  F  W  Y  K  L  V  T  *  S  L  S  L  N  *  Q  M  Y  *  P  E  R  C  L  R  Q  V  G  F  S  L  S  P  S  C  S  E  K  V  P  L  G  I  W  D  A  F  E  T  A  S  R  H  L  Q  L  V  *  R  D  S  *  T  C  *  T  *  S  K  N  G  R  W  Y  I  S  L  L  S  R  F  I  I  N  *  C  N  E  L  G  I  Y  R  I  A  *  A  Y  I  Q  L  P  G  M  H  L  M  L  F  D  *  V  L  S  Q  L  T  S  S  L  P  I  R  N  C  T  Q  F  *  A  T  P  L  S  R  C  Y  G  F  F  *  K  D  A  S  K  R  R  F  H  Q  K  I  C  T  M  L  T  S  *  L  *  F  S  V  K  C  M  G  S  Y  A  R  E  C  I  S  P  N  M  R  P  L  C  P  A  G  Y  T  K  I  M  G  N  F  *  L  P  S  F  R  Y  T  C  I  Y  L  S  L  L  D  L  I  K  V  N  Y  *  I  L  D  D  I  S  L  F  E  L  G  *  C  L  D  W  S  V  L  I  K  *  L  R  C  V  Q  K  R  T  D  F  I  L  L  N  E  I  Q  I  *  L  I  </first_frame>
            <second_frame>  F  V  D  Y  S  Y  N  T  S  W  R  T  *  N  P  *  I  Q  :  Q  S  C  I  *  K  C  M  Y  G  V  R  *  N  E  V  E  T  N  F  *  D  S  L  G  N  T  R :   T  V  *  C  N  Q  Y  S  R  K  A  R  D  A  *  C  H  C  A  *  G  S  *  T  L  W  S  C  *  C  R  N  Q  *   : G  H  T  *  H  G  E  I  *  A  E  L  S  *  A  S  S  *  V  T  A  S  S  *  :  A  H  *  R  P  P  S  *  V  A  Y  C  Q  K  K  C  E  R  T  Q  H  *  S  K  I  Q  K  G  T  G  N  I  *  S  S  C  S  S  T  I  F  H  S  K  E  S  T  T  I  S  C  N  F  *  S  T  I  P  E  N  I  G  K  *  W  T  H  I  N  Y  E  N  *  S  *  R  G  K  K  *  N  F  R  S  N  S  C  C  V  L  L  Q  Y  I  Q  V  A  S  F  S :   Q  E  E  E  T  S  Q  C  W  *  L  S  P  R  S  F  A  *  Q  A  S  F  S  P  E  S  R  S  F  *  R  R  A  F  G  T  S  W  *  H  E  A  *  A  *  I  N  R  C  I  D  L  K  G  A  C  A  R  *  V  F  H  Y  L  R  P  A  V  R  R  C  P  W  E  S  G  T  H  L  K  P  P  L  A  T  C  N  W  Y  D  G  T  V  K  L  A  K  H  E  V  R  M  V  V  G  I  F  P  Y  Y  H  V  L  *  *  I  S  A  M  S  S  G  Y  I  V  *  P  E  H  I  S  S  Y  P  G  C  I  S  C  Y  L  T  R  Y  S  H  N  *  H  L  A  C  P  *  G  I  V  L  S  F  K  L  H  R  F  H  D  V  M  G  F  F  K  R  M  P  R  R  E  G  S  I  R  K  Y  A  Q  C  *  P  A  S  Y  N  F  Q  *  S  A  W  G  H  M  Q  G  S  V  S  V  Q  T  *  D  L  F  V  L  R  A  I  L  K  L  W  E  T  F  D  C  P  R  S  G  T  L  V  F  I  *  A  C  W  I  *  L  K  S  T  T  R  F  W  M  T  S  V  Y  L  N  *  V  D  A  L  I  G  V  Y  L  L  N  S  F  V  V  Y  K  N  V  Q  I  L  Y  F  *  M  K  F  R  S  S  *  L </second_frame>
            <third_frame>   L  L  T  I  A  T  T  H  H  G  E  L  K  T  L  K  Y  S :   N  H  A  F  E  N  A  C  M  E  F  D  E  M  K  L  K  P  T  F  R  I  L  W  G  I  P   : G  R  S  N  A  I  N  I  A  E  R  L  G  M  P  D  A  I  V  H  K  A  R  E  L  Y  G  A  A  S  A  E  I  N  E  :  V  I  L  D  M  E  R  F  K  Q  N  Y  H  E  Q  V  R  E  S  Q  R  L  L  K :   L  T  K  G  L  H  H  K  L  L  I  A  R  K  N  V  K  E  H  S  I  N  Q  R  F  R  K  E  Q  E  I  F  E  A  A  A  V  A  R  S  S  I  Q  R  R  A  R  Q  Y  R  A  I  S  S  Q  P  S  Q  K  I  L  G  S  N  G  P  T  S  T  M  K  T  E  A  K  E  E  K  S  K  I  S  E  A  T  P  A  V  Y  Y  S  S  T  S  R  L  P  L  S   : A  K  R  R  K  L  P  N  V  G  D  S  V  H  V  P  S  L  N  K  Q  A  L  V  L  K  V  D  P  S  R  E  E  L  L  V  Q  A  G  N  M  K  L  K  L  K  L  T  D  V  L  T  *  K  V  P  A  P  G  R  F  F  I  I  S  V  L  Q  *  E  G  A  L  G  N  L  G  R  I  *  N  R  L  S  P  P  A  I  G  M  T  G  Q  L  N  L  L  N  M  K  *  E  W  S  L  V  Y  F  L  T  I  T  F  Y  N  K  L  V  Q  *  A  R  D  I  S  Y  S  L  S  I  Y  P  V  T  R  D  A  S  H  A  I  *  L  G  T  L  T  T  D  I  *  L  A  H  K  E  L  Y  S  V  L  S  Y  T  A  F  T  M  L  W  V  F  L  K  G  C  L  E  E  K  V  P  S  E  N  M  H  N  V  D  Q  L  A  I  I  F  S  E  V  H  G  V  I  C  K  G  V  Y  Q  S  K  H  E  T  S  L  S  C  G  L  Y  *  N  Y  G  K  L  L  I  A  L  V  Q  V  H  L  Y  L  F  E  L  A  G  F  D  *  S  Q  L  L  D  S  G  *  H  Q  F  I  *  T  R  L  M  P  *  L  E  C  T  Y  *  I  A  S  L  C  T  K  T  Y  R  F  Y  T  S  K  *  N  S  D  L  A  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84135" stop="84083"/>
                    <exon start="83999" stop="83917"/>
                    <exon start="83022" stop="82919"/>
                    <exon start="81360" stop="81290"/>
                    <exon start="80507" stop="80209"/>
                    <exon start="80058" stop="79901"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTIATTHHGELKTLKYSNHAFENACMEFDEMKLKPTFRILWGIPGRSNAINIAERLGMPDAIVHKARELYGAASAEINEVILDMERFKQNYHEQVRESQRLLKLTKGLHHKLLIARKNVKEHSINQRFRKEQEIFEAAAVARSSIQRRARQYRAISSQPSQKILGSNGPTSTMKTEAKEEKSKISEATPAVYYSSTSRLPLSAKRRKLPNVGDSVHVPSLNKQALVLKVDPSREELLVQAGNMKLKLKLTDVLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79606" stop="79394"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAHKELYSVLSYTAFTMLWVFLKGCLEEKVPSENMHNVDQLAIIFSEVHGVICKGVYQSKHETSLSCGLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="94185" PGL_stop="86312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94185" e_stop="93812"/>
            <exon e_start="93623" e_stop="93498"/>
            <exon e_start="93330" e_stop="93163"/>
            <exon e_start="93079" e_stop="92996"/>
            <exon e_start="92644" e_stop="92594"/>
            <exon e_start="91320" e_stop="91264"/>
            <exon e_start="91072" e_stop="90990"/>
            <exon e_start="89868" e_stop="89753"/>
            <exon e_start="89673" e_stop="89614"/>
            <exon e_start="88899" e_stop="88657"/>
            <exon e_start="87596" e_stop="87513"/>
            <exon e_start="87421" e_stop="87274"/>
            <exon e_start="86423" e_stop="86312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.997"/>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="0.980"/>
          <exon-intron don_prob="0.992" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.120" e_score="0.986"/>
          <exon-intron don_prob="0.989" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.775" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="94185" e_stop="93812" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="93811" i_stop="93624" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93623" e_stop="93498" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="93497" i_stop="93331" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93330" e_stop="93163" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93162" i_stop="93080" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93079" e_stop="92996" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.944">
            <gDNA_intron_boundary i_start="92995" i_stop="92645" i_length="351"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="92644" e_stop="92594" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="92593" i_stop="91321" i_length="1273"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91320" e_stop="91264" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.829">
            <gDNA_intron_boundary i_start="91263" i_stop="91073" i_length="191"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="91072" e_stop="90990" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.120">
            <gDNA_intron_boundary i_start="90989" i_stop="89869" i_length="1121"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89868" e_stop="89753" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.862">
            <gDNA_intron_boundary i_start="89752" i_stop="89674" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89673" e_stop="89614" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.877" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89613" i_stop="88900" i_length="714"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="88899" e_stop="88657" e_length="243"/>
          </exon>
          <intron i_serial="10" don_prob="0.932" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88656" i_stop="87597" i_length="1060"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="87596" e_stop="87513" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.970" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87512" i_stop="87422" i_length="91"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="87421" e_stop="87274" e_length="148"/>
          </exon>
          <intron i_serial="12" don_prob="0.966" acc_prob="0.775">
            <gDNA_intron_boundary i_start="87273" i_stop="86424" i_length="850"/>
          </intron>
          <exon e_serial="13" e_score="0.991">
            <gDNA_exon_boundary e_start="86423" e_stop="86312" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94185" stop="93812"/>
              <exon start="93623" stop="93498"/>
              <exon start="93330" stop="93163"/>
              <exon start="93079" stop="92996"/>
              <exon start="92644" stop="92594"/>
              <exon start="91320" stop="91264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94071" stop="93812"/>
              <exon start="93623" stop="93498"/>
              <exon start="93330" stop="93163"/>
              <exon start="93079" stop="92996"/>
              <exon start="92644" stop="92594"/>
              <exon start="91320" stop="91264"/>
              <exon start="91072" stop="91053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94062" stop="93812"/>
              <exon start="93623" stop="93498"/>
              <exon start="93330" stop="93163"/>
              <exon start="93079" stop="92996"/>
              <exon start="92644" stop="92594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91063" stop="90990"/>
              <exon start="89868" stop="89753"/>
              <exon start="89673" stop="89614"/>
              <exon start="88899" stop="88657"/>
              <exon start="87596" stop="87513"/>
              <exon start="87421" stop="87274"/>
              <exon start="86423" stop="86312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCGTGTCTCAATCTTACTGAAGTCTATCCCGTTTCCCGCAATCTCTCTCCCCGCCACTGGTGCTTTTGTCACTCTCTCTGCAAATCATCTGTTCCAATTATCCATTTTCAAATGCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAG : GAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTG : GTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATG : ATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCG : AGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAG : TTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTG : GAAGTGAGTGAAATTGATGGCAGATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAG : GTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAG : ATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTG : ATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACAGAAGGCCATAAAAGATGTCAAGAATGCCAATGCG : GAAATTAGGAGGAGGAAGCAGCAGGGAGGAAACTTTACTCTGAGAAAAGAAACTGATTTGACTTTACAGTCCTTGGAAGCAAAG : GTTGCTAAGTTGAAAGAGGAACCACCTGTTCCTGTTGACCTATATGTTGCGCACAACACTCGAGTTTTGGTTATAACTGGTCCTAATACTGGGGGTAAAACCATTTGCTTGAAGACTGTGGGTTTGGCTGCTTTGATGGCAAAATCCG : GTCTTTATGTGTTAGCATCAGAATCAGTGAAAATCCCTTGGTTTGATTTTGTATTTGCTGATATTGGTGATGAACAGTCCTTATCCCAATCACTGTCTACCTTCTCGGGCCA</gDNA_template>
            <first_frame> G  V  S  Q  S  Y  *  S  L  S  R  F  P  Q  S  L  S  P  P  L  V  L  L  S  L  S  L  Q  I  I  C  S  N  Y  P  F  S  N  A  *  C  S  S  Q  S  H  C  F  P  I  H  H  R  H  S  P  P  *  H  L  L  S  Q  K  F  P  A  V  S  G  S  P  F  E  S  R  S  M  P  S  *  T  N  H  W  N  R  A  P  I  N  H  R  *  F  *  T  V  S  G  S  S  N  G  T  N  Y  A  I  R  S  L  P  S  P  V  L  P  *  A  K  K  L  S  R :   N  N  *  V  I  *  I  K  H  L  K  R  V  L  D  S  *  R  K  P  M  R  L  W  R  *  I  S  T  V  P  W  W  I  L  M  A  L  I  L  S  W :   L  K  R  P  Y  G  L  H  A  M  V  F  L  S  V  G  L  K  H  *  M  L  *  H  Y  C  S  L  W  K  C  C  R  Q  M  S  K  L  Q  S  S  K  T  Q  N  G  I  S  V  L  C  L  S  Q  K  * :   L  W  N  *  P  *  A  N  H  *  *  G  S  Y  N  N  *  L  M  K  M  V  L  S  R  I  L  R :   A  L  L  *  N  N  L  V  I  K  F  A  F  L  K  E  S :   Y  T  S  *  W  K  T  *  S  G  T  A  W  K  K  H  L  L  W :   K  *  V  K  L  M  A  D  G  A  L  Y  Q  D  L  I  S  E  R  A  L  R  G  Y  C  Y  P   : G  T  G  S  V  L  E  P  L  S  A  V  P  L  N  D  A  L  Q  Q  A  K  A  S  V  S  K  A  E  V  D  V  L  L  K  I  T  Q  K  :  M  Q  E  E  I  D  Y  I  E  S  I  F  S  M  M  V  R  L  D  V  :  I  N  A  R  A  R  Y  G  L  A  F  G  G  A  C  P  D  L  F  L  Q  Q  E  Q  D  S  F  V  A  T  D  A  S  L  D  A  R  T  S  V  A  L  H  P  T  R  K  K  W  T  M  Y  L  P  K  A  Y  H  P  L  L  L  Q  K  H  Q  Q  A  L  Q  K  A  I  K  D  V  K  N  A  N  A  :  E  I  R  R  R  K  Q  Q  G  G  N  F  T  L  R  K  E  T  D  L  T  L  Q  S  L  E  A  K  :  V  A  K  L  K  E  E  P  P  V  P  V  D  L  Y  V  A  H  N  T  R  V  L  V  I  T  G  P  N  T  G  G  K  T  I  C  L  K  T  V  G  L  A  A  L  M  A  K  S   : G  L  Y  V  L  A  S  E  S  V  K  I  P  W  F  D  F  V  F  A  D  I  G  D  E  Q  S  L  S  Q  S  L  S  T  F  S  G   </first_frame>
            <second_frame>  A  C  L  N  L  T  E  V  Y  P  V  S  R  N  L  S  P  R  H  W  C  F  C  H  S  L  C  K  S  S  V  P  I  I  H  F  Q  M  H  D  A  P  L  S  L  T  A  S  Q  F  I  I  V  I  R  H  R  S  I  C  F  P  K  S  S  R  R  F  Q  A  V  H  S  N  Q  G  P  C  L  P  K  Q  T  T  G  I  E  L  R  S  T  I  G  D  S  R  Q  S  Q  G  P  R  M  G  Q  I  M  R  F  G  R  C  L  R  R  Y  F  L  R  Q  R  S  S  Q   : G  T  T  R  L  S  E  S  N  I  *  R  E  S  W  T  L  R  G  N  Q  C  G  C  G  D  E  *  V  R  C  H  G  G  F  *  W  H  *  Y  *  A   : G  *  N  G  H  T  G  C  T  P  W  F  S  C  Q  W  D  *  S  I  E  C  C  S  T  T  A  V  C  G  N  A  A  G  K  C  Q  S  C  S  Q  A  R  R  R  M  V  S  A  F  Y  A  S  H  R  N   : D  Y  G  T  N  H  K  Q  I  T  S  E  V  H  T  T  T  S  *  *  R  W  F  C  Q  G  F  C   : E  L  C  F  E  T  I  S  *  S  S  S  P  S  *  K  K   : V  I  P  V  D  G  K  H  N  Q  E  R  H  G  R  S  I  C  C   : G  S  E  *  N  *  W  Q  M  V  H  Y  I  R  I  *  S  A  N  E  L  *  G  A  T  V  I  Q  :  V  L  E  V  F  S  N  L  S  Q  Q  F  R  *  M  M  H  S  S  K  L  R  H  L  C  Q  R  L  R  L  M  C  S  *  R  *  H  R  R :   C  K  K  K  L  I  I  L  K  A  F  S  A  *  W  L  G  W  M  * :   S  T  L  E  H  D  M  V  L  H  L  E  V  L  V  L  I  Y  F  C  N  K  N  R  I  A  L  *  L  L  M  L  H  W  T  Q  E  P  Q  W  H  C  I  L  H  G  R  N  G  Q  C  I  C  Q  K  L  I  I  L  Y  Y  F  K  S  I  S  R  L  Y  R  R  P  *  K  M  S  R  M  P  M  R :   K  L  G  G  G  S  S  R  E  E  T  L  L  *  E  K  K  L  I  *  L  Y  S  P  W  K  Q  R :   L  L  S  *  K  R  N  H  L  F  L  L  T  Y  M  L  R  T  T  L  E  F  W  L  *  L  V  L  I  L  G  V  K  P  F  A  *  R  L  W  V  W  L  L  *  W  Q  N  P  :  V  F  M  C  *  H  Q  N  Q  *  K  S  L  G  L  I  L  Y  L  L  I  L  V  M  N  S  P  Y  P  N  H  C  L  P  S  R  A  </second_frame>
            <third_frame>   R  V  S  I  L  L  K  S  I  P  F  P  A  I  S  L  P  A  T  G  A  F  V  T  L  S  A  N  H  L  F  Q  L  S  I  F  K  C  M  M  L  L  S  V  S  L  L  P  N  S  S  S  S  F  A  T  V  A  F  A  F  P  K  V  P  G  G  F  R  Q  S  I  R  I  K  V  H  A  F  L  N  K  P  L  E  S  S  S  D  Q  P  S  V  I  L  D  S  L  R  V  L  E  W  D  K  L  C  D  S  V  A  A  F  A  G  T  S  L  G  K  E  A  L  K  :  E  Q  L  G  Y  L  N  Q  T  F  E  E  S  L  G  L  L  E  E  T  N  A  A  V  E  M  N  K  Y  G  A  M  V  D  F  N  G  I  D  I  E  L  :  V  K  T  A  I  R  V  A  R  H  G  F  P  V  S  G  T  E  A  L  N  V  V  A  L  L  Q  F  V  E  M  L  Q  A  N  V  K  A  A  V  K  Q  D  A  E  W  Y  Q  R  F  M  P  L  T  E  M  :  I  M  E  L  T  I  S  K  S  L  V  R  F  I  Q  Q  L  V  D  E  D  G  S  V  K  D  S  A  :  S  S  A  L  K  Q  S  R  D  Q  V  R  L  L  E  R  K  :  L  Y  Q  L  M  E  N  I  I  R  N  G  M  E  E  A  S  A  V  :  E  V  S  E  I  D  G  R  W  C  I  I  S  G  F  N  Q  R  T  S  F  E  G  L  L  L  S  R :   Y  W  K  C  S  R  T  S  L  S  S  S  V  E  *  C  T  P  A  S  *  G  I  C  V  K  G  *  G  *  C  A  P  E  D  N  T  E   : D  A  R  R  N  *  L  Y  *  K  H  F  Q  H  D  G  *  A  G  C   : D  Q  R  *  S  T  I  W  S  C  I  W  R  C  L  S  *  F  I  F  A  T  R  T  G  *  L  C  S  Y  *  C  F  T  G  R  K  N  L  S  G  I  A  S  Y  T  E  E  M  D  N  V  S  A  K  S  L  S  S  F  I  T  S  K  A  S  A  G  S  T  E  G  H  K  R  C  Q  E  C  Q  C   : G  N  *  E  E  E  A  A  G  R  K  L  Y  S  E  K  R  N  *  F  D  F  T  V  L  G  S  K   : G  C  *  V  E  R  G  T  T  C  S  C  *  P  I  C  C  A  Q  H  S  S  F  G  Y  N  W  S  *  Y  W  G  *  N  H  L  L  E  D  C  G  F  G  C  F  D  G  K  I  R :   S  L  C  V  S  I  R  I  S  E  N  P  L  V  *  F  C  I  C  *  Y  W  *  *  T  V  L  I  P  I  T  V  Y  L  L  G  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94183" stop="93812"/>
                    <exon start="93623" stop="93498"/>
                    <exon start="93330" stop="93163"/>
                    <exon start="93079" stop="92996"/>
                    <exon start="92644" stop="92594"/>
                    <exon start="91320" stop="91264"/>
                    <exon start="91072" stop="90990"/>
                    <exon start="89868" stop="89823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSILLKSIPFPAISLPATGAFVTLSANHLFQLSIFKCMMLLSVSLLPNSSSSFATVAFAFPKVPGGFRQSIRIKVHAFLNKPLESSSDQPSVILDSLRVLEWDKLCDSVAAFAGTSLGKEALKEQLGYLNQTFEESLGLLEETNAAVEMNKYGAMVDFNGIDIELVKTAIRVARHGFPVSGTEALNVVALLQFVEMLQANVKAAVKQDAEWYQRFMPLTEMIMELTISKSLVRFIQQLVDEDGSVKDSASSALKQSRDQVRLLERKLYQLMENIIRNGMEEASAVEVSEIDGRWCIISGFNQRTSFEGLLLSRYWKCSRTSLSSSVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94185" e_stop="93812"/>
            <exon e_start="93623" e_stop="93498"/>
            <exon e_start="93330" e_stop="93163"/>
            <exon e_start="93079" e_stop="92996"/>
            <exon e_start="92644" e_stop="92594"/>
            <exon e_start="91320" e_stop="91264"/>
            <exon e_start="91049" e_stop="90990"/>
            <exon e_start="89876" e_stop="89753"/>
            <exon e_start="89673" e_stop="89614"/>
            <exon e_start="88899" e_stop="88691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.997"/>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="94185" e_stop="93812" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="93811" i_stop="93624" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93623" e_stop="93498" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="93497" i_stop="93331" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93330" e_stop="93163" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93162" i_stop="93080" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93079" e_stop="92996" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.944">
            <gDNA_intron_boundary i_start="92995" i_stop="92645" i_length="351"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92644" e_stop="92594" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="92593" i_stop="91321" i_length="1273"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91320" e_stop="91264" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91263" i_stop="91050" i_length="214"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91049" e_stop="90990" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90989" i_stop="89877" i_length="1113"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89876" e_stop="89753" e_length="124"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.862">
            <gDNA_intron_boundary i_start="89752" i_stop="89674" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89673" e_stop="89614" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.877" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89613" i_stop="88900" i_length="714"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="88899" e_stop="88691" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94185" stop="93812"/>
              <exon start="93623" stop="93498"/>
              <exon start="93330" stop="93163"/>
              <exon start="93079" stop="92996"/>
              <exon start="92644" stop="92594"/>
              <exon start="91320" stop="91264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94062" stop="93812"/>
              <exon start="93623" stop="93498"/>
              <exon start="93330" stop="93163"/>
              <exon start="93079" stop="92996"/>
              <exon start="92644" stop="92594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93036" stop="92996"/>
              <exon start="92644" stop="92594"/>
              <exon start="91320" stop="91264"/>
              <exon start="91049" stop="90990"/>
              <exon start="89876" stop="89753"/>
              <exon start="89673" stop="89614"/>
              <exon start="88899" stop="88691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCGTGTCTCAATCTTACTGAAGTCTATCCCGTTTCCCGCAATCTCTCTCCCCGCCACTGGTGCTTTTGTCACTCTCTCTGCAAATCATCTGTTCCAATTATCCATTTTCAAATGCATGATGCTCCTCTCAGTCTCACTGCTTCCCAATTCATCATCGTCATTCGCCACCGTAGCATTTGCTTTCCCAAAAGTTCCCGGCGGTTTCAGGCAGTCCATTCGAATCAAGGTCCATGCCTTCCTAAACAAACCACTGGAATCGAGCTCCGATCAACCATCGGTGATTCTAGACAGTCTCAGGGTCCTCGAATGGGACAAATTATGCGATTCGGTCGCTGCCTTCGCCGGTACTTCCTTAGGCAAAGAAGCTCTCAAG : GAACAACTAGGTTATCTGAATCAAACATTTGAAGAGAGTCTTGGACTCTTAGAGGAAACCAATGCGGCTGTGGAGATGAATAAGTACGGTGCCATGGTGGATTTTAATGGCATTGATATTGAGCTG : GTTAAAACGGCCATACGGGTTGCACGCCATGGTTTTCCTGTCAGTGGGACTGAAGCATTGAATGTTGTAGCACTACTGCAGTTTGTGGAAATGCTGCAGGCAAATGTCAAAGCTGCAGTCAAGCAAGACGCAGAATGGTATCAGCGTTTTATGCCTCTCACAGAAATG : ATTATGGAACTAACCATAAGCAAATCACTAGTGAGGTTCATACAACAACTAGTTGATGAAGATGGTTCTGTCAAGGATTCTGCG : AGCTCTGCTTTGAAACAATCTCGTGATCAAGTTCGCCTTCTTGAAAGAAAG : TTATACCAGTTGATGGAAAACATAATCAGGAACGGCATGGAAGAAGCATCTGCTGTG : ATGGTGCATTATATCAGGATTTAATCAGCGAACGAGCTTTGAGGGGCTACTGTTATCCAG : TGCTTCAGGTACTGGAAGTGTTCTCGAACCTCTCTCAGCAGTTCCGTTGAATGATGCACTCCAGCAAGCTAAGGCATCTGTGTCAAAGGCTGAGGTTGATGTGCTCCTGAAGATAACACAGAAG : ATGCAAGAAGAAATTGATTATATTGAAAGCATTTTCAGCATGATGGTTAGGCTGGATGTG : ATCAACGCTAGAGCACGATATGGTCTTGCATTTGGAGGTGCTTGTCCTGATTTATTTTTGCAACAAGAACAGGATAGCTTTGTAGCTACTGATGCTTCACTGGACGCAAGAACCTCAGTGGCATTGCATCCTACACGGAAGAAATGGACAATGTATCTGCCAAAAGCTTATCATCCTTTATTACTTCAAAAGCATCAGCAGGCTCTACA</gDNA_template>
            <first_frame> G  V  S  Q  S  Y  *  S  L  S  R  F  P  Q  S  L  S  P  P  L  V  L  L  S  L  S  L  Q  I  I  C  S  N  Y  P  F  S  N  A  *  C  S  S  Q  S  H  C  F  P  I  H  H  R  H  S  P  P  *  H  L  L  S  Q  K  F  P  A  V  S  G  S  P  F  E  S  R  S  M  P  S  *  T  N  H  W  N  R  A  P  I  N  H  R  *  F  *  T  V  S  G  S  S  N  G  T  N  Y  A  I  R  S  L  P  S  P  V  L  P  *  A  K  K  L  S  R :   N  N  *  V  I  *  I  K  H  L  K  R  V  L  D  S  *  R  K  P  M  R  L  W  R  *  I  S  T  V  P  W  W  I  L  M  A  L  I  L  S  W :   L  K  R  P  Y  G  L  H  A  M  V  F  L  S  V  G  L  K  H  *  M  L  *  H  Y  C  S  L  W  K  C  C  R  Q  M  S  K  L  Q  S  S  K  T  Q  N  G  I  S  V  L  C  L  S  Q  K  * :   L  W  N  *  P  *  A  N  H  *  *  G  S  Y  N  N  *  L  M  K  M  V  L  S  R  I  L  R :   A  L  L  *  N  N  L  V  I  K  F  A  F  L  K  E  S :   Y  T  S  *  W  K  T  *  S  G  T  A  W  K  K  H  L  L  * :   W  C  I  I  S  G  F  N  Q  R  T  S  F  E  G  L  L  L  S  S :   A  S  G  T  G  S  V  L  E  P  L  S  A  V  P  L  N  D  A  L  Q  Q  A  K  A  S  V  S  K  A  E  V  D  V  L  L  K  I  T  Q  K  :  M  Q  E  E  I  D  Y  I  E  S  I  F  S  M  M  V  R  L  D  V  :  I  N  A  R  A  R  Y  G  L  A  F  G  G  A  C  P  D  L  F  L  Q  Q  E  Q  D  S  F  V  A  T  D  A  S  L  D  A  R  T  S  V  A  L  H  P  T  R  K  K  W  T  M  Y  L  P  K  A  Y  H  P  L  L  L  Q  K  H  Q  Q  A  L   </first_frame>
            <second_frame>  A  C  L  N  L  T  E  V  Y  P  V  S  R  N  L  S  P  R  H  W  C  F  C  H  S  L  C  K  S  S  V  P  I  I  H  F  Q  M  H  D  A  P  L  S  L  T  A  S  Q  F  I  I  V  I  R  H  R  S  I  C  F  P  K  S  S  R  R  F  Q  A  V  H  S  N  Q  G  P  C  L  P  K  Q  T  T  G  I  E  L  R  S  T  I  G  D  S  R  Q  S  Q  G  P  R  M  G  Q  I  M  R  F  G  R  C  L  R  R  Y  F  L  R  Q  R  S  S  Q   : G  T  T  R  L  S  E  S  N  I  *  R  E  S  W  T  L  R  G  N  Q  C  G  C  G  D  E  *  V  R  C  H  G  G  F  *  W  H  *  Y  *  A   : G  *  N  G  H  T  G  C  T  P  W  F  S  C  Q  W  D  *  S  I  E  C  C  S  T  T  A  V  C  G  N  A  A  G  K  C  Q  S  C  S  Q  A  R  R  R  M  V  S  A  F  Y  A  S  H  R  N   : D  Y  G  T  N  H  K  Q  I  T  S  E  V  H  T  T  T  S  *  *  R  W  F  C  Q  G  F  C   : E  L  C  F  E  T  I  S  *  S  S  S  P  S  *  K  K   : V  I  P  V  D  G  K  H  N  Q  E  R  H  G  R  S  I  C  C   : D  G  A  L  Y  Q  D  L  I  S  E  R  A  L  R  G  Y  C  Y  P   : V  L  Q  V  L  E  V  F  S  N  L  S  Q  Q  F  R  *  M  M  H  S  S  K  L  R  H  L  C  Q  R  L  R  L  M  C  S  *  R  *  H  R  R :   C  K  K  K  L  I  I  L  K  A  F  S  A  *  W  L  G  W  M  * :   S  T  L  E  H  D  M  V  L  H  L  E  V  L  V  L  I  Y  F  C  N  K  N  R  I  A  L  *  L  L  M  L  H  W  T  Q  E  P  Q  W  H  C  I  L  H  G  R  N  G  Q  C  I  C  Q  K  L  I  I  L  Y  Y  F  K  S  I  S  R  L  Y  </second_frame>
            <third_frame>   R  V  S  I  L  L  K  S  I  P  F  P  A  I  S  L  P  A  T  G  A  F  V  T  L  S  A  N  H  L  F  Q  L  S  I  F  K  C  M  M  L  L  S  V  S  L  L  P  N  S  S  S  S  F  A  T  V  A  F  A  F  P  K  V  P  G  G  F  R  Q  S  I  R  I  K  V  H  A  F  L  N  K  P  L  E  S  S  S  D  Q  P  S  V  I  L  D  S  L  R  V  L  E  W  D  K  L  C  D  S  V  A  A  F  A  G  T  S  L  G  K  E  A  L  K  :  E  Q  L  G  Y  L  N  Q  T  F  E  E  S  L  G  L  L  E  E  T  N  A  A  V  E  M  N  K  Y  G  A  M  V  D  F  N  G  I  D  I  E  L  :  V  K  T  A  I  R  V  A  R  H  G  F  P  V  S  G  T  E  A  L  N  V  V  A  L  L  Q  F  V  E  M  L  Q  A  N  V  K  A  A  V  K  Q  D  A  E  W  Y  Q  R  F  M  P  L  T  E  M  :  I  M  E  L  T  I  S  K  S  L  V  R  F  I  Q  Q  L  V  D  E  D  G  S  V  K  D  S  A  :  S  S  A  L  K  Q  S  R  D  Q  V  R  L  L  E  R  K  :  L  Y  Q  L  M  E  N  I  I  R  N  G  M  E  E  A  S  A  V  :  M  V  H  Y  I  R  I  *  S  A  N  E  L  *  G  A  T  V  I  Q  :  C  F  R  Y  W  K  C  S  R  T  S  L  S  S  S  V  E  *  C  T  P  A  S  *  G  I  C  V  K  G  *  G  *  C  A  P  E  D  N  T  E   : D  A  R  R  N  *  L  Y  *  K  H  F  Q  H  D  G  *  A  G  C   : D  Q  R  *  S  T  I  W  S  C  I  W  R  C  L  S  *  F  I  F  A  T  R  T  G  *  L  C  S  Y  *  C  F  T  G  R  K  N  L  S  G  I  A  S  Y  T  E  E  M  D  N  V  S  A  K  S  L  S  S  F  I  T  S  K  A  S  A  G  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94183" stop="93812"/>
                    <exon start="93623" stop="93498"/>
                    <exon start="93330" stop="93163"/>
                    <exon start="93079" stop="92996"/>
                    <exon start="92644" stop="92594"/>
                    <exon start="91320" stop="91264"/>
                    <exon start="91049" stop="91026"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSILLKSIPFPAISLPATGAFVTLSANHLFQLSIFKCMMLLSVSLLPNSSSSFATVAFAFPKVPGGFRQSIRIKVHAFLNKPLESSSDQPSVILDSLRVLEWDKLCDSVAAFAGTSLGKEALKEQLGYLNQTFEESLGLLEETNAAVEMNKYGAMVDFNGIDIELVKTAIRVARHGFPVSGTEALNVVALLQFVEMLQANVKAAVKQDAEWYQRFMPLTEMIMELTISKSLVRFIQQLVDEDGSVKDSASSALKQSRDQVRLLERKLYQLMENIIRNGMEEASAVMVHYIRI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91048" stop="90990"/>
                    <exon start="89876" stop="89753"/>
                    <exon start="89673" stop="89614"/>
                    <exon start="88899" stop="88693"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WCIISGFNQRTSFEGLLLSSASGTGSVLEPLSAVPLNDALQQAKASVSKAEVDVLLKITQKMQEEIDYIESIFSMMVRLDVINARARYGLAFGGACPDLFLQQEQDSFVATDASLDARTSVALHPTRKKWTMYLPKAYHPLLLQKHQQAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="86831" PGL_stop="87353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86831" e_stop="87353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86831" e_stop="87353" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86831" stop="87353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343703" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACCTAGTGGAAAGGCTGAGGCGTGTTAGTTGGCCTTGACACCATCTTCACGAAAAAAATTTCAAAAAACTTGTGAAGTTGCAGGTCGTAATGGAGGATGAGTTTGTGTTTGTATAAGTAGCATATGATTTATGAAGGAACAAGAAACATGACCAGGAAAAACCGATTTAATAATTTGGCGGGAATCCTAATTCAACAATAGATGATATCAAGGCATAGAAATGAAAATGGATGTGAATGTCAGGAAAGTAAATTTAAGCACGTTTCAACTTATTGATAGGTTCTCAATTGCCTCTTTGCATAGGATAGTGGTAACTGATGACTTTTGATGTTTTAATATATAATGTCTAGTAGATATATTGAGGTACAAGGAAAGTTTTCATTTGTGAGTTGACTTGATGAACAAAGTATAATGTATAAATATATAGTACTTGTGCTGACCGGATTTTGCCATCAAAGCAGCCAAACCCACAGTCTTCAAGCAAATGGTTTTACCCCCAGTATTAGGACCAGTTATAACC</gDNA_template>
            <first_frame> C  T  *  W  K  G  *  G  V  L  V  G  L  D  T  I  F  T  K  K  I  S  K  N  L  *  S  C  R  S  *  W  R  M  S  L  C  L  Y  K  *  H  M  I  Y  E  G  T  R  N  M  T  R  K  N  R  F  N  N  L  A  G  I  L  I  Q  Q  *  M  I  S  R  H  R  N  E  N  G  C  E  C  Q  E  S  K  F  K  H  V  S  T  Y  *  *  V  L  N  C  L  F  A  *  D  S  G  N  *  *  L  L  M  F  *  Y  I  M  S  S  R  Y  I  E  V  Q  G  K  F  S  F  V  S  *  L  D  E  Q  S  I  M  Y  K  Y  I  V  L  V  L  T  G  F  C  H  Q  S  S  Q  T  H  S  L  Q  A  N  G  F  T  P  S  I  R  T  S  Y  N  </first_frame>
            <second_frame>  V  P  S  G  K  A  E  A  C  *  L  A  L  T  P  S  S  R  K  K  F  Q  K  T  C  E  V  A  G  R  N  G  G  *  V  C  V  C  I  S  S  I  *  F  M  K  E  Q  E  T  *  P  G  K  T  D  L  I  I  W  R  E  S  *  F  N  N  R  *  Y  Q  G  I  E  M  K  M  D  V  N  V  R  K  V  N  L  S  T  F  Q  L  I  D  R  F  S  I  A  S  L  H  R  I  V  V  T  D  D  F  *  C  F  N  I  *  C  L  V  D  I  L  R  Y  K  E  S  F  H  L  *  V  D  L  M  N  K  V  *  C  I  N  I  *  Y  L  C  *  P  D  F  A  I  K  A  A  K  P  T  V  F  K  Q  M  V  L  P  P  V  L  G  P  V  I  T </second_frame>
            <third_frame>   Y  L  V  E  R  L  R  R  V  S  W  P  *  H  H  L  H  E  K  N  F  K  K  L  V  K  L  Q  V  V  M  E  D  E  F  V  F  V  *  V  A  Y  D  L  *  R  N  K  K  H  D  Q  E  K  P  I  *  *  F  G  G  N  P  N  S  T  I  D  D  I  K  A  *  K  *  K  W  M  *  M  S  G  K  *  I  *  A  R  F  N  L  L  I  G  S  Q  L  P  L  C  I  G  *  W  *  L  M  T  F  D  V  L  I  Y  N  V  *  *  I  Y  *  G  T  R  K  V  F  I  C  E  L  T  *  *  T  K  Y  N  V  *  I  Y  S  T  C  A  D  R  I  L  P  S  K  Q  P  N  P  Q  S  S  S  K  W  F  Y  P  Q  Y  *  D  Q  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0025K18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="94466" PGL_stop="94913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94466" e_stop="94913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="94466" e_stop="94913" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94466" stop="94787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94466" stop="94771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94467" stop="94913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAGAAAATATATGTTTTTCTCGCTTTATACAAAAATAGAAACACAATATATACACCTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGATACAGAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGAGAGCGAGATTTTTGGGAGAGAGACGTTGGGAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAA</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  F  I  A  R  K  Y  M  F  F  S  L  Y  T  K  I  E  T  Q  Y  I  H  L  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  C  F  I  Q  N  R  Y  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  E  S  E  I  F  G  R  E  T  L  G  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  L  *  Q  E  N  I  C  F  S  R  F  I  Q  K  *  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  D  T  E  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  E  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  P  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  L  L  Y  T  K  Q  I  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  V  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94653" stop="94913"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYTFLHVYIQFSLALYKTDTELYTFVYKAREASENGEWRARFLGERRWEILANVCYGAQLNQTLAIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="98834" PGL_stop="100631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98834" e_stop="99260"/>
            <exon e_start="100396" e_stop="100607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98834" e_stop="99260" e_length="427"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99261" i_stop="100395" i_length="1135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100396" e_stop="100607" e_length="212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98834" stop="99129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98856" stop="99092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98906" stop="99260"/>
              <exon start="100396" stop="100607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313992" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTAAACTTGTCATCCAACAAAAACAGCAAGTTTTTCAATTCATCCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTG : GATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTA</gDNA_template>
            <first_frame> *  L  N  L  S  S  N  K  N  S  K  F  F  N  S  S  N  P  C  F  Q  S  S  Q  F  N  P  N  S  Q  I  *  G  S  I  F  L  I  F  H  L  F  Q  S  E  T  L  T  G  Q  S  V  M  G  D  E  N  G  L  P  N  S  S  P  N  H  S  I  F  R  Y  N  S  P  L  V  Q  V  C  L  I  G  L  V  C  F  C  C  P  G  M  F  N  A  L  S  G  M  G  G  G  G  Q  V  D  H  T  A  S  N  N  A  N  T  A  L  Y  T  A  F  T  I  F  G  I  L  G  G  G  I  Y  N  I  L  G  P  K  K  T  L  F  I   : G  *  Q  Q  R  *  R  G  S  N  *  G  S  L  H  Y  F  K  P  R  H  *  Y  Y  S  R  L  P  Q  *  G  I  R  N  S  L  Q  N  L  *  F  S  H  Y  Y  H  S  R  V  *  R  T  V  L  *  I  V  D  Y  Q  P  Q  *  N  F  F  A  N  V  Y  L </first_frame>
            <second_frame>  N  *  T  C  H  P  T  K  T  A  S  F  S  I  H  P  I  L  A  S  K  V  P  N  L  I  Q  I  P  K  F  E  D  L  F  F  S  S  F  I  C  F  N  L  R  L  S  Q  A  K  A  L  W  E  M  K  M  V  Y  L  I  H  L  R  T  I  Q  F  S  G  T  I  R  H  W  F  R  F  V  *  L  D  *  Y  V  F  V  V  Q  G  C  S  M  R  S  L  E  W  V  V  V  V  K  S  T  T  R  R  L  T  T  P  T  P  H  S  T  Q  L  S  L  F  L  G  Y  W  V  V  E  F  T  T  F  *  V  Q  K  R  L  C  L  L  :  D  D  N  K  D  E  E  G  A  T  K  E  A  S  I  T  S  N  R  D  I  S  T  T  V  D  Y  P  N  K  E  *  G  I  V  Y  R  I  Y  N  L  V  I  T  T  I  V  E  F  K  E  L  F  C  K  L  W  T  I  N  H  S  E  I  S  L  L  M  F  I   </second_frame>
            <third_frame>   I  K  L  V  I  Q  Q  K  Q  Q  V  F  Q  F  I  Q  S  L  L  P  K  F  P  I  *  S  K  F  P  N  L  R  I  Y  F  S  H  L  S  S  V  S  I  *  D  S  H  R  P  K  R  Y  G  R  *  K  W  F  T  *  F  I  S  E  P  F  N  F  Q  V  Q  F  A  T  G  S  G  L  F  D  W  I  S  M  F  L  L  S  R  D  V  Q  C  A  L  W  N  G  W  W  W  S  S  R  P  H  G  V  *  Q  R  Q  H  R  T  L  H  S  F  H  Y  F  W  D  I  G  W  W  N  L  Q  H  F  R  S  K  K  D  S  V  Y  W :   M  T  T  K  M  K  R  E  Q  L  R  K  P  P  L  L  Q  T  A  T  L  V  L  Q  *  T  T  P  I  R  N  K  E  *  F  T  E  F  I  I  *  S  L  L  P  *  *  S  L  K  N  C  S  V  N  C  G  L  S  T  T  V  K  F  L  C  *  C  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98930" stop="99260"/>
                    <exon start="100396" stop="100400"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSIFLIFHLFQSETLTGQSVMGDENGLPNSSPNHSIFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDHTASNNANTALYTAFTIFGILGGGIYNILGPKKTLFIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98834" e_stop="99275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="98834" e_stop="99275" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98834" stop="99129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98856" stop="99092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98906" stop="99275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313993" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTAAACTTGTCATCCAACAAAAACAGCAAGTTTTTCAATTCATCCAATCCTTGCTTCCAAAGTTCCCAATTTAATCCAAATTCCCAAATTTGAGGATCTATTTTTCTCATCTTTCATCTGTTTCAATCTGAGACTCTCACAGGCCAAAGCGTTATGGGAGATGAAAATGGTTTACCTAATTCATCTCCGAACCATTCAATTTTCAGGTACAATTCGCCACTGGTTCAGGTTTGTTTGATTGGATTAGTATGTTTTTGTTGTCCAGGGATGTTCAATGCGCTCTCTGGAATGGGTGGTGGTGGTCAAGTCGACCACACGGCGTCTAACAACGCCAACACCGCACTCTACACAGCTTTCACTATTTTTGGGATATTGGGTGGTGGAATTTACAACATTTTAGGTCCAAAAAAGACTCTGTTTATTGGGTGTTCAACTTATA</gDNA_template>
            <first_frame> *  L  N  L  S  S  N  K  N  S  K  F  F  N  S  S  N  P  C  F  Q  S  S  Q  F  N  P  N  S  Q  I  *  G  S  I  F  L  I  F  H  L  F  Q  S  E  T  L  T  G  Q  S  V  M  G  D  E  N  G  L  P  N  S  S  P  N  H  S  I  F  R  Y  N  S  P  L  V  Q  V  C  L  I  G  L  V  C  F  C  C  P  G  M  F  N  A  L  S  G  M  G  G  G  G  Q  V  D  H  T  A  S  N  N  A  N  T  A  L  Y  T  A  F  T  I  F  G  I  L  G  G  G  I  Y  N  I  L  G  P  K  K  T  L  F  I  G  C  S  T  Y  </first_frame>
            <second_frame>  N  *  T  C  H  P  T  K  T  A  S  F  S  I  H  P  I  L  A  S  K  V  P  N  L  I  Q  I  P  K  F  E  D  L  F  F  S  S  F  I  C  F  N  L  R  L  S  Q  A  K  A  L  W  E  M  K  M  V  Y  L  I  H  L  R  T  I  Q  F  S  G  T  I  R  H  W  F  R  F  V  *  L  D  *  Y  V  F  V  V  Q  G  C  S  M  R  S  L  E  W  V  V  V  V  K  S  T  T  R  R  L  T  T  P  T  P  H  S  T  Q  L  S  L  F  L  G  Y  W  V  V  E  F  T  T  F  *  V  Q  K  R  L  C  L  L  G  V  Q  L  I </second_frame>
            <third_frame>   I  K  L  V  I  Q  Q  K  Q  Q  V  F  Q  F  I  Q  S  L  L  P  K  F  P  I  *  S  K  F  P  N  L  R  I  Y  F  S  H  L  S  S  V  S  I  *  D  S  H  R  P  K  R  Y  G  R  *  K  W  F  T  *  F  I  S  E  P  F  N  F  Q  V  Q  F  A  T  G  S  G  L  F  D  W  I  S  M  F  L  L  S  R  D  V  Q  C  A  L  W  N  G  W  W  W  S  S  R  P  H  G  V  *  Q  R  Q  H  R  T  L  H  S  F  H  Y  F  W  D  I  G  W  W  N  L  Q  H  F  R  S  K  K  D  S  V  Y  W  V  F  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98930" stop="99274"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSIFLIFHLFQSETLTGQSVMGDENGLPNSSPNHSIFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDHTASNNANTALYTAFTIFGILGGGIYNILGPKKTLFIGCSTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="100031" e_stop="100146"/>
            <exon e_start="100236" e_stop="100631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100031" e_stop="100146" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100147" i_stop="100235" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100236" e_stop="100631" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100031" stop="100146"/>
              <exon start="100236" stop="100631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100031" stop="100146"/>
              <exon start="100236" stop="100622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTGCAGGTCCATTCTTGTTGTATTTTAGTTATGGATTACTCGATGCCATGTTTCAGAGCATGGTCTATTGGGTTATAGGAGCCTTGGCAGATGATTCTGAGGTTCTCAGCAG : ATATACTGGCTTCTATAAAGGAATACAAAGTGCAGGTGCAGCCGTTGCTTGGCAAGTGGATTCACATACTGTCCCATTCATGAACCAGCTTATCGCGAATTGGGCATTAACAACCATTAGTTTTCCATTACTGGTAGCTCTTGTAGTGTTAGCTGTGAAGGATGACAACAAAGATGAAGAGGGAGCAACTAAGGAAGCCTCCATTACTTCAAACCGCGACATTAGTACTACAGTAGACTACCCCAATAAGGAATAAGGAATAGTTTACAGAATTTATAATTTAGTCATTACTACCATAGTAGAGTTTAAAGAACTGTTCTGTAAATTGTGGACTATCAACCACAGTGAAATTTCTTTGCTAATGTTTATTTAATCGTCTTCATTCTCCAGTAAATT</gDNA_template>
            <first_frame> K  F  A  G  P  F  L  L  Y  F  S  Y  G  L  L  D  A  M  F  Q  S  M  V  Y  W  V  I  G  A  L  A  D  D  S  E  V  L  S  R :   Y  T  G  F  Y  K  G  I  Q  S  A  G  A  A  V  A  W  Q  V  D  S  H  T  V  P  F  M  N  Q  L  I  A  N  W  A  L  T  T  I  S  F  P  L  L  V  A  L  V  V  L  A  V  K  D  D  N  K  D  E  E  G  A  T  K  E  A  S  I  T  S  N  R  D  I  S  T  T  V  D  Y  P  N  K  E  *  G  I  V  Y  R  I  Y  N  L  V  I  T  T  I  V  E  F  K  E  L  F  C  K  L  W  T  I  N  H  S  E  I  S  L  L  M  F  I  *  S  S  S  F  S  S  K   </first_frame>
            <second_frame>  N  L  Q  V  H  S  C  C  I  L  V  M  D  Y  S  M  P  C  F  R  A  W  S  I  G  L  *  E  P  W  Q  M  I  L  R  F  S  A   : D  I  L  A  S  I  K  E  Y  K  V  Q  V  Q  P  L  L  G  K  W  I  H  I  L  S  H  S  *  T  S  L  S  R  I  G  H  *  Q  P  L  V  F  H  Y  W  *  L  L  *  C  *  L  *  R  M  T  T  K  M  K  R  E  Q  L  R  K  P  P  L  L  Q  T  A  T  L  V  L  Q  *  T  T  P  I  R  N  K  E  *  F  T  E  F  I  I  *  S  L  L  P  *  *  S  L  K  N  C  S  V  N  C  G  L  S  T  T  V  K  F  L  C  *  C  L  F  N  R  L  H  S  P  V  N  </second_frame>
            <third_frame>   I  C  R  S  I  L  V  V  F  *  L  W  I  T  R  C  H  V  S  E  H  G  L  L  G  Y  R  S  L  G  R  *  F  *  G  S  Q  Q  :  I  Y  W  L  L  *  R  N  T  K  C  R  C  S  R  C  L  A  S  G  F  T  Y  C  P  I  H  E  P  A  Y  R  E  L  G  I  N  N  H  *  F  S  I  T  G  S  S  C  S  V  S  C  E  G  *  Q  Q  R  *  R  G  S  N  *  G  S  L  H  Y  F  K  P  R  H  *  Y  Y  S  R  L  P  Q  *  G  I  R  N  S  L  Q  N  L  *  F  S  H  Y  Y  H  S  R  V  *  R  T  V  L  *  I  V  D  Y  Q  P  Q  *  N  F  F  A  N  V  Y  L  I  V  F  I  L  Q  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100031" stop="100146"/>
                    <exon start="100236" stop="100491"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFAGPFLLYFSYGLLDAMFQSMVYWVIGALADDSEVLSRYTGFYKGIQSAGAAVAWQVDSHTVPFMNQLIANWALTTISFPLLVALVVLAVKDDNKDEEGATKEASITSNRDISTTVDYPNKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="107106" PGL_stop="107961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107106" e_stop="107833"/>
            <exon e_start="107952" e_stop="107961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.857" e_score="0.982"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="107106" e_stop="107833" e_length="728"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="107834" i_stop="107951" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.700">
            <gDNA_exon_boundary e_start="107952" e_stop="107961" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107106" stop="107833"/>
              <exon start="107952" stop="107961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107106" stop="107553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107107" stop="107460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107109" stop="107544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107119" stop="107303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107122" stop="107824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGAGATACTTTACCTTTGATCATCGGAAATCCCCAAAATTTCAATTCTCGGGTTTTCGATTTCTTCAACTAGGTTTTCTGTTAAAAGAGAAAGGCGAGCTTTTCTTCTATATTCTAAGAAAGGCTCGCCGGAAAAAAAATTTAAACAAATATAGTATCCATGGAATTTCTTAGAATTTCTGCTTTTCAACCTATCTTCGTGTTCCTGCTCATCTCTGTCATCTACTTCCCGGTCACCGTCCGTTCAGATGAAATCATCCCGCTTCTGTTGCCTTCCGAACAAGTGAATCAAGACATTTGCCCTACGACGCCGTCTCCGTCGGAATCCTGCCCTATTAATTGCTTCCGACCCGACCCGGTCTGCGGTGTTAACGGTGTGACGTACTGGTGTGGTTGCCCCGACGCACATTGTGCTGGTGTGCGTGTTGTGAAATCAGGGATCTGTGAGGTGGGAAACGGAGGTTCTGCTCCGGTTACGGGTCAAGCGCTATTGTTGATTCACATTGTTTGGCTTGTGTTACTTGGTTTCGTCGGGCTGTTTGGGCTGCTATGATCGATCAGGTTTCGTTGATTGCTTGATTTAGGGTTAGACTTGATAGGATGATTTTTTTTGTATAACATACCTGTAACTTCTGTATGTATGAGGGGAATATACGGCTAGATGATTTCAACTGTGTCCTTGTTTTTCTTTTGTTCGATTAATACAATTTTAGGAGATTTAGAT : AGAAACAAAG</gDNA_template>
            <first_frame> K  K  E  I  L  Y  L  *  S  S  E  I  P  K  I  S  I  L  G  F  S  I  S  S  T  R  F  S  V  K  R  E  R  R  A  F  L  L  Y  S  K  K  G  S  P  E  K  K  F  K  Q  I  *  Y  P  W  N  F  L  E  F  L  L  F  N  L  S  S  C  S  C  S  S  L  S  S  T  S  R  S  P  S  V  Q  M  K  S  S  R  F  C  C  L  P  N  K  *  I  K  T  F  A  L  R  R  R  L  R  R  N  P  A  L  L  I  A  S  D  P  T  R  S  A  V  L  T  V  *  R  T  G  V  V  A  P  T  H  I  V  L  V  C  V  L  *  N  Q  G  S  V  R  W  E  T  E  V  L  L  R  L  R  V  K  R  Y  C  *  F  T  L  F  G  L  C  Y  L  V  S  S  G  C  L  G  C  Y  D  R  S  G  F  V  D  C  L  I  *  G  *  T  *  *  D  D  F  F  C  I  T  Y  L  *  L  L  Y  V  *  G  E  Y  T  A  R  *  F  Q  L  C  P  C  F  S  F  V  R  L  I  Q  F  *  E  I  *  I :   E  T  K </first_frame>
            <second_frame>  K  K  R  Y  F  T  F  D  H  R  K  S  P  K  F  Q  F  S  G  F  R  F  L  Q  L  G  F  L  L  K  E  K  G  E  L  F  F  Y  I  L  R  K  A  R  R  K  K  N  L  N  K  Y  S  I  H  G  I  S  *  N  F  C  F  S  T  Y  L  R  V  P  A  H  L  C  H  L  L  P  G  H  R  P  F  R  *  N  H  P  A  S  V  A  F  R  T  S  E  S  R  H  L  P  Y  D  A  V  S  V  G  I  L  P  Y  *  L  L  P  T  R  P  G  L  R  C  *  R  C  D  V  L  V  W  L  P  R  R  T  L  C  W  C  A  C  C  E  I  R  D  L  *  G  G  K  R  R  F  C  S  G  Y  G  S  S  A  I  V  D  S  H  C  L  A  C  V  T  W  F  R  R  A  V  W  A  A  M  I  D  Q  V  S  L  I  A  *  F  R  V  R  L  D  R  M  I  F  F  V  *  H  T  C  N  F  C  M  Y  E  G  N  I  R  L  D  D  F  N  C  V  L  V  F  L  L  F  D  *  Y  N  F  R  R  F  R   : *  K  Q   </second_frame>
            <third_frame>   K  R  D  T  L  P  L  I  I  G  N  P  Q  N  F  N  S  R  V  F  D  F  F  N  *  V  F  C  *  K  R  K  A  S  F  S  S  I  F  *  E  R  L  A  G  K  K  I  *  T  N  I  V  S  M  E  F  L  R  I  S  A  F  Q  P  I  F  V  F  L  L  I  S  V  I  Y  F  P  V  T  V  R  S  D  E  I  I  P  L  L  L  P  S  E  Q  V  N  Q  D  I  C  P  T  T  P  S  P  S  E  S  C  P  I  N  C  F  R  P  D  P  V  C  G  V  N  G  V  T  Y  W  C  G  C  P  D  A  H  C  A  G  V  R  V  V  K  S  G  I  C  E  V  G  N  G  G  S  A  P  V  T  G  Q  A  L  L  L  I  H  I  V  W  L  V  L  L  G  F  V  G  L  F  G  L  L  *  S  I  R  F  R  *  L  L  D  L  G  L  D  L  I  G  *  F  F  L  Y  N  I  P  V  T  S  V  C  M  R  G  I  Y  G  *  M  I  S  T  V  S  L  F  F  F  C  S  I  N  T  I  L  G  D  L  D  :  R  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107255" stop="107662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNIVSMEFLRISAFQPIFVFLLISVIYFPVTVRSDEIIPLLLPSEQVNQDICPTTPSPSESCPINCFRPDPVCGVNGVTYWCGCPDAHCAGVRVVKSGICEVGNGGSAPVTGQALLLIHIVWLVLLGFVGLFGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="109400" PGL_stop="109859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109400" e_stop="109859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="109400" e_stop="109859" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109400" stop="109859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGTTCTTTAACTGAGCATTCAAAGATGATCGTCTCATGGTATTATATTTATTCAAAAAAGAATGAGTTCATTTCCTGGAGCACAAAACAGGTTATTGAACAATGAAACTTTTCTGTCATTAGTTTGAGTCTCCAGAAAAACGTATGTAAAAAAAGCATATAAAAGTGGCGACTGAAAAGTACATGTTTCCCACACGCTTTAAAGTTCTCCAAACAATAAACCTCTGGAAATGCATCATCCTTCAAAATTTGAAGGAGAGTCGATCAGTATAATGACCCCTAACTACCACTTTTTCCATTTCAATTTTTTACTACCACTTTTCTACTTTCCAAGAAGCCTCATCCAGAACTCAGCAGCCGTTGTCAGAAAAAAGAGTTGTCACCAAAATGATGCATGCAAGTCAGAGCTCTACGCCAAAAGAATAGGCACTCTTTATCATTGCCAAATTATCTACTCA</gDNA_template>
            <first_frame> Q  S  S  L  T  E  H  S  K  M  I  V  S  W  Y  Y  I  Y  S  K  K  N  E  F  I  S  W  S  T  K  Q  V  I  E  Q  *  N  F  S  V  I  S  L  S  L  Q  K  N  V  C  K  K  S  I  *  K  W  R  L  K  S  T  C  F  P  H  A  L  K  F  S  K  Q  *  T  S  G  N  A  S  S  F  K  I  *  R  R  V  D  Q  Y  N  D  P  *  L  P  L  F  P  F  Q  F  F  T  T  T  F  L  L  S  K  K  P  H  P  E  L  S  S  R  C  Q  K  K  E  L  S  P  K  *  C  M  Q  V  R  A  L  R  Q  K  N  R  H  S  L  S  L  P  N  Y  L  L  </first_frame>
            <second_frame>  R  V  L  *  L  S  I  Q  R  *  S  S  H  G  I  I  F  I  Q  K  R  M  S  S  F  P  G  A  Q  N  R  L  L  N  N  E  T  F  L  S  L  V  *  V  S  R  K  T  Y  V  K  K  A  Y  K  S  G  D  *  K  V  H  V  S  H  T  L  *  S  S  P  N  N  K  P  L  E  M  H  H  P  S  K  F  E  G  E  S  I  S  I  M  T  P  N  Y  H  F  F  H  F  N  F  L  L  P  L  F  Y  F  P  R  S  L  I  Q  N  S  A  A  V  V  R  K  K  S  C  H  Q  N  D  A  C  K  S  E  L  Y  A  K  R  I  G  T  L  Y  H  C  Q  I  I  Y  S </second_frame>
            <third_frame>   E  F  F  N  *  A  F  K  D  D  R  L  M  V  L  Y  L  F  K  K  E  *  V  H  F  L  E  H  K  T  G  Y  *  T  M  K  L  F  C  H  *  F  E  S  P  E  K  R  M  *  K  K  H  I  K  V  A  T  E  K  Y  M  F  P  T  R  F  K  V  L  Q  T  I  N  L  W  K  C  I  I  L  Q  N  L  K  E  S  R  S  V  *  *  P  L  T  T  T  F  S  I  S  I  F  Y  Y  H  F  S  T  F  Q  E  A  S  S  R  T  Q  Q  P  L  S  E  K  R  V  V  T  K  M  M  H  A  S  Q  S  S  T  P  K  E  *  A  L  F  I  I  A  K  L  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109605" stop="109859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPNNKPLEMHHPSKFEGESISIMTPNYHFFHFNFLLPLFYFPRSLIQNSAAVVRKKSCHQNDACKSELYAKRIGTLYHCQIIYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="110146" PGL_stop="109407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110146" e_stop="109407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="110146" e_stop="109407" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110146" stop="109536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110056" stop="109446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110056" stop="109446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110056" stop="109446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110056" stop="109446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110056" stop="109452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110056" stop="109882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110043" stop="109424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109961" stop="109414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109940" stop="109407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109828" stop="109414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGCTTCTGATCCTGCTAGCATGATGTCTCAAGCTCTTGCCGTTTATAAAAACGTAGTGAGCAAGAACCTTGGCACTCAGCTTCCTGTGACCTCTCAATCCAAGTTGACCAAAAACACCAGGCAGAGTGATTCATCTGCAGTAAGCGGCGATGACAGCTCTCTTACTGCAAATTCTGCTGATGATCATCATCTGAGTGATCCCATTTTCTCGCTGCAAAGCCAAAAAAAGGATGACTGAATTTTCTTAGCTTTGTGAGTAAGTAGCCTTGCATGCATCGAATTCCTGAGTAGATAATTTGGCAATGATAAAGAGTGCCTATTCTTTTGGCGTAGAGCTCTGACTTGCATGCATCATTTTGGTGACAACTCTTTTTTCTGACAACGGCTGCTGAGTTCTGGATGAGGCTTCTTGGAAAGTAGAAAAGTGGTAGTAAAAAATTGAAATGGAAAAAGTGGTAGTTAGGGGTCATTATACTGATCGACTCTCCTTCAAATTTTGAAGGATGATGCATTTCCAGAGGTTTATTGTTTGGAGAACTTTAAAGCGTGTGGGAAACATGTACTTTTCAGTCGCCACTTTTATATGCTTTTTTTACATACGTTTTTCTGGAGACTCAAACTAATGACAGAAAAGTTTCATTGTTCAATAACCTGTTTTGTGCTCCAGGAAATGAACTCATTCTTTTTTGAATAAATATAATACCATGAGACGATCATCTTTGAATGCTCAGTTAAAG</gDNA_template>
            <first_frame> K  C  F  *  S  C  *  H  D  V  S  S  S  C  R  L  *  K  R  S  E  Q  E  P  W  H  S  A  S  C  D  L  S  I  Q  V  D  Q  K  H  Q  A  E  *  F  I  C  S  K  R  R  *  Q  L  S  Y  C  K  F  C  *  *  S  S  S  E  *  S  H  F  L  A  A  K  P  K  K  G  *  L  N  F  L  S  F  V  S  K  *  P  C  M  H  R  I  P  E  *  I  I  W  Q  *  *  R  V  P  I  L  L  A  *  S  S  D  L  H  A  S  F  W  *  Q  L  F  F  L  T  T  A  A  E  F  W  M  R  L  L  G  K  *  K  S  G  S  K  K  L  K  W  K  K  W  *  L  G  V  I  I  L  I  D  S  P  S  N  F  E  G  *  C  I  S  R  G  L  L  F  G  E  L  *  S  V  W  E  T  C  T  F  Q  S  P  L  L  Y  A  F  F  T  Y  V  F  L  E  T  Q  T  N  D  R  K  V  S  L  F  N  N  L  F  C  A  P  G  N  E  L  I  L  F  *  I  N  I  I  P  *  D  D  H  L  *  M  L  S  *   </first_frame>
            <second_frame>  N  A  S  D  P  A  S  M  M  S  Q  A  L  A  V  Y  K  N  V  V  S  K  N  L  G  T  Q  L  P  V  T  S  Q  S  K  L  T  K  N  T  R  Q  S  D  S  S  A  V  S  G  D  D  S  S  L  T  A  N  S  A  D  D  H  H  L  S  D  P  I  F  S  L  Q  S  Q  K  K  D  D  *  I  F  L  A  L  *  V  S  S  L  A  C  I  E  F  L  S  R  *  F  G  N  D  K  E  C  L  F  F  W  R  R  A  L  T  C  M  H  H  F  G  D  N  S  F  F  *  Q  R  L  L  S  S  G  *  G  F  L  E  S  R  K  V  V  V  K  N  *  N  G  K  S  G  S  *  G  S  L  Y  *  S  T  L  L  Q  I  L  K  D  D  A  F  P  E  V  Y  C  L  E  N  F  K  A  C  G  K  H  V  L  F  S  R  H  F  Y  M  L  F  L  H  T  F  F  W  R  L  K  L  M  T  E  K  F  H  C  S  I  T  C  F  V  L  Q  E  M  N  S  F  F  F  E  *  I  *  Y  H  E  T  I  I  F  E  C  S  V  K  </second_frame>
            <third_frame>   M  L  L  I  L  L  A  *  C  L  K  L  L  P  F  I  K  T  *  *  A  R  T  L  A  L  S  F  L  *  P  L  N  P  S  *  P  K  T  P  G  R  V  I  H  L  Q  *  A  A  M  T  A  L  L  L  Q  I  L  L  M  I  I  I  *  V  I  P  F  S  R  C  K  A  K  K  R  M  T  E  F  S  *  L  C  E  *  V  A  L  H  A  S  N  S  *  V  D  N  L  A  M  I  K  S  A  Y  S  F  G  V  E  L  *  L  A  C  I  I  L  V  T  T  L  F  S  D  N  G  C  *  V  L  D  E  A  S  W  K  V  E  K  W  *  *  K  I  E  M  E  K  V  V  V  R  G  H  Y  T  D  R  L  S  F  K  F  *  R  M  M  H  F  Q  R  F  I  V  W  R  T  L  K  R  V  G  N  M  Y  F  S  V  A  T  F  I  C  F  F  Y  I  R  F  S  G  D  S  N  *  *  Q  K  S  F  I  V  Q  *  P  V  L  C  S  R  K  *  T  H  S  F  L  N  K  Y  N  T  M  R  R  S  S  L  N  A  Q  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110145" stop="109906"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NASDPASMMSQALAVYKNVVSKNLGTQLPVTSQSKLTKNTRQSDSSAVSGDDSSLTANSADDHHLSDPIFSLQSQKKDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0025K18.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109665" stop="109450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLLQILKDDAFPEVYCLENFKACGKHVLFSRHFYMLFLHTFFWRLKLMTEKFHCSITCFVLQEMNSFFFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 177 chains have been computed
$ 
$ memory statistics:
$ 318864 bytes spliced alignments in total
$ 116 spliced alignments have been stored
$ 2748 bytes was the average size of a spliced alignment
$ 26608 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1663 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 199 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:32:14
-->
