<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:49:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4400" stop="3477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4101" g_stop="3776" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4101" e_stop="3776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCTGTCCCAGGCTTGGCCAACGTCACAGTTTTAGCATTACAATCTAATATTGCAAAATTTGGAGAAAGACAAGTCATACCAAGATTTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCCCCACAAAAGTCACCAGACAAGACCTATATACCTTTTCAACTATCACGGACTCACCCACCGGAGTAGACACACGAATAGGCCTGTTAAGTAATTCACAAGGTAAATTAAGACCAGTAGTAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCAA</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3498" stop="4737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3798" g_stop="4437" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="654" r_length="638" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3798" e_stop="4437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTACTACTGGTCTTAATTTACCTTGTGAATTACTTAACAGGCCTATTCGTGTGTCTACTCCGGTGGGTGAGTCCGTGATAGTTGAAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGAAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAAATCTTGGTATGACTTGTCTTTCTCCAAATTTTGCAATATTAGATTGTAATGCTAAAACTGTGACGTTGGCCAAGCCTGGGACAGATCCTTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGTGTGTTTATCTTTCTTGGCACACCTTAGAGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTTGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAAACCTTCCTGGTATGCCACCGGATAGAGATATTGATTTTTGCATTAATCTGGAACCGGGTACTCGCCCCATTTCTATACTCCCTTATAGAATGGATCCCGCGGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTAGGAAAAAGCTTCATT</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTGT-TCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595872" ref_strand="+" ref_description="SGN-U595872 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-95) Polyprotein,; (*SWP) sp|Q7LHG5|YI31B_YEAST (e_value=9e-27) Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I; ">
      <seq>gtccgagataaggtgttgcgaggagaggctaaagaagcaaaaatcaatgaggaatgtgttttgagaattaagggaagggtatgtgtaccccgcaccgatgatttgattcacactattcttacggaggctcatagttcaaggtattctatacatcctggtgcaaccaagatgtatcgtgacctaaagcaacatttttggtggagtaggatgaagcgtgacattgttgattttgttgctcaatgcccgaattgtcagcaagtaaagtatgaacaccaaaggcctggagggacacttcagagaatgcccattcctgaatggaagtgggagagaattgaaatggacttcgtggttggtctccaaagacaatgggtaagtatgacaccatatgggtaattgttgacagattaactaagtctgctcatttcattccggtcaaagtgacttataatgcagagaagttagccaaactttacatctcagaaattgtttgattgcatggaattccactttccattatatcagatagagttacgcagtttacttctaaattttggaaaacattgcatgccgagttaggtactaggttagatcttagtactgcattttaccctcagaccgatggtcagtctgagcgaataatttangtcttggaggatatgcttcgtgcatgtgtgatagaatttagtggncattgggataacttcttacncttagcanaattctcatacnacaatagctatcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5479" stop="6829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5778" g_stop="6529" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U595872" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5778" e_stop="6529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGATAAGGTGTTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTAAGAATTAAGGGAAGGGTATGTGTACCCCGCATCGATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACACCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGAATGAAGCGTGACATTGTGGAGTTTGTCGCCAAATGTCCAAATTGTCAGGAAGTAAAGTATGAACACCAGAGGCCTGGAGGAACACTTCAGAGAATGCCCATTCTGGAATGGAAGTGGGAGAGAATTGCAATGGACTTCGTGGTTGGTCTTCCAAAGACAATGGGTAAGTACGACTCCATTTGGGTAATTTTTGACAGATTAACTAAGTTTGCTCATTTCATTCCGGTAAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTATATCTCGGAAGTTGTTCGATTGCATGGGGTTCGGTTCCACTCTCCATCATATCAGATAGAGGTACACAGTTTACTTCTAAGTTTTGGAGAACATTGCATGCTGAATTGGGTACTAGGTTGGATCTGAGTACCGCATTTCACCCTCAAACCAATGGTCAGTCTGAGCGAACGATTCAAGTGTTGGAGGATATGCTTCGTGCATGTGTGATAGAATTTGGTGGCCATGGGGATAACTTTTTACCCTTAGCAGAGTTCTCCTACAACAATAGCTATCACTCA</genome_strand>
        <mrna_strand>GTCCGAGATAAGGTGTTGCGAGGAGAGGCTAAAGAAGCAAAAATCAATGAGGAATGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCACCGATGATTTGATTCACACTATTCTTACGGAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGGATGAAGCGTGACATTGTTGATTTTGTTGCTCAATGCCCGAATTGTCAGCAAGTAAAGTATGAACACCAAAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTGAAATGGACTTCGTGGTTGGTC-TCCAAAGACAATGGGTAAGTATGACACCATATGGGTAATTGTTGACAGATTAACTAAGTCTGCTCATTTCATTCCGGTCAAAGTGACTTATAATGCAGAGAAGTTAGCCAAACTTTACATCTCAGAAATTGTTTGATTGCAT--GG---AATTCCACTTTCCATTATATCAGATAGAGTTACGCAGTTTACTTCTAAATTTTGGAAAACATTGCATGCCGAGTTAGGTACTAGGTTAGATCTTAGTACTGCATTTTACCCTCAGACCGATGGTCAGTCTGAGCGAATAATTTANGTCTTGGAGGATATGCTTCGTGCATGTGTGATAGAATTTAGTGGNCATTGGGATAACTTCTTACNCTTAGCANAATTCTCATACNACAATAGCTATCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567689" ref_strand="+" ref_description="SGN-U567689 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gaaaatccatgttgagagcaaagtgaggtatttcatagactatacaagaaaatagtgtgtgaagaataatagaatgtgagcgatattttagtaagacggaaatcaaaagagtgttgttccttttgagtgtgtagtattcactttgagtattgtattcgtgactacacaatgtaaaattccttattatagtaatatcagttgctcctctcggctcgtgattttttcccttattcagaagggtttccacgtaaaattcttggtgtcgttattttcctattttatttccattatttttatcatatatatttttgtgctcgtctgcgttttcccaacagacacctcattcatttatctattttcttttcttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16686" stop="17622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16986" g_stop="17323" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U567689" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16986" e_stop="17323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAGAAAATAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTTAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCTCATTTTATTTCCATTACTTTTACCATAGATACTTTTGTGATTGTCCGCGTTTTTCCAACAAACT</genome_strand>
        <mrna_strand>GAAAATCCATGTTGAGAGCAAAGTGAGGTATTTCATAGACTATACAAGAAAATAGTGTGTGAAGAATAATAGAATGTGAGCGATATTTTAGTAAGACGGAAATCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTATTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTCCTTATTATAGTAATATCAGTTGCTCCTCTCGGCTCGTGATTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCTATTTTATTTCCATTATTTTTATCATATATATTTTTGTGCTCGTCTGCGTTTTCCCAACAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567683" ref_strand="+" ref_description="SGN-U567683 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gaaaaaccactttgagagcaaagtaagatattctgtagactatacaagaaaaagtagtttgtgaagaaaaatacagtgtgagtgatattttagtaagatgaaaaccaaaagagtgttgttccttttgagtgtgtagtagtcactttgagtattgtatttgtgactacacgatgtaaaattccttactatagtaatatcagttgctcttcttggcccgcagttttttccttattgagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16686" stop="17523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16986" g_stop="17223" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U567683" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16986" e_stop="17223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAG-AAAA-TAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTTAGAAG</genome_strand>
        <mrna_strand>GAAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTT-CCTTATTGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567685" ref_strand="+" ref_description="SGN-U567685 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gaaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16686" stop="17495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16986" g_stop="17195" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U567685" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16986" e_stop="17195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAG-AAAATAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTG</genome_strand>
        <mrna_strand>GAAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590594" ref_strand="+" ref_description="SGN-U590594 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205313|gb|AAT38742.2| (e_value=2e-14) 'chromo'; ">
      <seq>gagatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagctgcntgcagcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="23470" stop="24740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23770" g_stop="24440" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U590594" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23770" e_stop="24440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGATTAACTAGGTTCTTGCTTTTCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCCGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGAGTGACTACAGGGCCTATAATGACGAGTTATCAGCATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTAGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTAGAACGATTTGCCATTGAGTTTGTGACCTATCAGTTTCAGGGGAACGCCAAAATGTGGTGGCGGTCATATGTTGAGTGTCAACCAACACAGGTACCACCTATCACTTGGGCATCATTCTCTAGATTATTTATGGAGAAGTATATACCCCAGACTTTGAGAGATAGTAGGAGAGATGAGTTCCTGAGCCTAGAGCAGGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTTCGTCCACAAGAGCGGATTGTCCGTTTTGTGAAGGGATTGAGGTCAGACTTGCAGATTCCAGCCTTACAGGTAGCTGC-TGCAGCAAAATC</genome_strand>
        <mrna_strand>GAGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCTGCNTGCAGCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589391" ref_strand="+" ref_description="SGN-U589391 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|218694563|ref|YP_002402230.1| (e_value=1e-106) transposase,; ">
      <seq>atcctgcacagcgctaatacatcgcctcatagtttccccaatatctacccatgtgtgaatatattttgagtaagcagggttgcagccacgaatgagtcttcccttgttattgtgtagccagaatgccgcaaaacttccatgcctaatccaactgttgagagtacgtttcaatttctgactgtgttagcctggaaatgcttgtcccagccttgtttctgaccgtgaacgcgccgccagccaacatgttagttgaagacatgcagggcgattagcaacatgatatcaaaacgctctgagctgctcgttcggctatggcgtaagcctagtccgtatgcaggacttttcaagtctcggaaggtttcttcaatctgcattcgcttccaatagatattaacaagttgtttgggtgttcgaatttcaacaggtaagttaattgctagaatccatggctcctttgccaacgctgagtagattttaggtgacgggtggtgacaatgagtccgtgtcgagcgctgattttttcggcctttacagcgagatttatacaataaaatttggcatgagattggattgcttttagtcagcctcttatagcctaaagtctttgagtgactaaatgacatatcatgtaagttgctgataggtttccagttttccgctcctaggtctgcatattgtacttttcctcctactcgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63280" stop="64566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63582" g_stop="64266" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="699" r_length="688" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U589391" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63582" e_stop="64266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGC-CCGCAAGCCAACATGTTAGTTGAAG-CAT-CAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTT</genome_strand>
        <mrna_strand>CGCTAATACATCGCCTCATAGTTTCCCCAATATCTACCCATGTGTGAATATATTTTGAGTAAGCAGGGTTGCAGCCACGAATGAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAATCCAACTGTTGAGAGTACGTTTCAATTTCTGACTGTGTTAGCCTGGAAATGCTTGTCCCAGCCTTGTTTCTGACCGTGAACGCGCCGCCAGCCAACATGTTAGTTGAAGACATGCAGGGCGATTAGCAACATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAAGCCTAGTCCGTATGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCCAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAATTGCTAGAATCCATGGCTCCTTTGCCAACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTACAGCGAGATTTATACAATAAAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAAATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCCTACTCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589393" ref_strand="+" ref_description="SGN-U589393 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|151940600|gb|EDN59046.1| (e_value=9e-71) hypothetical; ">
      <seq>ggttaccactggaagcgcttgacccaaccttgttgtatgcatcatgaacgccctcttgctcatcatgttagttgaagcatcacggcgagttaggcatcgatgatatcaaaacgctctgagctgctcgttcagttaatggcgtatgccatagtccgtaggcaggacttttgaagatctcggaaggtttcttcaatctgcattcgcctctgaatagatattaacaagttgtttgggtgttcgaatttcaacaggtaagttagttgctagaacccatggctcctttgccgacgctgagtagattttaggtgacgggtggtgacaatgagtccgtgtcgagcgctgattttttcggcctttagagcgagatttatacaatagaatttggcatgagattggattgcttttagtcagcctcttatagcctaaagtctttgagtgactagatgacatatcatgtaagttgctgataggtttccagttttccgctcctaggtctgcatattgtacttttcctcttactcgacttaaccagtaccaacccagcttctcaacgggattataccatggcactttaaagccagcatcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63453" stop="64630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63758" g_stop="64330" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="590" r_length="583" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U589393" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63758" e_stop="64330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAAGTGCTTGTCCCAACCTTGTT-TCTG-AGCATGAACGCCCGCAAGC-CAACATGTTAGTTGAAGCATCAGGGCGA-TTA-GCAGC-ATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCT-ATGGCGTAGGCC-TAGTCCGTAGGCAGGACTTTTCAAG-TCTCGGAAGGTTTCTTCAATCTGCATTCGCTTC-GAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGA</genome_strand>
        <mrna_strand>ACTGGAAGCGCTTGACCCAACCTTGTTGTATGCATCATGAACGCCCTCTTGCTCATCATGTTAGTTGAAGCATCACGGCGAGTTAGGCATCGATGATATCAAAACGCTCTGAGCTGCTCGTTCAGTTAATGGCGTATGCCATAGTCCGTAGGCAGGACTTTTGAAGATCTCGGAAGGTTTCTTCAATCTGCATTCGCCTCTGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGGATTATACCATGGCACTTTAAAGCCAGCATCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604818" ref_strand="+" ref_description="SGN-U604818 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116267070|gb|ABJ96340.1| (e_value=3e-56) transposase; ">
      <seq>ataatcagacaacacttgtgcaaaatcgatcttttaacctaatctacttttacccttctgccccgatttacacttatcaacgactcaacttcttaacgatggcttgccacgccttacttgactgaataactctcactcttaactaacttggacgtaacctgccaaccatatctatatctaaacataacatcttactaatctaccgattgttacgtaatcgtctcctccacaaagagcgactcgctgtataccgttggcatgctagctttatctgttcgggcaatacgatgcccattgtacttgttgactggtctgatatccgtgagcaaaaacggcttatggtattgcgagcttcagtcgcactacacggtcgttctgttactctttatgagaaagcgttcccgctttcagagcaatgttcaaagaaagctcatgaccaatttctagccgaccttgcgagcattctaccgagtaacaccacaccgctcattgtcagtgatgctggctttaaaagtgccatggtataaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65044" stop="63993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64821" g_stop="64292" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U604818" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64821" e_stop="64292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCT-CTTTACCAATTCTGCCCCGAATTACACTTA-AAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTT-AAAGTGCCATGGTATAAATCCG</genome_strand>
        <mrna_strand>ATAATCAGACAAC-ACTTGTGCAAAATCGATCTTTTAACCTAATCTACTTTTACCCTTCTGCCCCGATTTACACTTATCAACGACTCAACTTCTTAACGATGGCTTGCCACGCCTTACTTGACTGAATAACTCTCACTCTTAACTAACTTGGACGTAACCTGCCAACCATATCTATATCTAAACATAACATCTTACTAATCTACCGATTGTTACGTAATCGTCTCCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAAGTGCCATGGTATAAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604614" ref_strand="+" ref_description="SGN-U604614 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205155|gb|ABI34274.1| (e_value=3e-45) IS10; ">
      <seq>aatcgtaagattaaggtaaatgacatacttgtcagatgatccaatggatacaccacaaatctataatcagacaacaaatatgtgcgaactcgatattttacacgactctcgttaccgattctgccccgaattacacttaagacgactcaacagcttaacgttggcttgccacgccttacttgactgtaaaactctcactcttaccgaacttggccgtaacctgccaaccaaagcgagaacaaaacataacatcaaacgaatcgaccgattgttaggtaatcgtcacctccacaaagagcgactcgctgtataccgttggcatgctagctttaactgttccggcacaaagacgcccactgtacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65160" stop="64221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64883" g_stop="64521" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U604614" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64883" e_stop="64521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTAAGTTAAGGTAGAT-ACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAA-ATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTT</genome_strand>
        <mrna_strand>AATCGTAAGATTAAGGTAAATGACATA-CTTGTCAGATGATCCAATGGATACACCACAAATCTATAATCAGACAACAAATATGTGCGAACTCGATATTTTACACGACTCTCGTTACCGATTCTGCCCCGAATTACACTTAAGACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTAACTGTTCCGGCACAAAGACGCCCACTGTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600659" ref_strand="+" ref_description="SGN-U600659 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|209947532|ref|YP_002291029.1| (e_value=1e-21) hypothetical; ">
      <seq>ctgatgaatcccctaatgatttttatcaaaatcattaaattaaggtatatacacatcttgtcatatgatcacatggtttcgccaaaaatcaataatcatacaaccaaatgtgctaactccatattttacacgactctctttaccaattctgccccctattacacttaaatcgactcaacagcttatcgttggcttgccacgccttacttgactgtaaaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65212" stop="64390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64912" g_stop="64690" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U600659" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64912" e_stop="64690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCT</genome_strand>
        <mrna_strand>CTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAATTAAGGTATATACACATCTTGTCATATGATCACATGGTTTCGCCAAAAATCAATAATCATACAACCAAATGTGCTAACTCCATATTTTACACGACTCTCTTTACCAATTCTGCCCCCTATTACACTTAAATCGACTCAACAGCTTATCGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581760" ref_strand="+" ref_description="SGN-U581760 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gaaaactccaaaattaatttctcaaattataaagtgagacatagctattatcctattgaatcacttttcttctccctttaatttcaatttcaattgataatttgggcaggccaagcatacaaaaattagaatttttttcattgatttaaaatgcttaagcaaagcaaaatcaccaaattccactattacagcttagttgagcactcataaatggttatggtgctatatagactaaaaacaatctccgtactcctaatctttttcttctttgaaaatgattagaagctaaaaaaacacaagtcgaatccagatctcaaaactcatatgagccagacaacagttcttaaagttgaattttatggtaaatttttatagctcgaacaatacgaccacgcataatcaaactcagatctcaaaacaaaaagaaatctatgaatagaatgggcgaatcaagctataggagcaaaatcgccaccaaaaaaatagcatcacataaccaccacaaaagactcataaccactggagcgaaatcagccgtattgttcaacatctgaaactttcattagtagtgttataactcaccaaaacacttaatcattaacgcaggttcaatggacaaaatggacggagatgcagatgaaacgcaatcgcaagggccgccgagatttgtgtcgatttctcagagagtcagagtaaaaggagaacaaaaggagacgtcggagcaagggagaagaaaaaggggggggtggggttgggatccttaatctattttttcctttttttctttttattattaattttttttaaagaaaattaattgctatcactcgcctttttaagtgtgataccatgcgctataaatgagtcagcaaaataaatgtcacataaacttaatcaacgatcaaagggtttaaaaatctcattttgattgagttgaagggttcagttgacaaaagattaagtagaagggtttacaatataaattcatacaattataagggtctattagaccatttcgcctatttattttaaataggttaaaaaatggttacaaataaatgaaaataagggaggtagatgtaattttgtaaaccataggggaggtgagtgttatagagcgaaacttggagcgaggtctctgaaattatcctttttgtaagtatattcaatattattctgaaatatcaatgacattactacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130245" stop="132044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130544" g_stop="131744" g_length="1201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1202" r_length="1202" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U581760" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1201</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130544" e_stop="131744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCCAAAATTAATTTCTCAAATTATAAAGTGAGACATAGCTATTATCCTATTGAATCACTTTTCTTCTCCCTTTAATTTCAATTTCAATTGATAATTTGGGCAGGCCAAGCATACAAAAATTAGAATTTTTTTCATTGATTTAAAATGCTTAAGCAAAGCAAAATCACCAAATTCCACTATTACAGCTTAGTTGAGCACTCATAAATGGTTATGGTGCTATATAGACTAAAAACAATCTCCGTACTCCTAATCTTTTTCTTCTTTGAAAATGATTAGAAGCTAAAAAAACACAAGTCGAATCCAGATCTCAAAACTCATATGAG-CAGACAACAGTTCTTAAAGTTGAATTTTATGGTAAATTTTTATAGCTCGAACAATACGACCACGCATAATCAAACTCAGATCTCAAAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCATTAGTAGTGTTATAACTCACCAAAACACTTAATCATTAACGCAGGTTCAATGGACAAAATGGACGGAGATGCAGATGAAACGCAATCGCAAGGGCCGCCGAGATTTGTGTCGATTTCTCAGAGAGTCAGAGTAAAAGGAGAACAAAAGGAGACGTCGGAGCAAGGGAGAAGAAAAAGGGGGGGGTGGGGTTGGGATCCTTAATCTATTTTTTCCTTTTTTTCTTTTTATTATTAATTTTTTTTAAAGAAAATTAATTGCTATCACTCGCCTTTTTAAGTGTGATACCATGCGCTATAAATGAGTCAGCAAAATAAATGTCACATAAACTTAATCAACGATCAAAGGGTTTAAAAATCTCATTTTGATTGAGTTGAAGGGTTCAGTTGACAAAAGATTAAGTAGAAGGGTTTACAATATAAATTCATACAATTATAAGGGTCTATTAGACCATTTCGCCTATTTATTTTAAATAGGTTAAAAAATGGTTACAAATAAATGAAAATAAGGGAGGTAGATGTAATTTTGTAAACCATAGGGGAGGTGAGTGTTATAGAGCGAAACTTGGAGCGAGGTCTCTGAAATTATCCTTTTTGTAAGTATATTCAATATTATTCTGAAATATCAATGACATTACTACAT</genome_strand>
        <mrna_strand>GAAAACTCCAAAATTAATTTCTCAAATTATAAAGTGAGACATAGCTATTATCCTATTGAATCACTTTTCTTCTCCCTTTAATTTCAATTTCAATTGATAATTTGGGCAGGCCAAGCATACAAAAATTAGAATTTTTTTCATTGATTTAAAATGCTTAAGCAAAGCAAAATCACCAAATTCCACTATTACAGCTTAGTTGAGCACTCATAAATGGTTATGGTGCTATATAGACTAAAAACAATCTCCGTACTCCTAATCTTTTTCTTCTTTGAAAATGATTAGAAGCTAAAAAAACACAAGTCGAATCCAGATCTCAAAACTCATATGAGCCAGACAACAGTTCTTAAAGTTGAATTTTATGGTAAATTTTTATAGCTCGAACAATACGACCACGCATAATCAAACTCAGATCTCAAAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCATTAGTAGTGTTATAACTCACCAAAACACTTAATCATTAACGCAGGTTCAATGGACAAAATGGACGGAGATGCAGATGAAACGCAATCGCAAGGGCCGCCGAGATTTGTGTCGATTTCTCAGAGAGTCAGAGTAAAAGGAGAACAAAAGGAGACGTCGGAGCAAGGGAGAAGAAAAAGGGGGGGGTGGGGTTGGGATCCTTAATCTATTTTTTCCTTTTTTTCTTTTTATTATTAATTTTTTTTAAAGAAAATTAATTGCTATCACTCGCCTTTTTAAGTGTGATACCATGCGCTATAAATGAGTCAGCAAAATAAATGTCACATAAACTTAATCAACGATCAAAGGGTTTAAAAATCTCATTTTGATTGAGTTGAAGGGTTCAGTTGACAAAAGATTAAGTAGAAGGGTTTACAATATAAATTCATACAATTATAAGGGTCTATTAGACCATTTCGCCTATTTATTTTAAATAGGTTAAAAAATGGTTACAAATAAATGAAAATAAGGGAGGTAGATGTAATTTTGTAAACCATAGGGGAGGTGAGTGTTATAGAGCGAAACTTGGAGCGAGGTCTCTGAAATTATCCTTTTTGTAAGTATATTCAATATTATTCTGAAATATCAATGACATTACTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578561" ref_strand="+" ref_description="SGN-U578561 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|147804664|emb|CAN66637.1| (e_value=5e-131) hypothetical; (*ATH) AT2G10090.1 (e_value=4e-31) | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-24) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttgaagatctcatagtaaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="151073" stop="139171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150773" g_stop="150423" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150422" i_stop="141625" i_length="8798">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141624" g_stop="141559" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="414" r_length="60" r_score="0.621"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141558" i_stop="141069" i_length="490">
            <donor d_prob="0.900" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141068" g_stop="140373" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="1111" r_length="697" r_score="0.905"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140372" i_stop="140301" i_length="72">
            <donor d_prob="0.968" d_score="0.88"/>
            <acceptor a_prob="0.756" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140300" g_stop="139471" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1112" r_stop="1942" r_length="831" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U578561" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>1943</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150773" e_stop="150423"/>
          <exon e_start="141624" e_stop="141559"/>
          <exon e_start="141068" e_stop="140373"/>
          <exon e_start="140300" e_stop="139471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACACATTTCTTGCTTGAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAGATTCTGAAAATTTTCCTTTTTCTGCATATATTTTTCACTCAAAT-AAATCAAAGTGGCGATCGACTGAGTCTGTGTGACTTGTTGCTG-TCTGAAGTTTGCTGAATTTAAAGAAATTTGAGGTACCGCTATTTCTTTAATAGGTTTGATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTATAGTGACGGGATTAAAGTTCTTAATGACGCACAGTAGTTTCTGTGGAGTCGGATTACTTCTTGTATTTTAT-GTATTTCCTGCTCCATCTTATTTCAGTTTCTATTTTGTCACGACCCAAATTGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATACAAAACCCAACATTTCAACAATGCGGAAGACTTAAAATTCATTAACAAAATCAATTAAATAACTTCTAAAAACTCAAACACTTATTATTCCCCAAAATCTGGAAGTCATCACCACAGGAACATCTATCCTCAAATTACTAAATCTAAGAGTATCTAAAAAGCTAAAATAAATAAAAAGCTAGTCCACGCCGGAACTTCAAGGCATCAAGACATTAACAAGAACATCCAGACCAAGCTAGAAGCATTAGCTCACCCTGAAATCTGATATGATGAAGACTGGCTAGAGTTACGGTTGAGTTGAAGACGACGGCACATTTGCTGCACTCCACAAATAACAAAGAAAGAAACATACAAACAGGGATCAGTACAAAACACAAGTACTGAGTAGGTATCATCAGCCAACTAAAAATAGAAAACAGTATATATCAGATAATATCGTAAAATCAACTACAATACTCAACAGGTAGCAACAACAAGTACTATAATCATTAATAAGTACGCCAAGTACACCCATGAGGACTCAAGCCTCAATACCGTACTCATTTGGGAAATAGGTTCATTAAATTGAGTATATTAACATATTTCAAGATTCATTCTCTTTACTATCCTTGTGTTGGAACGTGACACTCCGATCCTCATCATACTATCCTGGTGTCGGAACGTGACACTACGATCCTCATCATACTATCCTGGTGTCGGAACGTTACACTCTGATCCTCATCATACTATCCTGGTGTCGGAACGTGACACCCGATCCATATACTTTCCTGGTGTCAGAACGTGACACTCCGATCCATATTCTATCCTGGTGCCGGAACGTGACACTCTGATCCTCATCATACTATCCTGGTGTCGAAACGTGACACCCGATCCACATACTATCCTGGTGTCAGAACGTGACACCCGATCCATATACTTTCCTGGTGTCGGAACGTGACACTCCGATCCATATTCTATCCTGGTGCCGGAACGTGACACTCCGATCCTCATCATACTATCCTGGTGTCGAAACGTGACACCCGGTCCATATACTATCCTGGTGTCGGAACGTGACACCCGATCCATATACTATCCTGGTGCCGGAACGTGACACTCCGATCCTCATCATACTATCCTGGTGTCGGAACGTGACACTTCGATCCTCATCATACTATCGTGGTGTCGGAACGTGACACACGATCCTCTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACTAAGGCATCATCATTAACAAAGAGGTTTTCAAGATTTAGGATTCAATAGCCTCATCATGCTTATTTTATAACAATTATATAATCACATCATGCAAGCACACAATTAAGCATATAGAAGGGTTTACAATACCACCCAACACATATCATTCGCTATTAAGAGTTTACTATGAAATAGCATAAACCATAACCTACCTCCACCGAAGAATTCGTGATCAAGCAAGCTATCCTCAAAGTCTTTGCTTTCCTCTTCGTTTCTCCTCTCTCTCGATCGATCGATCGTTTCTCTCTTTCTTGTTCTTTCTATTTTTCTTATTCAAACCCTTTTGTTTTACCCTAATTAGCATATAATTAAGTATAAAAGATGACAAAGTAACCCACTAATTAATTCAAGGTTATCTCCTTTAACCCCTAAGAAATCGAATATTAATATTCAACCACTAACTTTATAATTATAAGCAGGAATAGTTCAAAACGCCCCTTAAAACATTTAACAGAATTTCGACCAAGCCAGGGTTATGCATCCTGTGACTGCCCGTCGTGCCTGCGACGGTCCGTCCTGCTGCTTCTGTCACAGAGTTCAAAGACTAAATTTTACTAAGGGTCTGTGATGGCTCGTCACGCCTGTGACGGTCCGTCCTGCCATTTTGTCGCGAAGTTCAGAGAGTCGATCTCAATACCCAAATTTCAGTATTCTAAGTGTTTTGGAATGGGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGTGTCTGTCGACCCAGACAGCTTTTACCAGAATACACTCTTCTGCTCAAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCCATCGTTCGTCCTTGAACGATCATAAGAAGAAAAATAAGGGCGAAAAGGATTATCTGAATCTATAAACAGGTGTGGGTATCCTTCTTGCATATCAGTCTCTTTCTCCCAAGTGGATTCTTTAACTGGTCGATTCTTCCATTGAACTTTGATGGATGCAATCTCCCTTGACCTCAACTTGCGAACTTCTCTATCTAAAATAGCAACAGGCGCCTCCTCATAAGACAAATTCTCATCATGCAGAACTGAATCCCAACAAATAATGTAGTTTCCATCCACATGGTATCTTTTCAACATAGACACATGAAATACCGGATGCACTCCTGACAGCCCTGGGGGCAAGGCCAATTCATAAGCTACCTCCCTCACGCGCTGCAAAACTTCAAATGGACCAACATACCTTGGAGTAAGCTTACCTCGCTTACCAAACCGCATTACCCCTTTCATGGGCGAAACCTTCAGCAAGACTTGTTCACCCTCCATAAACTCCAAATCTCTAACCTTTCGATCTGCATATTCTTTTTGTCTACTTTGAGCCGCTAAAAGCTTTTCTTGAATGCATTTCACTTTATCTAACGATTTCCTCAGAAGGTCAGTACCCCAAGGTCTAACCTCAAATGCATCAAACCAACCAATGGGAGACCTACATCTCCTCCCATACAGTGCCTCAAATGGGGCCATACCAATACTTGAGTGATAGCTATTATTGTACGAGAATTATGCTAAGGGTAAAAAGTTATCCCAATGACCACTAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACTTAGTACCCAATTCAGCATACAATGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAACTTCCGAGATGCAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAAACTATCAACAGTTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCACTTCCATTCCAGAATGGGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACGATTTGGACATTTCGCGAAAAACTCCACAATGTCATGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGGTTGTTGCTTCTTTAGCCTCTCCTCGCAACACTTTATCTCGGATCCGGATCAATTTCTCATCAGTAAAGTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAAATCATTAGCCAGAGTATGAAACTCTCTAGCCAATGGGCGTCTAGAAACTTGCAAGTGATCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCCTTCTGAGTAAAGACATATTGTAGGCTACGATGGTCCGTATAGACTTCACACTTAACCCCATATAGATAGTGCCTCCATTGCTTTAATGCAAACACTACCGCGGCCAACTCCAAATCATGGGTCGGATAGTTACATTCATGCACTTTTAATTGCCTTGAAGCATAAGCAATTACATTCTTCTCTTGCATTAGCATTGCACCAAAACCTGAATAGGATGCATCACAATAGACAATGAAGTTCTTACCTTCCACTGGCAAGGTAAGAATTAGTGCAGTAGTCAACAAGGTCTTGAGCTTCTGAAAGCTTTCTTCGCACTCGTCCGACCATACGAATGGAAAACTTTGCTTAGTCAAATTTGTCAGTTGGGAAGCAACAAGGGGAAAATCCCTTAACAAATCGACGATAGTAGCTAGCTAAACCAACAAAGCTCCTTGCCTCTGTAACATTAGTAGGTCTCTCCCAATTCTTCACTGCTTCAATCTTAGATGGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCTTTCTTGATCTTTGAGTATACCAGTATATCATCAATGAATACAATGACAAAGAGATCCAGATATGGCTTCAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGCCCAAATTACATTAATAAGAACTCATAATGCCAATACCTGGTCCGAAAAGCGGTCTTGGGCACATCCGTTGCCCGTATTTTCAATTGATGGTAACCGGATCTCAAATCCATTTTTGACAAGGTACAAGCACCTTGTAACTGGTCGAATAAATCATCAATGCGAGGAGGAGGATACTTATTCTTGACCGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATAGGAGCACCCCAAGGGGATGCACTTGGTCTATTGAAGCCTTTTCCTAACAATTCTTGAAGTTGAGCCTTTAATTCCATTAACTCAGCGAGAGCCATTCTATAAGGGGGTATGGAAATGGGGCGAGTACCCGGTTCCAGATCAATGCAAAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGGAACTCACGGACTACCAAAACCGACTCAATTGAAGGTACTTGGGTAATGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACTGGAGTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATCTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCACCCATTTCTAAGATAACCAAGTCTACATAATTATTACTCCCCACAAAAGTCACCAGACAAGACCTATATACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGAATGTTAAGCAATTCACAAGGTAAATTAAGACCAGTATCAAATGAGGAATATACATATGAAAATATGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATAACAGCATCAGATGTCTCCGCTTCAGACCGCCCGGGGAAAGCGTAACAATGGACCCTCTCACCTGTCTGTCCGTTGCCCCTACCATGTTGTGCTGTAGTGGCTCCAGTTTGCCCGTCACCCCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCCCTTCCATGACCATCTCTACCTCTAACTATTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTACCCCCATCCATAACACTCTCTGGATTCAAGCATCGGCCTTTGTGAGAATGACGAAGTCTGGGGATAACGACAAAACTGAGAGAAATGTTGACCGGTCTGCGGTGGACCCCGAACTACAGTCTGCAGTGAAGACTGAATAGGTCGGGCTGGGTAACCTCCTGAACCCTGCCCTCTGGAGTAAGAACCATTAAACTCACCTCCCTTATGAAACCTTTTTGATGTTGATGCCATGGTGAAGTCATCAAGCTTCACTCCCTCTACCTCTATTACGAAGTCTACCACTTCCTGAAAGGATTTTGCTGTAGCCGCTACCTGTAAGGCTGAAATCCACAACTCTGACCTGAACCCCTTCACAAAATGGTGAATCCGTTCTTGTGGACTGAAACAAAGCTGGGTGGCATACCTGGATAATGCGCAAAACTTAGCCTCGTACGCAGTAACTGACATCCTACCTTGCTATAGGCTCAAGAACTCATCTCTCCTCCTATCCCTCAAGGTCCGGGGGATATACTTCTCCATGAATAAGTTAGAGACCGACGCCCAATTCATAGGTGGTGCTTGTGCGGGTTGACACTCAACATGGGAGCGCCACCACATTTTGGCATTTCCCTGAAACTTATAGGTTACAAACTCAACGCCAAATCGTTCCACTGTGCCCATTTTCTATAGTAACTCATGACAATCAACCAAAAAATCATAGGCATCCTCAGATTCATCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTTGTGCTGATCATTTGTCATTATAGGCCCTGTAGCCAACCGAGGAAACGTGTCTATTTCCAATGAGGCATCCATGCGGGGAGCCATAGAAGCTGCCTGTTGTACTTGTAGAACCTGAGGTGCTGGTGGAGAAAACACTGGAGGCGTCTGGCCTTGATCCGATAACCCGCTAAGATAAGCAAGAACCTGATTAATTATCTCTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTATTACCATATGGGCCAGGTGCTTCTCCTCTTCCTCTAGAGGACGTCCTCCCGCGACCTCTACCACGGCCTCTTGCCACTGCTCCCCTTCGAGCTACAGCCCCAATGGCTGGCTTAGAATCATCATGTCTTGCCGGTGTTGGTGTTGGTGTTGGTGCAGTTGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTATCACATAGATACCAATTGGATCCAAGTAATAGCATGAAAGAAAGAAAGAAAGAATGCAATTTTCCTAAAGTCTTACAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCATTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGAGACGCGAGTGGCACCAACACTTACCCTCCTATGTGAGCGAACCAACCAATACAAAACCCAACATTTCAACCAATAAACAAAATACAATGCGGAAGACTTAAAACTCATTAACAAAATCAATTAAATAACTTTTAAAAACTCAAACACTTATTATTCCCCAAAATCTGGAAGTCATCACCACAAGAACATCTATCCTCAAATTACTAAATCTAAGAGTATCTAAGAAGCTAGAATAAATAAAAAGCTAGTCCATGCTGGAACTTCAAGGCATCAAGACATTAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCTTGAAATCTGGTATGATGAAGACTGGCTAGAGTTACGGTTGAGTTGAAGACGACGGCAGGTTTGCTGCACTCCACAAATAACAAAGAAAGAAACATACAAGCATGGTTCAGTACAAAACACAAGTACTAAGTAGGTATCATCGGCCAACTCAAAATAGAAAATAATATATATCAGATAATATCGTAAAATCAACTACAATACTCAACAGGTAGCAACAACAAGTACTATAATCATTAATAAGTACGCCAAGTACACCCATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAAATAGGTTCATGAAATTGAGTATATTAACATATTTCAATATTCATTCTCTTTACTAACCTGGTGTCGGAACGTGACACTTCGATCCTCATCATACTATCCTGGTGTTGGAACGTGACGCTCCGATCCTCATCATACTATCCTTGTGTCGAAACGTGACACTCGGATCCTCATCATACTATCCTGGTGTCAGAATGTGATACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCATATTCTATCCTGGTGCCGGAACGTAACATTCCGATCCTCATCATACTATCCTGGTGTCAGAACGTGACACCCGATCCATATACTACCCTGGTGTCGGAACGTGACACCCGATCCATATACTATCCTGGTGCCGGAACGTGACACTTCGATCCTCATCATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATCATACTATTCTGGTGTCGGAACGTGACACCCGATCCTCTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACTAAGGCATCATCATTAACAAAGAGATTTTCAAGAATTAGGATTCAATAGCCTCATCATGCTTATTTTATCACAATTATATAATCAAATCATGCAAGCACACAATTAAGCATATGGAAGGGTTTTCAATACTACCCAACACATATCATTCGCTATTAAGAGTTTACTATGAAATAGCATAAACCATAACCTACCTCCACCGAAGAATTCGTAATCAAGCAAGCTATCCTCAAAGTCTTTGCTTTCCTCTTCGTTTCTCCTCTCTCTCTCTCGGTCGATCGTTTCTCCCTTTCTTGTTCTTTCTATTTTTCTTATTCAAACCCTTTTTCTTTTACCCTAATTATCATATAATTAAGTATAAAAGATGACAAAGTAACCCACTAATTAATTCAAGGTTATCTCCTTTAACCCCCAAGAAATCGAATTATTAATATTCAACCACTAACTTTATAATTATAAGCAGGAATAGACCAAAACGCCCCTTAAAACATTAAACAGAAATACGACCCAGCCAGGGTTACGCAGCCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCTGCTTTCGTCACAGAGTTCAGAGACTAAATTTTACTAAGGGTCTGTGATGGCCCGTCACGCCTATGACGGTCCATCCTGCTATTTCGTCGCGAAGTTCAGAGAGTCGATATCAGTACCCAAATTTCAGAATTCTAAGTGTTTTGGAACGGGACCCCCTCGACGGTCCGTCGTGCCCTTGATGGTCCGTCGTGGTGTCCGTCGACCCAGACAGCTTTTACCAGAATACACTCTTCTGCTCAAAACGACTAAACAGGTCGTTAAATATTTATTGGTTAACCTTATAAATACATGTTGATATTACAATGTTCAGAAATTTTATAATCTGTATTTGAGGTTTCAGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGAGTAAAAGAACATAAAAACATTATCGTTAAATCAGAAATAGTTTGTGTAAAGATTTGATCTTTACTGTTAGTA-TTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTAGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGGTCAAATACTGTCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTATAAGAGATGACAGCAAAAGATGTTCTTCTATCTCATTACGTTCATTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGCGTGATGAACGATTCTTGGTAACAGAATCATGGACACGCTCAAATTTTTAGTGTAAAAATCATATTCTGAGTGATCGGCAAAATGATCTGTACAATGTGTACAACAATGTCAAAACCTCAACAGAACTCT-GGATGCTTTAGAAAAAAAGTACAAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAA-ATTATACACAATAAGACCGTCGTCAACCAAGTTCAATAATTGTAGGTCATAATCCATGATCTCCTTCTTGAAGGTATAAATTTATTTAATGTATATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAATCTTTAATGTAGGATTGATTGTGAATGATGTCTTTTAAGTGGCTACAATTATTGAAAAGTTACCTCTTTTGTGGAAGGACTTCAAAAACTACTTGAAACACAAACGCAAGGAGATAACTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTAGTATTTCAGCAATATCTAGAGCAAATTTTGTTGAAGAAGATCTCACACAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGAAAAATGCTTCAACTGTGGTAAACATGGTCATAAGGCTACTGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGTAAACTTGGTTGAATCCAAAGGAGAAATGGTCGATCT-TGTGCAACGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATAACATGTTTGTGCCAAAAAAGAATTATTTTCATCATATACTCCAACACTTACAGATGAGAAGTTGTTTATGGCAAACTCGACTGTTGCAAAGGTGGAAGGAACTGACAAAGTCTTATTATATATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTT</genome_strand>
        <mrna_strand>CGGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTTTA-TA-AATAAAAGTTATTATAAGAG-TAACAATCTTA-AGA-AAATTTATAC-AGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603136" ref_strand="+" ref_description="SGN-U603136 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgacggaccgtcatgagcacgacggaccgtggagggtgtctcgttccaaaacacttagaattctgaaatttgggtactgagatcgactctctgaacttcgcgacgaaatggcacgacggaccgtcacaggcatgacgggctgtcacaaacccttagtgaaatttaatctctgaactttgtgacggaagcagcaggacggaccgtcgcaggcacgactggtcgtcacagactgcgtaaccctgactgggtcggatttttgttaaatgttttaaggggcgttttggactattcctgcttataattatgaaattagtggtttaatgttaataattcaattacttggggggttgaaggagataaccttgaattaattagcgggttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="140902" stop="141883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141202" g_stop="141583" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-U603136" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141202" e_stop="141583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGGACCATCAAGGGCACGACGGACCGTCGAGGGGGTCCCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGATATCGACTCTCTGAACTTCGCGACGAAATAGCAGGATGGACCGTCATAGGCGTGACGGGCCATCACAGACCCTTAGTAAAATTTAGTCTCTGAACTCTGTGACGAAAGCAGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGCTGCGTAACCCTGGCTGGGTCGTATTTCTGTTTAATGTTTTAAGGGGCGTTTTGGTCTATTCCTGCTTATAATTATAAAGTTAGTGGTTGAATATTAATAATTCGATTTCTT-GGGGGTTAAAGGAGATAACCTTGAATTAATTAGTGGGTTAC</genome_strand>
        <mrna_strand>CGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCACGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTGAAATTTAATCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGTAACCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTGAAGGAGATAACCTTGAATTAATTAGCGGGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="145478" stop="144554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145179" g_stop="144854" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145179" e_stop="144854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATCTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCACCCATTTCTAAGATAACCAAGTCTACATAATTATTACTCCCCACAAAAGTCACCAGACAAGACCTATATACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGAATGTTAAGCAATTCACAAGGTAAATTAAGACCAGTATCAAATGAGGAATATACATATGAAAATATGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575265" ref_strand="+" ref_description="SGN-U575265 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-65) Polyprotein,; (*SWP) sp|P04323|POL3_DROME (e_value=2e-11) Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol; ">
      <seq>ggcctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="147285" stop="146099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146986" g_stop="146399" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U575265" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146986" e_stop="146399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGGTTGTTGCTTCTTTAGCCTCTCCTCGCAACACTTTATCTCGGATCCGGATCAATTTCTCATCAGTAAAGTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAAATCATTAGCCAGAGTATGAAACTCTCTAGCCAATGGGCGTCTAGAAACTTGCAAGTGATCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCCTTCTGAGTAAAGACATATTGTAGGCTACGATGGTCCGTATAGACTTCACACTTAACCCCATATAGATAGTGCCTCCATTGCTTTAATGCAAACACTACCGCGGCCAACTCCAAATCATGGGTCGGATAGTTACATTCATGCACTTTTAATTG</genome_strand>
        <mrna_strand>GGCCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595870" ref_strand="+" ref_description="SGN-U595870 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=4e-63) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=4e-20) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>ctcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="147728" stop="146636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147429" g_stop="146936" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U595870" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147429" e_stop="146936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCATACAATGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAACTTCCGAGATGCAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAAACTATCAACAGTTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCGATTCTCT-CCACTTCCATTCCAGAATGGGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACGATTTGGACATTTCGCGAAAAACTCCACAATGTCATGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC</genome_strand>
        <mrna_strand>CTCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="147735" stop="5564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147435" g_stop="146944" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147435" e_stop="146944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCAGCATACAATGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAACTTCCGAGATGCAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAAACTATCAACAGTTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCGATTCTCT-CCACTTCCATTCCAGAATGGGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACGATTTGGACATTTCGCGAAAAACTCCACAATGTCATGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4101" PGL_stop="3776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4101" e_stop="3776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="4101" e_stop="3776" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4101" stop="3776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGATCTGTCCCAGGCTTGGCCAACGTCACAGTTTTAGCATTACAATCTAATATTGCAAAATTTGGAGAAAGACAAGTCATACCAAGATTTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCCCCACAAAAGTCACCAGACAAGACCTATATACCTTTTCAACTATCACGGACTCACCCACCGGAGTAGACACACGAATAGGCCTGTTAAGTAATTCACAAGGTAAATTAAGACCAGTAGTAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCAA</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  Q  R  H  S  F  S  I  T  I  *  Y  C  K  I  W  R  K  T  S  H  T  K  I  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  M  S  I  S  P  H  K  S  H  Q  T  R  P  I  Y  L  F  N  Y  H  G  L  T  H  R  S  R  H  T  N  R  P  V  K  *  F  T  R  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  A  R  I  K  *  Y  R  S  H  A  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  N  I  A  K  F  G  E  R  Q  V  I  P  R  F  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  D  T  R  I  G  L  L  S  N  S  Q  G  K  L  R  P  V  V  N  E  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  M  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  P  T  S  Q  F  *  H  Y  N  L  I  L  Q  N  L  E  K  D  K  S  Y  Q  D  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  E  Y  F  S  P  Q  K  S  P  D  K  T  Y  I  P  F  Q  L  S  R  T  H  P  P  E  *  T  H  E  *  A  C  *  V  I  H  K  V  N  *  D  Q  *  *  M  R  K  I  H  M  K  M  W  S  Q  D  Q  I  I  Q  K  P  C  N  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3968" stop="3777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLPTKVTRQDLYTFSTITDSPTGVDTRIGLLSNSQGKLRPVVNEEDTYENVEPGSNNTEAMQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3798" PGL_stop="4437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3798" e_stop="4437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="3798" e_stop="4437" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3798" stop="4437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGATCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTACTACTGGTCTTAATTTACCTTGTGAATTACTTAACAGGCCTATTCGTGTGTCTACTCCGGTGGGTGAGTCCGTGATAGTTGAAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGAAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAAATCTTGGTATGACTTGTCTTTCTCCAAATTTTGCAATATTAGATTGTAATGCTAAAACTGTGACGTTGGCCAAGCCTGGGACAGATCCTTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGTGTGTTTATCTTTCTTGGCACACCTTAGAGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTTGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAAACCTTCCTGGTATGCCACCGGATAGAGATATTGATTTTTGCATTAATCTGGAACCGGGTACTCGCCCCATTTCTATACTCCCTTATAGAATGGATCCCGCGGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTAGGAAAAAGCTTCATT</gDNA_template>
            <first_frame> I  *  S  W  L  H  I  F  I  C  I  F  L  I  Y  Y  W  S  *  F  T  L  *  I  T  *  Q  A  Y  S  C  V  Y  S  G  G  *  V  R  D  S  *  K  G  I  *  V  L  S  G  D  F  C  G  E  K  Y  S  C  R  L  G  Y  L  R  N  G  *  F  *  C  K  S  W  Y  D  L  S  F  S  K  F  C  N  I  R  L  *  C  *  N  C  D  V  G  Q  A  W  D  R  S  F  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  S  V  F  I  F  L  G  T  P  *  R  *  Y  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  S  G  C  V  S  C  K  P  S  W  Y  A  T  G  *  R  Y  *  F  L  H  *  S  G  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  G  V  K  G  S  T  S  R  V  V  R  K  K  L  H  </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  T  T  G  L  N  L  P  C  E  L  L  N  R  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  R  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  N  L  G  M  T  C  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  V  C  L  S  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  L  V  V  R  E  F  L  D  V  F  P  A  N  L  P  G  M  P  P  D  R  D  I  D  F  C  I  N  L  E  P  G  T  R  P  I  S  I  L  P  Y  R  M  D  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  S  F  I </second_frame>
            <third_frame>   L  I  L  A  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  L  V  N  Y  L  T  G  L  F  V  C  L  L  R  W  V  S  P  *  *  L  K  R  Y  I  G  L  V  W  *  L  L  W  G  E  I  L  M  *  T  W  L  S  *  K  W  L  I  L  M  *  I  L  V  *  L  V  F  L  Q  I  L  Q  Y  *  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  L  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  C  V  Y  L  S  W  H  T  L  E  M  I  L  P  K  Y  L  Q  L  S  R  F  W  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  I  F  A  L  I  W  N  R  V  L  A  P  F  L  Y  S  L  I  E  W  I  P  R  S  *  G  S  *  R  L  N  F  K  S  C  *  E  K  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3799" stop="4437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFTTGLNLPCELLNRPIRVSTPVGESVIVEKVYRSCLVTFVGRNTHVDLVILEMVDFDVNLGMTCLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSTPVRIISFLRAKRMVSKVCLSFLAHLRDDTTQVPSIESVLVVREFLDVFPANLPGMPPDRDIDFCINLEPGTRPISILPYRMDPAELRELKAQLQELLGKSFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="5778" PGL_stop="6529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5778" e_stop="6529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="5778" e_stop="6529" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5778" stop="6529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCGAGATAAGGTGTTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTAAGAATTAAGGGAAGGGTATGTGTACCCCGCATCGATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACACCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGAATGAAGCGTGACATTGTGGAGTTTGTCGCCAAATGTCCAAATTGTCAGGAAGTAAAGTATGAACACCAGAGGCCTGGAGGAACACTTCAGAGAATGCCCATTCTGGAATGGAAGTGGGAGAGAATTGCAATGGACTTCGTGGTTGGTCTTCCAAAGACAATGGGTAAGTACGACTCCATTTGGGTAATTTTTGACAGATTAACTAAGTTTGCTCATTTCATTCCGGTAAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTATATCTCGGAAGTTGTTCGATTGCATGGGGTTCGGTTCCACTCTCCATCATATCAGATAGAGGTACACAGTTTACTTCTAAGTTTTGGAGAACATTGCATGCTGAATTGGGTACTAGGTTGGATCTGAGTACCGCATTTCACCCTCAAACCAATGGTCAGTCTGAGCGAACGATTCAAGTGTTGGAGGATATGCTTCGTGCATGTGTGATAGAATTTGGTGGCCATGGGGATAACTTTTTACCCTTAGCAGAGTTCTCCTACAACAATAGCTATCACTCA</gDNA_template>
            <first_frame> I  R  D  K  V  L  R  G  E  A  K  E  A  Q  I  D  E  E  G  V  L  R  I  K  G  R  V  C  V  P  R  I  D  D  L  I  N  T  I  L  T  E  A  H  S  S  R  Y  S  I  H  P  G  A  T  K  M  Y  R  D  L  K  Q  H  F  W  W  S  R  M  K  R  D  I  V  E  F  V  A  K  C  P  N  C  Q  E  V  K  Y  E  H  Q  R  P  G  G  T  L  Q  R  M  P  I  L  E  W  K  W  E  R  I  A  M  D  F  V  V  G  L  P  K  T  M  G  K  Y  D  S  I  W  V  I  F  D  R  L  T  K  F  A  H  F  I  P  V  K  V  T  Y  N  A  E  K  L  A  K  L  Y  I  S  E  V  V  R  L  H  G  V  R  F  H  S  P  S  Y  Q  I  E  V  H  S  L  L  L  S  F  G  E  H  C  M  L  N  W  V  L  G  W  I  *  V  P  H  F  T  L  K  P  M  V  S  L  S  E  R  F  K  C  W  R  I  C  F  V  H  V  *  *  N  L  V  A  M  G  I  T  F  Y  P  *  Q  S  S  P  T  T  I  A  I  T   </first_frame>
            <second_frame>  S  E  I  R  C  C  E  E  R  L  R  K  H  K  S  M  R  K  V  F  *  E  L  R  E  G  Y  V  Y  P  A  S  M  I  *  S  T  L  F  *  Q  R  L  I  V  Q  G  I  L  Y  T  L  V  Q  P  R  C  I  V  T  *  S  N  I  F  G  G  V  E  *  S  V  T  L  W  S  L  S  P  N  V  Q  I  V  R  K  *  S  M  N  T  R  G  L  E  E  H  F  R  E  C  P  F  W  N  G  S  G  R  E  L  Q  W  T  S  W  L  V  F  Q  R  Q  W  V  S  T  T  P  F  G  *  F  L  T  D  *  L  S  L  L  I  S  F  R  *  R  *  L  T  M  Q  R  S  *  P  N  F  I  S  R  K  L  F  D  C  M  G  F  G  S  T  L  H  H  I  R  *  R  Y  T  V  Y  F  *  V  L  E  N  I  A  C  *  I  G  Y  *  V  G  S  E  Y  R  I  S  P  S  N  Q  W  S  V  *  A  N  D  S  S  V  G  G  Y  A  S  C  M  C  D  R  I  W  W  P  W  G  *  L  F  T  L  S  R  V  L  L  Q  Q  *  L  S  L  </second_frame>
            <third_frame>   P  R  *  G  V  A  R  R  G  *  G  S  T  N  R  *  G  R  C  F  K  N  *  G  K  G  M  C  T  P  H  R  *  F  D  Q  H  Y  S  D  R  G  S  *  F  K  V  F  Y  T  P  W  C  N  Q  D  V  S  *  P  K  A  T  F  L  V  E  *  N  E  A  *  H  C  G  V  C  R  Q  M  S  K  L  S  G  S  K  V  *  T  P  E  A  W  R  N  T  S  E  N  A  H  S  G  M  E  V  G  E  N  C  N  G  L  R  G  W  S  S  K  D  N  G  *  V  R  L  H  L  G  N  F  *  Q  I  N  *  V  C  S  F  H  S  G  K  G  D  L  Q  C  R  E  V  S  Q  T  L  Y  L  G  S  C  S  I  A  W  G  S  V  P  L  S  I  I  S  D  R  G  T  Q  F  T  S  K  F  W  R  T  L  H  A  E  L  G  T  R  L  D  L  S  T  A  F  H  P  Q  T  N  G  Q  S  E  R  T  I  Q  V  L  E  D  M  L  R  A  C  V  I  E  F  G  G  H  G  D  N  F  L  P  L  A  E  F  S  Y  N  N  S  Y  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5778" stop="6377"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRDKVLRGEAKEAQIDEEGVLRIKGRVCVPRIDDLINTILTEAHSSRYSIHPGATKMYRDLKQHFWWSRMKRDIVEFVAKCPNCQEVKYEHQRPGGTLQRMPILEWKWERIAMDFVVGLPKTMGKYDSIWVIFDRLTKFAHFIPVKVTYNAEKLAKLYISEVVRLHGVRFHSPSYQIEVHSLLLSFGEHCMLNWVLGWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="16986" PGL_stop="17323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16986" e_stop="17323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="16986" e_stop="17323" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16986" stop="17323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16986" stop="17223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16986" stop="17195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAGAAAATAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTTAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCTCATTTTATTTCCATTACTTTTACCATAGATACTTTTGTGATTGTCCGCGTTTTTCCAACAAACT</gDNA_template>
            <first_frame> E  K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  Y  C  I  R  D  Y  T  M  *  N  F  L  L  *  *  Y  Q  L  L  L  L  A  R  G  F  F  P  Y  L  E  G  F  P  R  K  I  L  G  V  V  I  F  S  F  Y  F  H  Y  F  Y  H  R  Y  F  C  D  C  P  R  F  S  N  K   </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  R  Y  S  I  D  Y  T  R  K  *  F  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  I  V  F  V  T  T  Q  C  K  I  S  Y  Y  N  N  I  N  C  S  S  W  P  V  V  F  S  L  I  *  K  G  F  H  V  K  F  L  V  S  L  F  S  H  F  I  S  I  T  F  T  I  D  T  F  V  I  V  R  V  F  P  T  N  </second_frame>
            <third_frame>   K  T  I  L  R  A  K  *  G  I  P  *  T  I  Q  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  H  N  V  K  F  L  T  I  I  I  S  I  A  P  L  G  P  W  F  F  P  L  F  R  R  V  S  T  *  N  S  W  C  R  Y  F  L  I  L  F  P  L  L  L  P  *  I  L  L  *  L  S  A  F  F  Q  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0004C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23770" PGL_stop="24440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23770" e_stop="24440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="23770" e_stop="24440" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23770" stop="24440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATGATTAACTAGGTTCTTGCTTTTCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCCGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGAGTGACTACAGGGCCTATAATGACGAGTTATCAGCATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTAGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTAGAACGATTTGCCATTGAGTTTGTGACCTATCAGTTTCAGGGGAACGCCAAAATGTGGTGGCGGTCATATGTTGAGTGTCAACCAACACAGGTACCACCTATCACTTGGGCATCATTCTCTAGATTATTTATGGAGAAGTATATACCCCAGACTTTGAGAGATAGTAGGAGAGATGAGTTCCTGAGCCTAGAGCAGGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTTCGTCCACAAGAGCGGATTGTCCGTTTTGTGAAGGGATTGAGGTCAGACTTGCAGATTCCAGCCTTACAGGTAGCTGCTGCAGCAAAATC</gDNA_template>
            <first_frame> E  M  I  N  *  V  L  A  F  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  T  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  V  T  T  G  P  I  M  T  S  Y  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  A  I  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  T  Q  V  P  P  I  T  W  A  S  F  S  R  L  F  M  E  K  Y  I  P  Q  T  L  R  D  S  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  R  P  Q  E  R  I  V  R  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A  A  A  A  K   </first_frame>
            <second_frame>  R  *  L  T  R  F  L  L  F  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  P  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  E  *  L  Q  G  L  *  *  R  V  I  S  M  N  F  S  L  N  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  *  L  I  V  M  S  C  Y  I  R  W  A  *  *  N  D  L  P  L  S  L  *  P  I  S  F  R  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  H  R  Y  H  L  S  L  G  H  H  S  L  D  Y  L  W  R  S  I  Y  P  R  L  *  E  I  V  G  E  M  S  S  *  A  *  S  R  A  G  C  R  L  L  L  M  R  L  S  F  V  H  Y  P  G  M  P  P  S  F  A  F  V  H  K  S  G  L  S  V  L  *  R  D  *  G  Q  T  C  R  F  Q  P  Y  R  *  L  L  Q  Q  N  </second_frame>
            <third_frame>   D  D  *  L  G  S  C  F  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  Y  T  S  T  S  G  S  G  S  T  T  C  S  R  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  E  L  S  A  *  T  F  H  *  I  L  E  V  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  S  *  L  S  *  V  A  T  *  D  G  H  S  R  T  I  C  H  *  V  C  D  L  S  V  S  G  E  R  Q  N  V  V  A  V  I  C  *  V  S  T  N  T  G  T  T  Y  H  L  G  I  I  L  *  I  I  Y  G  E  V  Y  T  P  D  F  E  R  *  *  E  R  *  V  P  E  P  R  A  G  Q  D  V  G  Y  C  L  *  G  *  V  S  C  T  I  Q  V  C  H  P  A  L  L  S  S  T  R  A  D  C  P  F  C  E  G  I  E  V  R  L  A  D  S  S  L  T  G  S  C  C  S  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23785" stop="24438"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAFLSGLSDQGQTPPVFSTPAPQVPGVQHAAAVAPRMDASLEIGTFPRVTTGPIMTSYQHELFTKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFAIEFVTYQFQGNAKMWWRSYVECQPTQVPPITWASFSRLFMEKYIPQTLRDSRRDEFLSLEQGRMSVTAYEAKFRALSRYATQLCFRPQERIVRFVKGLRSDLQIPALQVAAAAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="63582" PGL_stop="64330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63582" e_stop="64330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="63582" e_stop="64330" e_length="749"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63582" stop="64266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63758" stop="64330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGA</gDNA_template>
            <first_frame> C  *  E  I  P  S  *  F  P  Q  S  V  T  M  C  E  *  I  L  S  *  *  G  C  S  H  E  *  V  F  P  C  Y  C  V  A  R  M  P  Q  N  F  H  A  *  A  N  C  *  E  Y  V  S  I  S  D  C  V  S  L  E  V  L  V  P  T  L  F  L  S  M  N  A  R  K  P  T  C  *  L  K  H  Q  G  D  *  Q  H  D  I  K  T  L  *  A  A  R  S  A  M  A  *  A  *  S  V  G  R  T  F  Q  V  S  E  G  F  F  N  L  H  S  L  R  I  D  I  N  K  L  F  G  C  S  N  F  N  R  *  V  S  C  *  N  P  W  L  L  C  R  R  *  V  D  F  R  *  R  V  V  T  M  S  P  C  R  A  L  I  F  S  A  F  R  A  R  F  I  Q  *  N  L  A  *  D  W  I  A  F  S  Q  P  L  I  A  *  S  L  *  V  T  R  *  H  I  M  *  V  A  D  R  F  P  V  F  R  S  *  V  C  I  L  Y  F  S  S  Y  S  T  *  P  V  P  T  Q  L  L  N  G  F  I  P  W  H  F  K  A  S  I  T   </first_frame>
            <second_frame>  A  E  R  S  P  H  N  F  P  K  A  *  P  C  V  N  K  F  *  A  S  R  V  A  A  T  S  K  S  S  L  V  I  V  *  P  E  C  R  K  T  S  M  P  K  R  T  V  E  S  T  F  R  F  L  T  V  L  A  W  K  C  L  S  Q  P  C  F  *  A  *  T  P  A  S  Q  H  V  S  *  S  I  R  A  I  S  S  M  I  S  K  R  S  E  L  L  V  R  L  W  R  R  P  S  P  *  A  G  L  F  K  S  R  K  V  S  S  I  C  I  R  F  E  *  I  L  T  S  C  L  G  V  R  I  S  T  G  K  L  V  A  R  I  H  G  S  F  A  D  A  E  *  I  L  G  D  G  W  *  Q  *  V  R  V  E  R  *  F  F  R  P  L  E  R  D  L  Y  N  R  I  W  H  E  I  G  L  L  L  V  S  L  L  *  P  K  V  F  E  *  L  D  D  I  S  C  K  L  L  I  G  F  Q  F  S  A  P  R  S  A  Y  C  T  F  P  L  T  R  L  N  Q  Y  Q  P  S  F  S  T  D  L  Y  H  G  T  L  K  P  A  S  L  </second_frame>
            <third_frame>   L  R  D  P  L  I  I  S  P  K  R  N  H  V  *  I  N  F  E  L  V  G  L  Q  P  R  V  S  L  P  L  L  L  C  S  Q  N  A  A  K  L  P  C  L  S  E  L  L  R  V  R  F  D  F  *  L  C  *  P  G  S  A  C  P  N  L  V  S  E  H  E  R  P  Q  A  N  M  L  V  E  A  S  G  R  L  A  A  *  Y  Q  N  A  L  S  C  S  F  G  Y  G  V  G  L  V  R  R  Q  D  F  S  S  L  G  R  F  L  Q  S  A  F  A  S  N  R  Y  *  Q  V  V  W  V  F  E  F  Q  Q  V  S  *  L  L  E  S  M  A  P  L  P  T  L  S  R  F  *  V  T  G  G  D  N  E  S  V  S  S  A  D  F  F  G  L  *  S  E  I  Y  T  I  E  F  G  M  R  L  D  C  F  *  S  A  S  Y  S  L  K  S  L  S  D  *  M  T  Y  H  V  S  C  *  *  V  S  S  F  P  L  L  G  L  H  I  V  L  F  L  L  L  D  L  T  S  T  N  P  A  S  Q  R  I  Y  T  M  A  L  *  S  Q  H  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0004C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="64912" PGL_stop="64292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64912" e_stop="64292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="64912" e_stop="64292" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64912" stop="64690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64883" stop="64521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64821" stop="64292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCG</gDNA_template>
            <first_frame> L  M  N  P  L  M  I  F  I  K  I  I  K  L  R  *  I  H  I  L  S  Y  D  Q  M  V  S  P  K  I  N  N  Q  T  T  K  C  A  N  S  I  F  Y  T  T  L  F  T  N  S  A  P  N  Y  T  *  N  D  S  T  A  *  R  W  L  A  T  P  Y  L  T  V  K  L  S  L  L  P  N  L  A  V  T  C  Q  P  K  R  E  Q  N  I  T  S  N  E  S  T  D  C  *  V  I  V  T  S  T  K  S  D  S  L  Y  T  V  G  M  L  A  L  S  V  R  A  I  R  C  P  L  Y  L  L  T  G  L  I  S  V  S  K  N  G  L  W  Y  C  E  L  Q  S  H  Y  T  V  V  L  L  L  F  M  R  K  R  S  R  F  Q  S  N  V  Q  R  K  L  M  T  N  F  *  P  T  L  R  A  F  Y  R  V  T  P  H  R  S  L  S  V  M  L  A  L  K  C  H  G  I  N  P </first_frame>
            <second_frame>  *  *  I  P  *  *  F  L  S  K  S  L  S  *  G  R  Y  T  S  C  H  M  I  K  W  F  R  Q  K  S  I  I  R  Q  Q  N  V  R  T  R  Y  F  T  R  L  S  L  P  I  L  P  R  I  T  L  K  T  T  Q  Q  L  N  V  G  L  P  R  L  T  *  L  *  N  S  H  S  Y  R  T  W  P  *  P  A  N  Q  S  E  N  K  T  *  H  Q  T  N  R  P  I  V  R  *  S  S  P  P  Q  R  A  T  R  C  I  P  L  A  C  *  L  Y  L  F  G  Q  Y  D  A  H  C  T  C  *  L  V  *  Y  P  *  A  K  T  A  Y  G  I  A  S  F  S  R  T  T  R  S  F  C  Y  S  L  *  E  S  V  P  A  F  R  A  M  F  K  E  S  S  *  P  I  S  S  R  P  C  E  H  S  T  E  *  H  H  T  A  H  C  Q  *  C  W  L  *  S  A  M  V  *  I   </second_frame>
            <third_frame>   D  E  S  P  N  D  F  Y  Q  N  H  *  V  K  V  D  T  H  L  V  I  *  S  N  G  F  A  K  N  Q  *  S  D  N  K  M  C  E  L  D  I  L  H  D  S  L  Y  Q  F  C  P  E  L  H  L  K  R  L  N  S  L  T  L  A  C  H  A  L  L  D  C  K  T  L  T  L  T  E  L  G  R  N  L  P  T  K  A  R  T  K  H  N  I  K  R  I  D  R  L  L  G  N  R  H  L  H  K  E  R  L  A  V  Y  R  W  H  A  S  F  I  C  S  G  N  T  M  P  I  V  L  V  D  W  S  D  I  R  E  Q  K  R  L  M  V  L  R  A  S  V  A  L  H  G  R  S  V  T  L  Y  E  K  A  F  P  L  S  E  Q  C  S  K  K  A  H  D  Q  F  L  A  D  L  A  S  I  L  P  S  N  T  T  P  L  I  V  S  D  A  G  F  K  V  P  W  Y  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64817" stop="64293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNKMCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVSDAGFKVPWYKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="130544" PGL_stop="131744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130544" e_stop="131744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="130544" e_stop="131744" e_length="1201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130544" stop="131744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACTCCAAAATTAATTTCTCAAATTATAAAGTGAGACATAGCTATTATCCTATTGAATCACTTTTCTTCTCCCTTTAATTTCAATTTCAATTGATAATTTGGGCAGGCCAAGCATACAAAAATTAGAATTTTTTTCATTGATTTAAAATGCTTAAGCAAAGCAAAATCACCAAATTCCACTATTACAGCTTAGTTGAGCACTCATAAATGGTTATGGTGCTATATAGACTAAAAACAATCTCCGTACTCCTAATCTTTTTCTTCTTTGAAAATGATTAGAAGCTAAAAAAACACAAGTCGAATCCAGATCTCAAAACTCATATGAGCAGACAACAGTTCTTAAAGTTGAATTTTATGGTAAATTTTTATAGCTCGAACAATACGACCACGCATAATCAAACTCAGATCTCAAAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCATTAGTAGTGTTATAACTCACCAAAACACTTAATCATTAACGCAGGTTCAATGGACAAAATGGACGGAGATGCAGATGAAACGCAATCGCAAGGGCCGCCGAGATTTGTGTCGATTTCTCAGAGAGTCAGAGTAAAAGGAGAACAAAAGGAGACGTCGGAGCAAGGGAGAAGAAAAAGGGGGGGGTGGGGTTGGGATCCTTAATCTATTTTTTCCTTTTTTTCTTTTTATTATTAATTTTTTTTAAAGAAAATTAATTGCTATCACTCGCCTTTTTAAGTGTGATACCATGCGCTATAAATGAGTCAGCAAAATAAATGTCACATAAACTTAATCAACGATCAAAGGGTTTAAAAATCTCATTTTGATTGAGTTGAAGGGTTCAGTTGACAAAAGATTAAGTAGAAGGGTTTACAATATAAATTCATACAATTATAAGGGTCTATTAGACCATTTCGCCTATTTATTTTAAATAGGTTAAAAAATGGTTACAAATAAATGAAAATAAGGGAGGTAGATGTAATTTTGTAAACCATAGGGGAGGTGAGTGTTATAGAGCGAAACTTGGAGCGAGGTCTCTGAAATTATCCTTTTTGTAAGTATATTCAATATTATTCTGAAATATCAATGACATTACTACAT</gDNA_template>
            <first_frame> K  N  S  K  I  N  F  S  N  Y  K  V  R  H  S  Y  Y  P  I  E  S  L  F  F  S  L  *  F  Q  F  Q  L  I  I  W  A  G  Q  A  Y  K  N  *  N  F  F  H  *  F  K  M  L  K  Q  S  K  I  T  K  F  H  Y  Y  S  L  V  E  H  S  *  M  V  M  V  L  Y  R  L  K  T  I  S  V  L  L  I  F  F  F  F  E  N  D  *  K  L  K  K  H  K  S  N  P  D  L  K  T  H  M  S  R  Q  Q  F  L  K  L  N  F  M  V  N  F  Y  S  S  N  N  T  T  T  H  N  Q  T  Q  I  S  K  Q  K  E  I  Y  E  *  N  G  R  I  K  L  *  E  Q  N  R  H  Q  K  N  S  I  T  *  P  P  Q  K  T  H  N  H  W  S  E  I  S  R  I  V  Q  H  L  K  L  S  L  V  V  L  *  L  T  K  T  L  N  H  *  R  R  F  N  G  Q  N  G  R  R  C  R  *  N  A  I  A  R  A  A  E  I  C  V  D  F  S  E  S  Q  S  K  R  R  T  K  G  D  V  G  A  R  E  K  K  K  G  G  V  G  L  G  S  L  I  Y  F  F  L  F  F  F  L  L  L  I  F  F  K  E  N  *  L  L  S  L  A  F  L  S  V  I  P  C  A  I  N  E  S  A  K  *  M  S  H  K  L  N  Q  R  S  K  G  L  K  I  S  F  *  L  S  *  R  V  Q  L  T  K  D  *  V  E  G  F  T  I  *  I  H  T  I  I  R  V  Y  *  T  I  S  P  I  Y  F  K  *  V  K  K  W  L  Q  I  N  E  N  K  G  G  R  C  N  F  V  N  H  R  G  G  E  C  Y  R  A  K  L  G  A  R  S  L  K  L  S  F  L  *  V  Y  S  I  L  F  *  N  I  N  D  I  T  T  </first_frame>
            <second_frame>  K  T  P  K  L  I  S  Q  I  I  K  *  D  I  A  I  I  L  L  N  H  F  S  S  P  F  N  F  N  F  N  *  *  F  G  Q  A  K  H  T  K  I  R  I  F  F  I  D  L  K  C  L  S  K  A  K  S  P  N  S  T  I  T  A  *  L  S  T  H  K  W  L  W  C  Y  I  D  *  K  Q  S  P  Y  S  *  S  F  S  S  L  K  M  I  R  S  *  K  N  T  S  R  I  Q  I  S  K  L  I  *  A  D  N  S  S  *  S  *  I  L  W  *  I  F  I  A  R  T  I  R  P  R  I  I  K  L  R  S  Q  N  K  K  K  S  M  N  R  M  G  E  S  S  Y  R  S  K  I  A  T  K  K  I  A  S  H  N  H  H  K  R  L  I  T  T  G  A  K  S  A  V  L  F  N  I  *  N  F  H  *  *  C  Y  N  S  P  K  H  L  I  I  N  A  G  S  M  D  K  M  D  G  D  A  D  E  T  Q  S  Q  G  P  P  R  F  V  S  I  S  Q  R  V  R  V  K  G  E  Q  K  E  T  S  E  Q  G  R  R  K  R  G  G  W  G  W  D  P  *  S  I  F  S  F  F  S  F  Y  Y  *  F  F  L  K  K  I  N  C  Y  H  S  P  F  *  V  *  Y  H  A  L  *  M  S  Q  Q  N  K  C  H  I  N  L  I  N  D  Q  R  V  *  K  S  H  F  D  *  V  E  G  F  S  *  Q  K  I  K  *  K  G  L  Q  Y  K  F  I  Q  L  *  G  S  I  R  P  F  R  L  F  I  L  N  R  L  K  N  G  Y  K  *  M  K  I  R  E  V  D  V  I  L  *  T  I  G  E  V  S  V  I  E  R  N  L  E  R  G  L  *  N  Y  P  F  C  K  Y  I  Q  Y  Y  S  E  I  S  M  T  L  L  H </second_frame>
            <third_frame>   K  L  Q  N  *  F  L  K  L  *  S  E  T  *  L  L  S  Y  *  I  T  F  L  L  P  L  I  S  I  S  I  D  N  L  G  R  P  S  I  Q  K  L  E  F  F  S  L  I  *  N  A  *  A  K  Q  N  H  Q  I  P  L  L  Q  L  S  *  A  L  I  N  G  Y  G  A  I  *  T  K  N  N  L  R  T  P  N  L  F  L  L  *  K  *  L  E  A  K  K  T  Q  V  E  S  R  S  Q  N  S  Y  E  Q  T  T  V  L  K  V  E  F  Y  G  K  F  L  *  L  E  Q  Y  D  H  A  *  S  N  S  D  L  K  T  K  R  N  L  *  I  E  W  A  N  Q  A  I  G  A  K  S  P  P  K  K  *  H  H  I  T  T  T  K  D  S  *  P  L  E  R  N  Q  P  Y  C  S  T  S  E  T  F  I  S  S  V  I  T  H  Q  N  T  *  S  L  T  Q  V  Q  W  T  K  W  T  E  M  Q  M  K  R  N  R  K  G  R  R  D  L  C  R  F  L  R  E  S  E  *  K  E  N  K  R  R  R  R  S  K  G  E  E  K  G  G  G  G  V  G  I  L  N  L  F  F  P  F  F  L  F  I  I  N  F  F  *  R  K  L  I  A  I  T  R  L  F  K  C  D  T  M  R  Y  K  *  V  S  K  I  N  V  T  *  T  *  S  T  I  K  G  F  K  N  L  I  L  I  E  L  K  G  S  V  D  K  R  L  S  R  R  V  Y  N  I  N  S  Y  N  Y  K  G  L  L  D  H  F  A  Y  L  F  *  I  G  *  K  M  V  T  N  K  *  K  *  G  R  *  M  *  F  C  K  P  *  G  R  *  V  L  *  S  E  T  W  S  E  V  S  E  I  I  L  F  V  S  I  F  N  I  I  L  K  Y  Q  *  H  Y  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131112" stop="131306"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYNSPKHLIINAGSMDKMDGDADETQSQGPPRFVSISQRVRVKGEQKETSEQGRRKRGGWGWDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="150773" PGL_stop="139471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147435" e_stop="146399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="147435" e_stop="146399" e_length="1037"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147435" stop="146944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147429" stop="146936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146986" stop="146399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTCAGCATACAATGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAACTTCCGAGATGCAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAAACTATCAACAGTTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCACTTCCATTCCAGAATGGGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACGATTTGGACATTTCGCGAAAAACTCCACAATGTCATGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGGTTGTTGCTTCTTTAGCCTCTCCTCGCAACACTTTATCTCGGATCCGGATCAATTTCTCATCAGTAAAGTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAAATCATTAGCCAGAGTATGAAACTCTCTAGCCAATGGGCGTCTAGAAACTTGCAAGTGATCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCCTTCTGAGTAAAGACATATTGTAGGCTACGATGGTCCGTATAGACTTCACACTTAACCCCATATAGATAGTGCCTCCATTGCTTTAATGCAAACACTACCGCGGCCAACTCCAAATCATGGGTCGGATAGTTACATTCATGCACTTTTAATTG</gDNA_template>
            <first_frame> T  Q  F  S  I  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  Q  S  N  N  F  R  D  A  K  F  G  *  L  L  C  I  V  S  H  L  D  R  N  E  V  S  R  L  S  *  T  I  N  S  Y  P  N  G  V  I  L  T  H  C  L  G  K  T  N  H  E  V  H  C  D  S  L  H  F  H  S  R  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  R  F  G  H  F  A  K  N  S  T  M  S  C  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  V  V  A  S  L  A  S  P  R  N  T  L  S  R  I  R  I  N  F  S  S  V  K  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  N  L  I  K  S  L  A  R  V  *  N  S  L  A  N  G  R  L  E  T  C  K  *  S  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  R  L  R  W  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  H  S  C  T  F  N   </first_frame>
            <second_frame>  P  N  S  A  Y  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  T  S  E  M  Q  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  K  L  S  T  V  T  Q  M  E  S  Y  L  P  I  V  L  G  R  P  T  T  K  S  I  A  I  L  S  T  S  I  P  E  W  A  F  S  E  V  F  L  Q  A  S  G  V  H  T  L  L  A  D  D  L  D  I  S  R  K  T  P  Q  C  H  A  S  F  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  S  S  K  H  L  P  H  R  L  L  L  L  *  P  L  L  A  T  L  Y  L  G  S  G  S  I  S  H  Q  *  S  A  F  P  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  T  S  *  N  H  *  P  E  Y  E  T  L  *  P  M  G  V  *  K  L  A  S  D  L  D  F  P  C  F  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  D  D  T  R  *  *  Y  R  S  P  S  V  V  P  S  I  S  S  V  S  S  S  N  P  S  E  *  R  H  I  V  G  Y  D  G  P  Y  R  L  H  T  *  P  H  I  D  S  A  S  I  A  L  M  Q  T  L  P  R  P  T  P  N  H  G  S  D  S  Y  I  H  A  L  L  I  </second_frame>
            <third_frame>   P  I  Q  H  T  M  F  S  K  T  *  K  *  I  A  Y  L  Y  L  I  *  W  R  V  E  P  H  A  I  E  Q  L  P  R  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  L  N  Y  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  W  E  D  Q  P  R  S  P  L  R  F  S  P  L  P  F  Q  N  G  H  S  L  K  C  S  S  R  P  L  V  F  I  L  Y  L  L  T  I  W  T  F  R  E  K  L  H  N  V  M  L  H  S  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  P  Q  N  T  F  L  I  G  C  C  F  F  S  L  S  S  Q  H  F  I  S  D  P  D  Q  F  L  I  S  K  V  L  S  L  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  I  Y  F  *  P  H  K  I  I  S  Q  S  M  K  L  S  S  Q  W  A  S  R  N  L  Q  V  I  *  T  S  H  A  S  C  L  S  T  *  S  I  C  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  V  V  L  Q  *  F  H  P  S  P  L  S  Q  V  Q  I  L  L  S  K  D  I  L  *  A  T  M  V  R  I  D  F  T  L  N  P  I  *  I  V  P  P  L  L  *  C  K  H  Y  R  G  Q  L  Q  I  M  G  R  I  V  T  F  M  H  F  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147275" stop="147003"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADLVKLSTVTQMESYLPIVLGRPTTKSIAILSTSIPEWAFSEVFLQASGVHTLLADDLDISRKTPQCHASFYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146964" stop="146725"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILKTPSSSVVASLASPRNTLSRIRINFSSVKCFPLILSRKEDLASTQAKNPPFSFTSNLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146992" stop="146753"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVNQIIDAGYTYPSLNPQNTFLIGCCFFSLSSQHFISDPDQFLISKVLSLNLVKKGRSCLHTGQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147265" stop="147038"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNYQQLPKWSHTYPLSWEDQPRSPLRFSPLPFQNGHSLKCSSRPLVFILYLLTIWTFREKLHNVMLHSTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="145179" e_stop="144854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="145179" e_stop="144854" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145179" stop="144854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATCTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCACCCATTTCTAAGATAACCAAGTCTACATAATTATTACTCCCCACAAAAGTCACCAGACAAGACCTATATACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGAATGTTAAGCAATTCACAAGGTAAATTAAGACCAGTATCAAATGAGGAATATACATATGAAAATATGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCAC</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  *  D  Y  K  I  W  R  K  P  S  H  T  Q  N  Y  I  K  I  T  H  F  *  D  N  Q  V  Y  I  I  I  T  P  H  K  S  H  Q  T  R  P  I  Y  P  F  N  Y  H  R  L  T  H  R  S  R  H  T  N  R  N  V  K  Q  F  T  R  *  I  K  T  S  I  K  *  G  I  Y  I  *  K  Y  G  A  R  I  K  *  Y  R  S  H  A  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  T  K  S  G  E  S  Q  V  I  P  R  I  T  S  K  S  P  I  S  K  I  T  K  S  T  *  L  L  L  P  T  K  V  T  R  Q  D  L  Y  T  L  S  T  I  T  D  S  P  T  G  V  D  T  R  I  G  M  L  S  N  S  Q  G  K  L  R  P  V  S  N  E  E  Y  T  Y  E  N  M  E  P  G  S  N  N  T  E  A  M  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  S  L  H  N  Y  Y  S  P  Q  K  S  P  D  K  T  Y  I  P  F  Q  L  S  Q  T  H  P  P  E  *  T  H  E  *  E  C  *  A  I  H  K  V  N  *  D  Q  Y  Q  M  R  N  I  H  M  K  I  W  S  Q  D  Q  I  I  Q  K  P  C  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145046" stop="144855"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLPTKVTRQDLYTLSTITDSPTGVDTRIGMLSNSQGKLRPVSNEEYTYENMEPGSNNTEAMQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="150773" e_stop="150423"/>
            <exon e_start="141624" e_stop="141559"/>
            <exon e_start="141068" e_stop="140373"/>
            <exon e_start="140300" e_stop="139471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.872"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.621"/>
          <exon-intron don_prob="0.968" acc_prob="0.756" e_score="0.905"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.872">
            <gDNA_exon_boundary e_start="150773" e_stop="150423" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="150422" i_stop="141625" i_length="8798"/>
          </intron>
          <exon e_serial="2" e_score="0.621">
            <gDNA_exon_boundary e_start="141624" e_stop="141559" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="141558" i_stop="141069" i_length="490"/>
          </intron>
          <exon e_serial="3" e_score="0.905">
            <gDNA_exon_boundary e_start="141068" e_stop="140373" e_length="696"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.756">
            <gDNA_intron_boundary i_start="140372" i_stop="140301" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.936">
            <gDNA_exon_boundary e_start="140300" e_stop="139471" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150773" stop="150423"/>
              <exon start="141624" stop="141559"/>
              <exon start="141068" stop="140373"/>
              <exon start="140300" stop="139471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACACATTTCTTGCTTGAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAGATTCTGAAAATTTTCCTTTTTCTGCATATATTTTTCACTCAAATAAATCAAAGTGGCGATCGACTGAGTCTGTGTGACTTGTTGCTGTCTGAAGTTTGCTGAATTTAAAGAAATTTGAGGTACCGCTATTTCTTTAATAGGTTTGATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTATAGTGACGGGATTAAAGTTCTTAATGACGCACAGTAGTTTCTGTGGAGTCGGATTACTTCTTGTATTTTATGTATTTCCTGCTCCATCTTATTTCAGTTTCTATTTT : TTACCCTAATTATCATATAATTAAGTATAAAAGATGACAAAGTAACCCACTAATTAATTCAAGGTT : CTGTATTTGAGGTTTCAGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGAGTAAAAGAACATAAAAACATTATCGTTAAATCAGAAATAGTTTGTGTAAAGATTTGATCTTTACTGTTAGTATTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTAGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGGTCAAATACTGTCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTATAAGAGATGACAGCAAAAGATGTTCTTCTATCTCATTACGTTCATTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGCGTGATGAACGATTCTTGGTAACAGAATCATGGACACGCTCAAATTTTTAGTGTAAAAATCATATTCTGAGTGATCGGCAAAATGATCTGTACAATGTGTACAACAATGTCAAAACCTCAACAGAACTCTGGATGCTTTAGAAAAAAAGTACAAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAAATTATACACAATAAGACCGTCGTCAACCAAGTTCAATAATTGTAGGTCATAATCCATGATCTCCTTCTTGAAG : GATTGATTGTGAATGATGTCTTTTAAGTGGCTACAATTATTGAAAAGTTACCTCTTTTGTGGAAGGACTTCAAAAACTACTTGAAACACAAACGCAAGGAGATAACTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTAGTATTTCAGCAATATCTAGAGCAAATTTTGTTGAAGAAGATCTCACACAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGAAAAATGCTTCAACTGTGGTAAACATGGTCATAAGGCTACTGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGTAAACTTGGTTGAATCCAAAGGAGAAATGGTCGATCTTGTGCAACGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATAACATGTTTGTGCCAAAAAAGAATTATTTTCATCATATACTCCAACACTTACAGATGAGAAGTTGTTTATGGCAAACTCGACTGTTGCAAAGGTGGAAGGAACTGACAAAGTCTTATTATATATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTT</gDNA_template>
            <first_frame> Q  T  H  F  L  L  E  M  A  I  K  G  S  Q  F  L  I  F  *  I  L  K  I  F  L  F  L  H  I  F  F  T  Q  I  N  Q  S  G  D  R  L  S  L  C  D  L  L  L  S  E  V  C  *  I  *  R  N  L  R  Y  R  Y  F  F  N  R  F  D  P  F  Y  L  E  R  N  *  S  I  T  L  G  I  V  T  G  L  K  F  L  M  T  H  S  S  F  C  G  V  G  L  L  L  V  F  Y  V  F  P  A  P  S  Y  F  S  F  Y  F  :  L  P  *  L  S  Y  N  *  V  *  K  M  T  K  *  P  T  N  *  F  K  V  :  L  Y  L  R  F  Q  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  E  *  K  N  I  K  T  L  S  L  N  Q  K  *  F  V  *  R  F  D  L  Y  C  *  Y  S  N  T  *  L  I  C  H  L  *  Q  K  K  K  T  N  S  S  Q  T  N  A  R  T  I  S  A  A  T  T  S  V  A  H  N  R  S  N  T  V  L  A  P  A  E  K  P  A  K  F  S  G  V  D  Y  K  R  *  Q  Q  K  M  F  F  Y  L  I  T  F  I  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  S  R  D  E  R  F  L  V  T  E  S  W  T  R  S  N  F  *  C  K  N  H  I  L  S  D  R  Q  N  D  L  Y  N  V  Y  N  N  V  K  T  S  T  E  L  W  M  L  *  K  K  S  T  K  T  E  D  V  G  M  K  K  F  I  V  A  K  F  L  D  Y  K  L  Y  T  I  R  P  S  S  T  K  F  N  N  C  R  S  *  S  M  I  S  F  L  K  :  D  *  L  *  M  M  S  F  K  W  L  Q  L  L  K  S  Y  L  F  C  G  R  T  S  K  T  T  *  N  T  N  A  R  R  *  L  L  K  I  S  *  *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  F  Q  Q  Y  L  E  Q  I  L  L  K  K  I  S  H  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  K  N  A  S  T  V  V  N  M  V  I  R  L  L  N  A  G  V  L  R  R  T  R  K  R  R  I  K  *  T  W  L  N  P  K  E  K  W  S  I  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  I  T  C  L  C  Q  K  R  I  I  F  I  I  Y  S  N  T  Y  R  *  E  V  V  Y  G  K  L  D  C  C  K  G  G  R  N  *  Q  S  L  I  I  Y  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  Y  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  F  F   </first_frame>
            <second_frame>  R  H  I  S  C  L  K  W  L  *  K  E  V  N  F  *  F  F  R  F  *  K  F  S  F  F  C  I  Y  F  S  L  K  *  I  K  V  A  I  D  *  V  C  V  T  C  C  C  L  K  F  A  E  F  K  E  I  *  G  T  A  I  S  L  I  G  L  I  R  F  I  L  R  E  I  N  P  *  P  W  V  *  *  R  D  *  S  S  *  *  R  T  V  V  S  V  E  S  D  Y  F  L  Y  F  M  Y  F  L  L  H  L  I  S  V  S  I  F :   Y  P  N  Y  H  I  I  K  Y  K  R  *  Q  S  N  P  L  I  N  S  R  F :   C  I  *  G  F  R  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  S  K  R  T  *  K  H  Y  R  *  I  R  N  S  L  C  K  D  L  I  F  T  V  S  I  Q  I  L  N  L  S  V  I  C  D  R  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  H  R  L  H  I  I  G  Q  I  L  S  *  R  R  L  R  N  L  Q  N  F  L  E  S  T  I  R  D  D  S  K  R  C  S  S  I  S  L  R  S  F  C  R  S  S  L  M  R  M  F  L  L  C  Q  M  K  L  R  V  M  N  D  S  W  *  Q  N  H  G  H  A  Q  I  F  S  V  K  I  I  F  *  V  I  G  K  M  I  C  T  M  C  T  T  M  S  K  P  Q  Q  N  S  G  C  F  R  K  K  V  Q  K  Q  K  M  S  E  *  R  N  S  L  W  Q  N  F  W  T  I  N  Y  T  Q  *  D  R  R  Q  P  S  S  I  I  V  G  H  N  P  *  S  P  S  *  R :   I  D  C  E  *  C  L  L  S  G  Y  N  Y  *  K  V  T  S  F  V  E  G  L  Q  K  L  L  E  T  Q  T  Q  G  D  N  C  *  R  S  H  S  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  *  Y  F  S  N  I  *  S  K  F  C  *  R  R  S  H  T  I  K  E  K  K  E  N  I  W  S  K  K  Q  S  S  *  E  E  I  Q  *  K  M  L  Q  L  W  *  T  W  S  *  G  Y  *  M  P  G  S  *  E  G  Q  E  K  E  G  S  S  K  L  G  *  I  Q  R  R  N  G  R  S  C  A  T  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  F  G  A  S  *  H  V  C  A  K  K  E  L  F  S  S  Y  T  P  T  L  T  D  E  K  L  F  M  A  N  S  T  V  A  K  V  E  G  T  D  K  V  L  L  Y  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  K  C  V  F  V  F  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S  </second_frame>
            <third_frame>   D  T  F  L  A  *  N  G  Y  K  R  K  S  I  F  D  F  L  D  S  E  N  F  P  F  S  A  Y  I  F  H  S  N  K  S  K  W  R  S  T  E  S  V  *  L  V  A  V  *  S  L  L  N  L  K  K  F  E  V  P  L  F  L  *  *  V  *  S  V  L  S  *  E  K  L  I  H  N  L  G  Y  S  D  G  I  K  V  L  N  D  A  Q  *  F  L  W  S  R  I  T  S  C  I  L  C  I  S  C  S  I  L  F  Q  F  L  F   : F  T  L  I  I  I  *  L  S  I  K  D  D  K  V  T  H  *  L  I  Q  G   : S  V  F  E  V  S  G  D  *  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  V  K  E  H  K  N  I  I  V  K  S  E  I  V  C  V  K  I  *  S  L  L  L  V  F  K  Y  L  T  Y  L  S  F  V  T  E  K  K  D  *  F  K  S  N  K  C  *  N  N  K  C  C  N  N  I  G  C  T  *  S  V  K  Y  C  L  S  A  G  *  E  T  C  K  I  F  W  S  R  L  *  E  M  T  A  K  D  V  L  L  S  H  Y  V  H  S  A  E  V  H  *  *  E  C  S  C  Y  V  R  *  N  F  A  *  *  T  I  L  G  N  R  I  M  D  T  L  K  F  L  V  *  K  S  Y  S  E  *  S  A  K  *  S  V  Q  C  V  Q  Q  C  Q  N  L  N  R  T  L  D  A  L  E  K  K  Y  K  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  I  I  H  N  K  T  V  V  N  Q  V  Q  *  L  *  V  I  I  H  D  L  L  L  E   : G  L  I  V  N  D  V  F  *  V  A  T  I  I  E  K  L  P  L  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  I  T  V  E  D  L  I  V  R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  S  I  S  A  I  S  R  A  N  F  V  E  E  D  L  T  Q  L  K  K  R  K  K  T  S  G  P  K  S  N  P  P  K  K  K  F  N  E  K  C  F  N  C  G  K  H  G  H  K  A  T  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  V  N  L  V  E  S  K  G  E  M  V  D  L  V  Q  R  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  N  M  F  V  P  K  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  R  S  C  L  W  Q  T  R  L  L  Q  R  W  K  E  L  T  K  S  Y  Y  I  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  L  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  A  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140274" stop="139840"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VATIIEKLPLLWKDFKNYLKHKRKEITVEDLIVRLRIEEDNKAAEKRSRSISAISRANFVEEDLTQLKKRKKTSGPKSNPPKKKFNEKCFNCGKHGHKATECRGPKKDKKKKDQVNLVESKGEMVDLVQRFQNVTWLEIQENGG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139822" stop="139472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVCAKKELFSSYTPTLTDEKLFMANSTVAKVEGTDKVLLYMTSGKVVTLNRVSYVPELRKNLVSIPVLTKNGFKCVFVFDKVVVSKNDMYVGKGYLSDGLFKLNVIAVDMNKDFASS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="141202" PGL_stop="141583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141202" e_stop="141583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="141202" e_stop="141583" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141202" stop="141583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACGGACCATCAAGGGCACGACGGACCGTCGAGGGGGTCCCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGATATCGACTCTCTGAACTTCGCGACGAAATAGCAGGATGGACCGTCATAGGCGTGACGGGCCATCACAGACCCTTAGTAAAATTTAGTCTCTGAACTCTGTGACGAAAGCAGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGCTGCGTAACCCTGGCTGGGTCGTATTTCTGTTTAATGTTTTAAGGGGCGTTTTGGTCTATTCCTGCTTATAATTATAAAGTTAGTGGTTGAATATTAATAATTCGATTTCTTGGGGGTTAAAGGAGATAACCTTGAATTAATTAGTGGGTTAC</gDNA_template>
            <first_frame> R  R  T  I  K  G  T  T  D  R  R  G  G  P  V  P  K  H  L  E  F  *  N  L  G  T  D  I  D  S  L  N  F  A  T  K  *  Q  D  G  P  S  *  A  *  R  A  I  T  D  P  *  *  N  L  V  S  E  L  C  D  E  S  S  R  T  D  R  R  R  H  D  G  P  S  Q  A  A  *  P  W  L  G  R  I  S  V  *  C  F  K  G  R  F  G  L  F  L  L  I  I  I  K  L  V  V  E  Y  *  *  F  D  F  L  G  V  K  G  D  N  L  E  L  I  S  G  L  </first_frame>
            <second_frame>  D  G  P  S  R  A  R  R  T  V  E  G  V  P  F  Q  N  T  *  N  S  E  I  W  V  L  I  S  T  L  *  T  S  R  R  N  S  R  M  D  R  H  R  R  D  G  P  S  Q  T  L  S  K  I  *  S  L  N  S  V  T  K  A  A  G  R  T  V  A  G  T  T  G  H  H  R  L  R  N  P  G  W  V  V  F  L  F  N  V  L  R  G  V  L  V  Y  S  C  L  *  L  *  S  *  W  L  N  I  N  N  S  I  S  W  G  L  K  E  I  T  L  N  *  L  V  G  Y </second_frame>
            <third_frame>   T  D  H  Q  G  H  D  G  P  S  R  G  S  R  S  K  T  L  R  I  L  K  F  G  Y  *  Y  R  L  S  E  L  R  D  E  I  A  G  W  T  V  I  G  V  T  G  H  H  R  P  L  V  K  F  S  L  *  T  L  *  R  K  Q  Q  D  G  P  S  Q  A  R  R  A  I  T  G  C  V  T  L  A  G  S  Y  F  C  L  M  F  *  G  A  F  W  S  I  P  A  Y  N  Y  K  V  S  G  *  I  L  I  I  R  F  L  G  G  *  R  R  *  P  *  I  N  *  W  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0004C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 133 chains have been computed
$ 
$ memory statistics:
$ 322648 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 16981 bytes was the average size of a spliced alignment
$ 16384 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1638 bytes was the average size of a predicted gene location
$ 13 megabytes was the average size of the backtrace matrix
$ 165 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:57:16
-->
