<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:41:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1756" stop="2641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2056" g_stop="2341" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2056" e_stop="2341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCCTTCTTTCGTGCTATTACTTAGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCTCAGATGGTTAGGACTAGAGCAACGACTGCGCCAACACCAACACCGGCAAGGCAAGATGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372777" ref_strand="+" ref_description="SGN-E372777 [TUS-32-L20](-)">
      <seq>gaaaaaccactttgagagcaaagtaagatattctgtagactatacaagaaaaagtagtttgtgaagaaaaatacagtgtgagtgatattttagtaagatgaaaaccaaaagagtgttgttccttttgagtgtgtagtagtcactttgagtattgtatttgtgactacacgatgtaaaattccttactatagtaatatcagttgctcttcttggcccgcagttttttccttattgagaagggtttccacgtacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16686" stop="17538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16986" g_stop="17232" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="251" polyA_stop="262"/>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E372777" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16986" e_stop="17232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAG-AAAA-TAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTTAGAAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTT-CCTTATTGAGAAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294067" ref_strand="+" ref_description="SGN-E294067 [cLET-13-K21]">
      <seq>aaaaaccactttgagagcaaagtaagatattctgtagactatacaagaaaaagtagtttgtgaagaaaaatacagtgtgagtgatattttagtaagatgaaaaccaaaagagtgttgttccttttgagtgtgtagtagtcactttgagtattgtatttgtgactacacgatgtaaaattccttactatagtaatatcagttgctcttcttggcccgcagttttttccttattgagaagggtttccacgtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16687" stop="17538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16987" g_stop="17232" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="250" polyA_stop="262"/>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E294067" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16987" e_stop="17232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAG-AAAA-TAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTTAGAAGGGTTTCCAC</genome_strand>
        <mrna_strand>AAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTT-CCTTATTGAGAAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372778" ref_strand="+" ref_description="SGN-E372778 [TUS-32-L20]">
      <seq>aaaaaccactttgagagcaaagtaagatattctgtagactatacaagaaaaagtagtttgtgaagaaaaatacagtgtgagtgatattttagtaagatgaaaaccaaaagagtgttgttccttttgagtgtgtagtagtcactttgagtattgtatttgtgactacacgatgtaaaattccttactatagtaatatcagttgctcttcttggcccgcagttttttccttattgagaagggtttccacgtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16687" stop="17538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16987" g_stop="17232" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="250" polyA_stop="262"/>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E372778" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16987" e_stop="17232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAG-AAAA-TAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTTAGAAGGGTTTCCAC</genome_strand>
        <mrna_strand>AAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTT-CCTTATTGAGAAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16687" stop="17493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16987" g_stop="17193" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16987" e_stop="17193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAG-AAAATAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="23471" stop="24726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23771" g_stop="24426" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23771" e_stop="24426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACTAGGTTCTTGCTTTTCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCCGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGAGTGACTACAGGGCCTATAATGACGAGTTATCAGCATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTAGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTAGAACGATTTGCCATTGAGTTTGTGACCTATCAGTTTCAGGGGAACGCCAAAATGTGGTGGCGGTCATATGTTGAGTGTCAACCAACACAGGTACCACCTATCACTTGGGCATCATTCTCTAGATTATTTATGGAGAAGTATATACCCCAGACTTTGAGAGATAGTAGGAGAGATGAGTTCCTGAGCCTAGAGCAGGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTTCGTCCACAAGAGCGGATTGTCCGTTTTGTGAAGGGATTGAGGTCAGACTTGCAGATTCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543766" ref_strand="+" ref_description="SGN-E543766 [TUS-65-M1]">
      <seq>aaaactccaaaattaatttctcaaattataaagtgagacatagctattatcctattgaatcacttttcttctccctttaatttcaatttcaattgataatttgggcaggccaagcatacaaaaattagaatttttttcattgatttaaaatgcttaagcaaagcaaaatcaccaaattccactattacagcttagttgagcactcataaatggttatggtgctatatagactaaaaacaatctccgtactcctaatctttttcttctttgaaaatgattagaagctaaaaaaacacaagtcgaatccagatctcaaaactcatatgagcagacaacagttcttaaagttgaattttatggtaaatttttatagctcgaacaatacgaccacgcataatcaaactcagatctcaaaacaaaaagaaatctatgaatagaatgggcgaatcaagctataggagcaaaatcgccaccaaaaaaatagcatcacataaccaccacaaaagactcataaccactggagcgaaatcagccgtattgttcaacatctgaaactttcattagtagtgttataactcaccaaaacacttaatcattaacgcaggttcaatggacaaaatggacggagatgcagatgaaacgcaatcgcaagggccgccgagatttgtgtcgatttctcagagagtcagagtaaaaggagaacaaaaggagacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130245" stop="131559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130545" g_stop="131259" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E543766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130545" e_stop="131259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCAAAATTAATTTCTCAAATTATAAAGTGAGACATAGCTATTATCCTATTGAATCACTTTTCTTCTCCCTTTAATTTCAATTTCAATTGATAATTTGGGCAGGCCAAGCATACAAAAATTAGAATTTTTTTCATTGATTTAAAATGCTTAAGCAAAGCAAAATCACCAAATTCCACTATTACAGCTTAGTTGAGCACTCATAAATGGTTATGGTGCTATATAGACTAAAAACAATCTCCGTACTCCTAATCTTTTTCTTCTTTGAAAATGATTAGAAGCTAAAAAAACACAAGTCGAATCCAGATCTCAAAACTCATATGAGCAGACAACAGTTCTTAAAGTTGAATTTTATGGTAAATTTTTATAGCTCGAACAATACGACCACGCATAATCAAACTCAGATCTCAAAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCATTAGTAGTGTTATAACTCACCAAAACACTTAATCATTAACGCAGGTTCAATGGACAAAATGGACGGAGATGCAGATGAAACGCAATCGCAAGGGCCGCCGAGATTTGTGTCGATTTCTCAGAGAGTCAGAGTAAAAGGAGAACAAAAGGAGACGT</genome_strand>
        <mrna_strand>AAAACTCCAAAATTAATTTCTCAAATTATAAAGTGAGACATAGCTATTATCCTATTGAATCACTTTTCTTCTCCCTTTAATTTCAATTTCAATTGATAATTTGGGCAGGCCAAGCATACAAAAATTAGAATTTTTTTCATTGATTTAAAATGCTTAAGCAAAGCAAAATCACCAAATTCCACTATTACAGCTTAGTTGAGCACTCATAAATGGTTATGGTGCTATATAGACTAAAAACAATCTCCGTACTCCTAATCTTTTTCTTCTTTGAAAATGATTAGAAGCTAAAAAAACACAAGTCGAATCCAGATCTCAAAACTCATATGAGCAGACAACAGTTCTTAAAGTTGAATTTTATGGTAAATTTTTATAGCTCGAACAATACGACCACGCATAATCAAACTCAGATCTCAAAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCATTAGTAGTGTTATAACTCACCAAAACACTTAATCATTAACGCAGGTTCAATGGACAAAATGGACGGAGATGCAGATGAAACGCAATCGCAAGGGCCGCCGAGATTTGTGTCGATTTCTCAGAGAGTCAGAGTAAAAGGAGAACAAAAGGAGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306351" ref_strand="+" ref_description="SGN-E306351 [cLEX-13-D3]">
      <seq>aaactccaaaattaatttctcaaattataaagtgagacatagctattatcctattgaatcacttttcttctccctttaatttcaatttcaattgataatttgggcaggccaagcatacaaaaattagaatttttttcattgatttaaaatgcttaagcaaagcaaaatcaccaaattccactattacagcttagttgagcactcataaatggttatggtgctatatagactaaaaacaatctccgtactcctaatctttttcttctttgaaaatgattagaagctaaaaaaacacaagtcgaatccagatctcaaaactcatatgagccagacaacagttcttaaagttgaattttatggtaaatttttatagctcgaacaatacgaccacgcataatcaaactcagatctcaaaacaaaaagaaatctatgaatagaatgggcgaatcaagctataggagcaaaatcgccaccaaaaaaatagcatcacataacccccacaaaagactcataaccactggagcgaaatcagccgtattgttcaacatctgaaactttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130246" stop="131405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130546" g_stop="131105" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E306351" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130546" e_stop="131105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCCAAAATTAATTTCTCAAATTATAAAGTGAGACATAGCTATTATCCTATTGAATCACTTTTCTTCTCCCTTTAATTTCAATTTCAATTGATAATTTGGGCAGGCCAAGCATACAAAAATTAGAATTTTTTTCATTGATTTAAAATGCTTAAGCAAAGCAAAATCACCAAATTCCACTATTACAGCTTAGTTGAGCACTCATAAATGGTTATGGTGCTATATAGACTAAAAACAATCTCCGTACTCCTAATCTTTTTCTTCTTTGAAAATGATTAGAAGCTAAAAAAACACAAGTCGAATCCAGATCTCAAAACTCATATGAG-CAGACAACAGTTCTTAAAGTTGAATTTTATGGTAAATTTTTATAGCTCGAACAATACGACCACGCATAATCAAACTCAGATCTCAAAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCAT</genome_strand>
        <mrna_strand>AAACTCCAAAATTAATTTCTCAAATTATAAAGTGAGACATAGCTATTATCCTATTGAATCACTTTTCTTCTCCCTTTAATTTCAATTTCAATTGATAATTTGGGCAGGCCAAGCATACAAAAATTAGAATTTTTTTCATTGATTTAAAATGCTTAAGCAAAGCAAAATCACCAAATTCCACTATTACAGCTTAGTTGAGCACTCATAAATGGTTATGGTGCTATATAGACTAAAAACAATCTCCGTACTCCTAATCTTTTTCTTCTTTGAAAATGATTAGAAGCTAAAAAAACACAAGTCGAATCCAGATCTCAAAACTCATATGAGCCAGACAACAGTTCTTAAAGTTGAATTTTATGGTAAATTTTTATAGCTCGAACAATACGACCACGCATAATCAAACTCAGATCTCAAAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCCCCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543765" ref_strand="+" ref_description="SGN-E543765 [TUS-65-M1](-)">
      <seq>aaacaaaaagaaatctatgaatagaatgggcgaatcaagctataggagcaaaatcgccaccaaaaaaatagcatcacataaccaccacaaaagactcataaccactggagcgaaatcagccgtattgttcaacatctgaaactttcattagtagtgttataactcaccaaaacacttaatcattaacgcaggttcaatggacaaaatggacggagatgcagatgaaacgcaatcgcaagggccgccgagatttgtgtcgatttctcagagagtcagagtaaaaggagaacaaaaggagacgtcggagcaagggagaagaaaaaggggggggtggggttgggatccttaatctattttttcctttttttctttttattattaattttttttaaagaaaattaattgctatcactcgcctttttaagtgtgataccatgcgctataaatgagtcagcaaaataaatgtcacataaacttaatcaacgatcaaagggtttaaaaatctcattttgattgagttgaagggttcagttgacaaaagattaagtagaagggtttacaatataaattcatacaattataagggtctattagaccatttcgcctatttattttaaataggttaaaaaatggttacaaataaatgaaaataagggaggtagatgtaattttgtaaaccataggggaggtgagtgttatagagcgaaacttggagcgaggtctctgaaattatcctttttgtaagtatattcaatattattctgaaatatcaatgacattactacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130658" stop="132049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130958" g_stop="131755" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E543765" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130958" e_stop="131755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCATTAGTAGTGTTATAACTCACCAAAACACTTAATCATTAACGCAGGTTCAATGGACAAAATGGACGGAGATGCAGATGAAACGCAATCGCAAGGGCCGCCGAGATTTGTGTCGATTTCTCAGAGAGTCAGAGTAAAAGGAGAACAAAAGGAGACGTCGGAGCAAGGGAGAAGAAAAAGGGGGGGGTGGGGTTGGGATCCTTAATCTATTTTTTCCTTTTTTTCTTTTTATTATTAATTTTTTTTAAAGAAAATTAATTGCTATCACTCGCCTTTTTAAGTGTGATACCATGCGCTATAAATGAGTCAGCAAAATAAATGTCACATAAACTTAATCAACGATCAAAGGGTTTAAAAATCTCATTTTGATTGAGTTGAAGGGTTCAGTTGACAAAAGATTAAGTAGAAGGGTTTACAATATAAATTCATACAATTATAAGGGTCTATTAGACCATTTCGCCTATTTATTTTAAATAGGTTAAAAAATGGTTACAAATAAATGAAAATAAGGGAGGTAGATGTAATTTTGTAAACCATAGGGGAGGTGAGTGTTATAGAGCGAAACTTGGAGCGAGGTCTCTGAAATTATCCTTTTTGTAAGTATATTCAATATTATTCTGAAATATCAATGACATTACTACATACGAAGGAGGA</genome_strand>
        <mrna_strand>AAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCATTAGTAGTGTTATAACTCACCAAAACACTTAATCATTAACGCAGGTTCAATGGACAAAATGGACGGAGATGCAGATGAAACGCAATCGCAAGGGCCGCCGAGATTTGTGTCGATTTCTCAGAGAGTCAGAGTAAAAGGAGAACAAAAGGAGACGTCGGAGCAAGGGAGAAGAAAAAGGGGGGGGTGGGGTTGGGATCCTTAATCTATTTTTTCCTTTTTTTCTTTTTATTATTAATTTTTTTTAAAGAAAATTAATTGCTATCACTCGCCTTTTTAAGTGTGATACCATGCGCTATAAATGAGTCAGCAAAATAAATGTCACATAAACTTAATCAACGATCAAAGGGTTTAAAAATCTCATTTTGATTGAGTTGAAGGGTTCAGTTGACAAAAGATTAAGTAGAAGGGTTTACAATATAAATTCATACAATTATAAGGGTCTATTAGACCATTTCGCCTATTTATTTTAAATAGGTTAAAAAATGGTTACAAATAAATGAAAATAAGGGAGGTAGATGTAATTTTGTAAACCATAGGGGAGGTGAGTGTTATAGAGCGAAACTTGGAGCGAGGTCTCTGAAATTATCCTTTTTGTAAGTATATTCAATATTATTCTGAAATATCAATGACATTACTACATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398572" ref_strand="-" ref_description="SGN-E398572 [TUS-34-O6](-)">
      <seq>ttttttttttttttttttttttttttttttttttttaaaaaaaaagcaaaatctttattcatatcaactgcaattacattgagtttgaaaaggccatccccaaggtagtcttttcctacatacatatcatttttgcttactactactttatcaaaaacaaaaacccctttaaatccattcttggtcaaaattggaattgaaactaaattacttcccaaatcgggaacaaataaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="132218" stop="139969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137793" g_stop="137832" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.550"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137833" i_stop="139473" i_length="1641">
            <donor d_prob="0.989" d_score="0.55"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139474" g_stop="139669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="236" r_length="196" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E398572" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398572" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="137793" e_stop="137832"/>
          <exon e_start="139474" e_stop="139669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTTTATATTAGCAATGTCTTTGCTCATTATAAGCATGTCATCTAAATATAGACATTAAATGACTTCCTGATTTGAAGTATCTTTAATGTAAATACATTTATCACATTCATTGATCTTAAATCCATTTGACAACATGGTTTTATCAAATTTGCATGCCATCATTTTTGTGCTTGTTTTAGTCCATAAAGTGACTTAATAAGTTTGCACACTTTCTTTTCTTTACCAAGAACTACAAAACCCTCAGGTCGTTCTATGTAAATTTCTTCTTCCAGCTCTCCATTTAAGAAGGTTTTTTTCACATCCATTTGATGAATTTCAAGACCGTATACTGCAGCTAGTGCATTTAACATGCGAATTGATGTAATCGTAGTCACTGACGAGTATGTGTCAAAATAATCAAGACCTTCTTTATGTCTAAAATCTTTGACAACAATATTTGTCAATAGTTCCATCGTCTTTCATCTTCCTTTTAAAGATCCATTTTGAACCCAAAGACTTGTTCCCTGGAGGAAGATCAACCAACTCCCAAGTATGATTGCTTAGGATTGATTCAATTTCACTATGAACAGCCTCCTTCCAAGAGGTTGAGTCGCTAGACAACATTGCTTCCTTGAATGTTTGAGGCTCACTTTCAAGAAGAAATGTTACAAAATCTGATCCAAATAAAGTAGATGTCCTTTGACGTTTACTGCGCCTTGGACTTTCTTCATAATGTTCATTCTGTTTTGGTTCTTCTCTGGGTTGTTAAGATCCCCCACTAGATGACTCAAGTCTAGTTTTATACGGATAGATATGTTCAAAAAATTCAGCACTATCTGATTCCATTACTGTATTATCATGAATATCTGGATGTTCGGACTTATGAACCAAAAATTGACATGCCTTACTGTTTGTGGCATATCCAATGAATACAGAATCCACAATCTTAGGCCCTATTTTTACCCTCTTAGGTATAGGAACTTGGAATTTGGCTAGACACCCCCACACATTGAAATATTTCAAGTTGGGTTTTCTTCCTTTCATTTCTCATATGGAATTACATTTGTCTTTGATTAAGGCACTCTGTTAAGTATATGATTTGTTGTAAGGAAAGCTTCCCCCCAAAAGTTTTGTGGTAAACCTGAACTTATAACTAATGCATTCATCATTTCTTTTAAAGTTCGGTTTTTCCTTTCTGCAATTTCATTAGATTGAGGAGTGTAGGGAGCAGTAGTTTGATGGATTATTCCATTTTCTAAACATATTTCTGCAAATGGAGATTCATATTCTCCACCTCTATCACTTCTGATCATTTTGATCTTTTATCTAACTGATTTTCCACTTCAGTTTTATATTGCTTAAATGCATCTATTGCTTCATCCTTACCATTTAGCAAATAGACAGAACAATATCTAGTGCAATCGTCAATAAAAGTTATGAAATACTTTTTCCCACCACGTGATGGTGTTGACTTCATGTCACAAATATCAGTGTGAATCAAGTCTAAAGGATTTGAATTCCTTTCAACAGATTTATAAGGATGCTTAGCATACTTAGATTCAACACAAATTTGACATTTTGATATATTGCACTCAAATTTTGGTAAAATATTAAGCTAATCAGTTTTCGCAAGGTTTTGTTATTAATGTATCCCAAACGTTCATGCCATAAATATTTATACTCAAGCAAGTAAGAAGAAGCAAAATCTTTATTCATATCAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGCCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAAAAACAAATACACATTTAAATCCATTCTTGGTAAGAACTGGAATTGAAACTAAATTCTTTCTCAATTCTGGAACATATGAGAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGCAAAATCTTTATTCATATCAACTGCAATTACATTGAGTTTGAAAAGGCCATCCCCAAGGTAGTCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAAAAACAAAAACCCCTTTAAATCCATTCTTGGTCAAAATTGGAATTGAAACTAAATTACTTCCCAAATCGGGAACAAATAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="140272" stop="132218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139972" g_stop="139450" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139972" e_stop="139450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGTAAACTTGGTTGAATCCAAAGGAGAAATGGTCGATCT-TGTGCAACGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATAACATGTTTGTGCCAAAAAAGAATTATTTTCATCATATACTCCAACACTTACAGATGAGAAGTTGTTTATGGCAAACTCGACTGTTGCAAAGGTGGAAGGAACTGACAAAGTCTTATTATATATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTACTTGCTTGAGTATAAATATT</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="140477" stop="139170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140177" g_stop="139470" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140177" e_stop="139470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTAGTATTTCAGCAATATCTAGAGCAAATTTTGTTGAAGAAGATCTCACACAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGAAAAATGCTTCAACTGTGGTAAACATGGTCATAAGGCTACTGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGTAAACTTGGTTGAATCCAAAGGAGAAATGGTCGATCT-TGTGCAACGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATAACATGTTTGTGCCAAAAAAGAATTATTTTCATCATATACTCCAACACTTACAGATGAGAAGTTGTTTATGGCAAACTCGACTGTTGCAAAGGTGGAAGGAACTGACAAAGTCTTATTATATATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="140328" stop="139170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140028" g_stop="139470" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="140028" e_stop="139470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGAAAAATGCTTCAACTGTGGTAAACATGGTCATAAGGCTACTGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGTAAACTTGGTTGAATCCAAAGGAGAAATGGTCGATCT-TGTGCAACGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATAACATGTTTGTGCCAAAAAAGAATTATTTTCATCATATACTCCAACACTTACAGATGAGAAGTTGTTTATGGCAAACTCGACTGTTGCAAAGGTGGAAGGAACTGACAAAGTCTTATTATATATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="140304" stop="139170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140004" g_stop="139470" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="556"/>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="140004" e_stop="139470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTGGTAAACATGGTCATAAGGCTACTGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGTAAACTTGGTTGAATCCAAAGGAGAAATGGTCGATCT-TGTGCAACGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATAACATGTTTGTGCCAAAAAAGAATTATTTTCATCATATACTCCAACACTTACAGATGAGAAGTTGTTTATGGCAAACTCGACTGTTGCAAAGGTGGAAGGAACTGACAAAGTCTTATTATATATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGCTTCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="141167" stop="139889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140867" g_stop="140373" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140372" i_stop="140301" i_length="72">
            <donor d_prob="0.968" d_score="0.88"/>
            <acceptor a_prob="0.756" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140300" g_stop="140189" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140867" e_stop="140373"/>
          <exon e_start="140300" e_stop="140189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTAGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGGTCAAATACTGTCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTATAAGAGATGACAGCAAAAGATGTTCTTCTATCTCATTACGTTCATTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGCGTGATGAACGATTCTTGGTAACAGAATCATGGACACGCTCAAATTTTTAGTGTAAAAATCATATTCTGAGTGATCGGCAAAATGATCTGTACAATGTGTACAACAATGTCAAAACCTCAACAGAACTCT-GGATGCTTTAGAAAAAAAGTACAAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAA-ATTATACACAATAAGACCGTCGTCAACCAAGTTCAATAATTGTAGGTCATAATCCATGATCTCCTTCTTGAAGGTATAAATTTATTTAATGTATATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAATCTTTAATGTAGGATTGATTGTGAATGATGTCTTTTAAGTGGCTACAATTATTGAAAAGTTACCTCTTTTGTGGAAGGACTTCAAAAACTACTTGAAACACAAACGCAAGGAGATAACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="141345" stop="139904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141045" g_stop="140373" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140372" i_stop="140301" i_length="72">
            <donor d_prob="0.968" d_score="0.88"/>
            <acceptor a_prob="0.756" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140300" g_stop="140204" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141045" e_stop="140373"/>
          <exon e_start="140300" e_stop="140204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGAGTAAAAGAACATAAAAACATTATCGTTAAATCAGAAATAGTTTGTGTAAAGATTTGATCTTTACTGTTAGTA-TTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTAGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGGTCAAATACTGTCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTATAAGAGATGACAGCAAAAGATGTTCTTCTATCTCATTACGTTCATTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGCGTGATGAACGATTCTTGGTAACAGAATCATGGACACGCTCAAATTTTTAGTGTAAAAATCATATTCTGAGTGATCGGCAAAATGATCTGTACAATGTGTACAACAATGTCAAAACCTCAACAGAACTCT-GGATGCTTTAGAAAAAAAGTACAAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAA-ATTATACACAATAAGACCGTCGTCAACCAAGTTCAATAATTGTAGGTCATAATCCATGATCTCCTTCTTGAAGGTATAAATTTATTTAATGTATATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAATCTTTAATGTAGGATTGATTGTGAATGATGTCTTTTAAGTGGCTACAATTATTGAAAAGTTACCT-CTTTTGTGGAAGGACTTCAAAAACTACTTGAAACACAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="141369" stop="140337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141079" g_stop="140637" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141079" e_stop="140637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAATCTGTATTTGAGGTTTCAGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGAGTAAAAGAACATAAAAACATTATCGTTAAATCAGAAATAGTTTGTGTAAAGATTTGATCTTTACTGTTAGTA-TTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTAGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGGTCAAATACTGTCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTATAAGAGATGACAGCAAAAGATGTTCTTCTATCTCATTACGTTCATTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGCGTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="145477" stop="144547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145177" g_stop="144847" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145177" e_stop="144847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATCTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCACCCATTTCTAAGATAACCAAGTCTACATAATTATTACTCCCCACAAAAGTCACCAGACAAGACCTATATACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGAATGTTAAGCAATTCACAAGGTAAATTAAGACCAGTATCAAATGAGGAATATACATATGAAAATATGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="+" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="144577" stop="145837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144877" g_stop="145537" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144877" e_stop="145537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGCTCCATATTTTCATATGTATATTCCTCATTTGATACTGGTCTTAATTTACCTTGTGAATTGCTTAACATTCCTATTCGTGTGTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAGGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGTAATAATTATGTAGACTTGGTTATCTTAGAAATGGGTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCAGATTTTGTAATCTTAGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACATTACCCAAGTACCTTCAATTGAGTCGGTTTTGGTAGTCCGTGAGTTCCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTGGAACCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCTCGCTGAGTTAATGGAATTAAAGGCTCAACTTCAAGAATTGTTAGGAAAAGGCTTCAATAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTGT-TCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="147284" stop="146098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146984" g_stop="146398" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146984" e_stop="146398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGGTTGTTGCTTCTTTAGCCTCTCCTCGCAACACTTTATCTCGGATCCGGATCAATTTCTCATCAGTAAAGTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAAATCATTAGCCAGAGTATGAAACTCTCTAGCCAATGGGCGTCTAGAAACTTGCAAGTGATCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCCTTCTGAGTAAAGACATATTGTAGGCTACGATGGTCCGTATAGACTTCACACTTAACCCCATATAGATAGTGCCTCCATTGCTTTAATGCAAACACTACCGCGGCCAACTCCAAATCATGGGTCGGATAGTTACATTCATGCACTTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="147284" stop="146098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146984" g_stop="146398" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146984" e_stop="146398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGGTTGTTGCTTCTTTAGCCTCTCCTCGCAACACTTTATCTCGGATCCGGATCAATTTCTCATCAGTAAAGTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAAATCATTAGCCAGAGTATGAAACTCTCTAGCCAATGGGCGTCTAGAAACTTGCAAGTGATCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCCTTCTGAGTAAAGACATATTGTAGGCTACGATGGTCCGTATAGACTTCACACTTAACCCCATATAGATAGTGCCTCCATTGCTTTAATGCAAACACTACCGCGGCCAACTCCAAATCATGGGTCGGATAGTTACATTCATGCACTTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="147284" stop="146131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146984" g_stop="146431" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146984" e_stop="146431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGGTTGTTGCTTCTTTAGCCTCTCCTCGCAACACTTTATCTCGGATCCGGATCAATTTCTCATCAGTAAAGTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAAATCATTAGCCAGAGTATGAAACTCTCTAGCCAATGGGCGTCTAGAAACTTGCAAGTGATCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCCTTCTGAGTAAAGACATATTGTAGGCTACGATGGTCCGTATAGACTTCACACTTAACCCCATATAGATAGTGCCTCCATTGCTTTAATGCAAACACTACCGCGGCCAACTCCAAATCATGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0004C15-gV6FC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0004C15.1" temp_strand="-" temp_description="C03HBa0004C15.1  AC238436.1 htgs_phase:2 submitted_to_sgn_as:gi|260903609|gb|AC238436.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0004c15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="147728" stop="146588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147428" g_stop="146888" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0004C15.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0004C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147428" e_stop="146888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATACAATGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAACTTCCGAGATGCAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAAACTATCAACAGTTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCGATTCTCT-CCACTTCCATTCCAGAATGGGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACGATTTGGACATTTCGCGAAAAACTCCACAATGTCATGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTAATCCTCAAAACACCTTCCTCATCGGTTGTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2056" PGL_stop="2341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2056" e_stop="2341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="2056" e_stop="2341" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2056" stop="2341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCCTTCTTTCGTGCTATTACTTAGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCTCAGATGGTTAGGACTAGAGCAACGACTGCGCCAACACCAACACCGGCAAGGCAAGATGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  P  T  P  A  R  Q  D  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  P  S  F  V  L  L  L  R  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  L  R  W  L  G  L  E  Q  R  L  R  Q  H  Q  H  R  Q  G  K  M  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  L  L  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  S  D  G  *  D  *  S  N  D  C  A  N  T  N  T  G  K  A  R  C  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2105" stop="2341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFPSFVLLLRSNWYLGDTNWYLTIFTLFLRWLGLEQRLRQHQHRQGKMRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16986" PGL_stop="17232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16986" e_stop="17232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="16986" e_stop="17232" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16986" stop="17232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16987" stop="17232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16987" stop="17232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16987" stop="17193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAGAAAATAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTTAGAAGGGTTTCCAC</gDNA_template>
            <first_frame> E  K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  Y  C  I  R  D  Y  T  M  *  N  F  L  L  *  *  Y  Q  L  L  L  L  A  R  G  F  F  P  Y  L  E  G  F  P  </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  R  Y  S  I  D  Y  T  R  K  *  F  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  I  V  F  V  T  T  Q  C  K  I  S  Y  Y  N  N  I  N  C  S  S  W  P  V  V  F  S  L  I  *  K  G  F  H </second_frame>
            <third_frame>   K  T  I  L  R  A  K  *  G  I  P  *  T  I  Q  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  H  N  V  K  F  L  T  I  I  I  S  I  A  P  L  G  P  W  F  F  P  L  F  R  R  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0004C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23771" PGL_stop="24426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23771" e_stop="24426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="23771" e_stop="24426" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23771" stop="24426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAACTAGGTTCTTGCTTTTCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCCGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGAGTGACTACAGGGCCTATAATGACGAGTTATCAGCATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTAGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTAGAACGATTTGCCATTGAGTTTGTGACCTATCAGTTTCAGGGGAACGCCAAAATGTGGTGGCGGTCATATGTTGAGTGTCAACCAACACAGGTACCACCTATCACTTGGGCATCATTCTCTAGATTATTTATGGAGAAGTATATACCCCAGACTTTGAGAGATAGTAGGAGAGATGAGTTCCTGAGCCTAGAGCAGGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTTCGTCCACAAGAGCGGATTGTCCGTTTTGTGAAGGGATTGAGGTCAGACTTGCAGATTCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  T  R  F  L  L  F  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  P  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  E  *  L  Q  G  L  *  *  R  V  I  S  M  N  F  S  L  N  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  *  L  I  V  M  S  C  Y  I  R  W  A  *  *  N  D  L  P  L  S  L  *  P  I  S  F  R  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  H  R  Y  H  L  S  L  G  H  H  S  L  D  Y  L  W  R  S  I  Y  P  R  L  *  E  I  V  G  E  M  S  S  *  A  *  S  R  A  G  C  R  L  L  L  M  R  L  S  F  V  H  Y  P  G  M  P  P  S  F  A  F  V  H  K  S  G  L  S  V  L  *  R  D  *  G  Q  T  C  R  F  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  *  L  G  S  C  F  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  Y  T  S  T  S  G  S  G  S  T  T  C  S  R  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  E  L  S  A  *  T  F  H  *  I  L  E  V  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  S  *  L  S  *  V  A  T  *  D  G  H  S  R  T  I  C  H  *  V  C  D  L  S  V  S  G  E  R  Q  N  V  V  A  V  I  C  *  V  S  T  N  T  G  T  T  Y  H  L  G  I  I  L  *  I  I  Y  G  E  V  Y  T  P  D  F  E  R  *  *  E  R  *  V  P  E  P  R  A  G  Q  D  V  G  Y  C  L  *  G  *  V  S  C  T  I  Q  V  C  H  P  A  L  L  S  S  T  R  A  D  C  P  F  C  E  G  I  E  V  R  L  A  D  S  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  *  V  L  A  F  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  T  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  V  T  T  G  P  I  M  T  S  Y  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  A  I  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  T  Q  V  P  P  I  T  W  A  S  F  S  R  L  F  M  E  K  Y  I  P  Q  T  L  R  D  S  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  R  P  Q  E  R  I  V  R  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23785" stop="24426"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAFLSGLSDQGQTPPVFSTPAPQVPGVQHAAAVAPRMDASLEIGTFPRVTTGPIMTSYQHELFTKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFAIEFVTYQFQGNAKMWWRSYVECQPTQVPPITWASFSRLFMEKYIPQTLRDSRRDEFLSLEQGRMSVTAYEAKFRALSRYATQLCFRPQERIVRFVKGLRSDLQIPALQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="130545" PGL_stop="131755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130545" e_stop="131755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="130545" e_stop="131755" e_length="1211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130545" stop="131259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130546" stop="131105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130958" stop="131755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTCCAAAATTAATTTCTCAAATTATAAAGTGAGACATAGCTATTATCCTATTGAATCACTTTTCTTCTCCCTTTAATTTCAATTTCAATTGATAATTTGGGCAGGCCAAGCATACAAAAATTAGAATTTTTTTCATTGATTTAAAATGCTTAAGCAAAGCAAAATCACCAAATTCCACTATTACAGCTTAGTTGAGCACTCATAAATGGTTATGGTGCTATATAGACTAAAAACAATCTCCGTACTCCTAATCTTTTTCTTCTTTGAAAATGATTAGAAGCTAAAAAAACACAAGTCGAATCCAGATCTCAAAACTCATATGAGCAGACAACAGTTCTTAAAGTTGAATTTTATGGTAAATTTTTATAGCTCGAACAATACGACCACGCATAATCAAACTCAGATCTCAAAACAAAAAGAAATCTATGAATAGAATGGGCGAATCAAGCTATAGGAGCAAAATCGCCACCAAAAAAATAGCATCACATAACCACCACAAAAGACTCATAACCACTGGAGCGAAATCAGCCGTATTGTTCAACATCTGAAACTTTCATTAGTAGTGTTATAACTCACCAAAACACTTAATCATTAACGCAGGTTCAATGGACAAAATGGACGGAGATGCAGATGAAACGCAATCGCAAGGGCCGCCGAGATTTGTGTCGATTTCTCAGAGAGTCAGAGTAAAAGGAGAACAAAAGGAGACGTCGGAGCAAGGGAGAAGAAAAAGGGGGGGGTGGGGTTGGGATCCTTAATCTATTTTTTCCTTTTTTTCTTTTTATTATTAATTTTTTTTAAAGAAAATTAATTGCTATCACTCGCCTTTTTAAGTGTGATACCATGCGCTATAAATGAGTCAGCAAAATAAATGTCACATAAACTTAATCAACGATCAAAGGGTTTAAAAATCTCATTTTGATTGAGTTGAAGGGTTCAGTTGACAAAAGATTAAGTAGAAGGGTTTACAATATAAATTCATACAATTATAAGGGTCTATTAGACCATTTCGCCTATTTATTTTAAATAGGTTAAAAAATGGTTACAAATAAATGAAAATAAGGGAGGTAGATGTAATTTTGTAAACCATAGGGGAGGTGAGTGTTATAGAGCGAAACTTGGAGCGAGGTCTCTGAAATTATCCTTTTTGTAAGTATATTCAATATTATTCTGAAATATCAATGACATTACTACATACGAAGGAGGA</gDNA_template>
            <first_frame> K  T  P  K  L  I  S  Q  I  I  K  *  D  I  A  I  I  L  L  N  H  F  S  S  P  F  N  F  N  F  N  *  *  F  G  Q  A  K  H  T  K  I  R  I  F  F  I  D  L  K  C  L  S  K  A  K  S  P  N  S  T  I  T  A  *  L  S  T  H  K  W  L  W  C  Y  I  D  *  K  Q  S  P  Y  S  *  S  F  S  S  L  K  M  I  R  S  *  K  N  T  S  R  I  Q  I  S  K  L  I  *  A  D  N  S  S  *  S  *  I  L  W  *  I  F  I  A  R  T  I  R  P  R  I  I  K  L  R  S  Q  N  K  K  K  S  M  N  R  M  G  E  S  S  Y  R  S  K  I  A  T  K  K  I  A  S  H  N  H  H  K  R  L  I  T  T  G  A  K  S  A  V  L  F  N  I  *  N  F  H  *  *  C  Y  N  S  P  K  H  L  I  I  N  A  G  S  M  D  K  M  D  G  D  A  D  E  T  Q  S  Q  G  P  P  R  F  V  S  I  S  Q  R  V  R  V  K  G  E  Q  K  E  T  S  E  Q  G  R  R  K  R  G  G  W  G  W  D  P  *  S  I  F  S  F  F  S  F  Y  Y  *  F  F  L  K  K  I  N  C  Y  H  S  P  F  *  V  *  Y  H  A  L  *  M  S  Q  Q  N  K  C  H  I  N  L  I  N  D  Q  R  V  *  K  S  H  F  D  *  V  E  G  F  S  *  Q  K  I  K  *  K  G  L  Q  Y  K  F  I  Q  L  *  G  S  I  R  P  F  R  L  F  I  L  N  R  L  K  N  G  Y  K  *  M  K  I  R  E  V  D  V  I  L  *  T  I  G  E  V  S  V  I  E  R  N  L  E  R  G  L  *  N  Y  P  F  C  K  Y  I  Q  Y  Y  S  E  I  S  M  T  L  L  H  T  K  E   </first_frame>
            <second_frame>  K  L  Q  N  *  F  L  K  L  *  S  E  T  *  L  L  S  Y  *  I  T  F  L  L  P  L  I  S  I  S  I  D  N  L  G  R  P  S  I  Q  K  L  E  F  F  S  L  I  *  N  A  *  A  K  Q  N  H  Q  I  P  L  L  Q  L  S  *  A  L  I  N  G  Y  G  A  I  *  T  K  N  N  L  R  T  P  N  L  F  L  L  *  K  *  L  E  A  K  K  T  Q  V  E  S  R  S  Q  N  S  Y  E  Q  T  T  V  L  K  V  E  F  Y  G  K  F  L  *  L  E  Q  Y  D  H  A  *  S  N  S  D  L  K  T  K  R  N  L  *  I  E  W  A  N  Q  A  I  G  A  K  S  P  P  K  K  *  H  H  I  T  T  T  K  D  S  *  P  L  E  R  N  Q  P  Y  C  S  T  S  E  T  F  I  S  S  V  I  T  H  Q  N  T  *  S  L  T  Q  V  Q  W  T  K  W  T  E  M  Q  M  K  R  N  R  K  G  R  R  D  L  C  R  F  L  R  E  S  E  *  K  E  N  K  R  R  R  R  S  K  G  E  E  K  G  G  G  G  V  G  I  L  N  L  F  F  P  F  F  L  F  I  I  N  F  F  *  R  K  L  I  A  I  T  R  L  F  K  C  D  T  M  R  Y  K  *  V  S  K  I  N  V  T  *  T  *  S  T  I  K  G  F  K  N  L  I  L  I  E  L  K  G  S  V  D  K  R  L  S  R  R  V  Y  N  I  N  S  Y  N  Y  K  G  L  L  D  H  F  A  Y  L  F  *  I  G  *  K  M  V  T  N  K  *  K  *  G  R  *  M  *  F  C  K  P  *  G  R  *  V  L  *  S  E  T  W  S  E  V  S  E  I  I  L  F  V  S  I  F  N  I  I  L  K  Y  Q  *  H  Y  Y  I  R  R  R  </second_frame>
            <third_frame>   N  S  K  I  N  F  S  N  Y  K  V  R  H  S  Y  Y  P  I  E  S  L  F  F  S  L  *  F  Q  F  Q  L  I  I  W  A  G  Q  A  Y  K  N  *  N  F  F  H  *  F  K  M  L  K  Q  S  K  I  T  K  F  H  Y  Y  S  L  V  E  H  S  *  M  V  M  V  L  Y  R  L  K  T  I  S  V  L  L  I  F  F  F  F  E  N  D  *  K  L  K  K  H  K  S  N  P  D  L  K  T  H  M  S  R  Q  Q  F  L  K  L  N  F  M  V  N  F  Y  S  S  N  N  T  T  T  H  N  Q  T  Q  I  S  K  Q  K  E  I  Y  E  *  N  G  R  I  K  L  *  E  Q  N  R  H  Q  K  N  S  I  T  *  P  P  Q  K  T  H  N  H  W  S  E  I  S  R  I  V  Q  H  L  K  L  S  L  V  V  L  *  L  T  K  T  L  N  H  *  R  R  F  N  G  Q  N  G  R  R  C  R  *  N  A  I  A  R  A  A  E  I  C  V  D  F  S  E  S  Q  S  K  R  R  T  K  G  D  V  G  A  R  E  K  K  K  G  G  V  G  L  G  S  L  I  Y  F  F  L  F  F  F  L  L  L  I  F  F  K  E  N  *  L  L  S  L  A  F  L  S  V  I  P  C  A  I  N  E  S  A  K  *  M  S  H  K  L  N  Q  R  S  K  G  L  K  I  S  F  *  L  S  *  R  V  Q  L  T  K  D  *  V  E  G  F  T  I  *  I  H  T  I  I  R  V  Y  *  T  I  S  P  I  Y  F  K  *  V  K  K  W  L  Q  I  N  E  N  K  G  G  R  C  N  F  V  N  H  R  G  G  E  C  Y  R  A  K  L  G  A  R  S  L  K  L  S  F  L  *  V  Y  S  I  L  F  *  N  I  N  D  I  T  T  Y  E  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131112" stop="131306"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYNSPKHLIINAGSMDKMDGDADETQSQGPPRFVSISQRVRVKGEQKETSEQGRRKRGGWGWDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="137793" PGL_stop="139669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137793" e_stop="137832"/>
            <exon e_start="139474" e_stop="139669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.550">
            <gDNA_exon_boundary e_start="137793" e_stop="137832" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="137833" i_stop="139473" i_length="1641"/>
          </intron>
          <exon e_serial="2" e_score="0.908">
            <gDNA_exon_boundary e_start="139474" e_stop="139669" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137793" stop="137832"/>
              <exon start="139474" stop="139669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398572" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTAGCTTTTATATTAGCAATGTCTTTGCTCATTATAA : AAGAAGCAAAATCTTTATTCATATCAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGCCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAAAAACAAATACACATTTAAATCCATTCTTGGTAAGAACTGGAATTGAAACTAAATTCTTTCTCAATTCTGGAACATATGAGAC</gDNA_template>
            <first_frame> F  V  A  F  I  L  A  M  S  L  L  I  I   : K  E  A  K  S  L  F  I  S  T  A  I  T  L  S  L  K  R  P  S  L  R  *  P  F  P  T  Y  I  S  F  L  L  T  T  T  L  S  K  T  N  T  H  L  N  P  F  L  V  R  T  G  I  E  T  K  F  F  L  N  S  G  T  Y  E   </first_frame>
            <second_frame>  L  *  L  L  Y  *  Q  C  L  C  S  L  *  :  K  K  Q  N  L  Y  S  Y  Q  L  Q  L  H  *  V  *  K  G  H  H  *  G  S  L  F  L  H  T  Y  H  F  C  L  L  L  L  Y  Q  K  Q  I  H  I  *  I  H  S  W  *  E  L  E  L  K  L  N  S  F  S  I  L  E  H  M  R  </second_frame>
            <third_frame>   C  S  F  Y  I  S  N  V  F  A  H  Y  K :   R  S  K  I  F  I  H  I  N  C  N  Y  I  E  F  E  K  A  I  T  K  V  A  F  S  Y  I  H  I  I  F  A  Y  Y  Y  F  I  K  N  K  Y  T  F  K  S  I  L  G  K  N  W  N  *  N  *  I  L  S  Q  F  W  N  I  *  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137795" stop="137832"/>
                    <exon start="139474" stop="139633"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSFYISNVFAHYKRSKIFIHINCNYIEFEKAITKVAFSYIHIIFAYYYFIKNKYTFKSILGKNWN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="140177" PGL_stop="139450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140177" e_stop="139450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="140177" e_stop="139450" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140177" stop="139470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140028" stop="139470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140004" stop="139470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139972" stop="139450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTAGTATTTCAGCAATATCTAGAGCAAATTTTGTTGAAGAAGATCTCACACAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGAAAAATGCTTCAACTGTGGTAAACATGGTCATAAGGCTACTGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGTAAACTTGGTTGAATCCAAAGGAGAAATGGTCGATCTTGTGCAACGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATAACATGTTTGTGCCAAAAAAGAATTATTTTCATCATATACTCCAACACTTACAGATGAGAAGTTGTTTATGGCAAACTCGACTGTTGCAAAGGTGGAAGGAACTGACAAAGTCTTATTATATATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTACTTGCTTGAGTATAAATATT</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  F  Q  Q  Y  L  E  Q  I  L  L  K  K  I  S  H  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  K  N  A  S  T  V  V  N  M  V  I  R  L  L  N  A  G  V  L  R  R  T  R  K  R  R  I  K  *  T  W  L  N  P  K  E  K  W  S  I  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  I  T  C  L  C  Q  K  R  I  I  F  I  I  Y  S  N  T  Y  R  *  E  V  V  Y  G  K  L  D  C  C  K  G  G  R  N  *  Q  S  L  I  I  Y  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  Y  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  F  F  L  L  A  *  V  *  I   </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  *  Y  F  S  N  I  *  S  K  F  C  *  R  R  S  H  T  I  K  E  K  K  E  N  I  W  S  K  K  Q  S  S  *  E  E  I  Q  *  K  M  L  Q  L  W  *  T  W  S  *  G  Y  *  M  P  G  S  *  E  G  Q  E  K  E  G  S  S  K  L  G  *  I  Q  R  R  N  G  R  S  C  A  T  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  F  G  A  S  *  H  V  C  A  K  K  E  L  F  S  S  Y  T  P  T  L  T  D  E  K  L  F  M  A  N  S  T  V  A  K  V  E  G  T  D  K  V  L  L  Y  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  K  C  V  F  V  F  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S  Y  L  L  E  Y  K  Y  </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  S  I  S  A  I  S  R  A  N  F  V  E  E  D  L  T  Q  L  K  K  R  K  K  T  S  G  P  K  S  N  P  P  K  K  K  F  N  E  K  C  F  N  C  G  K  H  G  H  K  A  T  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  V  N  L  V  E  S  K  G  E  M  V  D  L  V  Q  R  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  N  M  F  V  P  K  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  R  S  C  L  W  Q  T  R  L  L  Q  R  W  K  E  L  T  K  S  Y  Y  I  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  L  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  A  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L  L  T  C  L  S  I  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139822" stop="139451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVCAKKELFSSYTPTLTDEKLFMANSTVAKVEGTDKVLLYMTSGKVVTLNRVSYVPELRKNLVSIPVLTKNGFKCVFVFDKVVVSKNDMYVGKGYLSDGLFKLNVIAVDMNKDFASSYLLEYKY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140175" stop="139840"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRIEEDNKAAEKRSRSISAISRANFVEEDLTQLKKRKKTSGPKSNPPKKKFNEKCFNCGKHGHKATECRGPKKDKKKKDQVNLVESKGEMVDLVQRFQNVTWLEIQENGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="141079" PGL_stop="140189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141079" e_stop="140373"/>
            <exon e_start="140300" e_stop="140189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.756" e_score="0.905"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="141079" e_stop="140373" e_length="707"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.756">
            <gDNA_intron_boundary i_start="140372" i_stop="140301" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="140300" e_stop="140189" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141079" stop="140637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141045" stop="140373"/>
              <exon start="140300" stop="140204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140867" stop="140373"/>
              <exon start="140300" stop="140189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTATAATCTGTATTTGAGGTTTCAGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGAGTAAAAGAACATAAAAACATTATCGTTAAATCAGAAATAGTTTGTGTAAAGATTTGATCTTTACTGTTAGTATTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTAGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGGTCAAATACTGTCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTATAAGAGATGACAGCAAAAGATGTTCTTCTATCTCATTACGTTCATTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGCGTGATGAACGATTCTTGGTAACAGAATCATGGACACGCTCAAATTTTTAGTGTAAAAATCATATTCTGAGTGATCGGCAAAATGATCTGTACAATGTGTACAACAATGTCAAAACCTCAACAGAACTCTGGATGCTTTAGAAAAAAAGTACAAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAAATTATACACAATAAGACCGTCGTCAACCAAGTTCAATAATTGTAGGTCATAATCCATGATCTCCTTCTTGAAG : GATTGATTGTGAATGATGTCTTTTAAGTGGCTACAATTATTGAAAAGTTACCTCTTTTGTGGAAGGACTTCAAAAACTACTTGAAACACAAACGCAAGGAGATAACTGTTGA</gDNA_template>
            <first_frame> N  F  I  I  C  I  *  G  F  R  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  S  K  R  T  *  K  H  Y  R  *  I  R  N  S  L  C  K  D  L  I  F  T  V  S  I  Q  I  L  N  L  S  V  I  C  D  R  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  H  R  L  H  I  I  G  Q  I  L  S  *  R  R  L  R  N  L  Q  N  F  L  E  S  T  I  R  D  D  S  K  R  C  S  S  I  S  L  R  S  F  C  R  S  S  L  M  R  M  F  L  L  C  Q  M  K  L  R  V  M  N  D  S  W  *  Q  N  H  G  H  A  Q  I  F  S  V  K  I  I  F  *  V  I  G  K  M  I  C  T  M  C  T  T  M  S  K  P  Q  Q  N  S  G  C  F  R  K  K  V  Q  K  Q  K  M  S  E  *  R  N  S  L  W  Q  N  F  W  T  I  N  Y  T  Q  *  D  R  R  Q  P  S  S  I  I  V  G  H  N  P  *  S  P  S  *  R :   I  D  C  E  *  C  L  L  S  G  Y  N  Y  *  K  V  T  S  F  V  E  G  L  Q  K  L  L  E  T  Q  T  Q  G  D  N  C  * </first_frame>
            <second_frame>  I  L  *  S  V  F  E  V  S  G  D  *  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  V  K  E  H  K  N  I  I  V  K  S  E  I  V  C  V  K  I  *  S  L  L  L  V  F  K  Y  L  T  Y  L  S  F  V  T  E  K  K  D  *  F  K  S  N  K  C  *  N  N  K  C  C  N  N  I  G  C  T  *  S  V  K  Y  C  L  S  A  G  *  E  T  C  K  I  F  W  S  R  L  *  E  M  T  A  K  D  V  L  L  S  H  Y  V  H  S  A  E  V  H  *  *  E  C  S  C  Y  V  R  *  N  F  A  *  *  T  I  L  G  N  R  I  M  D  T  L  K  F  L  V  *  K  S  Y  S  E  *  S  A  K  *  S  V  Q  C  V  Q  Q  C  Q  N  L  N  R  T  L  D  A  L  E  K  K  Y  K  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  I  I  H  N  K  T  V  V  N  Q  V  Q  *  L  *  V  I  I  H  D  L  L  L  E   : G  L  I  V  N  D  V  F  *  V  A  T  I  I  E  K  L  P  L  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  I  T  V   </second_frame>
            <third_frame>   F  Y  N  L  Y  L  R  F  Q  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  E  *  K  N  I  K  T  L  S  L  N  Q  K  *  F  V  *  R  F  D  L  Y  C  *  Y  S  N  T  *  L  I  C  H  L  *  Q  K  K  K  T  N  S  S  Q  T  N  A  R  T  I  S  A  A  T  T  S  V  A  H  N  R  S  N  T  V  L  A  P  A  E  K  P  A  K  F  S  G  V  D  Y  K  R  *  Q  Q  K  M  F  F  Y  L  I  T  F  I  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  S  R  D  E  R  F  L  V  T  E  S  W  T  R  S  N  F  *  C  K  N  H  I  L  S  D  R  Q  N  D  L  Y  N  V  Y  N  N  V  K  T  S  T  E  L  W  M  L  *  K  K  S  T  K  T  E  D  V  G  M  K  K  F  I  V  A  K  F  L  D  Y  K  L  Y  T  I  R  P  S  S  T  K  F  N  N  C  R  S  *  S  M  I  S  F  L  K  :  D  *  L  *  M  M  S  F  K  W  L  Q  L  L  K  S  Y  L  F  C  G  R  T  S  K  T  T  *  N  T  N  A  R  R  *  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0004C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="145177" PGL_stop="144847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145177" e_stop="144847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="145177" e_stop="144847" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145177" stop="144847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATCTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCACCCATTTCTAAGATAACCAAGTCTACATAATTATTACTCCCCACAAAAGTCACCAGACAAGACCTATATACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGAATGTTAAGCAATTCACAAGGTAAATTAAGACCAGTATCAAATGAGGAATATACATATGAAAATATGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  S  L  H  N  Y  Y  S  P  Q  K  S  P  D  K  T  Y  I  P  F  Q  L  S  Q  T  H  P  P  E  *  T  H  E  *  E  C  *  A  I  H  K  V  N  *  D  Q  Y  Q  M  R  N  I  H  M  K  I  W  S  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  *  D  Y  K  I  W  R  K  P  S  H  T  Q  N  Y  I  K  I  T  H  F  *  D  N  Q  V  Y  I  I  I  T  P  H  K  S  H  Q  T  R  P  I  Y  P  F  N  Y  H  R  L  T  H  R  S  R  H  T  N  R  N  V  K  Q  F  T  R  *  I  K  T  S  I  K  *  G  I  Y  I  *  K  Y  G  A  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  T  K  S  G  E  S  Q  V  I  P  R  I  T  S  K  S  P  I  S  K  I  T  K  S  T  *  L  L  L  P  T  K  V  T  R  Q  D  L  Y  T  L  S  T  I  T  D  S  P  T  G  V  D  T  R  I  G  M  L  S  N  S  Q  G  K  L  R  P  V  S  N  E  E  Y  T  Y  E  N  M  E  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145046" stop="144849"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLPTKVTRQDLYTLSTITDSPTGVDTRIGMLSNSQGKLRPVSNEEYTYENMEPGSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="144877" PGL_stop="145537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144877" e_stop="145537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="144877" e_stop="145537" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144877" stop="145537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGCTCCATATTTTCATATGTATATTCCTCATTTGATACTGGTCTTAATTTACCTTGTGAATTGCTTAACATTCCTATTCGTGTGTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAGGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGTAATAATTATGTAGACTTGGTTATCTTAGAAATGGGTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCAGATTTTGTAATCTTAGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACATTACCCAAGTACCTTCAATTGAGTCGGTTTTGGTAGTCCGTGAGTTCCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTGGAACCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCTCGCTGAGTTAATGGAATTAAAGGCTCAACTTCAAGAATTGTTAGGAAAAGGCTTCAATAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  I  F  S  Y  V  Y  S  S  F  D  T  G  L  N  L  P  C  E  L  L  N  I  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  R  V  Y  R  S  C  L  V  T  F  V  G  S  N  N  Y  V  D  L  V  I  L  E  M  G  D  F  D  V  I  L  G  M  T  W  L  S  P  D  F  V  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  I  T  Q  V  P  S  I  E  S  V  L  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  L  A  E  L  M  E  L  K  A  Q  L  Q  E  L  L  G  K  G  F  N  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  A  P  Y  F  H  M  Y  I  P  H  L  I  L  V  L  I  Y  L  V  N  C  L  T  F  L  F  V  C  L  L  R  W  V  S  L  *  *  L  K  G  Y  I  G  L  V  W  *  L  L  W  G  V  I  I  M  *  T  W  L  S  *  K  W  V  I  L  M  *  F  W  V  *  L  G  F  L  Q  I  L  *  S  *  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  T  L  P  K  Y  L  Q  L  S  R  F  W  *  S  V  S  S  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  E  I  L  T  F  A  L  I  W  N  R  V  L  A  P  F  P  Y  P  L  I  E  W  L  S  L  S  *  W  N  *  R  L  N  F  K  N  C  *  E  K  A  S  I  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  S  W  L  H  I  F  I  C  I  F  L  I  *  Y  W  S  *  F  T  L  *  I  A  *  H  S  Y  S  C  V  Y  S  G  G  *  V  C  D  S  *  K  G  I  *  V  L  S  G  D  F  C  G  E  *  *  L  C  R  L  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  R  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  P  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  G  T  G  Y  S  P  H  F  H  T  P  L  *  N  G  S  R  *  V  N  G  I  K  G  S  T  S  R  I  V  R  K  R  L  Q  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144877" stop="145536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSIFSYVYSSFDTGLNLPCELLNIPIRVSTPVGESVIVERVYRSCLVTFVGSNNYVDLVILEMGDFDVILGMTWLSPDFVILDCNAKTVTLAKPGTDPLVWEGDYTSTPVRIISFLRAKRMVSKGCLAFLAHLRDDITQVPSIESVLVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMALAELMELKAQLQELLGKGFNRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="147428" PGL_stop="146398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147428" e_stop="146398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="147428" e_stop="146398" e_length="1031"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147428" stop="146888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146984" stop="146398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146984" stop="146398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146984" stop="146431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCATACAATGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAACTTCCGAGATGCAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAAACTATCAACAGTTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCACTTCCATTCCAGAATGGGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACGATTTGGACATTTCGCGAAAAACTCCACAATGTCATGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGGTTGTTGCTTCTTTAGCCTCTCCTCGCAACACTTTATCTCGGATCCGGATCAATTTCTCATCAGTAAAGTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAAATCATTAGCCAGAGTATGAAACTCTCTAGCCAATGGGCGTCTAGAAACTTGCAAGTGATCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCCTTCTGAGTAAAGACATATTGTAGGCTACGATGGTCCGTATAGACTTCACACTTAACCCCATATAGATAGTGCCTCCATTGCTTTAATGCAAACACTACCGCGGCCAACTCCAAATCATGGGTCGGATAGTTACATTCATGCACTTTTAATTGC</gDNA_template>
            <first_frame> S  A  Y  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  T  S  E  M  Q  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  K  L  S  T  V  T  Q  M  E  S  Y  L  P  I  V  L  G  R  P  T  T  K  S  I  A  I  L  S  T  S  I  P  E  W  A  F  S  E  V  F  L  Q  A  S  G  V  H  T  L  L  A  D  D  L  D  I  S  R  K  T  P  Q  C  H  A  S  F  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  S  S  K  H  L  P  H  R  L  L  L  L  *  P  L  L  A  T  L  Y  L  G  S  G  S  I  S  H  Q  *  S  A  F  P  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  T  S  *  N  H  *  P  E  Y  E  T  L  *  P  M  G  V  *  K  L  A  S  D  L  D  F  P  C  F  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  D  D  T  R  *  *  Y  R  S  P  S  V  V  P  S  I  S  S  V  S  S  S  N  P  S  E  *  R  H  I  V  G  Y  D  G  P  Y  R  L  H  T  *  P  H  I  D  S  A  S  I  A  L  M  Q  T  L  P  R  P  T  P  N  H  G  S  D  S  Y  I  H  A  L  L  I   </first_frame>
            <second_frame>  Q  H  T  M  F  S  K  T  *  K  *  I  A  Y  L  Y  L  I  *  W  R  V  E  P  H  A  I  E  Q  L  P  R  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  L  N  Y  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  W  E  D  Q  P  R  S  P  L  R  F  S  P  L  P  F  Q  N  G  H  S  L  K  C  S  S  R  P  L  V  F  I  L  Y  L  L  T  I  W  T  F  R  E  K  L  H  N  V  M  L  H  S  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  P  Q  N  T  F  L  I  G  C  C  F  F  S  L  S  S  Q  H  F  I  S  D  P  D  Q  F  L  I  S  K  V  L  S  L  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  I  Y  F  *  P  H  K  I  I  S  Q  S  M  K  L  S  S  Q  W  A  S  R  N  L  Q  V  I  *  T  S  H  A  S  C  L  S  T  *  S  I  C  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  V  V  L  Q  *  F  H  P  S  P  L  S  Q  V  Q  I  L  L  S  K  D  I  L  *  A  T  M  V  R  I  D  F  T  L  N  P  I  *  I  V  P  P  L  L  *  C  K  H  Y  R  G  Q  L  Q  I  M  G  R  I  V  T  F  M  H  F  *  L  </second_frame>
            <third_frame>   S  I  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  Q  S  N  N  F  R  D  A  K  F  G  *  L  L  C  I  V  S  H  L  D  R  N  E  V  S  R  L  S  *  T  I  N  S  Y  P  N  G  V  I  L  T  H  C  L  G  K  T  N  H  E  V  H  C  D  S  L  H  F  H  S  R  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  R  F  G  H  F  A  K  N  S  T  M  S  C  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  V  V  A  S  L  A  S  P  R  N  T  L  S  R  I  R  I  N  F  S  S  V  K  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  N  L  I  K  S  L  A  R  V  *  N  S  L  A  N  G  R  L  E  T  C  K  *  S  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  R  L  R  W  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  H  S  C  T  F  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147275" stop="147003"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADLVKLSTVTQMESYLPIVLGRPTTKSIAILSTSIPEWAFSEVFLQASGVHTLLADDLDISRKTPQCHASFYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146992" stop="146753"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVNQIIDAGYTYPSLNPQNTFLIGCCFFSLSSQHFISDPDQFLISKVLSLNLVKKGRSCLHTGQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146964" stop="146725"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILKTPSSSVVASLASPRNTLSRIRINFSSVKCFPLILSRKEDLASTQAKNPPFSFTSNLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0004C15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147265" stop="147038"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNYQQLPKWSHTYPLSWEDQPRSPLRFSPLPFQNGHSLKCSSRPLVFILYLLTIWTFREKLHNVMLHSTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 276 chains have been computed
$ 
$ memory statistics:
$ 72984 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 3173 bytes was the average size of a spliced alignment
$ 16176 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1617 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 339 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:49:20
-->
