psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 34 0 0 0 0 0 1 6 + SGN-U562880 1706 1608 1642 C03HBa0121O11.1 105887 5861 5901 2 7,27, 1608,1615, 5861,5874, 30 0 0 0 0 0 0 0 - SGN-U566191 1303 1052 1082 C03HBa0121O11.1 105887 96135 96165 1 30, 221, 96135, 38 1 0 0 0 0 1 3 - SGN-U567276 676 612 651 C03HBa0121O11.1 105887 96119 96161 2 11,28, 25,36, 96119,96133, 1134 0 0 0 0 0 5 3346 - SGN-U567536 1134 0 1134 C03HBa0121O11.1 105887 91426 95906 6 418,77,147,161,208,123, 0,418,495,642,803,1011, 91426,92137,93309,93561,94589,95783, 283 24 0 0 0 0 1 105 - SGN-U567543 1231 393 700 C03HBa0121O11.1 105887 93309 93721 2 147,160, 531,678, 93309,93561, 2242 6 0 0 0 0 12 3532 + SGN-U567962 2249 0 2248 C03HBa0121O11.1 105887 74648 80428 13 562,206,204,111,96,46,80,69,85,155,81,60,493, 0,562,768,972,1083,1179,1225,1305,1374,1459,1614,1695,1755, 74648,75863,76188,76843,77039,77235,77370,77866,78048,78265,78526,79732,79935, 365 11 0 0 0 0 3 355 - SGN-U567962 2249 1320 1696 C03HBa0121O11.1 105887 86384 87115 4 82,155,85,54, 553,635,790,875, 86384,86572,86857,87061, 213 16 0 0 1 5 3 446 - SGN-U567962 2249 1380 1614 C03HBa0121O11.1 105887 84579 85254 4 82,75,7,65, 635,717,797,804, 84579,84986,85177,85189, 140 0 0 0 0 0 0 0 - SGN-U569273 1846 0 140 C03HBa0121O11.1 105887 0 140 1 140, 1706, 0, 62 0 0 0 0 0 0 0 - SGN-U569274 763 0 62 C03HBa0121O11.1 105887 0 62 1 62, 701, 0, 38 1 0 0 0 0 1 3 + SGN-U569380 1294 1082 1121 C03HBa0121O11.1 105887 49746 49788 2 12,27, 1082,1094, 49746,49761, 952 1 0 0 1 1 10 1628 - SGN-U572298 954 0 954 C03HBa0121O11.1 105887 68673 71254 11 85,70,63,58,125,78,47,125,149,115,38, 0,85,155,218,276,401,479,526,651,800,916, 68673,68845,69101,69342,69530,69747,70096,70238,70445,71099,71216, 1336 0 0 0 0 0 4 938 + SGN-U573065 1344 1 1337 C03HBa0121O11.1 105887 45155 47429 5 341,148,437,58,352, 1,342,490,927,985, 45155,45779,46174,46916,47077, 571 18 0 0 1 208 5 380 - SGN-U573112 799 2 799 C03HBa0121O11.1 105887 63464 64433 6 55,32,155,141,151,55, 0,55,87,450,591,742, 63464,63520,63553,63908,64127,64378, 53 3 0 0 0 0 0 0 - SGN-U573112 799 629 685 C03HBa0121O11.1 105887 70099 70155 1 56, 114, 70099, 722 9 0 0 0 0 6 979 + SGN-U573113 758 2 733 C03HBa0121O11.1 105887 64679 66389 7 237,125,47,78,122,58,64, 2,239,364,411,489,611,669, 64679,64984,65203,65580,65752,66036,66325, 1915 0 0 0 0 0 4 2295 + SGN-U573831 1917 2 1917 C03HBa0121O11.1 105887 21489 25699 5 375,919,96,137,388, 2,377,1296,1392,1529, 21489,22851,24151,24872,25311, 878 1 0 0 6 8 4 921 + SGN-U574439 897 0 887 C03HBa0121O11.1 105887 8547 10347 11 515,153,75,15,5,30,48,5,10,13,10, 0,515,668,744,760,765,796,847,852,863,877, 8547,9878,10133,10208,10223,10229,10259,10307,10314,10324,10337, 640 16 0 0 2 3 5 317 - SGN-U574702 659 0 659 C03HBa0121O11.1 105887 66593 67566 7 9,31,14,4,98,105,395, 0,11,43,57,61,159,264, 66593,66603,66634,66740,66794,66982,67171, 37 0 0 0 0 0 1 20 - SGN-U575385 842 653 690 C03HBa0121O11.1 105887 96107 96164 2 8,29, 152,160, 96107,96135, 656 0 0 0 0 0 0 0 - SGN-U583275 656 0 656 C03HBa0121O11.1 105887 27292 27948 1 656, 0, 27292, 740 4 0 0 0 0 0 0 - SGN-U585059 744 0 744 C03HBa0121O11.1 105887 98995 99739 1 744, 0, 98995, 38 1 0 0 1 9 1 4 + SGN-U585280 659 312 360 C03HBa0121O11.1 105887 70716 70759 2 31,8, 312,352, 70716,70751, 1034 1 0 0 0 0 4 3713 + SGN-U585316 1039 4 1039 C03HBa0121O11.1 105887 15998 20746 5 375,69,116,63,412, 4,379,448,564,627, 15998,19182,19330,19539,20334, 338 5 0 0 2 61 3 2947 + SGN-U587669 413 0 404 C03HBa0121O11.1 105887 16157 19447 4 84,115,27,117, 0,90,260,287, 16157,16246,19224,19330, 296 11 0 0 2 26 6 4324 - SGN-U588008 767 434 767 C03HBa0121O11.1 105887 38145 42776 7 41,6,79,22,4,102,53, 0,41,53,132,154,178,280, 38145,38187,38198,38308,38331,38342,42723, 758 14 0 1 0 0 8 1170 + SGN-U589102 774 1 774 C03HBa0121O11.1 105887 64695 66638 9 221,125,47,78,122,58,63,17,42, 1,222,347,394,472,594,652,715,732, 64695,64984,65203,65580,65752,66036,66325,66578,66596, 645 0 0 0 1 1 2 566 + SGN-U594073 647 1 647 C03HBa0121O11.1 105887 45245 46456 4 78,173,112,282, 1,80,253,365, 45245,45323,45815,46174, 488 4 0 0 3 57 1 305 + SGN-U594315 604 54 603 C03HBa0121O11.1 105887 24870 25667 4 139,187,144,22, 54,248,436,581, 24870,25314,25501,25645, 40 0 0 0 0 0 0 0 - SGN-U594315 604 198 238 C03HBa0121O11.1 105887 25309 25349 1 40, 366, 25309, 36 0 0 0 0 0 0 0 - SGN-U594315 604 1 37 C03HBa0121O11.1 105887 24193 24229 1 36, 567, 24193, 495 37 0 0 0 0 2 734 + SGN-U594610 533 0 532 C03HBa0121O11.1 105887 90948 92214 3 6,449,77, 0,6,455, 90948,91395,92137, 722 8 0 0 1 4 2 987 - SGN-U594616 734 0 734 C03HBa0121O11.1 105887 94173 95890 4 6,617,65,42, 0,6,623,692, 94173,94180,95783,95848, 35 0 0 0 0 0 1 20 - SGN-U595612 374 143 178 C03HBa0121O11.1 105887 96107 96162 2 8,27, 196,204, 96107,96135, 707 25 0 0 9 40 10 1767 + SGN-U596314 784 0 772 C03HBa0121O11.1 105887 60597 63096 18 43,32,86,4,50,50,21,104,11,7,101,31,148,7,24,5,4,4, 0,43,75,162,171,232,293,314,419,430,437,538,577,725,733,758,763,768, 60597,60641,62071,62157,62170,62220,62270,62292,62396,62416,62552,62736,62767,63048,63058,63082,63088,63092, 668 0 0 0 0 0 0 0 - SGN-U596329 668 0 668 C03HBa0121O11.1 105887 81651 82319 1 668, 0, 81651, 213 14 0 0 2 28 2 33 - SGN-U597471 395 8 263 C03HBa0121O11.1 105887 49216 49476 3 121,51,55, 132,258,332, 49216,49357,49421, 52 1 0 0 0 0 2 37 - SGN-U597471 395 210 263 C03HBa0121O11.1 105887 83202 83292 3 21,9,23, 132,153,162, 83202,83254,83269, 287 5 0 0 0 0 0 0 - SGN-U597694 292 0 292 C03HBa0121O11.1 105887 14313 14605 1 292, 0, 14313, 654 0 0 0 2 5 3 364 - SGN-U598397 664 0 659 C03HBa0121O11.1 105887 53191 54209 5 15,43,29,177,390, 5,24,68,97,274, 53191,53208,53251,53437,53819, 36 0 0 0 0 0 1 18 + SGN-U601485 632 565 601 C03HBa0121O11.1 105887 96107 96161 2 9,27, 565,574, 96107,96134, 730 0 0 1 0 0 8 2461 - SGN-U601562 731 0 731 C03HBa0121O11.1 105887 56191 59383 9 25,63,58,125,78,47,125,154,56, 0,25,88,146,271,349,396,521,675, 56191,56477,57275,57443,57661,57993,58129,58325,59327, 674 2 0 5 0 0 0 0 - SGN-U601811 681 0 681 C03HBa0121O11.1 105887 29094 29775 1 681, 0, 29094, 41 0 0 0 1 7 1 62 + SGN-U601997 589 100 148 C03HBa0121O11.1 105887 139 242 2 24,17, 100,131, 139,225, 473 4 0 0 0 0 4 1224 + SGN-U602713 484 7 484 C03HBa0121O11.1 105887 12557 14258 5 17,171,75,108,106, 7,24,195,270,378, 12557,12824,13296,13577,14152,