##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C03SLe0111P12-FGCs4/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 95158, name = C03SLe0111P12.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	1311	9444	0.51	-	.	ID=g1
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	1311	9444	0.51	-	.	ID=g1.t1;Parent=g1
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	1311	1313	.	-	0	Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	1389	2231	0.94	-	.	Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	2379	3918	0.8	-	.	Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	6034	6106	1	-	.	Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	6302	7347	0.99	-	.	Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	7429	7519	0.98	-	.	Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	7610	8114	0.95	-	.	Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	8202	9396	0.72	-	.	Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	1311	1388	0.95	-	0	ID=g1.t1.cds;Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	2232	2378	0.92	-	0	ID=g1.t1.cds;Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	3919	6033	1	-	0	ID=g1.t1.cds;Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	6107	6301	0.99	-	0	ID=g1.t1.cds;Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	7348	7428	1	-	0	ID=g1.t1.cds;Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	7520	7609	0.98	-	0	ID=g1.t1.cds;Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	8115	8201	0.95	-	0	ID=g1.t1.cds;Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	9397	9444	0.72	-	0	ID=g1.t1.cds;Parent=g1.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	9442	9444	.	-	0	Parent=g1.t1
# protein sequence = [MNNVQRNSLGERNVEQAITALKRGSYLLKYGRRGKPKFCPFRLSTDETRLIWYVEKEEKQLQLSQVSRIIPGQRTANF
# LRFPRPEKEYQSFSLLYGKSSLDLICKDKEEAEVWFVALRALTSRVDCQKWTSDIRYDIAYSDGSTSATQRRSHSALSSSSGSSSTPYEDPKKNLLGS
# VPSQSPPRKRLERAFSDYLLYNSAAKCSSHREFATSSFNSRSYGNLDDEIGQSSTDTIRSSFSSAISSSSHGSFANADTLCDILIWGEGIGDGLLGGG
# MCGLGKFETARRDAPLPRTLESALILDAQYVACGSRHAVLITKQGEIFSWGEGLSGRLGHGVESDISSPKLIDSLCGLNVTSAACGDYHTCATTITGD
# LYTWGEGTFNFGLLGHDTGISHWIPKKVRGPLVGKHVSYVSCGPWHSAVITSVGQLFTFGDGTFGALGHGDRSSIGIPREVETLQGLRTVRVACGHWH
# TAAVVELSFDDSSSCNSPPWKLFTWGNGDDGQLGHEDNASRHTPCKVVQLDGINFSRVACGHSITVALTTLGQVYTMGKVDYGQLGIPGSTGKFPSRV
# QGKITDCFIEEIACGSFHVVSLSSNSELYTWGKGGNGQLGHGDNHDRNTPTLVEALKAKKVKDVVCGNNFTAAICLHREVSLADNSICAGCQSPFNLR
# RKRHNCYNCGLVFCTVCTSKRSVRASLAPKMNKPYRVCEDCFTKLNKGLDIGLTCLPPKVTTGSLQKNTGERRKETSPSKQKGLLSRLSSFNSFRSDD
# KRFRKNQKQDSNSENVSPIPNGNTQSEVSQTSSQLLSFSSCPEILSVSFVGSTSHSQAGSPASFESCSSNSVLLRSAFAAQANHEVDLDDSKQTSESL
# KKEISILKEQVDILTQRSLFLEAELEKKSTQLQEKSEEAITETDKNNAAKEVIKSLMTQVKGNTARAPQDGSAENLIHSTMTVP]
# end gene g1
###
# start gene g2
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	12529	19830	0.16	-	.	ID=g2
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	12529	19830	0.16	-	.	ID=g2.t1;Parent=g2
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	12529	12531	.	-	0	Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	12595	12731	0.67	-	.	Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	12976	14144	0.4	-	.	Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	14268	14360	0.9	-	.	Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	14388	17073	0.53	-	.	Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	17481	17875	1	-	.	Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	18004	18130	1	-	.	Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	18250	19762	0.71	-	.	Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	12529	12594	0.67	-	0	ID=g2.t1.cds;Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	12732	12975	0.38	-	1	ID=g2.t1.cds;Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	14145	14267	0.99	-	1	ID=g2.t1.cds;Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	14361	14387	0.91	-	1	ID=g2.t1.cds;Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	17074	17480	0.73	-	0	ID=g2.t1.cds;Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	17876	18003	1	-	2	ID=g2.t1.cds;Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	18131	18249	0.72	-	1	ID=g2.t1.cds;Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	19763	19830	1	-	0	ID=g2.t1.cds;Parent=g2.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	19828	19830	.	-	0	Parent=g2.t1
# protein sequence = [MDTENPAPIVEKDTTDAETSLDSSHLRKKIQKKVPKRIHKAEREKMKREHLNELFLGLADALELSEQMNGKASVLSEA
# ARFVKDMLSQIKHMRTENTTLLSESQYLSVEKKELEDENTVLEAEISKLQNEVKAREAETSLDLNLAPPEIHHTEFASQTNYMRLPASEHGFQQSQMM
# NPVYVFPLSSNPQAYPAPDAADPMAMPSSTVKKPQPRYPTPNDVWPSQILEKRPQLLRQEVQDGAPVVSLVYPLYASIRAIETKSPVDDQQWLTYWIL
# YSMITLFELTFAKLIEWLPFWSYAKLIATCWLVIPYFNGAAYVYEHYIRTYIVQRKAVNIWYVPRKKDVFSKPDDILTAAEKYIKEHGTQAFEEMIHK
# ADGERKTHTSNYVFYDDDYRY]
# end gene g2
###
# start gene g3
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	21428	26517	0.13	-	.	ID=g3
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	21428	26517	0.13	-	.	ID=g3.t1;Parent=g3
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	21428	21430	.	-	0	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	21536	22404	0.91	-	.	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	22483	23110	0.93	-	.	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	23177	23489	0.47	-	.	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	23568	24435	0.9	-	.	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	24550	24647	0.94	-	.	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	24700	25109	0.69	-	.	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	25175	25260	0.99	-	.	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	25428	26405	0.52	-	.	Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	21428	21535	1	-	0	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	22405	22482	0.91	-	0	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	23111	23176	0.99	-	0	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	23490	23567	0.47	-	0	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	24436	24549	0.95	-	0	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	24648	24699	0.66	-	1	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	25110	25174	0.99	-	0	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	25261	25427	0.57	-	2	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	26406	26517	0.57	-	0	ID=g3.t1.cds;Parent=g3.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	26515	26517	.	-	0	Parent=g3.t1
# protein sequence = [MVRVRNYCSISKPAIWIWLISALTFYLLFLMANRNSREWSISNAEQRSRLYEKMEKDLEDHGATFLKQGETTQSLSLS
# DLFILKDGVVTPVLKPANPPVRANVLYLNPEYSVPIAMFHGSHHITAVPASESEIEAEANAVRAVSESICPLKITLDRVVLTSTGVLVGCWQVDSGSD
# PVTIRQKLRNALPHAPAKQLYDAVMLHTSFARLLGHPSSWPEEANKVSVLQFLYELVSRLNNKIHGTKAIVGELWYVEEYDILALALDGRMKVRKFQL
# GCSKV]
# end gene g3
###
# start gene g4
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	37513	38824	1	-	.	ID=g4
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	37513	38824	1	-	.	ID=g4.t1;Parent=g4
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	37513	37515	.	-	0	Parent=g4.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	38446	38527	1	-	.	Parent=g4.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	37513	38445	1	-	0	ID=g4.t1.cds;Parent=g4.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	38528	38824	1	-	0	ID=g4.t1.cds;Parent=g4.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	38822	38824	.	-	0	Parent=g4.t1
# protein sequence = [MDGGGDDHLHQRHQHNHRSIATFPFQLLEKKEDEACSSSSNAAAAYTTSLAISNTDNTHTNPNNTPRSTISTLQISAS
# GADTSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQ
# LRSSYFNPNFSLSQRRGLFPPGIGLSTDTSATTLLNFQSANLSSNIQLQTKPELRDNSIDLTESSPAEDNLSRKRRSDLDLEQQQHQQQQQQMGSYLL
# QSSTGTMPTSHSSIPANFWMVTNPIPSNQVMGGDPIWPFQSVSNSGALYRGTMPSGLQFMNFPTSVALLPSQQLGGGSSGGGGGNNGLGEGQLGMFAG
# LNPYRGGGGVSESQASGSHSHHGGGTDDRHDTTSHHS]
# end gene g4
###
# start gene g5
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	50590	50892	1	-	.	ID=g5
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	50590	50892	1	-	.	ID=g5.t1;Parent=g5
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	50590	50592	.	-	0	Parent=g5.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	50590	50892	1	-	0	ID=g5.t1.cds;Parent=g5.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	50890	50892	.	-	0	Parent=g5.t1
# protein sequence = [MARRVGEDEIDTSQTYSTAYGSLRFRLIHAKRKMEGEERGVVGVCRSRSVFLGFCREGRERASVGETRERGKERMKEG
# GRVGRKERGFWGIGFSGFLSGN]
# end gene g5
###
# start gene g6
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	53872	55467	0.58	+	.	ID=g6
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	53872	55467	0.58	+	.	ID=g6.t1;Parent=g6
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	53872	53874	.	+	0	Parent=g6.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	53986	54609	0.65	+	.	Parent=g6.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	53872	53985	0.79	+	0	ID=g6.t1.cds;Parent=g6.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	54610	55467	0.65	+	0	ID=g6.t1.cds;Parent=g6.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	55465	55467	.	+	0	Parent=g6.t1
# protein sequence = [MVTQAPDILRVWWGNLKECQKREISIYLGHLPSIMDFKLQGLAEPSQTSPLDNYEFYLSIRKFPIHTTRDAWAKVFYN
# LKEGDIQWVLPSFRSQMIAAQGAKLPFLVLPGIRGSRPYNPTRVMRQFGKVQTIPAQGDASSFIVDYNGKDKIPFAKIILQEWAGRVNMKWEVTEDRY
# GAGYVDEYKTWLHKDLRGVVDPTPRTSQKIEDVETRLQIYAYHFQQEWDRREQEFHKKEQEFQQRDQAYQLQELENQRLLAVTSQELADTRTCLIRLD
# TILDEQMNTLQAVPTSSKAAFAEPYVFTSKCIIREEVEKARRGAGSSTL]
# end gene g6
###
# start gene g7
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	63292	63594	1	-	.	ID=g7
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	63292	63594	1	-	.	ID=g7.t1;Parent=g7
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	63292	63294	.	-	0	Parent=g7.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	63292	63594	1	-	0	ID=g7.t1.cds;Parent=g7.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	63592	63594	.	-	0	Parent=g7.t1
# protein sequence = [MARRVGEDEIDTSQTYSTAYGSLRFRLIHAKRKMEGEERGVVGVCRSRSVFLGFCREGRERASVGETRERGKERMKEG
# GRVGRKERGFWGIGFSGFLSGN]
# end gene g7
###
# start gene g8
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	70341	72118	0.33	-	.	ID=g8
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	70341	72118	0.33	-	.	ID=g8.t1;Parent=g8
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	70341	70343	.	-	0	Parent=g8.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	70626	70899	0.97	-	.	Parent=g8.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	71222	71765	1	-	.	Parent=g8.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	70341	70625	0.99	-	0	ID=g8.t1.cds;Parent=g8.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	70900	71221	0.95	-	1	ID=g8.t1.cds;Parent=g8.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	71766	72118	0.34	-	0	ID=g8.t1.cds;Parent=g8.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	72116	72118	.	-	0	Parent=g8.t1
# protein sequence = [MSNSVMPIVDLSPFFLRDEDGQRKAREVINEACSRYGFFQIINHGVPLDLMSRALNLSKSFFECPVEEKMNCSPLPGA
# PFPAGYNRKPNPSYEFAEYLVMLHPGSTFNVFPPNHPQLQEVMGDLFNQFAKIGAILESILSESLGLPPSILQEFNNERNSDVLTALYYLPATENEKM
# GINSHRDVGCITFVLQDEVGGLEVQKDGNWIPVTPNKGALVVNIGIVLQVLTNDKYKSPNHRAMRPNGRSRNSFSFFYNVSGEKWLEPLPHFTKQIDE
# KPNYKGFIYSDYLQKRNENKLKRAAGLEEDLGLSHFSLTRSIENH]
# end gene g8
###
# start gene g9
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	72801	75693	0.23	-	.	ID=g9
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	72801	75693	0.23	-	.	ID=g9.t1;Parent=g9
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	72801	72803	.	-	0	Parent=g9.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	73071	73161	0.66	-	.	Parent=g9.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	73342	74937	0.48	-	.	Parent=g9.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	75260	75358	0.94	-	.	Parent=g9.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	72801	73070	0.4	-	0	ID=g9.t1.cds;Parent=g9.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	73162	73341	0.48	-	0	ID=g9.t1.cds;Parent=g9.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	74938	75259	0.98	-	1	ID=g9.t1.cds;Parent=g9.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	75359	75693	0.94	-	0	ID=g9.t1.cds;Parent=g9.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	75691	75693	.	-	0	Parent=g9.t1
# protein sequence = [MASFDIPTIDVSPFFKSDENEGAKKQAIEQIREACVSYGFFQIVNHGIPSDLLSRTIDMYKTFFGCSDEEKLCLPDNY
# LKSTPNSAETFEHLWFRFPFSGFNNCRSITPHFKKVLEEIVSHFTKLGVVLEGIISECLGLPPDFLSNYRNGRSRDSLMGLHYFPATEDDNTGKPAHE
# DPGCFTILYQDEIGGLQVHKDDHWIPIPPSKDKLVVNIGDVIQRFIVRTPLFTSDDNIENLHMKILASSLFSTRMKLKALRFLKMTIAPSKDKLIVNI
# GDVIQVLSNNKFKSATHRAANPSETDRYSYAFFYNVQGSKWVEPLPQFTEEIGESPKYRGFLFEEYLQLRIKNRSHPPARPEDLIHITHYSISN]
# end gene g9
###
# start gene g10
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	76433	77554	0.97	-	.	ID=g10
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	76433	77554	0.97	-	.	ID=g10.t1;Parent=g10
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	76433	76435	.	-	0	Parent=g10.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	76703	76788	1	-	.	Parent=g10.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	77111	77216	0.98	-	.	Parent=g10.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	76433	76702	0.99	-	0	ID=g10.t1.cds;Parent=g10.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	76789	77110	0.98	-	1	ID=g10.t1.cds;Parent=g10.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	77217	77554	0.98	-	0	ID=g10.t1.cds;Parent=g10.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	77552	77554	.	-	0	Parent=g10.t1
# protein sequence = [MASFDIPTIDVSPFITSEENEEGKKKAIEQMREACVNYGFFQIANHGIPLDLLSRIMDMYKTFFACSDEEKLSVPSDN
# YFKSTKKSAGTYEQLLFHLSSSGFNVCPENPPRFKQVLEEMASHFTNLGFVLGRIISECLGIPPNFLANYRNDQAKDFLLGIHYSPATEAENVGKSAH
# KDPGCITILYQPEVGGLQVQKDEQWIPIAPSKDKLVVNIGDVIQVLSNNKFKSATHRVIRPRETNRYSCAFFYNVQGDKWVEPLPQCTKEIGESPKYR
# GFIFKEYVQRRRRDETHPPARPEDLFNISHYSIST]
# end gene g10
###
# start gene g11
C03SLe0111P12.1	AUGUSTUS_ab_initio	gene	83919	94646	0.08	+	.	ID=g11
C03SLe0111P12.1	AUGUSTUS_ab_initio	transcript	83919	94646	0.08	+	.	ID=g11.t1;Parent=g11
C03SLe0111P12.1	AUGUSTUS_ab_initio	start_codon	83919	83921	.	+	0	Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	83957	84890	0.5	+	.	Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	85092	85172	0.39	+	.	Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	85212	85559	0.95	+	.	Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	85710	88004	0.57	+	.	Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	intron	88191	94459	0.9	+	.	Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	83919	83956	0.39	+	0	ID=g11.t1.cds;Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	84891	85091	0.36	+	1	ID=g11.t1.cds;Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	85173	85211	0.5	+	1	ID=g11.t1.cds;Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	85560	85709	0.83	+	1	ID=g11.t1.cds;Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	88005	88190	0.92	+	1	ID=g11.t1.cds;Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	CDS	94460	94646	0.93	+	1	ID=g11.t1.cds;Parent=g11.t1
C03SLe0111P12.1	AUGUSTUS_ab_initio	stop_codon	94644	94646	.	+	0	Parent=g11.t1
# protein sequence = [MSRKLTGDSLGFLGKRVKRRSLNDDARIGKRVVDDSDGDSAPRSKEEIRNGNMKVVEDDARGEVSGHGCLPLGITGML
# VXFVILLAEADVEYSFKVAVVMPNLDELLLGTPTHVFVSFWYEWKQTRHYPFHYSELVRLAALYNPFVMECLKEPYDDTQLRWNVADLLTRVASKFSV
# NGNLSGRKREIKFQPSFVYFPIGHNNITRYFSAPATETEKAKQDTLFKTILKEAVTFHFWNGLTSAMVPEAGSLAHRLINYNCLRCSDTL]
# end gene g11
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C03SLe0111P12-FGCs4/AUGUSTUS_ab_initio/seq_with_defline_removed