##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C03HBa0203C09-Bdfpd/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 112639, name = C03HBa0203C09.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	5582	6868	1	+	.	ID=g1
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	5582	6868	1	+	.	ID=g1.t1;Parent=g1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	5582	5584	.	+	0	Parent=g1.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	5582	6868	1	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	6866	6868	.	+	0	Parent=g1.t1
# protein sequence = [MEAKCTQPPSSATIIRRTTSTNRSGSGNGTIILGKYQLGRLLGRGSFAKVYHGLCLDDNTNIAIKVIDKKSIIGTNVS
# MEPRILREISIMSCLNHPNIIKLHEVMATKSKIYLVMEIACRGDLHAKLIRHGRFSESTARFYFHQLVSALHYCHQNGVTHRDIKPQNILLDQNNNIK
# ISDFGLSALPEQLKNSLLHTACGTPGYTAPEVAYGKGYNGEKADSWSCGVILFAFLSGYIPFDSGNLSNMYRAIHRRDFRFPNWVSKSARSVINKLLD
# PNPSTRLSIEQLMNLSWFKKSNQQQRSSNCVFEKNRTNLGGINAFDILSMSSGLNLSRLFESDLINREMKFTTNARIEEVEEKVVKIGEGGGYRVERG
# KGRGIELVKGRVVLMVEILEVAMELLLVEVKVVNNGGLEFDDSQWEDLKFGMKDIC]
# end gene g1
###
# start gene g2
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	8590	14294	0.31	-	.	ID=g2
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	8590	14294	0.31	-	.	ID=g2.t1;Parent=g2
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	8590	8592	.	-	0	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	8654	8843	0.95	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	8924	9532	0.97	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	9602	10054	0.96	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	10253	10412	0.98	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	10536	10707	1	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	10769	11039	1	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	11218	11380	1	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	11460	11585	0.99	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	11708	11826	0.59	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	11910	11999	0.94	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	12152	12437	0.83	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	12577	12819	0.94	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	12895	13051	1	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	13265	13357	1	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	13580	13667	1	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	13972	14143	0.85	-	.	Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	8590	8653	0.95	-	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	8844	8923	0.95	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	9533	9601	0.96	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	10055	10252	1	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	10413	10535	0.98	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	10708	10768	1	-	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	11040	11217	1	-	2	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	11381	11459	0.99	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	11586	11707	0.6	-	2	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	11827	11909	0.92	-	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	12000	12151	0.99	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	12438	12576	0.79	-	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	12820	12894	1	-	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	13052	13264	1	-	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	13358	13579	1	-	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	13668	13971	0.96	-	2	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	14144	14294	0.86	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	14292	14294	.	-	0	Parent=g2.t1
# protein sequence = [MDCVGASSPKEFPLGLDASLEEEYFSQSSLLQDFTSIPNIDKAWTFTSDGGSQGMFSISQPNLLANKKRRYILPCHIS
# KESTNAVSFQWAAFPIEMSNVSMMIPSPSGSKLLVVRNPENDSPTKFEIWGSSLVEKEFYVPASVHGSVYSDGWFEGISWNSDETLIAYVAEEPAPSK
# PTFTTFGYKKDNSTDKECGSWKGQGDWEEEWGETYAGKRQPALFIIDVNSGVVRPVEGIGKSLSVGQVVWAPSREGLEQYLVFVGWPSDNRKLGIKYC
# YNRPCALYAVKAPFSKVEVHQSGTNAAKDVSPIKLTQSISSAFFPRFSPDGKLLIFLSARSSVDSWAHSATDSLHKIDWSFSGKPTPDATIVDVVPIV
# MCPEDGCFPGLYCFSVLSRPWLSDGYTMILSSIWGSTQVIISVNVISGNISRISPGDSNFSWNMLALDGDNIIAVCSSPVDVPAIKYGSLARKASAET
# SWSWLDISSPISRCSEKVISLLSSRQFSILKIPVRDISENLTKGASKPYEAIFVSSKTQSRNVCDPLIVVLHGGPHSVSLSSFSKSLAFLSSLGYSLL
# IVNYRGSLGFGEEAVQSLPGKIGSQDVNDVLAALDHVIEKGLADPSKISVVGGSHGGFLTTHLIGQAPDKFAAAVARNPVCNLALMVGTSDIPDWCYA
# ETFGENGKTNFTEATSSEHLDAFYRKSPILHVSKVRTPTLFLLGAKDLRVPMSTGLQYARALKEKGGVEVKVIMFPEDTHALDRPQSDFESFLNIGVW
# FKKHCK]
# end gene g2
###
# start gene g3
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	16118	20795	0.89	+	.	ID=g3
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	16118	20795	0.89	+	.	ID=g3.t1;Parent=g3
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	16118	16120	.	+	0	Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	16349	17074	1	+	.	Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	17174	18348	0.95	+	.	Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	18469	18619	0.99	+	.	Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	18686	19108	0.99	+	.	Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	19175	20353	0.95	+	.	Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	20432	20564	1	+	.	Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	16118	16348	1	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	17075	17173	0.99	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	18349	18468	1	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	18620	18685	0.99	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	19109	19174	1	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	20354	20431	1	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	20565	20795	1	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	20793	20795	.	+	0	Parent=g3.t1
# protein sequence = [MADNPPEVYAADDFLEQILAIPSYASLPVTDLTAGASSENSTSGVSQLQQQPLFPLGLSLDNGFADANNTGGFQVKTE
# REAMNMGNLYPGLEHLQSHAVCLSVPQVHQVQPFQGHPTSSAIVTIPHQPAIRPRVRARRGQATDPHSIAERLRRERISERIKALQELAPSCNKTDRA
# AMLDEILDYVKFLRLQVKVLSMSRLGGTSAAAQVVADIPLQSVEGDTCESHSNQRVWEKWSDSETEQEVAKLMEEDVGTAMQYLQSKSLCIMPISLAA
# LIYPTQQSDNQSMVKPEQAAPL]
# end gene g3
###
# start gene g4
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	22335	23075	0.66	-	.	ID=g4
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	22335	23075	0.66	-	.	ID=g4.t1;Parent=g4
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	22335	22337	.	-	0	Parent=g4.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	22654	22899	1	-	.	Parent=g4.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	22335	22653	0.67	-	1	ID=g4.t1.cds;Parent=g4.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	22900	23075	0.99	-	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	23073	23075	.	-	0	Parent=g4.t1
# protein sequence = [MEKILNLKATELRLGLPGTEEEVDHQQIVPNSKNKKRSLSEYEDESSSDYEPTTPPVAKAQIVGWPPVRSYRKNTLQI
# TTKKTEAHQDQCGIYVKVSMDGAPFLRKIDLKMYKCYTELLKAMEKMFKLNIGEYSEREGYKGSEFAPVYEDKEGDLMLVGDVPWE]
# end gene g4
###
# start gene g5
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	28364	34206	0.49	+	.	ID=g5
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	28364	34206	0.49	+	.	ID=g5.t1;Parent=g5
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	28364	28366	.	+	0	Parent=g5.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	29045	32550	0.52	+	.	Parent=g5.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	28364	29044	0.86	+	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	32551	34206	0.79	+	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	34204	34206	.	+	0	Parent=g5.t1
# protein sequence = [MDFVELEAIEGLRWSWNSWPVSKSEASGLIIPLSIMCTPLMHFNELPVLPYDPLICTQCGAVLNPYARVDYQSRIWVC
# PFCYRKNPFPKSYLGINENNIPAELFPTYSTVEYHLGKKGLAQNPNSSSNFGNMSLSSKMPSFSSTSSSLDWAGYGIGPAFVFVVDACTSDEELGVVK
# NELLHVIAQLPETALVGLVVFDSMVRVYDLGFGECCRVVMFHGERELSSEQTKQLLGIHRMKYQAGMVHMAPKQGFLIPLSEGEFSITSAIEDIHSSP
# QVMPGHRPLRATGVAVSVAVGLLEGCLVSAGSRIMVFTSGPATIGPGMIVNSDFGNTIRNQRDIGNGYAPYYKKSSDFYKHIARRLSDSSIALDLFAC
# SLDQVGAAELRAPVESSGGFMMLTESFDSDQFRKCLRHIFSHDEVGNLKMCLDATIEIVTTKDVKICGALGSCVSLQKKNGSVSDKEIGEGATYMWKL
# GTLTDKMCIAFFFEVGDEQKAQPSSAFFIQFITNYRYGSMGIRKRVITAARRWVGNHSPEIAAGFDQEAAASVMARLAIDRAESNFSQDVVRWLDKRL
# IRFASKFGDYIPEDPSSFRLATNLSLFPQFIYYLRRSQFIDVFNCTPDETAFFRLLLNREGVVRSLIMVQPTLFQYSFDGPPVPVLLDICSVSPDVIL
# LFDSYFYVVIHYGSKIAQWRKLGYDKDPSHDSFRKLLEAPEIDAEQLVSERIPVPKLVKCDQHSSQARFLLARLNPSVTHNSTYTQGSDIIFTEELSL
# QVFIEHLQALAVQG]
# end gene g5
###
# start gene g6
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	36303	36971	0.16	+	.	ID=g6
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	36303	36971	0.16	+	.	ID=g6.t1;Parent=g6
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	36303	36305	.	+	0	Parent=g6.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	36570	36938	0.39	+	.	Parent=g6.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	36303	36569	0.37	+	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	36939	36971	0.4	+	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	36969	36971	.	+	0	Parent=g6.t1
# protein sequence = [MMIMGREGGGHVVPVDPGTVVGGLKKKGAGARSWLLMDASGLETVLDVDKYEIMHRVQIHARDLRIIDPLLSYPSAIL
# GRERAIVLNLENPGLLSIGLR]
# end gene g6
###
# start gene g7
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	40725	46150	0.16	+	.	ID=g7
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	40725	46150	0.16	+	.	ID=g7.t1;Parent=g7
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	40725	40727	.	+	0	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	40906	41050	0.96	+	.	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	41173	43019	0.77	+	.	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	43095	44062	0.77	+	.	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	44288	44402	0.83	+	.	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	44448	45528	0.68	+	.	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	45574	45660	0.75	+	.	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	45691	45830	0.78	+	.	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	45951	46063	1	+	.	Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	40725	40905	0.44	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	41051	41172	0.96	+	2	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	43020	43094	0.77	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	44063	44287	1	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	44403	44447	0.83	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	45529	45573	0.85	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	45661	45690	0.78	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	45831	45950	1	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	46064	46150	0.98	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	46148	46150	.	+	0	Parent=g7.t1
# protein sequence = [MISSKFSIGQVLLRDPSDDNVTPVVEELKRRLKPMNANREDQREEKDSNVQHDIEATDEDESPFEFRALEVALEAICS
# YLAARTLELETAVYPALDMLTSKISSRNLDRVRKLKSQMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGASPVSGSGAASWFLASPTIGSKIS
# RASRASIATVRGDENDVEELEMLLEAYFMQIDGTFNKLTTLREYIDNTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLIAGIFGMNIPYSWNEE
# HGYMFKWVVAVSGIICAVIFLLIISYARYKGLVGS]
# end gene g7
###
# start gene g8
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	48096	48540	0.86	-	.	ID=g8
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	48096	48540	0.86	-	.	ID=g8.t1;Parent=g8
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	48096	48098	.	-	0	Parent=g8.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	48375	48456	1	-	.	Parent=g8.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	48096	48374	0.86	-	0	ID=g8.t1.cds;Parent=g8.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	48457	48540	1	-	0	ID=g8.t1.cds;Parent=g8.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	48538	48540	.	-	0	Parent=g8.t1
# protein sequence = [MSKYFVDVHQDLGYAVDWPSLLVRPIFKILTSKMPKVFVEVHQDLGDESGWGSPTHFNGQMLLEERIPPILTISVCCS
# TPFFGDRIPTSKMPKFIMDIRQDLGYVVGWPSRQVRPIFKVK]
# end gene g8
###
# start gene g9
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	49100	49802	0.64	-	.	ID=g9
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	49100	49802	0.64	-	.	ID=g9.t1;Parent=g9
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	49100	49102	.	-	0	Parent=g9.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	49616	49718	0.78	-	.	Parent=g9.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	49100	49615	0.77	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	49719	49802	0.65	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	49800	49802	.	-	0	Parent=g9.t1
# protein sequence = [MPKKFADVRQDLGYASACPSRLVRPIFKKFFVDISQDLGYASGWPSQQVRPIFKVKRALKRAYLPIHRFSCSIVHHFL
# GLRIPKSKMPKRIVGVREYLGYEAGCPSRQVRPIFKVKRAAKRAYPPISSIFVCYSILFFGDPDSNIKNVEFFCGRPSQPWLCIRLALTAIATHFQGQ
# TSPEKRISPISMIFMSYRTPVFG]
# end gene g9
###
# start gene g10
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	53484	53762	0.74	-	.	ID=g10
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	53484	53762	0.74	-	.	ID=g10.t1;Parent=g10
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	53484	53486	.	-	0	Parent=g10.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	53484	53762	0.74	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	53760	53762	.	-	0	Parent=g10.t1
# protein sequence = [MLKFFVDVCKDLGYASSWCSRSFQPIFKVKRDLKHAYPPFQRFSCAIANHFLGGPDIAVKNANFFVDIRQDLVYAAGW
# TSRKVQPILNVKLA]
# end gene g10
###
# start gene g11
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	55414	58605	0.28	-	.	ID=g11
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	55414	58605	0.28	-	.	ID=g11.t1;Parent=g11
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	55414	55416	.	-	0	Parent=g11.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	55686	58358	0.28	-	.	Parent=g11.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	55414	55685	0.4	-	2	ID=g11.t1.cds;Parent=g11.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	58359	58605	0.51	-	0	ID=g11.t1.cds;Parent=g11.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	58603	58605	.	-	0	Parent=g11.t1
# protein sequence = [MPNSFVDVRQDLVYEYDWPSRLVRPIWMVKRAPKRAYPSFRRFSCAIANHFLGDPDSDVKNANFFRGRPSRPCLYIRL
# AITACLVLTVISTHFQGQTRPEASIRPISTIFVCYSTPFLGDPDLDVKNGNFIMDIRQDLVYVAGWPSRPVRPILKVKLALKRAYPDFDDFHVL]
# end gene g11
###
# start gene g12
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	59850	60371	0.6	-	.	ID=g12
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	59850	60371	0.6	-	.	ID=g12.t1;Parent=g12
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	59850	59852	.	-	0	Parent=g12.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	59850	60371	0.6	-	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	60369	60371	.	-	0	Parent=g12.t1
# protein sequence = [MPNFFVDVRQDLVYAYCWPSRLVRPIWKVKRAPKQAYPSFRQFSCAIAHHFWGDPDSDIKNAKFFVDVRQDLVYAYGW
# PSLLVQPVWKVKRASKLAYPSFRRFSCAIAHHFLGDSDSNVKNAKFFRGRPSRSRLCIRLTITACTTHLEGQTSPEASIPLISTIFVCYSTLCFG]
# end gene g12
###
# start gene g13
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	61659	62180	0.95	-	.	ID=g13
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	61659	62180	0.95	-	.	ID=g13.t1;Parent=g13
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	61659	61661	.	-	0	Parent=g13.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	61659	62180	0.95	-	0	ID=g13.t1.cds;Parent=g13.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	62178	62180	.	-	0	Parent=g13.t1
# protein sequence = [MPNFFVDVRQDLVYAYGWPSRLVRPIWKVIRALKRAYPSFRRFSCAIAHHFLGDPDSDVKNAKFFVDVRQDLVYAYSW
# PSRLVRPIWKVKRAPKRSHPSFRRFSCAIAHHFLGDPDSTVKNAKIFCGRPSRPCLCIRLAIRAGTTHLEGKTSPKASIPLISTIFVCYSTPFFG]
# end gene g13
###
# start gene g14
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	63876	64136	0.69	+	.	ID=g14
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	63876	64136	0.69	+	.	ID=g14.t1;Parent=g14
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	63876	63878	.	+	0	Parent=g14.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	63876	64136	0.69	+	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	64134	64136	.	+	0	Parent=g14.t1
# protein sequence = [MRGMLTSGLVRHSKWVVQAVMANRMHRQGLDGRPRKNLAFLTSESGSPKKWCAIAYENHRNEGCARFGARLTFQMGRS
# SRDGQPYA]
# end gene g14
###
# start gene g15
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	65351	65620	0.61	-	.	ID=g15
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	65351	65620	0.61	-	.	ID=g15.t1;Parent=g15
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	65351	65353	.	-	0	Parent=g15.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	65351	65620	0.61	-	0	ID=g15.t1.cds;Parent=g15.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	65618	65620	.	-	0	Parent=g15.t1
# protein sequence = [MPIFFVDVRQDLVYAYGWPSRLVRPIWKVKRALKQAYPSFRRFSCAIAYHFIGDPDSDVKNAKFFCGRPSRPCVYIRL
# AITGCTTHLEG]
# end gene g15
###
# start gene g16
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	66545	66886	0.58	-	.	ID=g16
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	66545	66886	0.58	-	.	ID=g16.t1;Parent=g16
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	66545	66547	.	-	0	Parent=g16.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	66545	66886	0.58	-	0	ID=g16.t1.cds;Parent=g16.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	66884	66886	.	-	0	Parent=g16.t1
# protein sequence = [MLNFFVDVRQDLVYAYSWPSRLVRPIWKVKRVPKRAYPSFRRFSCAIAHHFLGDPDFDVKNAKFFRGRSSRPFLCIRL
# AITDCTTHLEDQTSPKASKPLISTIFVFYRSPFFG]
# end gene g16
###
# start gene g17
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	67655	67960	0.93	-	.	ID=g17
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	67655	67960	0.93	-	.	ID=g17.t1;Parent=g17
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	67655	67657	.	-	0	Parent=g17.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	67655	67960	0.93	-	0	ID=g17.t1.cds;Parent=g17.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	67958	67960	.	-	0	Parent=g17.t1
# protein sequence = [MANFIMDVHQDLVYAYGLPSRLVRPIWKVKRAAKRAYPSFRRFSCAIAHHFLGDPDSDVKIAKFFRGRPSRPSLCIRL
# AITTCTTHLEGQTRPKRAYPSFR]
# end gene g17
###
# start gene g18
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	70014	71153	0.3	+	.	ID=g18
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	70014	71153	0.3	+	.	ID=g18.t1;Parent=g18
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	70014	70016	.	+	0	Parent=g18.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	70265	70996	0.37	+	.	Parent=g18.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	70014	70264	0.42	+	0	ID=g18.t1.cds;Parent=g18.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	70997	71153	0.58	+	1	ID=g18.t1.cds;Parent=g18.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	71151	71153	.	+	0	Parent=g18.t1
# protein sequence = [MRGMLISGLVSPSKWVVQAVMANFMHRQGLDGCPRKHLAILMSESGSPKKWCAIAHENRRNEGYARFGARLTFQMGRT
# SRDGQPKGLSVRPRKNLAFLTSESGSPKIWCAKAHENRRKDAHFRARFDLPNWSYKP]
# end gene g18
###
# start gene g19
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	73036	73377	0.27	-	.	ID=g19
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	73036	73377	0.27	-	.	ID=g19.t1;Parent=g19
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	73036	73038	.	-	0	Parent=g19.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	73036	73377	0.27	-	0	ID=g19.t1.cds;Parent=g19.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	73375	73377	.	-	0	Parent=g19.t1
# protein sequence = [MPNVFVYVCQDLVYAYGWPSRLVRLIRKVKRAPKQAYPSFRRFSCAIAHHFLGDLDSDVKNAKFFRGRPSRPCLCTRL
# PITACTTHLEGQTSPEASIPLISTIFVCYSTPFFG]
# end gene g19
###
# start gene g20
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	74146	74463	0.56	-	.	ID=g20
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	74146	74463	0.56	-	.	ID=g20.t1;Parent=g20
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	74146	74148	.	-	0	Parent=g20.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	74146	74463	0.56	-	0	ID=g20.t1.cds;Parent=g20.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	74461	74463	.	-	0	Parent=g20.t1
# protein sequence = [MPNFFVDVRQDLVYAYGWPSRLVRPIWKVKRALKRAYPSFRRFSCAIAHHLLGDPDSDVKNAKFFHGRLSRPCLCIRL
# AITACTTHLEGQTSPEASIPLISTIFV]
# end gene g20
###
# start gene g21
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	74708	74968	0.44	+	.	ID=g21
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	74708	74968	0.44	+	.	ID=g21.t1;Parent=g21
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	74708	74710	.	+	0	Parent=g21.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	74708	74968	0.44	+	0	ID=g21.t1.cds;Parent=g21.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	74966	74968	.	+	0	Parent=g21.t1
# protein sequence = [MRGMLASGIVLPSKWDAQAVMANRMHRQGLDGRPQKNLAFLTSESGSPKKWCAIAHENRRNEGYARFEARFTFQMGRT
# SRDGQPYA]
# end gene g21
###
# start gene g22
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	75227	75574	0.86	-	.	ID=g22
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	75227	75574	0.86	-	.	ID=g22.t1;Parent=g22
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	75227	75229	.	-	0	Parent=g22.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	75227	75574	0.86	-	0	ID=g22.t1.cds;Parent=g22.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	75572	75574	.	-	0	Parent=g22.t1
# protein sequence = [MPNFFVDVCKDLVYAYGFQSRIVRPIWKVKRAPKRAYPSFRRFSCAIAHHFLGDPDSDVKNAKFFCGCPSRPCLWMSV
# KTFSMHTVGHYGLYDPFGRSNELRSEHTPHFDDFRVL]
# end gene g22
###
# start gene g23
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	75868	76251	0.83	+	.	ID=g23
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	75868	76251	0.83	+	.	ID=g23.t1;Parent=g23
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	75868	75870	.	+	0	Parent=g23.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	75868	76251	0.83	+	0	ID=g23.t1.cds;Parent=g23.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	76249	76251	.	+	0	Parent=g23.t1
# protein sequence = [MMDNRMHRQGLNGRPQKNLAFSTSESGSPKKLCAISHKNCRNEGYARFGARLTFQMGRKAVMANRMHRQGLDRRPRKN
# LAFLTSESGSPKKWCAIAHENRRNKGYARFRTRLTFQMGRTRRDSQPYA]
# end gene g23
###
# start gene g24
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	76872	77297	0.77	-	.	ID=g24
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	76872	77297	0.77	-	.	ID=g24.t1;Parent=g24
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	76872	76874	.	-	0	Parent=g24.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	76872	77297	0.77	-	0	ID=g24.t1.cds;Parent=g24.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	77295	77297	.	-	0	Parent=g24.t1
# protein sequence = [MANRMHRQGLDGRSRKNLAFLTSEFGSPKKWCALAHENHRNEGYARFEGRFGHHGLSDPFGSVKRAPKRAYPSFRRFS
# CVIANFFLGDPDSDVKNTKCFLWTSVKTFSMHTVVHHGLSDPFGRSNEPRSEHTPHFDDFRVL]
# end gene g24
###
# start gene g25
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	83971	97570	0.06	-	.	ID=g25
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	83971	97570	0.06	-	.	ID=g25.t1;Parent=g25
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	83971	83973	.	-	0	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	84061	84150	0.98	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	84235	87456	0.38	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	87514	87619	1	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	87749	90544	0.91	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	90632	90714	0.94	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	90763	91399	0.34	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	91509	91864	0.85	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	92007	92253	0.78	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	92406	96902	0.71	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	97157	97495	0.95	-	.	Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	83971	84060	1	-	0	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	84151	84234	0.54	-	0	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	87457	87513	1	-	0	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	87620	87748	1	-	0	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	90545	90631	1	-	0	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	90715	90762	0.91	-	0	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	91400	91508	0.58	-	1	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	91865	92006	1	-	2	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	92254	92405	0.77	-	1	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	96903	97156	0.99	-	0	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	97496	97570	0.97	-	0	ID=g25.t1.cds;Parent=g25.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	97568	97570	.	-	0	Parent=g25.t1
# protein sequence = [MHTDSNSGVPGTPSGRIRRRRGSNEVPPEVVKANGNHLLVNDRSKYKSMLIRAYSSVWMIGGFAFIIYMGHLYIWAMV
# VVIQIFMAKELFNLLRRAHEDRHLPGFRLLNWHFFFTAMLFVYGRMLSQRLVNTVTLDKFLYKLVGRFVKYHMVTCYFFYIAGFMWFILTLKKKMYKY
# QFSQYAWTHMILIVVFTQSAFTVANIFEGIFCLGGQSYLVPAGGGSGRYPGELVEVCEIWPDTAVIKKLANMFGHFQWLTCPRKDLSTGWLDCDPGPL
# FKPEYFTLPEWFPAWFLSREIAVLPVQWHALLLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGMTDRMDCQMVMAVFAYIYHQSFIVPQNLS
# IEMILDQIILNLTFEEQLAVYKKLGQIIQERTFGES]
# end gene g25
###
# start gene g26
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	105025	107205	0.38	+	.	ID=g26
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	105025	107205	0.38	+	.	ID=g26.t1;Parent=g26
C03HBa0203C09.1	AUGUSTUS_ab_initio	start_codon	105025	105027	.	+	0	Parent=g26.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	intron	105955	106665	1	+	.	Parent=g26.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	105025	105954	0.38	+	0	ID=g26.t1.cds;Parent=g26.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	106666	107205	1	+	0	ID=g26.t1.cds;Parent=g26.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	107203	107205	.	+	0	Parent=g26.t1
# protein sequence = [MWYHVAKPSEFLVITGRGIDELKIAKKALVLPFQKCTRINVSPLNYTFEVNAMSAEKLCFLLPAVFTIGPRADDHNSL
# VKYARLLSHYQRDSHDLKELVQGIIEGETRVLAASMSMEDVFKGTKDFKREVFGKVQVELNQFGLLIYNANIKQLVDVRGHEYFSYLGQKTQMEAANR
# AKVDVAEAKMKGNVGAKQSEGFTIQSAAKIDVETKVVTTQRQGQGKMEEIKVGSEVKIFEIQQEAEVSEANAKLATKKAAWSQQAKMAEVESDKAVAI
# REAELQQKVEQTNALTKTENFKAQFLSRANVEYHIKVQEVNGEYYQKQKAADAILYEKEKLAEARRVESDAESYAKKQAADVALYTKTKEAEGLLALA
# EAQGIYIRTLLSALGGNYSALRDYLMINKGVYKDVAKFNADAIRGLQPKINIWSNGASEEKMSDGMSARKGNGAMKEMSELYRVIPHLLQTVNEQTRM
# LPPPWLSTCSTNKATPSET]
# end gene g26
###
# start gene g27
C03HBa0203C09.1	AUGUSTUS_ab_initio	gene	112240	112639	0.6	-	.	ID=g27
C03HBa0203C09.1	AUGUSTUS_ab_initio	transcript	112240	112639	0.6	-	.	ID=g27.t1;Parent=g27
C03HBa0203C09.1	AUGUSTUS_ab_initio	stop_codon	112240	112242	.	-	0	Parent=g27.t1
C03HBa0203C09.1	AUGUSTUS_ab_initio	CDS	112240	112639	0.6	-	1	ID=g27.t1.cds;Parent=g27.t1
# protein sequence = [SFQSFSSGLQHLNQGFAFPGDIGTPVDLGPSSSSCRFERSRSYHDVFQHNYSGGLFDSASDMIMQTDPRLNSGHHHMD
# GLVPNQWQMMGSDPSFLGMRNGTIDGGHQYPLPDYPNLACGVNGYGVFRPSNGL]
# end gene g27
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C03HBa0203C09-Bdfpd/AUGUSTUS_ab_initio/seq_with_defline_removed