##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C03HBa0114P24-gYLQb/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 122908, name = C03HBa0114P24.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	140	1258	0.63	-	.	ID=g1
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	140	1258	0.63	-	.	ID=g1.t1;Parent=g1
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	140	142	.	-	0	Parent=g1.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	905	1006	1	-	.	Parent=g1.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	140	904	0.63	-	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	1007	1258	1	-	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	1256	1258	.	-	0	Parent=g1.t1
# protein sequence = [MTPQPIDRNKGETTAGETPRSVPTPFLTKTYQLIEDQSIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFV
# RQLNTYGFRKVVPDRWEFANDSFRRGERSQLVDIQRRKVATPIATPSAAATAVAIVASPPQPPPPPPSPSPPPPPPAQPPVAVSTSDSCEEQVLSSNS
# SAGSTAELLGENERLRLENLQLSKELNQMKKLCGNIYGMMSTYAHPSSSGNQSAESSSPSLKPLDLLGTERSVGESQVKAVEDRESHEVPEEAQARLF
# GFSIGMKRVREGEQAMMEHCHDLRLRQPGTTDVKVEPSDQESNGESEERSWLLHCGGRNQRTCN]
# end gene g1
###
# start gene g2
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	9871	11247	0.64	-	.	ID=g2
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	9871	11247	0.64	-	.	ID=g2.t1;Parent=g2
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	9871	9873	.	-	0	Parent=g2.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	9871	11247	0.64	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	11245	11247	.	-	0	Parent=g2.t1
# protein sequence = [MPNSSSLLLILSGNLFLQAALALSLTFLLHFIKIPALLLSGLFTYVHPDDVAPNNASSNGVRAAIRRPGTNDSDLKPR
# KKSKERFEFDENKAQIFRLKLSDGHLHTRIYFEDFRSVFNSILVYLSCLLLHRFLPKSEESGVWKSGSFVPILFGFLGVGRIFILIFRVSFERSASKL
# SERHLSILLGFLGFIVSLGIVHGAVPKWVFDVHFEALHGFEKLFFAIFMGCVSCFLYMPAVRIAHAFWLGTDQLRCNLPIVSCGWFARLLLHANYLVM
# VLTSMLWVKPFTDLLLIDQNKGAHQNSRIENATKLVGNVGMKKSEFDSFRLWCLVVSGLLQIVSLRSNVQMYLNEAVLCWYQRLHASKVPDLAYSRAK
# VFLHNHFVCLVVLQFFLPASMVLIFLGLSQLGGDLLTNYEGVCSVLPCSLLDKEVALFMAWWVLFVWTIYSSVTLALFRQGILCVS]
# end gene g2
###
# start gene g3
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	23312	23923	1	-	.	ID=g3
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	23312	23923	1	-	.	ID=g3.t1;Parent=g3
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	23312	23314	.	-	0	Parent=g3.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	23312	23923	1	-	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	23921	23923	.	-	0	Parent=g3.t1
# protein sequence = [MAESNPREESALLASKICDQISSVFSTNSPNPAALDVLVQEIADAANRNGRVFVYGVGREGLMLKALSMRLFHLGLSS
# HCVFDMNTPPIGPSDLLIASAGPGGFSTVDAISGVAKSSGARVLLLTAQPHSGSSMKYASVVAYIPAQTMADDDAGDGEKERPLLPMGSVYEGAMFVL
# FEMVVFKLGEILKQSPEAVRARHTNLE]
# end gene g3
###
# start gene g4
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	24375	25482	0.26	-	.	ID=g4
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	24375	25482	0.26	-	.	ID=g4.t1;Parent=g4
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	24375	24377	.	-	0	Parent=g4.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	24590	24837	0.64	-	.	Parent=g4.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	24940	25256	0.56	-	.	Parent=g4.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	24375	24589	1	-	2	ID=g4.t1.cds;Parent=g4.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	24838	24939	0.64	-	2	ID=g4.t1.cds;Parent=g4.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	25257	25482	0.41	-	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	25480	25482	.	-	0	Parent=g4.t1
# protein sequence = [MQVHFFLLTFPDFVDVIGSLSPKRGSFEEGNGDAVHAEAIRSALNEMASSSKNKFRRSGWTSSEDETDVMDQDDADLG
# LAWVRESQEGGTGSHRRLSWLALQPKEIVSSNSGSRKVKNFKDHRRAHYDEYRRVKELRKKGEEASDDEDLVGNDGRSDSSSSLSAAVKDIEIKEGSM
# DTSK]
# end gene g4
###
# start gene g5
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	31424	37096	0.17	-	.	ID=g5
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	31424	37096	0.17	-	.	ID=g5.t1;Parent=g5
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	31424	31426	.	-	0	Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	32587	32912	0.86	-	.	Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	33042	33102	0.61	-	.	Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	33173	33265	0.36	-	.	Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	33324	33708	0.4	-	.	Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	33897	34072	0.94	-	.	Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	34169	34306	0.8	-	.	Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	34439	37012	0.56	-	.	Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	31424	32586	0.91	-	2	ID=g5.t1.cds;Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	32913	33041	0.59	-	2	ID=g5.t1.cds;Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	33103	33172	0.75	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	33266	33323	0.44	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	33709	33896	0.4	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	34073	34168	0.94	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	34307	34438	0.8	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	37013	37096	0.58	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	37094	37096	.	-	0	Parent=g5.t1
# protein sequence = [MGKKRGLPNWVPDGWKVEVRTRKGKKEKWYIDPSKGLKFCSKADVLHYLSSVDSNCSKSSNTKEMENKGTNKCFIEKT
# ASEGLPPGWIKELKVRKKGRKIRKDPYYIDPVSGQTFRSLKQVSRFLETREPGRFESKPDDKCPDTLELEEPSSLVSANVFRMFILIYGSVASSGLLS
# FIKLAEIRLLGTLPHIKLIRKTSNHLAMLHVLHADEQISLDCDASCKEVNSNQKLKLGAEHMAHSSCVEGSMSSCEGLGDAVAENAAEEKIDKVVSDP
# AIEEHREKDDDGEVVSNTVSGGHQEKEDIGKVILATASGEHQEEDDDGKVISATASGEHQEKEDDGKVVSKTVNGENQDKPSLDGVEKHDQKTFQRKR
# KKGMNMPSRASKRLAGIKADTSLKLQTNDQTQLTSVRQQEGTQAATSDNPLNFTNTSKHVASTVTGITINKKVETGNLTIKRKQHLVTSPQTEGEKKP
# SPAEPAKTVLASCDVDKKGETALESSLSDLWTDPCIEFAIKTLTGTIPVINEKKLDEIPGSSSSKPSVNTPSSVGLPSDEIWADPCFMFAVKTLTGEI
# PIGDELCSQKIVQQQCTSSPNIRFEEFGQANLPRYAAPEMSSYKQQPAVAPNAYQNRWFAKFGSHRPSPLC]
# end gene g5
###
# start gene g6
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	43926	44692	0.32	-	.	ID=g6
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	43926	44692	0.32	-	.	ID=g6.t1;Parent=g6
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	43926	43928	.	-	0	Parent=g6.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	44066	44360	0.38	-	.	Parent=g6.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	44407	44668	0.34	-	.	Parent=g6.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	43926	44065	0.67	-	2	ID=g6.t1.cds;Parent=g6.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	44361	44406	0.38	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	44669	44692	0.33	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	44690	44692	.	-	0	Parent=g6.t1
# protein sequence = [MACRSASTHVLNEIVEVCGLNSRAFRYADCRHLTAAYQSVKLRGSKKFVSVHAGAADHLVPGGPNPLHN]
# end gene g6
###
# start gene g7
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	45248	47603	0.69	-	.	ID=g7
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	45248	47603	0.69	-	.	ID=g7.t1;Parent=g7
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	45248	45250	.	-	0	Parent=g7.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	45624	47295	0.77	-	.	Parent=g7.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	45248	45623	0.88	-	1	ID=g7.t1.cds;Parent=g7.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	47296	47603	1	-	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	47601	47603	.	-	0	Parent=g7.t1
# protein sequence = [MAVELWETLKDSITAYTGLAPTTFFTLVALALAFYYVVSELFGSPDNRHQQRPRDFEEQKPLPPPVQLGEISGEELKQ
# YDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGTVKQTVPVSDGA
# ANDESVESTDPETKPAEAVASESAKPSEDGPSGSSVAEIVDKSDGDVDKKD]
# end gene g7
###
# start gene g8
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	56045	57184	0.38	-	.	ID=g8
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	56045	57184	0.38	-	.	ID=g8.t1;Parent=g8
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	56045	56047	.	-	0	Parent=g8.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	56601	56783	0.96	-	.	Parent=g8.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	56045	56600	0.99	-	1	ID=g8.t1.cds;Parent=g8.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	56784	57184	0.38	-	0	ID=g8.t1.cds;Parent=g8.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	57182	57184	.	-	0	Parent=g8.t1
# protein sequence = [MMSFQKQEKIEAVVMEERNSPVRRWEDLNIDMLVNIFQSFDLFQLISVIPQVCPAWQLACSDQRLWKTLDLSVMQSNF
# IKTQAPPYVFVDTPSREKLTRILKICLNLSRGNLLTLIFHYNLYVDNNQLTYTAKRCPRLKRLVMPAWEKLEKRTICSAFQEWKDLESLTMPSLEEPA
# YVIEKIGRSCKKISELKIMDPCDVLLASALVAFLPNLKVLSVRCTELPKYALVILLEGLKKLKVLNISHCIITEDLPPPAPMKILTELDESILKKASR
# LDKFLTCMSGSCIMCQRTRNDEGSMRWYKYADLWKVDEVTSLAI]
# end gene g8
###
# start gene g9
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	72934	73161	0.23	-	.	ID=g9
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	72934	73161	0.23	-	.	ID=g9.t1;Parent=g9
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	72934	72936	.	-	0	Parent=g9.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	72934	73161	0.23	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	73159	73161	.	-	0	Parent=g9.t1
# protein sequence = [MSSSTNKSGHHNFTEQEEILWDILLLNQNLSHLEEEIAYLKDKILRLSGRIDVLATKLNGGVDDGGVFVGQGVGE]
# end gene g9
###
# start gene g10
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	77167	78298	0.35	-	.	ID=g10
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	77167	78298	0.35	-	.	ID=g10.t1;Parent=g10
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	77167	77169	.	-	0	Parent=g10.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	77219	77305	0.85	-	.	Parent=g10.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	77723	77900	0.75	-	.	Parent=g10.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	77167	77218	0.46	-	1	ID=g10.t1.cds;Parent=g10.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	77306	77722	0.73	-	1	ID=g10.t1.cds;Parent=g10.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	77901	78298	0.9	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	78296	78298	.	-	0	Parent=g10.t1
# protein sequence = [MEFQKNGKTEAADMGKGDSPVRRWEDLDINILVMILLYLDIFQLTSVIPQVCRAWRLACCDPLLWITLDLSVLQSNFI
# RLQVKPYVYVDSPSEEKLTGLLNNCLNLSRGNIQTLIFHPNLYVNDNQLTTAAERCPRLKRLVMPSWDKIKKRTMCRAIHIWNDLESLTMPSIKNPAR
# VIEEIGRSCQKFVALKIMEPCDMLFASSLASFLPNLEVLSVRCTVLSKPALAIILEKLKKLKVLNISHCAITEDSPLEPMRILTKLDKSILEKASRYE
# EDLWKVDEVKSLAV]
# end gene g10
###
# start gene g11
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	81238	84106	0.35	+	.	ID=g11
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	81238	84106	0.35	+	.	ID=g11.t1;Parent=g11
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	81238	81240	.	+	0	Parent=g11.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	81333	83898	0.35	+	.	Parent=g11.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	81238	81332	0.35	+	0	ID=g11.t1.cds;Parent=g11.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	83899	84106	0.37	+	1	ID=g11.t1.cds;Parent=g11.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	84104	84106	.	+	0	Parent=g11.t1
# protein sequence = [MVSGIYNLGRNLKSFRYRQAAITHICCPLANKNLFKLKWWLHPFLEVSGGEHDLANQKTPRQHTVEEITGERTVIESF
# TVCHSSTAIVLQLGKKRRRRPQ]
# end gene g11
###
# start gene g12
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	94985	96089	0.54	-	.	ID=g12
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	94985	96089	0.54	-	.	ID=g12.t1;Parent=g12
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	94985	94987	.	-	0	Parent=g12.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	95538	95730	1	-	.	Parent=g12.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	94985	95537	0.54	-	1	ID=g12.t1.cds;Parent=g12.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	95731	96089	0.99	-	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	96087	96089	.	-	0	Parent=g12.t1
# protein sequence = [MEEGDSSVRRWEDLDIDILVKILQSFDLFELTSGLAHVCSAWRLACTDQLLWMTLDLSILKSNYIKIPLEPYVYVDCQ
# SDKTLTSLLKICLNLSRGNIRTLIFHYNLYVSDDQLTYTAERCPRLKRLVMPAWNRIKKTGICRAIHMWEDLESLTMPSIANPPYVMEEIARSCKNFA
# ELKIMGPCDMLFASTLVSFLPNLKVLSVRCTLLSKSALVTILDGLKKLEVLNISHCVITEDPPPAPKKILTKLDHSIVEKASRLHKFLTCMSDSCIMC
# QRCRNDEGLMRWYKYEELWKVDEVRSLAI]
# end gene g12
###
# start gene g13
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	103712	106248	0.1	-	.	ID=g13
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	103712	106248	0.1	-	.	ID=g13.t1;Parent=g13
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	103712	103714	.	-	0	Parent=g13.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	103938	104484	0.15	-	.	Parent=g13.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	104547	105913	0.75	-	.	Parent=g13.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	106023	106162	0.6	-	.	Parent=g13.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	103712	103937	0.15	-	1	ID=g13.t1.cds;Parent=g13.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	104485	104546	0.15	-	0	ID=g13.t1.cds;Parent=g13.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	105914	106022	0.74	-	1	ID=g13.t1.cds;Parent=g13.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	106163	106248	0.61	-	0	ID=g13.t1.cds;Parent=g13.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	106246	106248	.	-	0	Parent=g13.t1
# protein sequence = [MPTIKLNCGLGSTYGRLKSQTRWLTLVGWFELDNARENSGTAVKLAKWRIIKSEKKMEHIFILHMINLMIGEGGFRVE
# IGTLLSHXSDWRTGRDGGTDLELGRFQGDRNANEYDSGEGNCGIALPMYGPTVRPTTHTPDLSPEISTMRVVSSAGHFSVYR]
# end gene g13
###
# start gene g14
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	109792	116159	0.04	+	.	ID=g14
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	109792	116159	0.04	+	.	ID=g14.t1;Parent=g14
C03HBa0114P24.1	AUGUSTUS_ab_initio	start_codon	109792	109794	.	+	0	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	109809	110411	0.26	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	110570	110905	0.96	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	110968	111109	0.68	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	111235	111706	0.81	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	111780	112270	0.8	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	112344	112441	0.94	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	112516	112870	1	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	112931	113055	0.97	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	113222	113339	0.97	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	113440	113604	0.79	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	113688	113903	0.66	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	114005	114550	1	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	114682	115609	1	+	.	Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	109792	109808	0.25	+	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	110412	110569	0.53	+	1	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	110906	110967	0.68	+	2	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	111110	111234	1	+	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	111707	111779	0.83	+	1	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	112271	112343	0.96	+	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	112442	112515	0.97	+	2	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	112871	112930	1	+	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	113056	113221	0.97	+	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	113340	113439	0.97	+	2	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	113605	113687	0.79	+	1	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	113904	114004	0.68	+	2	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	114551	114681	1	+	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	115610	116159	0.97	+	1	ID=g14.t1.cds;Parent=g14.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	116157	116159	.	+	0	Parent=g14.t1
# protein sequence = [MVAGERNKRVCIDLSCWIVQLQNVNKSHCAMKEKLYLRGLFHRVRALIALNCSVIFVTDGAIPAIKSSTYRRRLNLGN
# VLTQDEAAIKPSSIRRNTGSDFSRMMKEAKVLGNALGIPCLDGGSVLFMKHVILESGSFYSFSGVQFDGCFTSDSDAFLFGARTVYRDMCLGDGGYLV
# CYEMDDIERKLGLGRNSLIALAVILGGDYSEGVYGIGRESACQIVKSIGDRAVLQWIASEGFSLVKKKKGSKKQTEDDKCNGKENAAEHKNPDGSKYP
# AQMKSQVLQVLDAYLRPKCHSADSNSVQRILALYPYSRSQLQHICSETFGWPPEKTDEYILPKIAERELRRFANLRSTASQLGVQLPLNEMPIKCPLS
# QIVKPRKVQGVDCFEVSWEEMDGLETSIVPADLVERACPERILEFQERRAQGKKRNNARSRPRKPENPQLLGQIDQKLQDLLLEIDRETSTTNDATSL
# CRSVPEDDDDIAHIQVVDTGKQSHYTWNSNCVKKGGDFTYGITSFQESNISQVSSEDEVIDLTSPPPLQHASGNSKHLEGNVQCIDLVELSDSDNDMF
# SPEHTRRARELRMFIARIKNTC]
# end gene g14
###
# start gene g15
C03HBa0114P24.1	AUGUSTUS_ab_initio	gene	118869	121267	0.1	-	.	ID=g15
C03HBa0114P24.1	AUGUSTUS_ab_initio	transcript	118869	121267	0.1	-	.	ID=g15.t1;Parent=g15
C03HBa0114P24.1	AUGUSTUS_ab_initio	stop_codon	118869	118871	.	-	0	Parent=g15.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	119193	119441	0.91	-	.	Parent=g15.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	119934	121117	0.51	-	.	Parent=g15.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	intron	121268	122908	0.76	-	.	Parent=g15.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	118869	119192	0.2	-	0	ID=g15.t1.cds;Parent=g15.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	119442	119933	0.6	-	0	ID=g15.t1.cds;Parent=g15.t1
C03HBa0114P24.1	AUGUSTUS_ab_initio	CDS	121118	121267	0.88	-	0	ID=g15.t1.cds;Parent=g15.t1
# protein sequence = [VLEAVLQDNFVPNDTDLHAEREYCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPAISAKLHVLDGIYTRMGASDSI
# QQGRSTFLEELSEASDILRKCSANSLVILDELGRGTSTHDGVAIAYATLQYLLEHKKCMVLFVTHYPEIVSIKNKFPGSVGPYHVSYLTSQRDVNGDF
# KSNEKMDHINGEDITYLYKLAPGVSGRSFGFKVAQLAQLPVTCIQQAIVIAAKLEAAVCNYTEQQFRRSCSLSHRQDGCKNEPTEDVLESDSLSAGIV
# EGLDDISELYRELFMNLNYAYLEEHGNDRRLQFLMQARSLAAQLISR]
# end gene g15
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C03HBa0114P24-gYLQb/AUGUSTUS_ab_initio/seq_with_defline_removed