##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C03HBa0034A02-lvvva/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 143702, name = C03HBa0034A02.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	27	2157	0.65	-	.	ID=g1
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	27	2157	0.65	-	.	ID=g1.t1;Parent=g1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	1	26	0.95	-	.	Parent=g1.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	128	1556	0.74	-	.	Parent=g1.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	1641	1750	0.85	-	.	Parent=g1.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	1906	1995	0.96	-	.	Parent=g1.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	27	127	0.91	-	1	ID=g1.t1.cds;Parent=g1.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	1557	1640	0.71	-	1	ID=g1.t1.cds;Parent=g1.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	1751	1905	0.97	-	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	1996	2157	0.93	-	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	2155	2157	.	-	0	Parent=g1.t1
# protein sequence = [MEKEILDYVLVPLGLLIMAAYHLWLLQRILKHPTHTVIGINSINRRLWVLAMMEESPQNGVLAVQTLRNNIMASTLLA
# STAIMLSSLIAVLMTGGSSGRSVSFHVQYYSHASILINVPYKKLDSSNSKHCVTVEWREAVSNASQIPKGTFSLQDGDNEKPTWRRHLS]
# end gene g1
###
# start gene g2
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	5338	5688	0.77	-	.	ID=g2
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	5338	5688	0.77	-	.	ID=g2.t1;Parent=g2
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	5338	5340	.	-	0	Parent=g2.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	5338	5688	0.77	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	5686	5688	.	-	0	Parent=g2.t1
# protein sequence = [MNESSSSLRITRGIPLHVNVVDILPSFSMGLTQDFGFDVGSLGKSNQVIQEQTMEELRSKEKNDPTAVQQAINNAKAR
# GIKIVQGRRKRKAVNIESEENASEVVRSEEHNIYEVLY]
# end gene g2
###
# start gene g3
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	6636	7432	0.9	-	.	ID=g3
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	6636	7432	0.9	-	.	ID=g3.t1;Parent=g3
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	6636	6638	.	-	0	Parent=g3.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	7176	7270	1	-	.	Parent=g3.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	6636	7175	0.9	-	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	7271	7432	1	-	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	7430	7432	.	-	0	Parent=g3.t1
# protein sequence = [MEKQVLDYVLVPVGLLLMLAYHLWLLHRILKHPSHTVIGINSINRQFWIRAMMEDPSKNGVLAVQTLRNNIMASTLLA
# STAIMLSSLIGVLMSSGSRGGGSISSHIYGNRTEFCLSIKFFSILVCFMVAFLFNVQSIRYYSHASILINVPYKKLDSSNSRHCVTAEYVGRIVNRGS
# YFWSLGLRAFYFSFPLFLWIFGPIPMFLSSVFLVFMLYFLDVSSDFGWVTPTDEETA]
# end gene g3
###
# start gene g4
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	16967	17404	0.96	+	.	ID=g4
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	16967	17404	0.96	+	.	ID=g4.t1;Parent=g4
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	16967	16969	.	+	0	Parent=g4.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	16967	17404	0.96	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	17402	17404	.	+	0	Parent=g4.t1
# protein sequence = [MEVLGKSMVAVPTNVIYLSTILGQDGPNPVHKCDWKCENEHVCGNMFRCRLTGLTHICDKNCNQRILYDNHNSLCRVS
# RQIFPLTQVEVQAVKGVRRKFDADSSPSDSCAFKRRRDAHFHPSPFERSFTAVSPICSQVGEGMDLN]
# end gene g4
###
# start gene g5
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	21803	22984	0.97	+	.	ID=g5
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	21803	22984	0.97	+	.	ID=g5.t1;Parent=g5
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	21803	21805	.	+	0	Parent=g5.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	22290	22487	1	+	.	Parent=g5.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	22750	22839	0.99	+	.	Parent=g5.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	21803	22289	1	+	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	22488	22749	0.99	+	2	ID=g5.t1.cds;Parent=g5.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	22840	22984	0.97	+	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	22982	22984	.	+	0	Parent=g5.t1
# protein sequence = [MLTITSWKELSITLLFCVLISHSFASTFTITNNCPYTIWPGTLSGSSSPQLSTTGFQLNAGQSVRIPSVAGWSGRIWA
# RTGCIFDESGVGSCQTGDCGGKLECDGLGATPPASLFEITLGTGDTKDFYDVSIVDGYNLPMVATPQGVPGGCNATGCVSNLNMGCPKELQVVGGDGG
# GNVVACKSACEAFGLDQYCCAGEFANPTTCRPSFYSSVFKRACPRAYSYAYDDGTSTFTCKASDYAIIFCPMNGVKRPNGGETTPPIEESRMEKFPAM
# VSSSNILLPFPMLIGLLFQFISL]
# end gene g5
###
# start gene g6
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	23530	30626	0.14	-	.	ID=g6
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	23530	30626	0.14	-	.	ID=g6.t1;Parent=g6
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	23530	23532	.	-	0	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	23626	23706	1	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	23844	23977	0.86	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	24054	24504	0.57	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	24532	24643	0.52	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	24691	25001	0.84	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	25120	25755	0.9	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	25810	25889	0.98	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	25946	26470	0.95	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	26694	29125	0.6	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	29188	29288	0.94	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	29548	30318	0.61	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	30424	30578	0.62	-	.	Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	23530	23625	0.98	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	23707	23843	0.87	-	2	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	23978	24053	0.96	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	24505	24531	0.58	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	24644	24690	0.84	-	2	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	25002	25119	0.99	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	25756	25809	0.98	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	25890	25945	0.94	-	2	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	26471	26693	1	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	29126	29187	0.94	-	2	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	29289	29547	1	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	30319	30423	0.61	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	30579	30626	0.99	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	30624	30626	.	-	0	Parent=g6.t1
# protein sequence = [MADSREESPDWLRSFQLRDSNFDQFNFLFTVLRGGGRFKYMYIVLEHIWVRAPAAIILSSGSESPVNNNHLSDDEDSI
# NLSKLFQKDKTSLSEEKCSQDGHGSQLKKTSEVNSPIKNEEVDRTPTRKRKNENQSEKKGKGTDKALTKRRALEKPFTDKEPSHSVCTLSSDSESPHD
# GSSMKVEEVLDEELLMHDVKATKKEENDVTSKKKSPKKKMKEEQEKKMKLENQLNEGVENEATEENIPEKQSGTNLSSSRLPLVLPEKVQRTKALVEC
# EGDSIDLSGDVGAVGRIIVSDGPSGNHEMLLDLKGTIYKTTILPSRTFCVVSFGPSEAKVEAIMNDFIQLKSQSNVYDAEHMVEGTLDGFTFDSDEEA
# ENLTQPASQGDQNENVDHQTNGNVKAKAKKASAMEQKKGKKGAKIPKKVKKKPQVQKKSKSKK]
# end gene g6
###
# start gene g7
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	34741	38112	0.43	+	.	ID=g7
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	34741	38112	0.43	+	.	ID=g7.t1;Parent=g7
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	34741	34743	.	+	0	Parent=g7.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	35038	35395	1	+	.	Parent=g7.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	35512	36222	0.99	+	.	Parent=g7.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	36350	37938	0.63	+	.	Parent=g7.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	34741	35037	0.88	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	35396	35511	1	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	36223	36349	0.86	+	1	ID=g7.t1.cds;Parent=g7.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	37939	38112	0.5	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	38110	38112	.	+	0	Parent=g7.t1
# protein sequence = [MGEGKQGAMVVEMPNSSNQNPIVQLQNKFKELEIGFKGWLSKQSIPVEAAVVTATSGLQGAAIGGFMGTLTQDVSSSM
# PIPPAGANLNPQAMASFQQAQALAGGPLVQARNFAVMTGVNAGISCVLKRIRGKEDVQSSMAAAFGSGALFSLVSGMGGPNPVPNALTSGIFFALVQG
# GLFELGRKFSQPPAEDTHYVRTRSLLSSLGLQNYEKNFKKGLLTDTTLPLLTDRQDICCTI]
# end gene g7
###
# start gene g8
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	39625	40690	0.98	+	.	ID=g8
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	39625	40690	0.98	+	.	ID=g8.t1;Parent=g8
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	39625	39627	.	+	0	Parent=g8.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	39898	40105	1	+	.	Parent=g8.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	40450	40530	1	+	.	Parent=g8.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	39625	39897	1	+	0	ID=g8.t1.cds;Parent=g8.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	40106	40449	1	+	0	ID=g8.t1.cds;Parent=g8.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	40531	40690	0.98	+	1	ID=g8.t1.cds;Parent=g8.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	40688	40690	.	+	0	Parent=g8.t1
# protein sequence = [MAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQS
# EIQCAEESDEQDEVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITA
# FADEIAIDTLSIKDPNVAEDQIAYEGPDFTDLDENLQKAFHKYLEIRGIKPSTTNFLHEYMVNKDSREYKMWLKNLKKFIEA]
# end gene g8
###
# start gene g9
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	41872	48851	0.35	-	.	ID=g9
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	41872	48851	0.35	-	.	ID=g9.t1;Parent=g9
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	41872	41874	.	-	0	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	41980	42054	0.74	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	42232	42434	1	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	43035	43380	0.75	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	43936	44897	0.94	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	45120	45246	0.99	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	45313	46171	0.96	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	46277	46403	1	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	46665	48512	0.84	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	48626	48694	1	-	.	Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	41872	41979	0.63	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	42055	42231	0.81	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	42435	43034	0.75	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	43381	43935	0.98	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	44898	45119	0.98	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	45247	45312	0.99	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	46172	46276	1	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	46404	46664	0.85	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	48513	48625	1	-	2	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	48695	48851	1	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	48849	48851	.	-	0	Parent=g9.t1
# protein sequence = [MNSTDSIKTLLATTGGDTVKLFDLTLEPRDPCILSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWRKNGQSLGTV
# PLAGTDSADNIEESISTVNFSSKASRYICSGGSGQVIRIWDLQRKRCIKWLKGHTNTISGAMYNCKDEHLASISLNGNLILHNLASGAKAAELKDPNA
# QVLRVLDYSKISRHLLVTAGDDGSIHLWDTTGRSPKVSWLKQHSAPTSGISFSPTNDKIVASVGMDKKLYTFDSGSRRPTFCIPYEAPFSSLAFTDDG
# FTLAAGTSSGRVVFYDVRGKPQPLTVLRAYGNSEAVTSLCWQRAKPVIVNENNCTTEMALLGSAVEDSILMPDPLPAMMSSSLATSMTTSGSRTTVRS
# GSVDSFSFPAGITGSTSGTTGLSPSEETPIRSSLWKGGSLARLHAPRNFKDDMEVFSPLVEVQPITPSLDKLWDDQEGFKKDFDKKSSLLFPSSLRFP
# LPVEGGNENRPIFDWKSSSLPKQQEDASFAQLSSTPTSSRGDDSSSITPPEAWGGERLSDRLSHLRQSGNMPSRFAISTSGPLAPGSMLSGLQDNFPA
# TQSIGSLTSSTLSLANLRIKENPNEETILGSSEHASSTSFSVGTKGITGQGTLDTLGSTVSLPRRFSSYAERISTTPSFSDGTLSVGSPKTKKTGAET
# REELLNSLLSRSDTSSATAAGAFQAINGEIKQSQKSTLPELQQGSSFTLQLFQRTQEETLSSLQKSIHEDMRNLHLDILRQFHMQEMETSSAMKLILE
# NQAELMKEVQLLRRETQQLRQLL]
# end gene g9
###
# start gene g10
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	96933	97355	0.59	+	.	ID=g10
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	96933	97355	0.59	+	.	ID=g10.t1;Parent=g10
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	96933	96935	.	+	0	Parent=g10.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	96933	97355	0.59	+	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	97353	97355	.	+	0	Parent=g10.t1
# protein sequence = [MAVMWDVPFRCLISKDGKTEGFKIKTFINKQTCEEAFFNARADAVTLAQYFKNELQNNPKYKVKDMRGELENDLKLHV
# CQSKIKTVKRMALKKLDGSFIDDYNKLEAYAQELKQSNPESDVLINISKDALAEGKIKFLRM]
# end gene g10
###
# start gene g11
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	98966	99220	0.43	+	.	ID=g11
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	98966	99220	0.43	+	.	ID=g11.t1;Parent=g11
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	98966	98968	.	+	0	Parent=g11.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	98966	99220	0.43	+	0	ID=g11.t1.cds;Parent=g11.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	99218	99220	.	+	0	Parent=g11.t1
# protein sequence = [MANVEDEEDPPLRPMVICESELRAEKLKKRVFPTGARKIQFYGDHTGASVSINLPYSPIKTTWKGKKLSLLDMCKCKQ
# KRKDSR]
# end gene g11
###
# start gene g12
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	102627	106898	0.63	+	.	ID=g12
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	102627	106898	0.63	+	.	ID=g12.t1;Parent=g12
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	102627	102629	.	+	0	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	102957	103480	0.91	+	.	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	103620	104259	1	+	.	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	104418	105205	0.72	+	.	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	105326	105413	0.99	+	.	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	105627	105698	0.98	+	.	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	105762	105867	0.98	+	.	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	105984	106169	0.98	+	.	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	106229	106578	0.97	+	.	Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	102627	102956	0.99	+	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	103481	103619	0.99	+	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	104260	104417	0.83	+	2	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	105206	105325	0.99	+	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	105414	105626	1	+	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	105699	105761	0.98	+	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	105868	105983	1	+	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	106170	106228	0.98	+	1	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	106579	106898	0.93	+	2	ID=g12.t1.cds;Parent=g12.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	106896	106898	.	+	0	Parent=g12.t1
# protein sequence = [MSSSNVNQFSQPCIYGNVSKVPRFDFFRCLTYTLLSISLELRKKISFFDDDDIIVGFKAGYFVSSYAERKSRFMKWLT
# KIFKGNRGLPRGQQPQFLGDENMVWRAPARTLDTNAGLTMMKISKDHLITTLVRHHILHILLRMLLHMPLGNIIPEVIGYAMAAMGILALAITWGAWE
# LSFIQSAFFVVPVVTQLLNMRYILVLGLQLACAIPTNAAGLIEYRCHPFWSQKYCPSHEHDVTKRCCSCERLEPWNARYVSLGDGRSLCLECMESAIM
# DTGDCQPLYHAIRDYYEGMNMKIEQQVPMLLVERQALNEAIEGEKHGFHHMPETRGLCLSEEQTVTSILKRPRMGGREVVGIRTHPQKLTRKCEVTAI
# LVLFGLPRLLTGAILAHELMHAWLRLKGYRNLSLEVEEGICQVLSYMWLESEVMPGSRDMPSTSTASSSSMSSTKKGVKSGVENKLGEFFMHQIAHDT
# SPAYGGGFRSANEAVNKYGLRCTLDHIRLTGSFPL]
# end gene g12
###
# start gene g13
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	107570	108323	0.95	-	.	ID=g13
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	107570	108323	0.95	-	.	ID=g13.t1;Parent=g13
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	107570	107572	.	-	0	Parent=g13.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	108050	108158	1	-	.	Parent=g13.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	107570	108049	0.95	-	0	ID=g13.t1.cds;Parent=g13.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	108159	108323	1	-	0	ID=g13.t1.cds;Parent=g13.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	108321	108323	.	-	0	Parent=g13.t1
# protein sequence = [MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT
# SAYYRGAVGALLVYDITKRQTFENVHRWLRELRDHADSNIVIMMAGNKSDLNHLRAIPDHDARLLAEKEGLSFLETSALEALNVEKAFQTILLDIYQI
# ISRKALAAQEAGATPGQGTVIKVGDNSGNSNTRPCCSN]
# end gene g13
###
# start gene g14
C03HBa0034A02.1	AUGUSTUS_ab_initio	gene	115020	115599	0.93	+	.	ID=g14
C03HBa0034A02.1	AUGUSTUS_ab_initio	transcript	115020	115599	0.93	+	.	ID=g14.t1;Parent=g14
C03HBa0034A02.1	AUGUSTUS_ab_initio	start_codon	115020	115022	.	+	0	Parent=g14.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	intron	115030	115156	0.93	+	.	Parent=g14.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	115020	115029	0.93	+	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	CDS	115157	115599	0.95	+	2	ID=g14.t1.cds;Parent=g14.t1
C03HBa0034A02.1	AUGUSTUS_ab_initio	stop_codon	115597	115599	.	+	0	Parent=g14.t1
# protein sequence = [MKYAFGRNVGVALRVVVVVVVGFFLKSSRRAAVHAELQIFPELLAGGKRWSLLLVPAVCCWSRWCRSCSSLGCCCLQK
# KKEKRRGARGRRAKGGGEMERGRGVSLGCFCIGEWRGERREWRLRRRGEEEERAMGERAGCHQHVVASPARK]
# end gene g14
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C03HBa0034A02-lvvva/AUGUSTUS_ab_initio/seq_with_defline_removed