##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C03HBa0025K18-AirCu/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 112210, name = C03HBa0025K18.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	32472	39451	0.33	+	.	ID=g1
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	32472	39451	0.33	+	.	ID=g1.t1;Parent=g1
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	32472	32474	.	+	0	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	32629	32697	1	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	32811	34658	0.77	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	34920	35046	1	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	35152	36010	0.99	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	36077	36203	1	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	36426	37387	0.94	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	37943	38288	0.72	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	38889	39091	1	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	39269	39343	0.83	+	.	Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	32472	32628	1	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	32698	32810	1	+	2	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	34659	34919	0.78	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	35047	35151	1	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	36011	36076	1	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	36204	36425	0.99	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	37388	37942	0.95	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	38289	38888	0.72	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	39092	39268	0.89	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	39344	39451	0.7	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	39449	39451	.	+	0	Parent=g1.t1
# protein sequence = [MNSTDSIKTLLATTGGDTVKLFDLTLEPRDPCILSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWRKNGQSLGTV
# PLAGTDSADNIEESISTVNFSSKASRYICSGGSGQVIRIWDLQRKRCIKWLKGHTNTISGAMYNCKDEHLASISLNGNLILHNLASGAKAAELKDPNA
# QVLRVLDYSKISRHLLVTAGDDGSIHLWDTTGRSPKVSWLKQHSAPTSGISFSPTNDKIVASVGMDKKLYTFDSGSRRPTFCIPYEAPFSSLAFTDDG
# FTLAAGTSSGRVVFYDVRGKPQPLTVLRAYGNSEAVTSLCWQRAKPVIVNENNCTTEMALLGSAVEDSILMPDPLPAMMSSSLATSMTTSGSRTTVRS
# GSVDSFSFPAGITGSTSGTTGLSPSEETPIRSSLWKGGSLARLHAPRNFKDDMEVFSPLVEVQPITPSLDKLWDDQEGFKKDFDKKSSLLFPSSLRFP
# LPVEGGNENRPIFDWKSSSLPKQQEDASFAQLSSTPTSSRGDDSSSITPPEAWGGERLSDRLSHLRQSGNMPSRFAISTSGPLAPGSMLSGLQDNFPA
# TQSIGSLTSSTLSLANLRIKENPNEETILGSSEHASSTSFSVGTKGITGQGTLDTLGSTVSLPRRFSSYAERISTTPSFSDGTLSVGSPKTKKTGAET
# REELLNSLLSRSDTSSATAAGAFQAINGEIKQSQKSTLPELQQGSSFTLQLFQRTQEETLSSLQKSIHEDMRNLHLDILRQFHMQEMETSSAMKLILE
# NQAELMKEVQLLRRETQQLRQLL]
# end gene g1
###
# start gene g2
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	40633	41698	0.98	-	.	ID=g2
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	40633	41698	0.98	-	.	ID=g2.t1;Parent=g2
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	40633	40635	.	-	0	Parent=g2.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	40793	40873	1	-	.	Parent=g2.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	41218	41425	1	-	.	Parent=g2.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	40633	40792	0.98	-	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	40874	41217	1	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	41426	41698	1	-	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	41696	41698	.	-	0	Parent=g2.t1
# protein sequence = [MAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQS
# EIQCAEESDEQDEVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITA
# FADEIAIDTLSIKDPNVAEDQIAYEGPDFTDLDENLQKAFHKYLEIRGIKPSTTNFLHEYMVNKDSREYKMWLKNLKKFIEA]
# end gene g2
###
# start gene g3
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	43211	46582	0.44	-	.	ID=g3
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	43211	46582	0.44	-	.	ID=g3.t1;Parent=g3
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	43211	43213	.	-	0	Parent=g3.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	43385	44973	0.7	-	.	Parent=g3.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	45101	45811	0.99	-	.	Parent=g3.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	45928	46285	1	-	.	Parent=g3.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	43211	43384	0.53	-	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	44974	45100	0.87	-	1	ID=g3.t1.cds;Parent=g3.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	45812	45927	1	-	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	46286	46582	0.88	-	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	46580	46582	.	-	0	Parent=g3.t1
# protein sequence = [MGEGKQGAMVVEMPNSSNQNPIVQLQNKFKELEIGFKGWLSKQSIPVEAAVVTATSGLQGAAIGGFMGTLTQDVSSSM
# PIPPAGANLNPQAMASFQQAQALAGGPLVQARNFAVMTGVNAGISCVLKRIRGKEDVQSSMAAAFGSGALFSLVSGMGGPNPVPNALTSGIFFALVQG
# GLFELGRKFSQPPAEDTHYVRTRSLLSSLGLQNYEKNFKKGLLTDTTLPLLTDRQDICCTI]
# end gene g3
###
# start gene g4
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	50696	57791	0.07	+	.	ID=g4
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	50696	57791	0.07	+	.	ID=g4.t1;Parent=g4
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	50696	50698	.	+	0	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	50744	50898	0.53	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	51004	51774	0.52	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	52034	52134	0.91	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	52197	54627	0.55	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	54851	55375	0.93	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	55432	55511	1	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	55566	56201	0.86	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	56320	56630	0.78	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	56678	56789	0.43	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	56817	57267	0.49	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	57344	57477	0.84	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	57615	57695	0.99	+	.	Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	50696	50743	0.98	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	50899	51003	0.52	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	51775	52033	0.97	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	52135	52196	0.92	+	2	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	54628	54850	1	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	55376	55431	0.94	+	2	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	55512	55565	0.98	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	56202	56319	1	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	56631	56677	0.78	+	2	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	56790	56816	0.5	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	57268	57343	0.93	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	57478	57614	0.88	+	2	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	57696	57791	0.99	+	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	57789	57791	.	+	0	Parent=g4.t1
# protein sequence = [MADSREESPDWLRSFQLRDSNFDQFNFLFTVLRGGGRFKYMYIVLEHIWVRAPAAIILSSGSESPVNNNHLSDDEDSI
# NLSKLFQKDKTSLSEEKCSQDGHGSQLKKTSEVNSPIKNEEVDRTPTRKRKNENQSEKKGKGTDKALTKRRALEKPFTDKEPSHSVCTLSSDSESPHD
# GSSMKVEEVLDEELLMHDVKATKKEENDVTSKKKSPKKKMKEEQEKKMKLENQLNEGVENEATEENIPEKQSGTNLSSSRLPLVLPEKVQRTKALVEC
# EGDSIDLSGDVGAVGRIIVSDGPSGNHEMLLDLKGTIYKTTILPSRTFCVVSFGPSEAKVEAIMNDFIQLKSQSNVYDAEHMVEGTLDGFTFDSDEEA
# ENLTQPASQGDQNENVDHQTNGNVKAKAKKASAMEQKKGKKGAKIPKKVKKKPQVQKKSKSKK]
# end gene g4
###
# start gene g5
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	58337	59518	0.96	-	.	ID=g5
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	58337	59518	0.96	-	.	ID=g5.t1;Parent=g5
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	58337	58339	.	-	0	Parent=g5.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	58482	58571	0.97	-	.	Parent=g5.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	58834	59031	0.99	-	.	Parent=g5.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	58337	58481	0.97	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	58572	58833	0.96	-	2	ID=g5.t1.cds;Parent=g5.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	59032	59518	1	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	59516	59518	.	-	0	Parent=g5.t1
# protein sequence = [MLTITSWKELSITLLFCVLISHSFASTFTITNNCPYTIWPGTLSGSSSPQLSTTGFQLNAGQSVRIPSVAGWSGRIWA
# RTGCIFDESGVGSCQTGDCGGKLECDGLGATPPASLFEITLGTGDTKDFYDVSIVDGYNLPMVATPQGVPGGCNATGCVSNLNMGCPKELQVVGGDGG
# GNVVACKSACEAFGLDQYCCAGEFANPTTCRPSFYSSVFKRACPRAYSYAYDDGTSTFTCKASDYAIIFCPMNGVKRPNGGETTPPIEESRMEKFPAM
# VSSSNILLPFPMLIGLLFQFISL]
# end gene g5
###
# start gene g6
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	63917	64354	0.97	-	.	ID=g6
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	63917	64354	0.97	-	.	ID=g6.t1;Parent=g6
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	63917	63919	.	-	0	Parent=g6.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	63917	64354	0.97	-	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	64352	64354	.	-	0	Parent=g6.t1
# protein sequence = [MEVLGKSMVAVPTNVIYLSTILGQDGPNPVHKCDWKCENEHVCGNMFRCRLTGLTHICDKNCNQRILYDNHNSLCRVS
# RQIFPLTQVEVQAVKGVRRKFDADSSPSDSCAFKRRRDAHFHPSPFERSFTAVSPICSQVGEGMDLN]
# end gene g6
###
# start gene g7
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	72500	73296	0.91	+	.	ID=g7
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	72500	73296	0.91	+	.	ID=g7.t1;Parent=g7
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	72500	72502	.	+	0	Parent=g7.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	72662	72756	0.98	+	.	Parent=g7.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	72500	72661	0.98	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	72757	73296	0.91	+	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	73294	73296	.	+	0	Parent=g7.t1
# protein sequence = [MEKQVLDYVLVPVGLLLMLAYHLWLLHRILKHPSHTVIGINSINRQFWIRAMMEDPSKNGVLAVQTLRNNIMASTLLA
# STAIMLSSLIGVLMSSGSRGGGSISSHIYGNRTEFCLSIKFFSILVCFMVAFLFNVQSIRYYSHASILINVPYKKLDSSNSRHCVTAEYVGRIVNRGS
# YFWSLGLRAFYFSFPLFLWIFGPIPMFLSSVFLVFMLYFLDVSSDFGWVTPTDEETA]
# end gene g7
###
# start gene g8
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	74243	74593	0.74	+	.	ID=g8
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	74243	74593	0.74	+	.	ID=g8.t1;Parent=g8
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	74243	74245	.	+	0	Parent=g8.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	74243	74593	0.74	+	0	ID=g8.t1.cds;Parent=g8.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	74591	74593	.	+	0	Parent=g8.t1
# protein sequence = [MNESSSSLRITRGIPLHVNVVDILPSFSMGLTQDFGFDVGSLGKSNQVIQEQTMEELRSKEKNDPTAVQQAINDAKAR
# GIKIVQGRRKRKAVNIESEENASEVVRSEEHNIYEVLY]
# end gene g8
###
# start gene g9
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	77774	78588	0.87	+	.	ID=g9
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	77774	78588	0.87	+	.	ID=g9.t1;Parent=g9
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	77774	77776	.	+	0	Parent=g9.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	77936	78025	0.95	+	.	Parent=g9.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	78181	78290	0.98	+	.	Parent=g9.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	77774	77935	0.91	+	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	78026	78180	0.98	+	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	78291	78588	0.96	+	1	ID=g9.t1.cds;Parent=g9.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	78586	78588	.	+	0	Parent=g9.t1
# protein sequence = [MEKEILDYVLVPLGLLIMAAYHLWLLQRILKHPTHTVIGINSINRRLWVLAMMEESPQNGVLAVQTLRNNIMASTLLA
# STAIMLSSLIAVLMTGGSSGRSVSFHVQYYSHASILINVPYKKLDSSNSKHCVTVEYVGRTVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLCCIF
# LVVMLYFLDASSDFGWVAPADENSQQTA]
# end gene g9
###
# start gene g10
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	79901	94069	0.02	-	.	ID=g10
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	79901	94069	0.02	-	.	ID=g10.t1;Parent=g10
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	79901	79903	.	-	0	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	80059	80208	1	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	80508	81289	0.98	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	81361	82918	0.96	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	83039	83896	0.48	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	84000	84082	0.98	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	84214	86295	0.59	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	86432	87263	0.84	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	87422	87512	1	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	87597	88656	0.97	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	88900	89613	0.97	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	89674	89752	1	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	89893	90989	0.38	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	91033	91263	0.8	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	91430	92212	0.81	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	92260	92593	0.89	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	92645	92995	0.82	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	93080	93162	0.86	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	93331	93497	1	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	93624	93811	0.52	-	.	Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	79901	80058	0.43	-	2	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	80209	80507	1	-	1	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	81290	81360	0.96	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	82919	83038	0.67	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	83897	83999	0.48	-	1	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	84083	84213	0.99	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	86296	86431	0.84	-	1	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	87264	87421	0.91	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	87513	87596	1	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	88657	88899	0.99	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	89614	89673	0.97	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	89753	89892	0.6	-	2	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	90990	91032	0.8	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	91264	91429	0.81	-	1	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	92213	92259	0.9	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	92594	92644	0.97	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	92996	93079	0.85	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	93163	93330	1	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	93498	93623	0.52	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	93812	94069	0.94	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	94067	94069	.	-	0	Parent=g10.t1
# protein sequence = [MMLLSVSLLPNSSSSFATVAFAFPKVPGGFRQSIRIKVHAFLNKPLESSSDQPSVILDSLRVLEWDKLCDSVAAFAGT
# SLGKEALKEQLGYLNQTFEESLGLLEETNAAVEMNKYGAMVDFNGIDIELVKTAIRVARHGFPVSGTEALNVVALLQFVEMLQANVKAAVKQDAEWYQ
# RFMPLTEMIMELTISKSLVRFIQQLVDEDGSVKDSASSALKQSRDQVRLLERKTMDTEGHKSILSTACRGIPTLLAGCENDYAFDVSCTTLPAWTLTH
# CILLYLQLYQLMENIIRNGMEEASAVDLISERALRGYCYPVIVNFSASGTGSVLEPLSAVPLNDALQQAKASVSKAEVDVLLKITQKMQEEIDYIESI
# FSMMVRLDVINARARYGLAFGGACPDLFLQQEQDSFVATDASLDARTSVALHPTRKKWTMYLPKAYHPLLLQKHQQALQKAIKDVKNANAEIRRRKQQ
# GGNFTLRKETDLTLQSLEAKVAKLKEEPPVPVDLYVAHNTRVLVITGPNTGGKTICLKTVGLAALMAKSGQHKFAGLYVLASESVKIPWFDFVFADIG
# DEQSLSQSLSTFSGHLKQISVGAGTNPLEGAALGMSLLESFAESGTLLTIATTHHGELKTLKYSNHAFENACMEFDEMKLKPTFRILWGIPGCPCIHV
# TSTTAGRSNAINIAERLGMPDAIVHKARELYGAASAEINEVILDMERFKQNYHEQVRESQRLLKLTKGLHHKLLIARKNVKEHSINQRFRKEQEIFEA
# AAVARSSIQRRARQYRAISSQPSQKILGSNGPTSTMKTEAKEEKSKISEATPAVYYSSTSRLPLSAKRRKLPNVGDSVHVPSLNKQALVLKVDPSREE
# LLVQAGNMKLKLKLTDVLT]
# end gene g10
###
# start gene g11
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	98990	100491	0.92	+	.	ID=g11
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	98990	100491	0.92	+	.	ID=g11.t1;Parent=g11
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	98990	98992	.	+	0	Parent=g11.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	100147	100235	1	+	.	Parent=g11.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	98990	100146	0.92	+	0	ID=g11.t1.cds;Parent=g11.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	100236	100491	1	+	1	ID=g11.t1.cds;Parent=g11.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	100489	100491	.	+	0	Parent=g11.t1
# protein sequence = [MGDENGLPNSSPNHSIFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDHTASNNANTALYTAFTIFGILGGGI
# YNILGPKKTLFIGCSTYILYAGSFLYYNHHKHQVFVVVAGGLLGVGAGLLWAAQGAIMTSYPPHDRKGTYISIFWSIFNMGGVIGGLIPFVSNYNRTT
# AASVNDGTYIGFMFFMAIGTVLSLAILHPSKVIRNDGSSCTNIKYSSVSVELIQILKLFGNWKMLLMVPASWASNFFYTYQFNNVNGVLFNLRTRGLN
# NVFYWGAQMIGSVFIGSIMDYSFKSRKARGLVGIIVVGLLSTAIWGGGFAKQLTYSHDDVPHRIVLLDFKDGSKFAGPFLLYFSYGLLDAMFQSMVYW
# VIGALADDSEVLSRYTGFYKGIQSAGAAVAWQVDSHTVPFMNQLIANWALTTISFPLLVALVVLAVKDDNKDEEGATKEASITSNRDISTTVDYPNKE]
# end gene g11
###
# start gene g12
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	102519	103535	0.99	-	.	ID=g12
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	102519	103535	0.99	-	.	ID=g12.t1;Parent=g12
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	102519	102521	.	-	0	Parent=g12.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	102717	103424	1	-	.	Parent=g12.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	102519	102716	0.99	-	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	103425	103535	1	-	0	ID=g12.t1.cds;Parent=g12.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	103533	103535	.	-	0	Parent=g12.t1
# protein sequence = [MGACASRPKDLDKEFTPIPAEEVATPEKTEQETPAPEEKKDGEETKKEEPSPQAPKIEKVTAAAVTEEVKPAKEEEKA
# EEVKVEAVKEKPEEEVEETPKAVA]
# end gene g12
###
# start gene g13
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	107270	107662	0.83	+	.	ID=g13
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	107270	107662	0.83	+	.	ID=g13.t1;Parent=g13
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	107270	107272	.	+	0	Parent=g13.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	107270	107662	0.83	+	0	ID=g13.t1.cds;Parent=g13.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	107660	107662	.	+	0	Parent=g13.t1
# protein sequence = [MEFLRISAFQPIFVFLLISVIYFPVTVRSDEIIPLLLPSEQVNQDICPTTPSPSESCPINCFRPDPVCGVNGVTYWCG
# CPDAHCAGVRVVKSGICEVGNGGSAPVTGQALLLIHIVWLVLLGFVGLFGLL]
# end gene g13
###
# start gene g14
C03HBa0025K18.1	AUGUSTUS_ab_initio	gene	109906	112100	0.48	-	.	ID=g14
C03HBa0025K18.1	AUGUSTUS_ab_initio	transcript	109906	112100	0.48	-	.	ID=g14.t1;Parent=g14
C03HBa0025K18.1	AUGUSTUS_ab_initio	stop_codon	109906	109908	.	-	0	Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	110170	110267	0.98	-	.	Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	110328	110568	0.98	-	.	Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	110661	110777	0.63	-	.	Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	110839	111031	0.64	-	.	Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	111169	111792	0.93	-	.	Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	111886	111975	1	-	.	Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	intron	112034	112097	0.8	-	.	Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	109906	110169	1	-	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	110268	110327	0.98	-	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	110569	110660	0.97	-	2	ID=g14.t1.cds;Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	110778	110838	0.64	-	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	111032	111168	0.64	-	2	ID=g14.t1.cds;Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	111793	111885	0.95	-	2	ID=g14.t1.cds;Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	111976	112033	1	-	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	CDS	112098	112100	0.8	-	0	ID=g14.t1.cds;Parent=g14.t1
C03HBa0025K18.1	AUGUSTUS_ab_initio	start_codon	112098	112100	.	-	0	Parent=g14.t1
# protein sequence = [MMAINEAAKDWGLKCLRYEIRDISPPRGVRAAMEMQAEAERKKRAQVLESEGERQANINIADGRKSSVILASEAAKMD
# QVNRAQGLFTIMSLIPCTLATNNVHHGPLLHFGAFMWCRGEAEAILARAQATAKGIAMVSETLKEHGGAEAASLRIAEQYIQAFSNIAKEGTTLLLPT
# NASDPASMMSQALAVYKNVVSKNLGTQLPVTSQSKLTKNTRQSDSSAVSGDDSSLTANSADDHHLSDPIFSLQSQKKDD]
# end gene g14
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C03HBa0025K18-AirCu/AUGUSTUS_ab_initio/seq_with_defline_removed