##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C03SLm0100M07-tKPFI/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 133070, name = C03SLm0100M07.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	5430	7515	0.77	+	.	ID=g1
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	5430	7515	0.77	+	.	ID=g1.t1;Parent=g1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	5430	5432	.	+	0	Parent=g1.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	6318	6921	0.87	+	.	Parent=g1.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	5430	6317	0.83	+	0	ID=g1.t1.cds;Parent=g1.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	6922	7515	0.94	+	0	ID=g1.t1.cds;Parent=g1.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	7513	7515	.	+	0	Parent=g1.t1
# protein sequence = [MEYFLLVPLLLLTYFLHQWFFSPSNTQQRLSPPSPTKLPIIGNLHQLGSVPHRSLRKLSKKYGPVMLLQFGSKPVIVA
# SSVDAARDIMKTNDLVWSGRPKSSMTDGLFYGSKDVAFSPYGEYWRQIRSITVLHLLSNKRVQSYRRVREEEISNMIDNIRQKCDSVIDLRDVFSCLT
# NNIISRVNIGRTYNEGECGIAVKSLIEELLILIGTFNIGDYIPWLKWLNKINGLDSRVKKVAKDLDAFIESLIEERVNRNKKVECSAGEAKDFLGVLL
# EIQDGNETGFPLQRDSLKALVLDAFVAATESTYSALEWIMTELLRHPRVMKKLEEEVRELGQGITEDDLRNMQYLKAVIKESLRLHPPAPLLIPRESM
# EDVKLLDYHIPAKTQVIINAWAIGRDPLLWDDPEEYRPERFLNSDIDVKGLNFELIPFGAGRRGCPGTAFAIVVIELALARIVHKFDFALPNEEELDM
# TECNGLTVCRKSPLLAVATPWSI]
# end gene g1
###
# start gene g2
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	14401	16270	0.77	+	.	ID=g2
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	14401	16270	0.77	+	.	ID=g2.t1;Parent=g2
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	14401	14403	.	+	0	Parent=g2.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	15289	15667	0.99	+	.	Parent=g2.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	14401	15288	0.78	+	0	ID=g2.t1.cds;Parent=g2.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	15668	16270	1	+	0	ID=g2.t1.cds;Parent=g2.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	16268	16270	.	+	0	Parent=g2.t1
# protein sequence = [MEYFLLVPLLASIYFLHQLFFSPSNTQKRLLPPSPTKLPIIGNLHQLGSLPHRSLHQLSNKYGPLMLLQFGSKPVIVA
# SSVNAARDIMKTHDLVWSNRPKSSITDKLFYGSKDVAFTSYGEDWRQIKSIFMFHLLNNTRVQSYRRVREEEISNMIDKIRQQCDSVIDLRDVLSCMT
# NNIISRVTTGRTYNEGESGIAVKALLEQLLVLTGTFNIGDYIPWLKWLNKINGMDCRVKKVAKDLDAFLESVIEERVIRNKKGGCSVGEAIDFVGILL
# EIQNGKETGYTLQRDTLKALLLDAFVGGTESVYTSLEWTMTELLMHPRVVKKLEDEVRELGQGKTEITEDDLRNMHYLKAVIKESLRLHPPNPLLLPR
# ESREDVKLLDYDIPAKTQGLINAWAMGRDPLLWDDPDEYRPERFLNSDIDVKGQNFELIPFGAGRRGCPGITFAIIINELALARLVHKFNFALPKEED
# LDMTECNGLSVRRKLPLFAVATPSSS]
# end gene g2
###
# start gene g3
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	21407	23027	0.94	+	.	ID=g3
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	21407	23027	0.94	+	.	ID=g3.t1;Parent=g3
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	21407	21409	.	+	0	Parent=g3.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	22295	22409	1	+	.	Parent=g3.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	21407	22294	0.95	+	0	ID=g3.t1.cds;Parent=g3.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	22410	23027	0.99	+	0	ID=g3.t1.cds;Parent=g3.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	23025	23027	.	+	0	Parent=g3.t1
# protein sequence = [MEYFLLVPLLAFIFFLHQFFFSPSNTQKRLSPPSPTKLPIIGNLHQLGSLPHRSLHKLSQKYGPVMLLHLGSKPVLIA
# SSVDAARDIMKTHDLVWSSRPKSSMADGLFYGSKDVAFSPYGEYWRQIRSVTVLHLLSNRRVQSYRHVREEETSNMIDKIRQQCDSVIDLRDVLSCMT
# NNIISRANIGRTYNEGESGIAVKNLLEETLILAGTFNIGDYIPWLKWVNKIKGLDTRVKEVAKDLDAFLESVIEERLIGNKKAECSAGEAKDFLGVLL
# EIQDGKETGFPLQRDSLKAILLDAFVAGTDSTYTVLEWTMTELLRHPRVMKKLEDEVRELGQGKTEITEDDLGNMHYLKAVTKESLRLHAPVPLLVAR
# ESMEDVKLLDYDIPAKTQVLINAWAIGRDPLLWDHPEEYMPERFLNSDIDVKGLNFELIPFGAGRRGCPGIPFAIMVNELALANLVYKFDFALPKGIK
# GEDLDMTECNGLAVRRKSPLLVVATPSPWSS]
# end gene g3
###
# start gene g4
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	27016	28602	0.63	-	.	ID=g4
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	27016	28602	0.63	-	.	ID=g4.t1;Parent=g4
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	27016	27018	.	-	0	Parent=g4.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	27619	27708	0.94	-	.	Parent=g4.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	27016	27618	0.98	-	0	ID=g4.t1.cds;Parent=g4.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	27709	28602	0.63	-	0	ID=g4.t1.cds;Parent=g4.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	28600	28602	.	-	0	Parent=g4.t1
# protein sequence = [MDYALYSVIVPLFVFIFFLHKCFFTTSKNQNKLLPSPTKLPIIGNLHQLGSHPHRSLHELSNKYGPVMLLHFGSKPVI
# VASSVDAARDIMKTNDLVWSNRPKCKMADRLMYDSKDVAFSPYGEYWRQIRSVTVLHLLSNKRVQSYRRVREEETSNMIDKIRQQCDSVIDLRDVLSC
# MSNNIISRVALGRKYNDEQSGIDAKATLNMFVELLGTFNVGDYIPWLEWVNRITGLDTKVDKVAKDLNTFLELVIEQHIIRNEKGENRAGEAIDLADV
# LLEIQNGNETGIPLQRDSLKALILDTFSAGTDTIYTALEWTITELLMHPRAMEKLQNEVRELAQGKAEVTEDDLGNMQYLKAVIKETFRLHPPIPLLV
# PRESMEDVKLLGYHIPAKTQVIINAWAIGRDPLSWDDPEDYRPDRFLNSNIDIKGLNFEVIPFGAGRRGCPGTVFAIVAIELAVARIVHKFNLALPKE
# KELDMTECTGLTIRRKSPLLALATPCST]
# end gene g4
###
# start gene g5
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	55163	55810	0.67	-	.	ID=g5
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	55163	55810	0.67	-	.	ID=g5.t1;Parent=g5
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	55163	55165	.	-	0	Parent=g5.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	55163	55810	0.67	-	0	ID=g5.t1.cds;Parent=g5.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	55808	55810	.	-	0	Parent=g5.t1
# protein sequence = [MYLIVCLSFNAKDSFIAGVDSIYTTLEWIMIELLRNPRAMEKLQNEVRGLVQGKAEITEDDLGNMLYLKAVIKESLRL
# NPPFPIPVPRESMEDVKLLDYNIPAKTQVLVNIWAIGRDPLSWDEPEEYRPERFLNSDIDFRGLNFELIPFGAGRRGCPGIPFAIVIIELTLARLVNK
# FNFALPQGIKKEDLDMSECTGISIRRKLPLLAVATPCSV]
# end gene g5
###
# start gene g6
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	56004	56921	0.61	-	.	ID=g6
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	56004	56921	0.61	-	.	ID=g6.t1;Parent=g6
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	56004	56006	.	-	0	Parent=g6.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	56004	56921	0.61	-	0	ID=g6.t1.cds;Parent=g6.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	56919	56921	.	-	0	Parent=g6.t1
# protein sequence = [MEFPWYSVVVPLIVFLFFLHNCLFTIFNTSNKKLPPSPRKLPIIGNLYQLGLHPHRSLYKLSKKYGPVMLLHLGSKPV
# LVASSVDAARDILKTHDLVWSTRPKSSIADGLLYGSKGVAFSNYSEYWRQVRSVIVLHLLSNKRVQSFRDIREEEVSNMIDEIRKRSTSSSNSVIDMR
# DVLSCMTNNIINRVTIGRTYNEGESGRAVKALLEDLLALLGTFNIGEYIPWLKWLNKINGLDNRVKKVAKDLDAFLDSVIEERVVRNKKAENSTGEAK
# DFVDVLLEIQNGNETGFPLQRDSLKAILLVI]
# end gene g6
###
# start gene g7
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	62949	63509	0.5	-	.	ID=g7
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	62949	63509	0.5	-	.	ID=g7.t1;Parent=g7
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	62949	62951	.	-	0	Parent=g7.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	62949	63509	0.5	-	0	ID=g7.t1.cds;Parent=g7.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	63507	63509	.	-	0	Parent=g7.t1
# protein sequence = [MIELLRNPRAMEKLQNEVRGLVQGKAEITEDDLGNMQYLKAVIKETLRLNPPFPIPIPRESMEDVKLLNYDIPAKTQV
# LINVWAIGRDPLLWDEPEEYQPERFLNSDIDFRGLNFELIPFGAGRRGCPGIPFSIVIIELALARLVHKFNFTLPQGMKKEDLDMSECTGISIRRKLP
# LLAVATPCSI]
# end gene g7
###
# start gene g8
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	63779	64693	0.88	-	.	ID=g8
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	63779	64693	0.88	-	.	ID=g8.t1;Parent=g8
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	63779	63781	.	-	0	Parent=g8.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	63779	64693	0.88	-	0	ID=g8.t1.cds;Parent=g8.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	64691	64693	.	-	0	Parent=g8.t1
# protein sequence = [MEFPWYSVVVPLFVFLFFLHNCLFAIFNNNKRLPPSPRKLPIIGNLHQLGLHPHRSLHKLSEKYGPVMLLHLGSKPVV
# VASSVDAARDILKTHDLVWSTRPKSSIGDGLFYGSKGVASSNYSEYWRQVRSVMVLQLLSNKRVQSFRDIREEEVSNMIDEIRKRCTSSSNSVIDMRD
# VLSCMTSNIISRVTIGRTYNEGETGIAVKGLIEELLALFGTFNIGDYIPWLIWLNKINGLDNREKKVAKDLDAFLDSVIEERLVRNNKEKYRTGEAKD
# FVDVLLEIQNGKETGFPLQRDSLKAILLVI]
# end gene g8
###
# start gene g9
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	71508	73013	0.08	-	.	ID=g9
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	71508	73013	0.08	-	.	ID=g9.t1;Parent=g9
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	71508	71510	.	-	0	Parent=g9.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	71695	71758	0.54	-	.	Parent=g9.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	72019	72313	0.27	-	.	Parent=g9.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	72664	72724	0.31	-	.	Parent=g9.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	71508	71694	0.54	-	1	ID=g9.t1.cds;Parent=g9.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	71759	72018	0.27	-	0	ID=g9.t1.cds;Parent=g9.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	72314	72663	0.33	-	2	ID=g9.t1.cds;Parent=g9.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	72725	73013	0.32	-	0	ID=g9.t1.cds;Parent=g9.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	73011	73013	.	-	0	Parent=g9.t1
# protein sequence = [MLLYFGSKPVIVASSVDAARDIMKTHELVCSNRPKSSIAERLFYGSKDVAFSPYGEYWRQIKSVTVLHLLSNKRVQSY
# RDIREEETSNMIVKIRQEFSRVALGRKYNEGQEGINAKITLHELGELLGTFSIGDYIPWLEWINKINGLDNKVEKVAKELDTFLESVIEEHVSRRNRG
# EYSTGEAKDFVDVLLEIQNGKETGFLLQRDSLKAIILNEVRGLAQGKAEVTEDDLGYMQYLKAVIKETFRLHPPDPLLVPRESTQDIKLFGYHIPSKT
# QIIIDAWTIRRDPLSWENPHDFLPERRRCPGISFAIVVIEVALARLVHNFNFSLPTPEELDMTESNGVTIRRKSPLLALATPCSTYN]
# end gene g9
###
# start gene g10
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	77440	79821	0.94	-	.	ID=g10
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	77440	79821	0.94	-	.	ID=g10.t1;Parent=g10
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	77440	77442	.	-	0	Parent=g10.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	78043	78927	1	-	.	Parent=g10.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	77440	78042	1	-	0	ID=g10.t1.cds;Parent=g10.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	78928	79821	0.94	-	0	ID=g10.t1.cds;Parent=g10.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	79819	79821	.	-	0	Parent=g10.t1
# protein sequence = [MDLTWYALLVPLFFFLHKCFFSTSNKLPPSPTKLPIIGNLHQLGSLPHRSLHKLSKKYGSLMLLHFGSKPVIVASSVD
# AARDIMKTRDLVWSNRPKSSIADRIFYGSKDLAFSPYGEYWRQIKSITVLHLLSNKRVQSYRVTREEETSNMIEKIRQACDSNSSSSVINLRDCLCSL
# TNNIVSRVALGRKYNEEGQGGINAKVILHELGELLGTFSIGDYIPWLEWINKINGLDNKVEKVAKELDTFLESVIEEHVSRKNRGENSTGEAKDFVDV
# LLEIQNGKETGFLLQRDSLKAIILDNFAAGTDTTYTALEWIMIELLRHPRVMKKLEEEVRELAGGKTEITEDDLRNMQYLKAVIKETLRLHPPIPLLI
# PRESTEDIELLGYHIPAKTQVIINAWAIGRDPLSWDDPEEYRPERFLNSNIDLKGLNFELIPFGAGRRGCPGISFALVVIELALARLVHKFNFSLPKP
# EELDMTEASGVAIRRKSPLLALATPNIL]
# end gene g10
###
# start gene g11
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	82255	82716	0.99	-	.	ID=g11
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	82255	82716	0.99	-	.	ID=g11.t1;Parent=g11
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	82255	82257	.	-	0	Parent=g11.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	82255	82716	0.99	-	0	ID=g11.t1.cds;Parent=g11.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	82714	82716	.	-	0	Parent=g11.t1
# protein sequence = [MHYLKAVIKESRRLHPPIPLLVPRESIEDIILLGYKIPAKTGVIINSCSVGRDLLSWEKNPEEYRPERFLDNNIDLKG
# LNFELIPFGAGRRGCPGIVFAIVVIELALARIVHKFNLALSEGLKPEELNMTGGSGITIRRISPPLAVATPCSTS]
# end gene g11
###
# start gene g12
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	84750	86252	0.98	-	.	ID=g12
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	84750	86252	0.98	-	.	ID=g12.t1;Parent=g12
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	84750	84752	.	-	0	Parent=g12.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	84750	86252	0.98	-	0	ID=g12.t1.cds;Parent=g12.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	86250	86252	.	-	0	Parent=g12.t1
# protein sequence = [MISLFAVFPFLIFLGFILLSFFQLSSKKSKKNLPPSPPKLPLIGNFHQLGQQPHRSLQKLTNEYGPMMMLQFGSVPVL
# IASSAEAASHIMKTQDLGFANKPKSIIPSKLFFGPKDVAFTPYGEYWRNARSVCMLQLLNNKRVQSFSKIREEETSLLLRKINHSIGNSQVVDLTDLF
# VSMTNDVLCRVALGRKYCDGEEGKKFKSLLLEFVELLGVFNIGDYMPWLAWVNRFNGLNAKVDKVAEEFSAFLEGVIEEHKEKIKTDEKEEGSADFVD
# ILLQVQKENKSGFNVEMDSIKAIIMDMFSAGTDTTSTLLEWTMNELIRNPNALRKLRDEVRKVTQGKSDVTEDDLEHMPYLNAVMKESLRLHSPVPLL
# PREAIKDTKVLGYDVAAGTQVFVCPWAISRDPTIWENPEEFQPERFLDSCVDYKGLHFELIPFGAGRRGCPGITFAKVVNELALARMLFHFEFSLPNG
# AKAEDLDVDEALGITVRRKFPLLVVATPRI]
# end gene g12
###
# start gene g13
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	92895	94397	0.93	+	.	ID=g13
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	92895	94397	0.93	+	.	ID=g13.t1;Parent=g13
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	92895	92897	.	+	0	Parent=g13.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	92895	94397	0.93	+	0	ID=g13.t1.cds;Parent=g13.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	94395	94397	.	+	0	Parent=g13.t1
# protein sequence = [MISSFADFFFLFFLSFVLLSFFRLSSKKSKKNLPPSPPKFPFIGNFHQLGQQPHRSLQKLTNEYGPMMMLQFGSVPVL
# IASSAEAATQIMKTQDLGFANKPKSIIPSKLFFGPKDVAFTPYGEYWRNARSVCMLQLLNNKRVQSFSKIREEETSLLLRKINHSIDNSQVVDLTDLF
# VSMTNDVLCRVALGRKYCDGGEGKKFKSLVIELVELLGVFNIGDYMPWLVWVNHFNGLNAKVDKVAEEFSAFLEGVIEEHNEKIKTDEKEEGSADFVD
# ILLQVQKENKSGFNFEMDSIKAIIMDMFSAGTDTTSTLLEWTMNELIRNPNTLRKLRDEVRQVTQGKSDVTEDDLEHMPYLNAVMKESLRLHSPVPLL
# PREAIKDTKVLGYDVAAGTQVFVCPWAISRDPTIWENPEEFQPERFLDSCVDYKGLHFELIPFGAGRRGCPGITFAKVVNELALARMLFHFEFSLPNG
# IKAEDLDVDEALGITVRRKFPLLVVATPRI]
# end gene g13
###
# start gene g14
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	97558	101028	0.19	+	.	ID=g14
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	97558	101028	0.19	+	.	ID=g14.t1;Parent=g14
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	97558	97560	.	+	0	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	97660	98549	0.53	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	98743	99123	0.51	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	99302	99400	0.97	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	99450	99543	0.96	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	99659	99888	0.81	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	99981	100098	0.97	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	100256	100336	1	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	100402	100482	1	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	100581	100694	1	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	100798	100881	0.99	+	.	Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	97558	97659	1	+	0	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	98550	98742	0.49	+	0	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	99124	99301	0.97	+	2	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	99401	99449	0.96	+	1	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	99544	99658	0.81	+	0	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	99889	99980	0.97	+	2	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	100099	100255	0.98	+	0	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	100337	100401	1	+	2	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	100483	100580	1	+	0	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	100695	100797	1	+	1	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	100882	101028	0.99	+	0	ID=g14.t1.cds;Parent=g14.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	101026	101028	.	+	0	Parent=g14.t1
# protein sequence = [METERVTGFPLTNLDRRPRKRARLGWDVLPEPPKAQLGLFCGQDVGNVTSYASSRQLTDLTSAPFTIKGVAQNGSPPR
# REDDKDGHFVFELGENLTPRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGMKKYRDAAMIEVEMLQQLGKHDNGNRCVQIWNWFDYRNHICIVF
# EKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLDCVAFMHDLRLIHTDLKPENILLISPEYVKVPDYKVSSRSPKDGSYYKRIPKSSAIKVIDFGSTTY
# DRQNQTYVVSTRHYRAPEVILGLGWTYPCDIWSVGCILVELCSGEALFQTHENLEHLAMMEKVLGPLPQHMLKRVDRQAEKYVRRGRLDWPEGATSRD
# SIRAVLKLARLQNIIMQHVDHSAGDLINLLQGLLRYDPSERLTAREALRHPFFTRDHLRR]
# end gene g14
###
# start gene g15
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	106268	112852	0.23	+	.	ID=g15
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	106268	112852	0.23	+	.	ID=g15.t1;Parent=g15
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	106268	106270	.	+	0	Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	107051	107365	1	+	.	Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	107651	108461	1	+	.	Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	108681	108802	0.75	+	.	Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	108983	109232	0.99	+	.	Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	109749	111093	0.54	+	.	Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	111163	112033	0.66	+	.	Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	112196	112756	0.52	+	.	Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	106268	107050	0.87	+	0	ID=g15.t1.cds;Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	107366	107650	0.95	+	0	ID=g15.t1.cds;Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	108462	108680	0.98	+	0	ID=g15.t1.cds;Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	108803	108982	0.77	+	0	ID=g15.t1.cds;Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	109233	109748	0.77	+	0	ID=g15.t1.cds;Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	111094	111162	0.66	+	0	ID=g15.t1.cds;Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	112034	112195	0.75	+	0	ID=g15.t1.cds;Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	112757	112852	0.71	+	0	ID=g15.t1.cds;Parent=g15.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	112850	112852	.	+	0	Parent=g15.t1
# protein sequence = [MDAVNLAMKSSSSSFFLKTPCLFSSTKPISRAPSSVFTLPSTFRPLVKCIQAPFLPSPLNPDSKKPLNSVFTCSAVTS
# FPSQSHPNVHSGFSSAKLKLLISEFQSLIEPIDRVKRLMHYASLLPSMDGSVKTTENRVPGCTAQVWLHVSLDEEGKMRFLVDSDSEITKGFCACLVW
# LLDGAAPDEVLALKTEDLNALNAVGLNGKGSASRVNTWHNVLVSMQKRTRAAVAERDGKPRSELFPSMVVTADGIQPKGSYAEAQARFLFPDESRVQE
# LVNALKEKKIGVVAHFYMDPEVQGVLTAAQKFWPHIHISDSLVMADSAVKMAKSGCQYITVLGVDFMSENVRAILDQAGFPEVGVYRMSDEHIGCSLA
# EAASSPSYMDYLTTASVSSPSLHVVYINTSLETKAYSHELVPTITCTSSNVVQTILQAFAEVPDLKVWYGPDTYMGSNIMELFSQMSVMTDEEISEIH
# PLHNRMSIKSLLPRLHYFQDGTCIVHHLFGHEVVGKINEMYSDAFLTAHFEVPGEMFSLAMEAKKRGMGVVGSTQNILDFIKQRVQEALDRNVDEHLQ
# FVLGTESGMITSIVATVRKLLGSADPSSGGAKVTVEIVFPVSSESVTRTSTSSSLDRTFGEMRDSLKVSVIPGVASGEGCSLHGGCASCPYMKARHIP
# ASVKHTQTVKGGIFSLIQMNSLSSLLRVCHSLPHNKAGLSAYEAGRFRLLTPKGKQIADIGCEPILHMRHFQCSFCCHDATKMVLVVLKLKSDGSCLR
# LQSEV]
# end gene g15
###
# start gene g16
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	113718	117768	0.72	-	.	ID=g16
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	113718	117768	0.72	-	.	ID=g16.t1;Parent=g16
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	113718	113720	.	-	0	Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	114390	114676	0.99	-	.	Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	114773	114854	1	-	.	Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	114966	115200	0.96	-	.	Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	115578	117221	0.93	-	.	Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	113718	114389	1	-	0	ID=g16.t1.cds;Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	114677	114772	0.99	-	0	ID=g16.t1.cds;Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	114855	114965	1	-	0	ID=g16.t1.cds;Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	115201	115577	0.9	-	2	ID=g16.t1.cds;Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	117222	117768	0.74	-	0	ID=g16.t1.cds;Parent=g16.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	117766	117768	.	-	0	Parent=g16.t1
# protein sequence = [MAASPSSTMILSSKSSRASLSWKNQLASTSAFRVSAVTLPRRSPRQCPRFVVFSMDAKPTVLVAEKLGEAGLKLLKEF
# ANVDCSYNLTPEELCTKISLCDALVVRSGTKVTREIFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQA
# DASVKAGKWLRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVQLVSFDEALASADFISLHMPLTPATKQILNDETF
# AKMKKGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTVEPPPKDSKLIQHENVTATPHLGASTTEAQEGVAIEVAEAVVGALKGELSATAVNAP
# MVPAEVLLELKPFVVLAEKLGRLAVQLVAGGSGVKSVKVTYGSARAPDDLDTRLLRAMITKGMIEPISSVFINLVNADFTAIQRGLQISEERLILDGS
# PESPVEFIQVQIANVESKFASAISDLGEIRVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCSQVDQPGMIGKVGSVLGEENVNVSFMSVGRVAPRKQA
# VMAIGVDEQPSKESLKRIGEIPAIQEFVYLGL]
# end gene g16
###
# start gene g17
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	122626	123585	1	+	.	ID=g17
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	122626	123585	1	+	.	ID=g17.t1;Parent=g17
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	122626	122628	.	+	0	Parent=g17.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	122626	123585	1	+	0	ID=g17.t1.cds;Parent=g17.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	123583	123585	.	+	0	Parent=g17.t1
# protein sequence = [MGYANGLLCPLGKQPLLSFGVISDVQYADIDDGTSFLGVPRYYRHSVSVLQRAVKKWNQEKPKFVLNFGDIVDGYCPK
# DQSMIAVKKIVDEFDKFNGTVYHMIGNHCLYNLPRKDLLPLLRIPGHDDHAYFDFSPIPEYRFVILDAYDISAIGWPEDHPNTLKALKVLQEKNPNSD
# KNSPSGLVGPARRFLMFNGGVGKEQLEWLDHVLQEATKLNQNVIVCCHLPLDPGASSLAALLWNYDEVMDVIHRYSCVKVCMGGHDHKGGQSVDSHGV
# HHRVLEAALECPPGTDSFGHIDAFDDRLLLFGTDRMKSTEMVFRH]
# end gene g17
###
# start gene g18
C03SLm0100M07.1	AUGUSTUS_ab_initio	gene	130577	131703	0.6	-	.	ID=g18
C03SLm0100M07.1	AUGUSTUS_ab_initio	transcript	130577	131703	0.6	-	.	ID=g18.t1;Parent=g18
C03SLm0100M07.1	AUGUSTUS_ab_initio	stop_codon	130577	130579	.	-	0	Parent=g18.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	intron	130993	131570	0.67	-	.	Parent=g18.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	130577	130992	0.6	-	2	ID=g18.t1.cds;Parent=g18.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	CDS	131571	131703	0.91	-	0	ID=g18.t1.cds;Parent=g18.t1
C03SLm0100M07.1	AUGUSTUS_ab_initio	start_codon	131701	131703	.	-	0	Parent=g18.t1
# protein sequence = [MAISTRAIFVATIVICSFLAVCEGDILFSTLKKSIEVKADHKAGGSDSGYKSVKLELCYAPISQKDRAWRKTEDHLKK
# DKTCQFKIATVPYKSSNNNYNWTIKRDIPTATYFVRAYVLNGNGEEIGYGQNTDDKKVDNLFSIQAISGRHATLDICSVVFSAFSVVSLFAFFYMEKR
# KARAGK]
# end gene g18
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C03SLm0100M07-tKPFI/AUGUSTUS_ab_initio/seq_with_defline_removed