##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C03HBa0030O03-ZQ2BL/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 119955, name = C03HBa0030O03.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	2	1822	0.56	+	.	ID=g1
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	2	1822	0.56	+	.	ID=g1.t1;Parent=g1
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	2	4	.	+	0	Parent=g1.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	354	424	1	+	.	Parent=g1.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	1166	1244	1	+	.	Parent=g1.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	2	353	0.56	+	0	ID=g1.t1.cds;Parent=g1.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	425	1165	1	+	2	ID=g1.t1.cds;Parent=g1.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	1245	1822	1	+	2	ID=g1.t1.cds;Parent=g1.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	1820	1822	.	+	0	Parent=g1.t1
# protein sequence = [MNNNFKGPMPDWNKLFALKSLYLSNNNFSGQIPDDAFKGMIYLKKLYLANNQFTGNIPTSLATSCPRLFDLTLQNNKF
# TGSIPDFRGGVLKLLNVSNNQLDGPIPPSLSLMDPTAFAGNKGMCGKPLESVCNSPIPEANTTTPPNTLNSTINTTQSGDIDNKSPSLLSRVMLIVAV
# CLVVLCLVIVLILIILRRRSQNNPQLTSRAAVESSNIDGDQNMTVSSLAALPDTTMSGNPTYNARHDDNNKASAEAPGATVVGKLSFVRDDRTRFDLQ
# DLLRASAEVLGSGNLGSSYKALLMDGQAVVVKRFKQMNHVAKEDFHEHMRRLGRLSHPNLLPLVAYYYRKEEKLLVYDYASNGSLASHLHGNHSRLDW
# SSRLKIIKGVAKALAYLHNELPSLALPHGHLKSSNVLLDKYSNPLLMDYTLAPLVNLSQVQHLLVAYKAPEYAQQGRITRKTDVWSLGILILETLTGK
# FPTNYLALSTGYGTELATWIDTIIKDNESAFDKEMDQLTHQGQIQKLFNIGVACCQEDLDTRWDLKEAIESIQALNDKDDQVDDGV]
# end gene g1
###
# start gene g2
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	8047	16710	0.06	+	.	ID=g2
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	8047	16710	0.06	+	.	ID=g2.t1;Parent=g2
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	8047	8049	.	+	0	Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	8638	9245	0.98	+	.	Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	9384	9812	0.66	+	.	Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	10059	11011	0.21	+	.	Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	11195	15618	0.58	+	.	Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	15837	16385	0.79	+	.	Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	8047	8637	0.95	+	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	9246	9383	0.68	+	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	9813	10058	0.69	+	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	11012	11194	0.39	+	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	15619	15836	0.67	+	0	ID=g2.t1.cds;Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	16386	16710	0.83	+	1	ID=g2.t1.cds;Parent=g2.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	16708	16710	.	+	0	Parent=g2.t1
# protein sequence = [MRCIQMFSHCLLSNLSFAVPNSKPQLFPIRFSCHCNTFFYCNLIRPEQVCHKLRSYAPLVPLAARSSSSKRTEDTEEV
# IAEAREAVSYYLQELGVSHKESIEVALNSPNYVSMLIDSVRELDEFSLWNSTDFEKAYDPVPAIPPFKSKVYLMAKQKGDKGMLPFLESIGLTLSSAT
# HLARYLSSNSLFQTLPTLINKVKYVKKIFFANSDDGGHIARNARQMMMHLSISIDEDVQQTLSFFQKIQARRGGLHLLGSQDASFRHLIESFPRLLLL
# PKESHMKRLMVFLDDIGVVEGCKRQILLLFPPIIFYDIEKDVRPRLQAILKVPKISVSQAIKSCPLLLGLSVNKLKLVVEQLGDFGIRNQKLGKVIAT
# SPQLLLQKPQEFHQIVCFLRDLGLDDDIIGRILGRCPEIFASSIGRTLKRKLNFLMGIGVSRSHLPRIIRKYPEFFVCDIHRALRPRMMYLMHVGLSK
# REVALMVCRFSPLLGYSIDEVLKPKVEFLMNSMGKPISDVVEYPRYFSYSLEKKIKPRYWVLNGRNMECSLKSMLGKNDEEFAAEFGKGKMLVPPL]
# end gene g2
###
# start gene g3
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	19111	37162	0.02	+	.	ID=g3
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	19111	37162	0.02	+	.	ID=g3.t1;Parent=g3
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	19111	19113	.	+	0	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	19351	19416	0.99	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	19473	20316	0.54	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	20355	21601	0.3	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	21696	22957	0.62	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	23067	23157	0.95	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	23229	23412	0.95	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	23483	23893	0.98	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	23957	27559	0.79	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	27632	27719	1	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	27822	28170	0.54	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	28246	30767	0.97	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	30885	32103	0.82	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	32221	33317	0.96	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	33375	33665	0.3	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	33847	36857	0.32	+	.	Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	19111	19350	0.73	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	19417	19472	0.99	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	20317	20354	0.29	+	1	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	21602	21695	0.29	+	2	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	22958	23066	1	+	1	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	23158	23228	0.95	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	23413	23482	0.95	+	1	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	23894	23956	0.93	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	27560	27631	1	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	27720	27821	1	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	28171	28245	0.97	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	30768	30884	0.88	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	32104	32220	0.99	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	33318	33374	0.88	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	33666	33846	0.28	+	0	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	36858	37162	0.38	+	2	ID=g3.t1.cds;Parent=g3.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	37160	37162	.	+	0	Parent=g3.t1
# protein sequence = [MAVAGTHFTVVQQPQVLFAPKSCSIYSRTFSFPSGKSQSNHQFQFQYHTKSKYGVLNCICCSTDSNSSRGFGPSDGNT
# NKGKNSATARRQAKGTVRPQRNSSTRQSDDLLNQAPRLNSTNDVRKSKSVGSDLQFEERLDVVKRSALQQKKTEEEKAYGAIDYDAPVESRSTTIGLG
# TKVIGVGAAVIVFGLLFALGDFLPSGSVSPTEEIASKGKRIAEDERANLLKTLQQFEATLASSPEDPISLEGAAVTLSELGEYNRASSLLEELIKKKP
# SDPDVYRLLGEVKYGLMDYEGSAAAFRMSAMVSGTIDFEVQRGLTNALIAARKPDEAVQMLLASRKSLKEEKTSGSSDGTKNSAAKSKSEVDPIQVDL
# LLGKAYSEWGHISDAVSVYNQLISTYPDDFRGYLAKGIILKENGNVGDAERMFIQTQQQFNNILSLYFSHGIRASKILVNNQRASAAGGQLLSSIYAV
# HLANDYVSKSWITVYLCDPGNNGSKMVTKTNSISTEWPMHRRSNSIDILKIKGAEVTNPEEMKNFIASFYQELYKESENWRPDFTLQWNTKISTEEQE
# WLERLLEEDEILEGLKQFCH]
# end gene g3
###
# start gene g4
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	40173	40745	0.96	-	.	ID=g4
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	40173	40745	0.96	-	.	ID=g4.t1;Parent=g4
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	40173	40175	.	-	0	Parent=g4.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	40173	40745	0.96	-	0	ID=g4.t1.cds;Parent=g4.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	40743	40745	.	-	0	Parent=g4.t1
# protein sequence = [MNMDIPSNNKQLLRSGSSCNKIRQIVRLQQLLKKWKKIAAASPSSTHLQRNTSSGTSINKFLKKTLSFSDKEDVSNSN
# NNNNVPKGCLAVLCVGKEEEKRFVIPMDYLAHQSFQVLLREAEEEFGFQQQGILKIPCQISLFDKILKTIQSNKQQPNEDTTIHNNVVGACCCSPDNH
# QQQHNIMPPQLCSI]
# end gene g4
###
# start gene g5
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	46652	71493	0.01	-	.	ID=g5
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	46652	71493	0.01	-	.	ID=g5.t1;Parent=g5
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	46652	46654	.	-	0	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	47955	48029	1	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	48275	48680	0.91	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	48807	48876	0.99	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	48994	49068	0.72	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	49989	50072	0.75	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	50467	53053	0.46	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	54328	54442	0.72	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	54690	54785	0.86	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	54861	56615	0.34	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	56946	61179	0.96	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	61318	61416	0.54	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	61550	61664	0.96	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	62253	64165	0.56	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	64214	64286	0.61	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	64361	64484	0.59	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	64563	64650	0.92	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	64803	64885	0.92	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	65035	65126	1	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	65274	69346	0.54	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	69430	70864	0.7	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	71250	71326	0.99	-	.	Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	46652	47954	0.94	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	48030	48274	0.93	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	48681	48806	1	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	48877	48993	0.74	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	49069	49988	0.98	-	2	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	50073	50466	0.64	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	53054	54327	0.95	-	2	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	54443	54689	0.61	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	54786	54860	0.45	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	56616	56945	0.5	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	61180	61317	0.99	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	61417	61549	0.53	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	61665	62252	0.88	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	64166	64213	0.62	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	64287	64360	0.95	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	64485	64562	0.52	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	64651	64802	0.92	-	2	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	64886	65034	1	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	65127	65273	1	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	69347	69429	0.98	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	70865	71249	0.99	-	1	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	71327	71493	0.6	-	0	ID=g5.t1.cds;Parent=g5.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	71491	71493	.	-	0	Parent=g5.t1
# protein sequence = [MFCSTEEEEEGMSKKMVTRRELLDRWRGIEEEDEDDDIASVDPLKRHRFRQLKEEWFSDAFNHLIFMPHENHIWCGSW
# ELMGPLLETFYNYNKDDRTDSPLKLLHDRTSREMRLCTQCICQYHQAQELYSTEYDPTSIGPLLEVLRTLDEERITQHLKDINNRIRCGDYDIVHGSG
# EIVGIMFEGVYALLFHKGRRARSIGLRLAGRMSKLRQSAELDALQHLLKKYISYLAADFSPLSTPNLRPRVELDRVTVWLGIKALLGFLEPPAFEEGI
# LDRYPIFLSVVLNHISDDSPEFSYAVNCLRLLFEMLGYKLWLKTSLSPSVMRNTLLGQCFHTRNEKIHKEIFDLFLPFLQAYFSLSYSLEALQDGEHE
# KQRRNLLYFLLHQATIALLIVHRGYTMNPPSPPYECAHMXFASVTMFKREAENASRGPSLLSSLKDSSLHSSLRQPAFDAIQAIIVSDASALVTSILK
# YQLATSGERCLPLQLDEEEDRGNLFGCDFEENDVSCWNEFSSQADITSALCGDWMCIPMLWFEVLVETDPLILPVSFAKSVFWALSRLPFLESDNEFG
# MTPSASHWLRNCGSDVSHVFSWKVPSGSNDGGEGVESKNSIRVSTKCMPLIRLFKRSTAHFIIRMEQGELRKQWTWEPMMSDSLILLLVDPNDVIVSF
# QKNARHVGRCILEQVSNTRGLTSGLQFLCSMPSSLSATTTGLRHALKLVQLDCVLSEFQTLHHFFFVLCKLLKEGNSCSQPLVRKSSEDSSISKFSSQ
# GGFLKQPVLQAQSEHMDAHKSVVSSILWEKFCCLLSEMAWICVQKCLAAGKVFIGQKPSQTFEKFAVHVFGLQLTTFLETVNAEDMTCIRLLETLPVV
# FRRLCRVPTTVLNNAVTQCLRDLIDWGYSPLAVVVRYWKDALISLLILIKASCSGVPASLAADIEKLILYNIPMNELTKQVARLSVSLVDERYIDLKK
# TSIDSKCLPGEEFVHTKNSLAEAAAPFSRLGKEMHIPDLKTFVGEERSNAIVHSGDERETDTSAGADINSCISFDPKLVGHIAASVVYSNPAKKIDSR
# KISQPIDLCLDLDIPRLQLNALHARKDSPLVKSKAMEPKNKETDIKCHLNDTNLNSKENSHVTSGLHSALGSSSYGGVCMKENEGEAVQHDMKPNDTV
# LKELVSETRSDRESVFLTSVRRQQSFSLKTSFSGPKRKVIQLGLPVENRSNALRLDDGVKRFKAVRLDDWYRPILECNYFLTVGLTTAGEGKNDTLSK
# LKEVPVCFQSVDEYVEIFRPLILEEFKAQLQSSFQEITSLEEMSCGSLSVMSVERIDDFHFIRCVHEDVDSSGSKSCSDNDLILLTRQPLRDSCPDIH
# MVGKVEKRERDCKRRSSILLIRLYLQNRPHLMRAQKFLVARSKWCISRLMTITSQLREFQALSAIRGIPLLPVILNPTSYNHCKHYGESFNKLSRPLQ
# QVLKSAYNDSQLQAISAAIGPFDPKKDFQLSLIQGPPGTGKTRVIVAIVSSLLSFSQVDTKRSSNGGLKSTGMSCTASRQRICQAAAVARAWQVAALA
# RQLNGDLENDKPVGNCSKRRILICAQSNAAVDELVSRISSEGLYSSDGTMYKPYIVRVGNTKTVHPNSLPFFIDTLVDHRIAEEKINATDSKNDASED
# TLTFLRSNLEKLVDTIKCYEAKRASLRDGDSDSNSLLEGGTDKADNAKEMSDAEVEAKLRILYERKKSIYMDLAAAQARERKANEETKALRHKLRKAI
# LKEAEIVATTLSGCGGDLHGVCAASVSGQRFSSSSEGVLFDAVVIDEAAQNGSPFRLSKKLRFCNFQALEPASLIPLQLLKSTGTRCVMVGDPKQLPA
# TVLSNIASKFSFQCSMFERLQRAGYPVNMLTQQYRMHPEICRFPSFHFYDGKLVDGDQLSSKVASFHGTKGLGPYVFFDIVDGKELHDKKSGTLSLYN
# ECEADAAVEVLRFFKRRFPSEFAGGRIGIITPYRCQLSLLRSRFSSAFGSSITADMEFNTVDGFQGREVDIVILSTVRAFEACSNATQVNSSRIGFVA
# DVRRMNVALTRAKLSLWIMGNARTLRTNQNWEALVKDAKERELVMSLKRPYNATFKSSDREKLLTSEKPENCSRTLKHVSGVETTCQHADSQKNNVKH
# VTERKRKDTSLGAPIDIPIRAELYGKNVEGEQRSKDESSLLLKKDLNNDHCRNTKGAHILLRQNQSESSESCEKISKKHRKERKAHGHHGKHCDSLES
# NLGNSKKSRSDNHKHSISVASERFQLPLEHDDKLRNTRGWKNPAKTSLMQKDVEDGIGACNQVKQPDHIISERKQQRDAVDALLSSALISSNKSRSSL
# KSLPAKRMSSPNAGCPPIRPSKQNKVKVFKLSIKFAEMIRSYIFLILSPNKCPLTKLE]
# end gene g5
###
# start gene g6
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	85484	89703	0.47	+	.	ID=g6
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	85484	89703	0.47	+	.	ID=g6.t1;Parent=g6
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	85484	85486	.	+	0	Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	85670	85737	0.97	+	.	Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	85833	86320	1	+	.	Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	86655	86808	0.56	+	.	Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	87047	89452	0.94	+	.	Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	85484	85669	0.94	+	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	85738	85832	1	+	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	86321	86654	0.55	+	1	ID=g6.t1.cds;Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	86809	87046	1	+	0	ID=g6.t1.cds;Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	89453	89703	0.92	+	2	ID=g6.t1.cds;Parent=g6.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	89701	89703	.	+	0	Parent=g6.t1
# protein sequence = [MRHTSTTNLFIVSMAAESQSQKKTYCVVGDIMIIPKDFNLSPTKDRQINLQLNFPDVGRVFNDFIRTQEVGEFFSGAL
# AGAMTKAILAPLETIRTRMVVGVGSRNIGTSFIQVIEQQGWQGLWAGNTINMLRIIPTQAIELGTFECVKRAMTSAQEKWTDTGSPKLQIGNASLSFS
# LSWLSPVAVAGAAAGVVSTLACHPLEVLKDRLTVSPEVYPSIRIAVHKIYKDGGIAGLYAGLGPTLIGMLPYSTCYYFMYETIKKSYCRAQKKESLSR
# AEMLLVGAFSGLTASTISYPLEVARKRLMVGALQGKCPPHMVAALSEVIREEGLLGLYRGWGASCLKVMPSSGITWTLYEAWKDILLADRRHV]
# end gene g6
###
# start gene g7
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	91278	99019	0.11	-	.	ID=g7
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	91278	99019	0.11	-	.	ID=g7.t1;Parent=g7
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	91278	91280	.	-	0	Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	91413	94084	0.4	-	.	Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	94280	94848	0.83	-	.	Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	94960	95049	0.53	-	.	Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	95263	96322	0.73	-	.	Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	96431	96541	0.74	-	.	Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	96684	96776	0.97	-	.	Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	98177	98407	0.99	-	.	Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	91278	91412	0.39	-	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	94085	94279	0.6	-	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	94849	94959	0.54	-	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	95050	95262	0.67	-	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	96323	96430	0.73	-	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	96542	96683	1	-	1	ID=g7.t1.cds;Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	96777	98176	0.96	-	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	98408	99019	1	-	0	ID=g7.t1.cds;Parent=g7.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	99017	99019	.	-	0	Parent=g7.t1
# protein sequence = [MATESPMRIFQDSRKGKWVSAKDTVNFASPMNEVAADELGLLLKGHKIHGHNRNKVPNRSGSAPPSMEGSFSAYGNLV
# YDQSSGRKLSLASLDNAMQNWQSEEQMRADPSYFAYYNSNVNLNPRLPPPIISRENRHLAHHFADLGDSCQLNSSENSKDGSLHVTRSSLSTHDEEPE
# DENLPQSASGQHLASFAGQHKSLVDLIQEDFPRTPSPVYNQTRSSGHVAAEEPTDSDMQSLTLDGLSLDISNKHGADACADVLGDHDIAASNQPLAIT
# LEKESCVDSLGKSHSPQKGELPGNDAHLVNELLVGDEIASGILKNVQAPEASKNEDEQYFHSRNAVEQKQQQQYHSQRSTTYQVNGPQVQANTLGTNT
# LQSSLAKGYGQSWSSSVEVQAAPQGSGLTPPLYATAAAYMASGNPYYSNLSPSGGYAPQYNMGGYALSSPSLSPFLAGYPSMHINTSSGRSISGQNVA
# PRENIPQVGDLHHLTKFFGHHGLMVHPFPDPFHMQYFHHPHPVDDSHTSPSQHMRFPSPGVFGLEVDAYASQKESNLPSYIAEQNFLRPPIGSLNLPS
# PGKMIIPGNNYFGSPSGLGFTQQFPASPLGSPVLPGSPIGRRNEIKPSPGSGRNNGLYSGWTAQRGPGSLNDSKRHSFLEELKQSNARRIDLSDIAGR
# VVEFSVDQHGSRFIQQKLENCSIEEKASVFKEILPHASKLITDVFGNYVIQKFFEHGSHEQRKMLACQLAGQMLPLSLQMYGCRVIQKALEVIDLDQK
# TELVHELNGHVMKCVRDQNGNHVIQKCIECIPPEKINFIISSFQGQVAILSTHPYGCRVIQRILEHCSENSQSQSIVHEILESAYPLAQDQYGNYVTQ
# HVLERGRPHERSRIIGKLTGNVVQLSQHKYASNVVEKCLEYGDSTERDYLIEEILAESEGNDCLLILEPVNPRSLNKEFSTRPVDGGIVCSSRTVDCS
# VSSMQSTSGNC]
# end gene g7
###
# start gene g8
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	102396	103865	0.17	-	.	ID=g8
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	102396	103865	0.17	-	.	ID=g8.t1;Parent=g8
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	102396	102398	.	-	0	Parent=g8.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	102485	103648	0.19	-	.	Parent=g8.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	102396	102484	0.69	-	2	ID=g8.t1.cds;Parent=g8.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	103649	103865	0.17	-	0	ID=g8.t1.cds;Parent=g8.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	103863	103865	.	-	0	Parent=g8.t1
# protein sequence = [MNQRSIFFFSQIISLLKFSFASLSLTGELSLVLVNKQWADLFRQDLLWNAALLTTFPLAANRNRWPGQACPKGDVTFP
# IVQGLIKSNGECLKGFSQTSATA]
# end gene g8
###
# start gene g9
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	104353	110153	0.23	-	.	ID=g9
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	104353	110153	0.23	-	.	ID=g9.t1;Parent=g9
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	104353	104355	.	-	0	Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	104546	105006	0.65	-	.	Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	105179	105340	0.85	-	.	Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	105396	105975	0.75	-	.	Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	106030	108091	0.74	-	.	Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	108302	110072	0.86	-	.	Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	104353	104545	0.51	-	1	ID=g9.t1.cds;Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	105007	105178	0.82	-	2	ID=g9.t1.cds;Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	105341	105395	0.95	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	105976	106029	0.78	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	108092	108301	0.88	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	110073	110153	0.77	-	0	ID=g9.t1.cds;Parent=g9.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	110151	110153	.	-	0	Parent=g9.t1
# protein sequence = [MLQLPQHQQQILAQQQLRQASMPGLGQLHGQPQMQFSQPLGAQQFQGRQLPSGALHHGMGQSQLNQGNQLNRHLNQFS
# SPMNTALFNSAQSTPSSQMISNMSAMVPSQTLLPRMQFGMSGGTRNLAAANLSDQMFNMGGNNPGMMSIQQQQHGTFGNMSQNTQNLQQGMMPLQNAP
# QTHPSFQQQRPQGQQRSICDNDDEVGVGDVVKMGDEGMRVVRMVGKEMKRNSNGDVQGRHSPEVGIGELRTRTDLHNQ]
# end gene g9
###
# start gene g10
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	111627	115477	0.48	-	.	ID=g10
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	111627	115477	0.48	-	.	ID=g10.t1;Parent=g10
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	111627	111629	.	-	0	Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	111791	112205	0.98	-	.	Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	112387	112460	0.76	-	.	Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	112586	113766	0.98	-	.	Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	113892	115277	0.8	-	.	Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	111627	111790	0.79	-	2	ID=g10.t1.cds;Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	112206	112386	0.96	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	112461	112585	0.76	-	2	ID=g10.t1.cds;Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	113767	113891	0.99	-	1	ID=g10.t1.cds;Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	115278	115477	1	-	0	ID=g10.t1.cds;Parent=g10.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	115475	115477	.	-	0	Parent=g10.t1
# protein sequence = [MEGVVAAQDQQQQQPQPPRVVEGLNPAVQQQLNLESVKTRAVSLFKAISRILEDFDAIARTNAVPKWQDILGQFSMVN
# LELYNIVEDIKKVSKAFVVHPKNVNAENAAILPVMLSSKLLPEMEVEDNAKREQLLHSMQHLSVASQIEKLKVRIDMIGAACESAEKVIADTRKAYFG
# TRQGPTLLPTIDKAQAAKIQEQENLLRTAVNHGEGLRVPGDQRHITSALPGHLVDVLTVSDGPQSFADSSGSLSSIVVLLFPLYFMNI]
# end gene g10
###
# start gene g11
C03HBa0030O03.1	AUGUSTUS_ab_initio	gene	115988	116604	0.83	+	.	ID=g11
C03HBa0030O03.1	AUGUSTUS_ab_initio	transcript	115988	116604	0.83	+	.	ID=g11.t1;Parent=g11
C03HBa0030O03.1	AUGUSTUS_ab_initio	start_codon	115988	115990	.	+	0	Parent=g11.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	intron	116161	116405	0.88	+	.	Parent=g11.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	115988	116160	0.93	+	0	ID=g11.t1.cds;Parent=g11.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	CDS	116406	116604	0.88	+	1	ID=g11.t1.cds;Parent=g11.t1
C03HBa0030O03.1	AUGUSTUS_ab_initio	stop_codon	116602	116604	.	+	0	Parent=g11.t1
# protein sequence = [MRRTEATRRQSRVREKCLWSHRQEEWWMWQLSPVDFCHFMAGSNGDLKVSVWPDFGLSWKWLRNGSLVTLWLVFGDFE
# LKNLLELEKMKEQRGLVVHCCSLVNLEVTSGSVEVGTMGFRIAVV]
# end gene g11
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C03HBa0030O03-ZQ2BL/AUGUSTUS_ab_initio/seq_with_defline_removed