<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 05:24:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352316" ref_strand="+" ref_description="SGN-E352316 [cTOS-9-O15]">
      <seq>caaaatcaaatgcttatcatggatcagatccagcaattgtgctcttatttgaaccatcattgctcaactttgtagcagagtacaaaattatatgtgcttttccatcgacagattttgacaaggcaactgaatttgatatatattactcaagagagggttgttggaaaattgctgaggagatgtgctttggaagtagaacaatatttccaaaatcagggatccatgtgaatggcgttgtttactggatgacaagtaagaatattcttgcttttgatctaacaaagggtaggacacagctccttgaaagctatggcactcgtgggttcttggggacttttagtggaaagctctgtaaggttgatgtcagtggtgatataatcagcttaaacgttttggctaatacccactcaaatacaatgcaaataggtagccaaatcaaaatgtggtcagagaaagagattgttgttcttgacagtgaaattgttggggatggtgcagcaagggaccacacagttttacatgttgacagtgatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="7172" stop="6036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6872" g_stop="6336" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E352316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6872" e_stop="6336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCAAATGCTTATCATGGATCAGATCCAGCAATTGTGCTCTTATTTGAACCATCATTGCTCAACTTTGTAGCAGAGTACAAAATTATATGTGCTTTTCCATCGACAGATTTTGACAAGGCAACTGAATTTGATATATATTACTCAAGAGAGGGTTGTTGGAAAATTGCTGAGGAGATGTGCTTTGGAAGTAGAACAATATTTCCAAAATCAGGGATCCATGTGAATGGCGTTGTTTACTGGATGACAAGTAAGAATATTCTTGCTTTTGATCTAACAAAGGGTAGGACACAGCTCCTTGAAAGCTATGGCACTCGTGGGTTCTTGGGGACTTTTAGTGGAAAGCTCTGTAAGGTTGATGTCAGTGGTGATATAATCAGCTTAAACGTTTTGGCTAATACCCACTCAAATACAATGCAAATAGGTAGCCAAATCAAAATGTGGTCAGAGAAAGAGATTGTTGTTCTTGACAGTGAAATTGTTGGGGATGGTGCAGCAAGGAACCACACAGTTTTACATGTTGACAGTGATATAA</genome_strand>
        <mrna_strand>CAAAATCAAATGCTTATCATGGATCAGATCCAGCAATTGTGCTCTTATTTGAACCATCATTGCTCAACTTTGTAGCAGAGTACAAAATTATATGTGCTTTTCCATCGACAGATTTTGACAAGGCAACTGAATTTGATATATATTACTCAAGAGAGGGTTGTTGGAAAATTGCTGAGGAGATGTGCTTTGGAAGTAGAACAATATTTCCAAAATCAGGGATCCATGTGAATGGCGTTGTTTACTGGATGACAAGTAAGAATATTCTTGCTTTTGATCTAACAAAGGGTAGGACACAGCTCCTTGAAAGCTATGGCACTCGTGGGTTCTTGGGGACTTTTAGTGGAAAGCTCTGTAAGGTTGATGTCAGTGGTGATATAATCAGCTTAAACGTTTTGGCTAATACCCACTCAAATACAATGCAAATAGGTAGCCAAATCAAAATGTGGTCAGAGAAAGAGATTGTTGTTCTTGACAGTGAAATTGTTGGGGATGGTGCAGCAAGGGACCACACAGTTTTACATGTTGACAGTGATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446983" ref_strand="+" ref_description="SGN-E446983 [cSTA-23-N10]">
      <seq>ctcacattggtgaagtaatcatcaataaatgcttttgcactagaaggaatccaattagcatctctgctgctgctatatatttggcatgtcaactagaggacaagcggaagacccaggctgaaatatgtaaggtgactggactaactgaggttactcttcgtaaggtgtacaaggagcttttggagaactgggatgatctcctaccctcaagttataaaccagttgttccaccagagaaggcttttccttcagctaccattgctacaggccgttcattaacacctagagttgatttagttgagggaacttcatctgagagggacaagcctgttaaaccagtcaactcattagatgtatctcctcagatcagaggcaaggaggactctcatagcaaagataatattaatacgactcaattatcttggccaccaccattttggaagcctgaagctcctactgaaggtggtgttaaaacagctacagagaagagtcagaatgctactcaagaaatggaaattgatttataatataaatctcagtaagatgcaccttttcacaaatagcaaaaactgcttctagttctttgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="11106" stop="9926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10806" g_stop="10269" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E446983" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10806" e_stop="10269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATTGGTGAAGTAATCATCAATAAATGCTTTTGCACTAGAAGGAATCCAATTAGCATCTCTGCTGCTGCTATATATTTGGCATGTCAACTAGAGGACAAGCGGAAGACCCAGGCTGAAATATGTAAGGTGACTGGACTAACTGAGGTTACTCTTCGTAAGGTGTACAAGGAGCTTTTGGAGAACTGGGATGATCTCCTACCATCAAGTTATAAACCAGTTGTTCCACCAGAGAAGGCTTTTCCTTCAGCTACCATTGCTACAGGCCGTTCATCAACACCGAGAGTTGATATAGTTGAGGGAACTTCATCTGAGAGGGACAAGCCAGTTAAACCAGTCGACTCATTAGATATATCTCCTCAGATCAGAGGCAAGGAGGACTCCGACAGCAAAGATAATATTAATACAACTCAATTATCTTGGCCACCACCATTTTGGAAGCCTCAAGCTCCTGCTGAAGGTGGTGTTAAATCAGCTACAGATAAGAGTCAGAATGCTACTGAAGAAATGGAGATTGATTTATAATATAAATCTCA</genome_strand>
        <mrna_strand>CTCACATTGGTGAAGTAATCATCAATAAATGCTTTTGCACTAGAAGGAATCCAATTAGCATCTCTGCTGCTGCTATATATTTGGCATGTCAACTAGAGGACAAGCGGAAGACCCAGGCTGAAATATGTAAGGTGACTGGACTAACTGAGGTTACTCTTCGTAAGGTGTACAAGGAGCTTTTGGAGAACTGGGATGATCTCCTACCCTCAAGTTATAAACCAGTTGTTCCACCAGAGAAGGCTTTTCCTTCAGCTACCATTGCTACAGGCCGTTCATTAACACCTAGAGTTGATTTAGTTGAGGGAACTTCATCTGAGAGGGACAAGCCTGTTAAACCAGTCAACTCATTAGATGTATCTCCTCAGATCAGAGGCAAGGAGGACTCTCATAGCAAAGATAATATTAATACGACTCAATTATCTTGGCCACCACCATTTTGGAAGCCTGAAGCTCCTACTGAAGGTGGTGTTAAAACAGCTACAGAGAAGAGTCAGAATGCTACTCAAGAAATGGAAATTGATTTATAATATAAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276510" ref_strand="+" ref_description="SGN-E276510 [cLEN-17-I3]">
      <seq>atgcttattttttgcaactgtgtggaaatatcagttgcggccaatttacctcagaaggaaatcgggaagtacataaagattcttggagaagcgttacaactcagtcaacctatcaatagtaattctatatcagtccatatgccaaggttttgtacactccttcagctgaataaatctgctcaggagctggcgactcacattggtgaagtaatcatcaataaatgcttttgcactagaaggaatccaattagcatctctgctgctgctatatatttggcatgtcaactagaggacaagcggaagacccaggctgaaatatgtaaggtgactggactaactgaagttactcttcgtaaggtgtacaaggagcttttggagaactgggatgatctcctaccatcaagttataaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="11638" stop="10287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11338" g_stop="11315" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11314" i_stop="11229" i_length="86">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11228" g_stop="11070" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="183" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11069" i_stop="10817" i_length="253">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10816" g_stop="10587" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="413" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E276510" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11338" e_stop="11315"/>
          <exon e_start="11228" e_stop="11070"/>
          <exon e_start="10816" e_stop="10587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTATTTTTTGCAACTGAGTGGTAGTCTGAGATGCATTTCATAAAAAAACTTCCATGAACTTTCTGATTTTTCTGTGCTTTTCTAATTTGGATTAATTGATAACTAGGAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTCCATATGCCAAGGTTTTGTACACTCCTTCAGCTGAATAAATCTGCTCAGGTACCTAACTGGTTCATTCAGAAGTTAGTAATCAGTTAACTTAGATAATTGTATATACTATTGCCATTAACAAAAAATCAATAGCCGATAAAAACTCTATTTCCCAATCAATTTGTTTGAGACTGCGAATAAGTCATGTCATGTTGGTCCTATGTTTTTACTCAATTTCATCAAGAAGTTATTGTTTAGTTTACTTACGTTCCTCTGTATTTACTAAATCTTTTGACTGTATGTTGCACAACCATTGCATCAGGAGCTGGCGACTCACATTGGTGAAGTAATCATCAATAAATGCTTTTGCACTAGAAGGAATCCAATTAGCATCTCTGCTGCTGCTATATATTTGGCATGTCAACTAGAGGACAAGCGGAAGACCCAGGCTGAAATATGTAAGGTGACTGGACTAACTGAGGTTACTCTTCGTAAGGTGTACAAGGAGCTTTTGGAGAACTGGGATGATCTCCTACCATCAAGTTATAAACC</genome_strand>
        <mrna_strand>ATGCTTATTTTTTGCAACTGTGTG......................................................................................GAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTCCATATGCCAAGGTTTTGTACACTCCTTCAGCTGAATAAATCTGCTCAG.............................................................................................................................................................................................................................................................GAGCTGGCGACTCACATTGGTGAAGTAATCATCAATAAATGCTTTTGCACTAGAAGGAATCCAATTAGCATCTCTGCTGCTGCTATATATTTGGCATGTCAACTAGAGGACAAGCGGAAGACCCAGGCTGAAATATGTAAGGTGACTGGACTAACTGAAGTTACTCTTCGTAAGGTGTACAAGGAGCTTTTGGAGAACTGGGATGATCTCCTACCATCAAGTTATAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486588" ref_strand="+" ref_description="SGN-E486588 [cSTE-22-J21]">
      <seq>cagaactccaagcccccacgcctagctagttgaaatcagaaaaaatgcggtgtccgtactgctcggcggagcaagggcggtgtaccagcagcactagtggcagaccgataacagagtgcacatcctgcggccgggtagtggaggagcgattaacccaatcccaccatctttttcatacccgtgcccaagattctcctctgtgcctggctacttccgatctccccactcttcccatctccgccactaacgacgatgaagacccatttgaacccactagtttcatcaccgctttctctacttggtctctcgaaccctacccagtatttgcccaatcctccatttcattcgccggccaccttgcagagctcgagcgggtcctcgaaacgacgtcaacttccaccagttcgtcttcttcctctgtcgtggtggaaaatctccgggcttatttgcagattattgatgtggcttctattctgcgactggattatgatatttcggaccacgcgtttcagctcttcagggattgttcttcggcgacttgcttaaggaatcggagtgttgaagcgcttgctactgctgctcttgtgcacgctatcagggaagcccaagagccgagaactctccaggaaatatcagttgcagccaatttacctcagaaggaaatcgggaagtacataaagattcttggagaagcgttacaactcagtcaacctatcaatagtaattctatatcagtacatatgccaagggttttgtacactccttcagctgaataaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="13699" stop="10774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13399" g_stop="12775" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12774" i_stop="11229" i_length="1546">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11228" g_stop="11074" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="782" r_length="156" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E486588" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13399" e_stop="12775"/>
          <exon e_start="11228" e_stop="11074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACTGCAATTCCCCACGCCTAGCTAGTTGAAATCAG-AAAAATGCGGTGTCCGTACTGCTCGGCGGAGCAAGGGCGGTGTACCAGCAGCACCAGTGGCAGACCGATAACCGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCTGATCTCCCCACTCTTCCCATCTCCGCCACTAACGACGATGAAGACCCATTTGAACCCACTGGTTTCATCACCACTTTCTCTACTTGGTCTCTCGAACCCTACCCAGTATTTGCCCAATCCTCCATTTCATTCGCCGGTCACCTTGCAGAGCTCGAGCGGGTCCTCGAAATGACGTCAACTTCCTCCAGTTCGTCCTCTTCTTCTGTCGTGGTGGAAAATCTCCGGGCTTATTTGCAGATTATTGATGTGGCTTCTATTCTGCGACTGGATTCTGATATTTCGGACCACGCGTTTCAGCTCTTCAGGGATTGTTCTTCAGCAACTTGCTTAAGGAATCGGAGTGTTGAAGCGCTTGCTACTGCTGCTCTTGTGCACGCTATCAGGGAAGCCCAAGAGCCGAGAACTCTCCAGGTATGTTAAATTGGTAAATGGATGCCATAAATACTATGCCAAAAATCTCAATAGCAATAACATATTAGCTAATATTTCAATTCAAAAACTCAAAATAGATAGTACATGTTAAAAGTCTAGAACTTGAATGAGAAAAAAAAAGAATATAAGTCAAAACAGAGGTAGAAGTGACTCTGAAATCTGAGGAAGAACAAGGAAAAGAACTGAGGAAGAAGAAGAAAAGAAGAAATATGTATTGATTGGACTTTGGAGTTGCCAGAGAAGTCTGGCTGGCCGTCGGAGGAGTGTAGTCGAAAACCCTAAATGTACCTTTTAGCTTTTAAAATCCTAAATTTGTCGCCTTTTTTAACGAAAATACAAAATGCGACGCCTTTCTCGCCTCTCGCCTTTGTCGTAATGGCGTCGCCTGTCGAAGATGGCCTCGCCACAAAGCTAAAAAGCAATGAAGGGTCGCCTCGCCTCTCGCCATTGGCGACGAGGCAATCGCCTTTCACAACACTGGTAATTGCAGCTATGTAACTTCGTTTTTCTCAGTGCACCAACTGATTCAGCTGAACCTTTGTGATTGTAGTTTGTTTCGTATTGCTATTTCCTTTCTTGTTCTCTTGTTCAAGCTTATTTCCATCCTAGGGTTTATTCTAATGTTGATAACCTTTTGCCTTCTCCAAACCTCTCTTTTTCACTTACTACTTTTCCTCTTTCTTATCTTAAGTGGAAGATACCCTATATGTAGAAAATCATGGAAGGGAAAAAACAAAGAACAAAGAGGGAAATAGAAGAGAAAAGACAGGAAACTTTTGGTGGGCTGTAAGGGAACTTCTTCCTCCTCACCCCCCCCCCCTCACCCAGTCCCCCACCCAATGTTCTTTTCCTGTGTTTTTCTATGAGGGAACTCTTGTACTTCTTTCCTCTTCCCTTTCCTTGTTTCCTTTATTAGTGTGCCGAACCTGGAGTTGCAGTATAGTTGCATCGATGATATGCCCTGGGATTGACCATCAACAATAAATTTGCTGCTAACTTTAAAGTGGTTTAGAGATACTACCCATTTGATTGCACTTAAACCCAAGTAAATGGTCAATAACCTTAAGCTCACAATTTGAATTTTGTTTCTTGGTCTATTTTAAACATATACTCCGTGAAATAGAACAGTGCTTCAAAATAGCAATGACAATGTGGAAAGCAACATTCATGTATTGAATGTGAAGTACTGCCATTGTGTTACTATTGTCAATTGTCATTCTTGTAGTAAGTGAGCTAGAGAGAGAGAGAGAGAGGGGTCTCAATATTGCTAACTTGTCATTTTTTATATTATGCTAGTGTGTCTTTGTCAATGGTTGTTGATTGTAATTTGTATACCATGTTTAATTTGAAATAATCAGACATTCTTCCAATTGTAGGTCAACTGAACATTTGGCTTTTTTCGCCTCTTCCACTGGATGCTTATTTTTTGCAACTGAGTGGTAGTCTGAGATGCATTTCATAAAAAAACTTCCATGAACTTTCTGATTTTTCTGTGCTTTTCTAATTTGGATTAATTGATAACTAGGAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTCCATATGCCAA-GGTTTTGTACACTCCTTCAGCTGAATAAATCTGC</genome_strand>
        <mrna_strand>CAGAACTCCAAGCCCCCACGCCTAGCTAGTTGAAATCAGAAAAAATGCGGTGTCCGTACTGCTCGGCGGAGCAAGGGCGGTGTACCAGCAGCACTAGTGGCAGACCGATAACAGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCCGATCTCCCCACTCTTCCCATCTCCGCCACTAACGACGATGAAGACCCATTTGAACCCACTAGTTTCATCACCGCTTTCTCTACTTGGTCTCTCGAACCCTACCCAGTATTTGCCCAATCCTCCATTTCATTCGCCGGCCACCTTGCAGAGCTCGAGCGGGTCCTCGAAACGACGTCAACTTCCACCAGTTCGTCTTCTTCCTCTGTCGTGGTGGAAAATCTCCGGGCTTATTTGCAGATTATTGATGTGGCTTCTATTCTGCGACTGGATTATGATATTTCGGACCACGCGTTTCAGCTCTTCAGGGATTGTTCTTCGGCGACTTGCTTAAGGAATCGGAGTGTTGAAGCGCTTGCTACTGCTGCTCTTGTGCACGCTATCAGGGAAGCCCAAGAGCCGAGAACTCTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATCAGTTGCAGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTACATATGCCAAGGGTTTTGTACACTCCTTCAGCTGAATAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427371" ref_strand="+" ref_description="SGN-E427371 [STM-48-G18]">
      <seq>cagaactccaagcccccacgcctagctagttgaaatcagaaaaaatgcggtgtccgtactgctcggcggagcaagggcggtgtaccagcagcactagtggcagaccgataacagagtgcacatcctgcggccgggtagtggaggagcgattaacccaatcccaccatctttttcatacccgtgcccaagattctcctctgtgcctggctacttccgatctccccactcttcccatctccgccactaacgacgatgaagacccatttgaacccactagtttcatcaccgctttctctacttggtctctcgaaccctacccagtatttgcccaatcctccatttcattcgccggccaccttgcagagctcgagcgggtcctcgaaacgacgtcaacttccaccagttcgtcttcttcctctgtcgtggtggaaaatctccgggcttatttgcagattattgatgtggcttctattctgcgactggattatgatatttcggaccacgcgtttcagctcttcagggattgttcttcggcgacttgcttaaggaatcggagtgttgaagcgcttgctactgctgctcttgtgcacgctatcagggaaagcccagagccgagaactctccaggaaatatcagttgcagccaatttacctcagaaggaaatcgggaagtacataaagattcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="13699" stop="10867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13399" g_stop="12775" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12774" i_stop="11229" i_length="1546">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11228" g_stop="11167" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="688" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E427371" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13399" e_stop="12775"/>
          <exon e_start="11228" e_stop="11167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACTGCAATTCCCCACGCCTAGCTAGTTGAAATCAG-AAAAATGCGGTGTCCGTACTGCTCGGCGGAGCAAGGGCGGTGTACCAGCAGCACCAGTGGCAGACCGATAACCGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCTGATCTCCCCACTCTTCCCATCTCCGCCACTAACGACGATGAAGACCCATTTGAACCCACTGGTTTCATCACCACTTTCTCTACTTGGTCTCTCGAACCCTACCCAGTATTTGCCCAATCCTCCATTTCATTCGCCGGTCACCTTGCAGAGCTCGAGCGGGTCCTCGAAATGACGTCAACTTCCTCCAGTTCGTCCTCTTCTTCTGTCGTGGTGGAAAATCTCCGGGCTTATTTGCAGATTATTGATGTGGCTTCTATTCTGCGACTGGATTCTGATATTTCGGACCACGCGTTTCAGCTCTTCAGGGATTGTTCTTCAGCAACTTGCTTAAGGAATCGGAGTGTTGAAGCGCTTGCTACTGCTGCTCTTGTGCACGCTATCAGGGAAGCCCAAGAGCCGAGAACTCTCCAGGTATGTTAAATTGGTAAATGGATGCCATAAATACTATGCCAAAAATCTCAATAGCAATAACATATTAGCTAATATTTCAATTCAAAAACTCAAAATAGATAGTACATGTTAAAAGTCTAGAACTTGAATGAGAAAAAAAAAGAATATAAGTCAAAACAGAGGTAGAAGTGACTCTGAAATCTGAGGAAGAACAAGGAAAAGAACTGAGGAAGAAGAAGAAAAGAAGAAATATGTATTGATTGGACTTTGGAGTTGCCAGAGAAGTCTGGCTGGCCGTCGGAGGAGTGTAGTCGAAAACCCTAAATGTACCTTTTAGCTTTTAAAATCCTAAATTTGTCGCCTTTTTTAACGAAAATACAAAATGCGACGCCTTTCTCGCCTCTCGCCTTTGTCGTAATGGCGTCGCCTGTCGAAGATGGCCTCGCCACAAAGCTAAAAAGCAATGAAGGGTCGCCTCGCCTCTCGCCATTGGCGACGAGGCAATCGCCTTTCACAACACTGGTAATTGCAGCTATGTAACTTCGTTTTTCTCAGTGCACCAACTGATTCAGCTGAACCTTTGTGATTGTAGTTTGTTTCGTATTGCTATTTCCTTTCTTGTTCTCTTGTTCAAGCTTATTTCCATCCTAGGGTTTATTCTAATGTTGATAACCTTTTGCCTTCTCCAAACCTCTCTTTTTCACTTACTACTTTTCCTCTTTCTTATCTTAAGTGGAAGATACCCTATATGTAGAAAATCATGGAAGGGAAAAAACAAAGAACAAAGAGGGAAATAGAAGAGAAAAGACAGGAAACTTTTGGTGGGCTGTAAGGGAACTTCTTCCTCCTCACCCCCCCCCCCTCACCCAGTCCCCCACCCAATGTTCTTTTCCTGTGTTTTTCTATGAGGGAACTCTTGTACTTCTTTCCTCTTCCCTTTCCTTGTTTCCTTTATTAGTGTGCCGAACCTGGAGTTGCAGTATAGTTGCATCGATGATATGCCCTGGGATTGACCATCAACAATAAATTTGCTGCTAACTTTAAAGTGGTTTAGAGATACTACCCATTTGATTGCACTTAAACCCAAGTAAATGGTCAATAACCTTAAGCTCACAATTTGAATTTTGTTTCTTGGTCTATTTTAAACATATACTCCGTGAAATAGAACAGTGCTTCAAAATAGCAATGACAATGTGGAAAGCAACATTCATGTATTGAATGTGAAGTACTGCCATTGTGTTACTATTGTCAATTGTCATTCTTGTAGTAAGTGAGCTAGAGAGAGAGAGAGAGAGGGGTCTCAATATTGCTAACTTGTCATTTTTTATATTATGCTAGTGTGTCTTTGTCAATGGTTGTTGATTGTAATTTGTATACCATGTTTAATTTGAAATAATCAGACATTCTTCCAATTGTAGGTCAACTGAACATTTGGCTTTTTTCGCCTCTTCCACTGGATGCTTATTTTTTGCAACTGAGTGGTAGTCTGAGATGCATTTCATAAAAAAACTTCCATGAACTTTCTGATTTTTCTGTGCTTTTCTAATTTGGATTAATTGATAACTAGGAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGG</genome_strand>
        <mrna_strand>CAGAACTCCAAGCCCCCACGCCTAGCTAGTTGAAATCAGAAAAAATGCGGTGTCCGTACTGCTCGGCGGAGCAAGGGCGGTGTACCAGCAGCACTAGTGGCAGACCGATAACAGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCCGATCTCCCCACTCTTCCCATCTCCGCCACTAACGACGATGAAGACCCATTTGAACCCACTAGTTTCATCACCGCTTTCTCTACTTGGTCTCTCGAACCCTACCCAGTATTTGCCCAATCCTCCATTTCATTCGCCGGCCACCTTGCAGAGCTCGAGCGGGTCCTCGAAACGACGTCAACTTCCACCAGTTCGTCTTCTTCCTCTGTCGTGGTGGAAAATCTCCGGGCTTATTTGCAGATTATTGATGTGGCTTCTATTCTGCGACTGGATTATGATATTTCGGACCACGCGTTTCAGCTCTTCAGGGATTGTTCTTCGGCGACTTGCTTAAGGAATCGGAGTGTTGAAGCGCTTGCTACTGCTGCTCTTGTGCACGCTATCAGGGAAAGCCCAGAGCCGAGAACTCTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATCAGTTGCAGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238401" ref_strand="+" ref_description="SGN-E238401 [cLED-17-H21]">
      <seq>gaaaatagattatccaggagaatcccagaatagagatgcaatcaaattcaaataaaccaaacgtacatataaaagggaaaagggaaaaggcaaaaaggaattttatttgttcaaaaaagagaaagaaggaatgagggatgacgatcttcccatatcaacgccaacagcaccttcatcgtcgttcacgacttcgaagaaggaaacttcctattttgccattttcggtagaggtcgttataagttttgggcctttgccgctatctcattgttagctttgtggtctatgttcaccggaactgttaccctccgttggtccgccggtaacctcaacgccatatccgatgacatcgacattcccctccccgaagatcttgacgttctcgaaatggaagaaagggagaagttagtgaagcatatgtgggatgtatacacaaacagccgtgggatcaaattgttaaagttttggcaggaagcatttgaggctgcctatgaggagttagccagtgacgtccctggagtcccagaggatgccctttctgagattgctaagatgtctgtacgctacattcctattgaatcaccacctcttcattcgtcgggaattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="14377" stop="15738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14677" g_stop="15058" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15059" i_stop="15221" i_length="163">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15222" g_stop="15437" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="598" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E238401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14677" e_stop="15058"/>
          <exon e_start="15222" e_stop="15437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATAGATTATCCAGGAGAATCCCAGAATAGAGATGCAATCAAATTCAAATAAACCAAACGTACATATAAAAGGGAAAAGGGAAAAGGCAAAAAGGAATTTTATTTGTTCAAAAAAGAGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACGTTCTCGTCCGTACATTTCCCATTTTCAAACCTTTTGTTTTTTTAATTTATGTCGTCCTATTGGAAATGCTGGGGCTAGTTTGGAATTGAGTGATTGGATTACGTACTTATTAATAAATTGATATTTTTCATTGGTTGATTTTCGGAAATTGTTATGAATTTTTGGCAGGAAATGGAAGAAAGGGAGAAGTTAGTGAAGCATATGTGGGATGTATACACAAACAGCCGTGGGATCAAATTGTTAAAGTTTTGGCAGGAAGCATTTGAGGCTGCCTATGAGGAGTTAGCCAGTGACGTCCCTGGAGTCCCAGAGGATGCCCTTTCTGAGATTGCTAAGATGTCTGTACGCTACATTCCTATTGAATCACCACCTCTTCATTCGTCG</genome_strand>
        <mrna_strand>GAAAATAGATTATCCAGGAGAATCCCAGAATAGAGATGCAATCAAATTCAAATAAACCAAACGTACATATAAAAGGGAAAAGGGAAAAGGCAAAAAGGAATTTTATTTGTTCAAAAAAGAGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACGTTCTC...................................................................................................................................................................GAAATGGAAGAAAGGGAGAAGTTAGTGAAGCATATGTGGGATGTATACACAAACAGCCGTGGGATCAAATTGTTAAAGTTTTGGCAGGAAGCATTTGAGGCTGCCTATGAGGAGTTAGCCAGTGACGTCCCTGGAGTCCCAGAGGATGCCCTTTCTGAGATTGCTAAGATGTCTGTACGCTACATTCCTATTGAATCACCACCTCTTCATTCGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367932" ref_strand="+" ref_description="SGN-E367932 [TUS-22-D9]">
      <seq>gaaaatagattatccaggagaatcccagaatagagatgcaatcaaattcaaataaaccaaacgtacatataaaagggaaaagggaaaaggcaaaaaggaattttatttgttcaaaaaagagaaagaaggaatgagggatgacgatcttcccatatcaacgccaacagcaccttcatcgtcgttcacgacttcgaagaaggaaacttcctattttgccattttcggtagaggtcgttataagttttgggcctttgccgctatctcattgttagctttgtggtctatgttcaccggaactgttaccctccgttggtccgccggtaacctcaacgccatatccgatgacatcgacattcccctccccgaagatcttgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="14377" stop="15353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14677" g_stop="15053" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E367932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14677" e_stop="15053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATAGATTATCCAGGAGAATCCCAGAATAGAGATGCAATCAAATTCAAATAAACCAAACGTACATATAAAAGGGAAAAGGGAAAAGGCAAAAAGGAATTTTATTTGTTCAAAAAAGAGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACG</genome_strand>
        <mrna_strand>GAAAATAGATTATCCAGGAGAATCCCAGAATAGAGATGCAATCAAATTCAAATAAACCAAACGTACATATAAAAGGGAAAAGGGAAAAGGCAAAAAGGAATTTTATTTGTTCAAAAAAGAGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619944" ref_strand="+" ref_description="SGN-E619944 [70639]">
      <seq>cgttaattgagatgaaggatgatgatcttcccatatcaacgccgacggcaccttcatcgtcgttcacgacttccaaaaaggaaacttcatactccgccattttcggtagaggccgttacaagttttgggcttttaccgctatcttattgttagctttctggtctatgctcaccggaactgttactctccgttggtccgccggtaacctcaacgccatatccgatgacatcgacattcccctccccgaagatctcgacgttctggaaatggaagaaagggagaagttagtgaagcatatgtgggatgtatacacaaacagccgtgggatcaaattgctaaagttttggcaggaagcatttgaggctgcctacgaggagttaaccagtgacgttcctggagtccccgaggatgccctttctgagatcgctaagatgtctgtacgctacattcctattgaatcaccacctcttcattcatcgggaatacgtgaattaagtctaaggcaaatgaagagggagcaaacaactgcaacagagagaaagttatgacttggcagaatatcaagaatcccccatttgtgtgatcaccggttttcacatacatgaatgatgattatgccatctgctgtctggttattgcgaaaggcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="14505" stop="19372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14796" g_stop="15058" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15059" i_stop="15221" i_length="163">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15222" g_stop="15437" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="479" r_length="216" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15438" i_stop="18911" i_length="3474">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18912" g_stop="19078" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="648" r_length="169" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E619944" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14796" e_stop="15058"/>
          <exon e_start="15222" e_stop="15437"/>
          <exon e_start="18912" e_stop="19078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACGTTCTCGTCCGTACATTTCCCATTTTCAAACCTTTTGTTTTTTTAATTTATGTCGTCCTATTGGAAATGCTGGGGCTAGTTTGGAATTGAGTGATTGGATTACGTACTTATTAATAAATTGATATTTTTCATTGGTTGATTTTCGGAAATTGTTATGAATTTTTGGCAGGAAATGGAAGAAAGGGAGAAGTTAGTGAAGCATATGTGGGATGTATACACAAACAGCCGTGGGATCAAATTGTTAAAGTTTTGGCAGGAAGCATTTGAGGCTGCCTATGAGGAGTTAGCCAGTGACGTCCCTGGAGTCCCAGAGGATGCCCTTTCTGAGATTGCTAAGATGTCTGTACGCTACATTCCTATTGAATCACCACCTCTTCATTCGTCGGTTAGCTCTCTCTTTCATTTTTGAATCCAATTCTCATGGCGATTTGGGTGTTTTTTAGACAAGCAATAAGCCTCGTAGCGCTCTTGTGATCTTTACCACTGTTAATTGATTGTTACAATGTGAATTGTCATTTTAACGGTGTGCTGATAGAAGCTTTAACAACAATAGCAACCATACTTCAAAGTCTCTGTTTGATTGGGGTTTACTATATAGATTTTTCATTTTTCGTTTTGACTCGATTTGTTCATGTTTCATTTCAATACTCTTATGATTTCTTTGTAAGACAAATTTGCAGCTCTCTAACCCTATTGTATTTATCTTACTTTTATACAAATCTCTAAATGTATATAGAAGATGTCCAGCATACTCCAGACTGTAAGTGTATCAACATTACCAAGTCTTAATCTCGACTAGTTGGCATTGCTCAAATGATCTTTTGCTTTCATTGTGTTTTGCTCTTCACCAAGTCTAGCTAACTTTCTTCCATGTGATTTTAGGATTACCTCATTTCCTTTAAAATAACTTCAATCATTATTTGGTAATGCTGACAGATCAGTGCACTTAAAGATCTACCTAAACTCTTTTATGAATCTTTTCTTTCAAGTGTCCTATTTTAATTCTTAGACTTACTTTTTCATGTATTGCACCATTCTCTTAGATTACTAGGCTAGATCTCTGAATTGTGTGCATTTAGACATCACACCTGTTGAATCTCAACTTCATTTGTGCTGGCAGAGTTTATGTAAAAAAAAATAACTAGAATTTGCTTGTATGTTCCCCTTGTCATCTTTAGTTTCGTTATTTTGGCGATACTATATACTTAGAATGTTGCAAATGCTTCACTTGTCTATCATCACTCATAACAATGAATTTTAAGTAGTTTTTCCTTGAACTTTAAGGTATATGGTAAGTCCAAGTCAAAGGAAACTGAAAAATGCAACATAATTTGGTCTATATTCTTTGCAATGCAACTTTTAGGTAGTTGCCATTTCTTAAACTTTTCACAATCCACTAACTTAATCTGATGGTTGTGTGAGTTTATTATATTTAAGAAGATATCATAATGAACTGAAGCACATTGGGAAGTATACTTTTCTGCTCTTTGGCTCACAACTATCATAATGTCGACTTGGTCAGAAATAATACACTGAGTAGACTGTTCTATTTGGTACTTCTTAGAAAAAACATAATTTGTTTCAGATTAGGTAAGGTAGTATTTGACCTCTACACATTAAATATGAATTTAATACTGAAGTTAGCCATTTTGACTAAAGCATCTCCCTGATTTATTTAATTCTAATCTCCTTGGATGCTAAATCAAATTTACCCAATAAACTGGTATCTGCTGCAATTTCGTAAGTTGACTTTCCTGAGACAGTCGCTATTTCATATATATATATATATATACATGTACACGTAGAGATAGGGGTGGGCATTCGGTATTTCGGTTCGGTTCGGGTTTTTTTTCGGTTTTTAGTTTTTGTAAATTGCGTACCGAATACCGAACCGAAATATTTCGGTTCGGTTCGGTTTTTTAATGGGCCTGTTTAGTGGGCTTTTTAAAATTTTAAACTTAACAATTTTTTCAATTTTTTGTTTGATTTTTCAACTTAATGGACTTTGATATTTCAACTTAGGGTTTCTTATTTTTTTTAAAAAGATTATTTAATATTAATAATTATTAAATATAATATAATTTATAAATTATAATATAATATTTCGGTTTAAACCGAAATACCGAATTCCAAAGTAACATGTACCGAAAACCGAATCGAAATATCAAAAATACAAAAAATTAAACCGAATACCGAACCGAAAACCGAAATACCGAAACCGAAATTCTGAAAAATTTCGATTCGGTTCGGTGTTTTGATTTTCCGGTTTTTATGCCCACCCCTACGTAGAGAGAGAAGTTCCAACTATCCCTAACTGACGCTGGTAGGGAAATTTGGAAATTCTCTCCCACGTCACGCTAGATTATGATTATGGGCTAAAATTCAACAGCTGATGTCACCAGCCCATAATGGAAGATTTTTCACTATTAGTATTGTTATATTATTATTTCTAGTTTTTAAACTTGCACTACTCTTTTTCTTGTTCATTGTTTGCTTCTGGGAAATGCTTTTCTTTTTGTAATGGTGGTGTCCGAGCAAGCTTATGTGTGTCTTGACTTTTCCACAGGGTACCTGCTACCTCCCACCAACATAGGTACCAGGTTGGCTTAGGCAAATGGGAAGCTGGGATTCATACATGATACCTCATTTTCTAATCCCACTTCGCTGACCATTAGGCAATACCCTTGAGTTCCACTTTGGTGCAATGTTAATGCTTACATTCTATTTGCTTCTTAATTTGAGATTTCATTGATTACATTTTATCATTAATGTGGCGATATTCTACAGCCGCAAGTTTACTAGTTTTATGTTCTGTGTTCCTTATGGTTGCTTCCTTCGACTATTTGAAACCATCTAATTGTGGTTTGTTGTGTGGACCCATTCATAGGGAGAAGTGTTCTCAGTAACTAGATTCATGAGTTGTATTTTTAGATAACTTTGATATGAAAACTTATTTTTCTTTCTTCCTTGGCTAGAATTTACCTGCATGTTGACTGTACTTGGCTATTTTGCTATGTTGAACTTTAGCGATTTGCATATGGAAAAGTTTAAAAAAACAGTCCTCCCGTTCCATCTTGCTTATTGAATCACATGATAGTGTAAATCATCTGTTGTTAACTTGTTATTTTCGATAATATTGGTGATAGGTCTACCATTTCTGTCTTTCACTTTTACCATCAACATGAGATGATCTTCTATAATTCGTTTGCTCCAGTCGAAAATTTCTCCTTGTTTACATTGACAAAATACAACTTCCTCGTTGGAGCTGATTGGACCTGATAATAACACAGTTCTCTTTTCGACTTTGATGTGCGTATTCTTGTGTTATTTCTTTGTTTTCTCTGATGAAGCTTATGAAATTTCTTGTTGCTCCATATAAGAGTTGAAGAAAGTTCTCAGTATTTATATATGTATGTAATAAAGAGTTGAAGGGAAGTTCTCTTTGCCTCTTAGAGGGCAGTTTACATGAAATATGCAGTAACTTCCTATTAAGTACACTGTGATAAAATAGTAGCTTTTCTTTCTGCAACTTAATTGGTCAAGTTGGTTGGCGTGAAACACGATAGCCTAACAATATTGTGCCCAAGGTTGGCAGGTGATGGATAATAAGATGTTCCGTTTTTCCTTTCTATAGGCCAATAACTTTGGCTGGAAAAACAACATTCTTTATGGCTGGATCTCTCTCTTTAGCCTCTAACGTGCGCTGATTGTTGCTGCTATTTTGTGTTGTCTTTTGTTAAAAGTTACAGTCAAAGATAACTTTCTTAATTCCACCCAGTTTGCTCTCCTAGATTCTTGTTATGTTGTGATTGTTCCTAATGTTAATGATGCGTTTTGATCCCATTTTAAACTATTTCAGGGAATTCGTGAATTAAGTCTAAGGCAAATGAAGAGGGAGCAAACAACTGCAACAGGGAGAAAGTTATGACTTGG-AGAATATC---AAT-CCCCATTTGTGTGGTCACCGCTTTTCACACACATGAATGATAGATTTATCCCATCTGCTGTCTGGTTATTGTGAAATAGCAT</genome_strand>
        <mrna_strand>CGTTAATTGAGATGAAGGATGATGATCTTCCCATATCAACGCCGACGGCACCTTCATCGTCGTTCACGACTTCCAAAAAGGAAACTTCATACTCCGCCATTTTCGGTAGAGGCCGTTACAAGTTTTGGGCTTTTACCGCTATCTTATTGTTAGCTTTCTGGTCTATGCTCACCGGAACTGTTACTCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTCGACGTTCTG...................................................................................................................................................................GAAATGGAAGAAAGGGAGAAGTTAGTGAAGCATATGTGGGATGTATACACAAACAGCCGTGGGATCAAATTGCTAAAGTTTTGGCAGGAAGCATTTGAGGCTGCCTACGAGGAGTTAACCAGTGACGTTCCTGGAGTCCCCGAGGATGCCCTTTCTGAGATCGCTAAGATGTCTGTACGCTACATTCCTATTGAATCACCACCTCTTCATTCATCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATACGTGAATTAAGTCTAAGGCAAATGAAGAGGGAGCAAACAACTGCAACAGAGAGAAAGTTATGACTTGGCAGAATATCAAGAATCCCCCATTTGTGTGATCACCGGTTTTCACATACATGAATGAT-GA-TTATGCCATCTGCTGTCTGGTTATTGCGAAA-GGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746746" ref_strand="+" ref_description="SGN-E746746 [GI|23429648]">
      <seq>atgggaaaaagtttgaagcttcggttctccagagttattgcttctttcaattcgtgccgttcgaaaaacccttcttctcttccccaaaatcctaatttcttcccacataagctcactagtacaaaacacatttcccccgatttccctcttattgatcaaaatcaaaatcaaaatcaccgtaattacgtgccagaatccacgatgatctccgttgggtgttgtagatcagaattcaagtgggagaaagaagagaagtttcacgtggtttctagttccttcgtgtctgaagaagaagaatgtgaagaggagatcaatttggccttacgacctcctcttacacctccgcgattcagtagaattgttgttgagaagaagaagaagaaacaacagcgagttaaaaaaacgaaaacaaaaagtagaatcatccgaatgagtacttcctcagctgatgagtacagcgggatattaagcggtactaatactgattgggataataatgaagaggaaactgaatctttagtttcatcttccagaagctgttacgatttctcaagcgatgactcatctactgatttcaaccctcacttagaaaccatatgtgagaccactacaatgaggcgtcgtcacaagagaaatgccaacaccaagaggagatcaatcaagcaatccagaccaagtttttcctcttcaaaaggtagaagatcgtcggtttctacgtcatcagatagcgagctaccggcaaggttatcggtgtttaagaagctgataccgtgtagtgtggatgggaaagtgaaggagagtttcgcgatagtgaagaaatctcaggacccgtacgaagatttcaagagatcgatgatggaaatgattttagagaaggaaatgtttgagaagaatgagctggaacagcttttacaatgttttctgtcgttgaacggaaagcattatcatggagtgatagttgaggcgttctcagacatttgggagactttgtttttaggtaataatgatagagtaaggaggatgtcaattcatgatcccacacccacctactgtaggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="28178" stop="30383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28478" g_stop="29171" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29172" i_stop="29718" i_length="547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29719" g_stop="30083" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="1059" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E746746" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1059</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28478" e_stop="29171"/>
          <exon e_start="29719" e_stop="30083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATATGTGAGACCACTACAATGAGGCGTCGTCACAAGAGAAATGCCAACACCAAGAGGAGATCAATCAAGCAATCCAGACCAAGTTTTTCCTCTTCAAAAGGTAAAAGTACTATTTGTGCGATCAAATCTTTTATATTTACAGATAATTTTACAGTCACATTAATAAGTATTGCTTTTCGCGTGTGGAATTTGGAGAGGACAGAGTAAACATAGATCTTATAGCTATTTTGTGGAGAGATTAATTTCAAAAGACACCCAATAACAATAACATATTCAATAAAATTCCACTAACTAGAGTAGAAAAAGGATAGAGTTTACACGGAGCTTACCGTTCAAAAATTCTGGCTCAAAGCAAATGCATATCTTATTTAGAGATCAATAATTTTATTTTAAATATTTTTATCGTCTTTTTCTTTGGGAAATAGTGTATATGTAATTGTCGTACAAAAATATATGAAGCTTAATCAAAATTCATTACATTAATTAAAACGGAAAACTATTTAATTTATAATTATGTCTCAACATGCATGCTTCCTTTGTTACTTGTTTATTATTGGGTCGAATATATGAAAATATATTTTGGAAAGACTTTTGTTGCGCTAGTATTTAAAAAACTAGTACTGATTAATTATATTATGTTTGAACAGGTAGAAGATCGTCGGTTTCTACGTCATCAGATAGCGAGCTACCGGCAAGGTTATCGGTGTTTAAGAAGCTGATACCGTGTAGTGTGGATGGGAAAGTGAAGGAGAGTTTCGCGATAGTGAAGAAATCTCAGGACCCGTACTAAGATTTCAAGAGATCGATGATGGAAATGATTTTAGAGAAGGAAATGTTTGAGAAGAATGAGCTGGAACAGCTTTTACAATGTTTTCTGTCGTTGAACGGAAAGCATTATCATGGAGTGATAGTTGAGGCGTTCTCAGACATTTGGGAGACTTTGTTTTTAGGTAATAATGATAGAGTAAGGAGGATGTCAATTCATGATCCCACACCCACCTACTGTAGGTAG</genome_strand>
        <mrna_strand>ATGGGAAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATATGTGAGACCACTACAATGAGGCGTCGTCACAAGAGAAATGCCAACACCAAGAGGAGATCAATCAAGCAATCCAGACCAAGTTTTTCCTCTTCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGATCGTCGGTTTCTACGTCATCAGATAGCGAGCTACCGGCAAGGTTATCGGTGTTTAAGAAGCTGATACCGTGTAGTGTGGATGGGAAAGTGAAGGAGAGTTTCGCGATAGTGAAGAAATCTCAGGACCCGTACGAAGATTTCAAGAGATCGATGATGGAAATGATTTTAGAGAAGGAAATGTTTGAGAAGAATGAGCTGGAACAGCTTTTACAATGTTTTCTGTCGTTGAACGGAAAGCATTATCATGGAGTGATAGTTGAGGCGTTCTCAGACATTTGGGAGACTTTGTTTTTAGGTAATAATGATAGAGTAAGGAGGATGTCAATTCATGATCCCACACCCACCTACTGTAGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551210" ref_strand="+" ref_description="SGN-E551210 [TUS-55-M8]">
      <seq>cagggaaaaagtttgaagcttcggttctccagagttattgcttctttcaattcgtgccgttcgaaaaacccttcttctcttccccaaaatcctaatttcttcccacataagctcactagtacaaaacacatttcccccgatttccctcttattgatcaaaatcaaaatcaaaatcaccgtaattacgtgccagaatccacgatgatctccgttgggtgttgtagatcagaattcaagtgggagaaagaagagaagtttcacgtggtttctagttccttcgtgtctgaagaagaagaatgtgaagaggagatcaatttggccttacgacctcctcttacacctccgcgattcagtagaattgttgttgagaagaagaagaagaaacaacagcgagttaaaaaaacgaaaacaaaaagtagaatcatccgaatgagtacttcctcagctgatgagtacagcgggatattaagcggtactaatactgattgggataataatgaagaggaaactgaatctttagtttcatcttccagaagctgttacgatttctcaagcgatgactcatctactgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="28180" stop="29353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28478" g_stop="29053" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E551210" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28478" e_stop="29053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTC</genome_strand>
        <mrna_strand>CAGGGAAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262920" ref_strand="+" ref_description="SGN-E262920 [cLEG-59-D2]">
      <seq>aaaaagtttgaagcttcggttctccagagttattgcttctttcaattcgtgccgttcgaaaaacccttcttctcttccccaaaatcctaatttcttcccacataagctcactagtacaaaacacatttcccccgatttccctcttattgatcaaaatcaaaatcaaaatcaccgtaattacgtgccagaatccacgatgatctccgttgggtgttgtagatcagaattcaagtgggagaaagaagagaagtttcacgtggtttctagttccttcgtgtctgaagaagaagaatgtgaagaggagatcaatttggccttacgacctcctcttacacctccgcgattcagtagaattgttgttgagaagaagaagaagaaacaacagcgagttaaaaaaacgaaaacaaaaagtagaatcatccgaatgagtacttcctcagctgatgagtacagcgggatattaagcggtactaatactgattgggataataatgaagaggaaactgaatctttagtttcatcttccagaagctgttacgatttctcaagcgatgactcatctactgatttcaaccctcacttagaaaccatatgtgagaccactacaatgaggcgtcgtcacaagagaaatgccaacaccaagaggagatcaatcaagcaatccagaccaagtttttcctcttcaaaaggtagaagatcgtcggtttctacgtcatcagatagcgagctaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="28183" stop="30063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28483" g_stop="29171" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29172" i_stop="29718" i_length="547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29719" g_stop="29763" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="734" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E262920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28483" e_stop="29171"/>
          <exon e_start="29719" e_stop="29763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATATGTGAGACCACTACAATGAGGCGTCGTCACAAGAGAAATGCCAACACCAAGAGGAGATCAATCAAGCAATCCAGACCAAGTTTTTCCTCTTCAAAAGGTAAAAGTACTATTTGTGCGATCAAATCTTTTATATTTACAGATAATTTTACAGTCACATTAATAAGTATTGCTTTTCGCGTGTGGAATTTGGAGAGGACAGAGTAAACATAGATCTTATAGCTATTTTGTGGAGAGATTAATTTCAAAAGACACCCAATAACAATAACATATTCAATAAAATTCCACTAACTAGAGTAGAAAAAGGATAGAGTTTACACGGAGCTTACCGTTCAAAAATTCTGGCTCAAAGCAAATGCATATCTTATTTAGAGATCAATAATTTTATTTTAAATATTTTTATCGTCTTTTTCTTTGGGAAATAGTGTATATGTAATTGTCGTACAAAAATATATGAAGCTTAATCAAAATTCATTACATTAATTAAAACGGAAAACTATTTAATTTATAATTATGTCTCAACATGCATGCTTCCTTTGTTACTTGTTTATTATTGGGTCGAATATATGAAAATATATTTTGGAAAGACTTTTGTTGCGCTAGTATTTAAAAAACTAGTACTGATTAATTATATTATGTTTGAACAGGTAGAAGATCGTCGGTTTCTACGTCATCAGATAGCGAGCTACCGG</genome_strand>
        <mrna_strand>AAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATATGTGAGACCACTACAATGAGGCGTCGTCACAAGAGAAATGCCAACACCAAGAGGAGATCAATCAAGCAATCCAGACCAAGTTTTTCCTCTTCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGATCGTCGGTTTCTACGTCATCAGATAGCGAGCTACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258479" ref_strand="+" ref_description="SGN-E258479 [cLEG-47-J10]">
      <seq>aaaaagtttgaagcttcggttctccagagttattgcttctttcaattcgtgccgttcgaaaaacccttcttctcttccccaaaatcctaatttcttcccacataagctcactagtacaaaacacatttcccccgatttccctcttattgatcaaaatcaaaatcaaaatcaccgtaattacgtgccagaatccacgatgatctccgttgggtgttgtagatcagaattcaagtgggagaaagaagagaagtttcacgtggtttctagttccttcgtgtctgaagaagaagaatgtgaagaggagatcaatttggccttacgacctcctcttacacctccgcgattcagtagaattgttgttgagaagaagaagaagaaacaacagcgagttaaaaaaacgaaaacaaaaagtagaatcatccgaatgagtacttcctcagctgatgagtacagcgggatattaagcggtactaatactgattgggataataatgaagaggaaactgaatctttagtttcatcttccagaagctgttacgatttctcaagcgatgactcatctactgatttcaaccctcacttagaaaccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="28183" stop="29375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28483" g_stop="29075" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E258479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28483" e_stop="29075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATAT</genome_strand>
        <mrna_strand>AAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261109" ref_strand="+" ref_description="SGN-E261109 [cLEG-65-K22]">
      <seq>aaaaagtttgaagcttcggttctccagagttattgcttctttcaattcgtgccgttcgaaaaacccttcttctcttccccaaaatcctaatttcttcccacataagctcactagtacaaaacacatttcccccgatttccctcttattgatcaaaatcaaaatcaaaatcaccgtaattacgtgccagaatccacgatgatctccgttgggtgttgtagatcagaattcaagtgggagaaagaagagaagtttcacgtggtttctagttccttcgtgtctgaagaagaagaatgtgaagaggagatcaatttggccttacgacctcctcttacacctccgcgattcagtagaattgttgttgagaagaagaagaagaaaccacngcgagttaaaaaaacgaaaacaaaaagtagaatcatccgaatgagtacttcctcagctgatgagtacagcgggatattaagcgggactaatactgattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="28183" stop="29266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28483" g_stop="28966" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E261109" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28483" e_stop="28966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGG</genome_strand>
        <mrna_strand>AAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACCACNGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGGACTAATACTGATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689027" ref_strand="+" ref_description="SGN-E689027 [t3_tus_55_M08]">
      <seq>aaagtttgaagcttcggttctccagagttattgcttctttcaattcgtgccgttcgaaaaacccttcttctcttccccaaaatcctaatttcttcccacataagctcactagtacaaaacacatttcccccgatttccctcttattgatcaaaatcaaaatcaaaatcaccgtaattacgtgccagaatccacgatgatctccgttgggtgttgtagatcagaattcaagtgggagaaagaagagaagtttcacgtggtttctagttccttcgtgtctgaagaagaagaatgtgaagaggagatcaatttggccttacgacctcctcttacacctccgcgattcagtagaattgttgttgagaagaagaagaagaaacaacagcgagttaaaaaaacgaaaacaaaaagtagaatcatccgaatgagtacttcctcagctgatgagtacagcgggatattaagcggtactaatactgattgggataataatgaagaggaaactgaatctttagtttcatcttccagaagctgttacgatttctcaagcgatgactcatctactgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="28185" stop="29353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28485" g_stop="29053" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E689027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28485" e_stop="29053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTC</genome_strand>
        <mrna_strand>AAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222166" ref_strand="+" ref_description="SGN-E222166 [cLEL-16-C16](-)">
      <seq>tttcttccatcaggaagtattctgacttgcctaaggctgcacccgagtatgtagaaaggataaaggagcttgttggggtacctatccattacattggtataggacctggtcgtaatgcccttatctccaagtgattttagatttttatcatcatattgccagagtcatattcttcaaattgttggtaaaccttagactaagcttgtagtaacatcatgaattatcattttgatgttattgcttaacgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="39179" stop="25628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38879" g_stop="38634" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38633" i_stop="33947" i_length="4687">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.372" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33946" g_stop="33914" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="278" r_length="32" r_score="0.697"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33913" i_stop="33484" i_length="430">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.011" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33483" g_stop="33471" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="291" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E222166" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38879" e_stop="38634"/>
          <exon e_start="33946" e_stop="33914"/>
          <exon e_start="33483" e_stop="33471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAGGAAAAGTCAGTTAAGAATGCCAATGATCAAGGTTTCCGTTTAGCTTGTCCAAGTCTGCTAACATCAGCAAATATCCTCCCACCCCTAAAGAACAGGGGATTGATTACCCAGGAGTGGTTTAAAAGGTTTCCCCTCTAGTTGGTGATGATTTTGATTCTAGTAAGATGGTGCATACAAGCAGCTACCATAAATCTAGTCGTATTAGACCTATTAAAATAGTTCAGTATTTTCAGAAGTTCCATAGTGAAGAGGGAAATATAAGCACATCATTTACATTGTAAGCATCTACAAATCTACTAGCCTCTGCTGCTGCCTCGTGATGTGATCTTCTGTACCCGTTATTGCACCTAGTGCGTCTTATCTGTAACTTGTTGTATCAGCAAAGAAACATTGTCATCTTTCAGTAAAACTCCACACTCTGAAACAACTGATTTACAATCATGACCTCTATGAGGCTGTTGATCATCTCTTTTCAGTATTCAAATCTGTTGAAGAAATCCATTAAGATCAATCTGAGGCTTCTCTTGATCATGACGAGAATTTGACTTCCTTTTTCTCCTCCACATGTGGAATTGTTAAGTGGCGTTTGTTTGGTTTTGTTTTGTATTCCTCTTTTCCCTTGAGTTGTTGAAGTCTTTGGTGAACATTAGGCTTGAGCACTTTTAAGTTTAGCCAGCCAGTGCTATTAGGGAATACTGATGAAACAAAGTTGTTGCTGGAAGTGAACCATTAGAACTTGTGTGATCTGTTCAATGGATTGAAATTAGCTCTCATATGGGGTAAATTAAGGTAAGACAGCAACTTCTTCTGCTGTAGCAAAAGATCCTAACCACAGCCAACTTCACGTCTTTGGCTCTTTGATTTTGGCCTTGCGTTAAACGCGTTCTGAGGGTCACCTTTTCCTCTCGAAGGGCCCTTCTTCCATGGTTTTAGTGGATTTCTTTTTTAGCTTTTCATGTCCGCAAACCAACGTCCATGTAAAAAACTTGAGAGTTTGTTTGGTACGGTAGATAGTAGGTTTTGGATTCGAGCATTACTAGGTACAAAGTTACCAAATGTATCCAAGAATGGTTTGACAAAACCAAGGGCCTTAATGGCTTTTCTCGTTTAATTCGATCCTTTTTCAGTTTGTTGCTTTGGGTAAATTCAGAACACATCTGAATATGTTTTTTCTAAAAGAAAATATATTACAGCCTTTTACCAATCTTTCTTGATTATTTTCAAAAATCCCAAAATAATATATTCCAAAATACTTACCAATTTTGGAAAAAAAATATATATTATAGTAAATCAATACGGAGATCTCCATACAAACTACGAAAAAAACTTCTTTTTGAACTATTATAGCTATATTACCCCAAATCTTCTTGTACTAACCGAAATCGGCAGACGGCAAATACTTACCAACTTTCAAGGTAAAATATACTTCCCTCGCGCACTTTTCTTTTTAATCGGATCTTTAAAAACACATTTTTTAATTTGACAAATATTTAGTAACGCTATCGACATTTTAATGATGTTGAATCTCATTTATTTGGCTAAAATTTACAAAATGTATACTCGTCTATTTGAAAATTCATTTTTGATTTGCTGCAAAGTTTTTTCATATTCTTAAAATTTTATATTCAGTTAAACAATCTCACATAATGCAAAGTCTTTTCATATTTTTTAAAATTTTGTGTCAGATCAAACAATCTCTTAGAAAACATTTGTTTAATCGTTTAAAAGGTTTTTCCCCCTTGACATCCCTCTTGGGTTTTGAATAGTATAAAGAAGAGAACTGTGAAGTTGCACTTTATTGATCTCCAACTCTGATCACGATGCATAAAGCAAAGATTTTGGATTTGCACAATCAATAGTAAAGTATAAGTAGGTAGCAGCAGTAATATGAATTGATGGAATATGAAAACCACTAACTGTAAAATAAAAAAAGTTATGCTTCATTTAACAAGTTGCCCCTCCGTTTTAGGCCTACTTTCTTGATTAAAGGTTTGAAAAAAAATCTCTGATGCCTTGTATCAGTGTATTTATCAACAATTGAGGAAACTTGAATTGTTCAGAGCCCAAAGGTCGAAGAATTTATAGTAATCATGAAAAAGGTGGTGCCTTTATCCCATATTCATGCAGCTAACGTATTTTTAATCTAAATTCTACACCACTTTTGCTGCTCGCATGGGCAAGTAGATCGATTCGGAATTGAATGGTAATGGCATAAACTGATTTTTTTTTTCTTCCATTTTTTAGTATAGGGAAAAGACTTAAATATGTCAACAAACTTTCAGAAAAGGTTCATTGTTAAAAGTTTGGCTCATCTATGCCATTACCATTCAAGAAAAAACTCATTCATACCATTGTTTTATAATAGAGGTTTTGCAAAACAATTTTTGATACATGACCAATTATAATTCGCCACATCATCAATTTTTTAATAAAAAAATTAGTTCAATTTGAGTCTTTTTCCCTTAAAGTAAAAAGGTATTAAATCTAAAAAGGGTAATATTTTAAAAAAGTAAAATTATATAGAAAAAATCTCAGTCTAGACAAATTCTCGATAAATTTTCTAGATAAAATCTTTTTTCCTTTTATCTTAATAAAATTTTTGAGTTCTGGAAAGGTGAGTTATGCATGTACTAAATATAATATATATAATGCTCCCTCCGTTTATTTTAATGTTTTTTCTTAAAGTTACTATAAAACTTTGATTAACGTTTATGAAAAGAAAATTGTTATTTATAAGACTTTTCATATAGTTTTAAAATATTTAAATTTTTAATTTAAAATATCGAATTAATTTAACCTTATTTTACTTTAAATATTAGTCAAATTGACTTCGTAAAAACGAATATGACAATTAAAAATGGAATGAAAGTGTATCATGTCTAGTAATTGATTGGGAGATAAATTATTCATGTATAAAATTACTATTATGTTTAATTTGGAATATAGAAACCCATTAATCTATAGTATATAAGTTTATGCAAAATAGAAGTTGATATAAACAATACTAGAATAACTAAACTCATTTTAACAAATTATGACATAAAATAATACGTAGATATCTAACTACCCAGCAACAAATAATAATTTGATTAAAACTTCATATCGAGTTCGACCAATCCATGATGAAAACTCTATCCGGCCTAGGTCAGGGACTCAGGCACGCGTTAAAATATTTATACAAGTTAACAGAGAGATCTCAGATATTACATTTCATTGCATACGAAAAAAGTATATTTACAGTTTATCCTGTCACTTCCAGTTTATGTAATAAAAAAATTTTAAATTTGCTTGCTGTAGTACTCCCTAGAAATCTTTTTGTCTTATGCTAGCTAGCTCTTCTTTTATGTCAAAAAAAGTTTGTTTTAGTTCGTTTCGATAACATTAAATAATGTTTTTCCTTTTTGTCATTTTTAAATTCAACTTTTCCTTAATATATTTAAGATAAAAAATTAAAAAAATAATTTAATATATATATATATATATATTATAATTTTTAGTTTGTAGAGGTGTATGTTTCCAAATATCATGATTCGCGACCATCTACACATCCTCCTTAGCTATTAATTGTCATAACTATTTAATTAACTGCTTTCTAATAAATAATTTTTTTATTTGACAAATAATTAATTTAATTGGAGATGACATGAAAAGCTGGTCTATAGACTGAGTTAGTTACCACATTGGTAGCACTTATTAAGGAAATTAGATAATTTTGGTCATGTGTGCATGGACTTAATATTTATCTTATTAGTTGTTATGTATTTCATTCATAAATTAGTCTTATATATTATATTAATCTAGCTTATTGCTATTATATTTTTATCATTTTTGTTATTTGAAATTGACTTTTAAAAAAATAAAATTGAATGATGTGCATCTAAATAATGTCATAGCAACACCATTGTTTCATTTTCCACAAAATGAGAAAGAAGTTTCACAAAGAGTAAAAAATAACATCAATTTATATTCATAGCTAAATATAACTGTATTAGTTTTTAAACAACATATTTCACTTTTAAATGAAAGAACTTTCAAATACTTAAAAAAGTTTAAAAAAACAAAACTACATCTTTCAAATATAACAATGGAATATTGCTGAACAACCACTAAAATCATTTTCAACAATGTTGATTTCACTAACTCTCTAGCACGAATATCCTCAAATAACAATCTAATGAGGTTTTATGACCTTCTGTTATTTGTTTGTAAGATCCATGATTCCTTTTTCCGCCATATCCAATCGATAATGTTATTCTAAAAGCTTCATATGTAAATCTTTTCTTTGCAATTTGTAGTTTCTTAATTTAATTATATTTTATTATCGAAACAACTTAGGCTCCAATAATTTGAAGGAACAACTAACCATAAAGGTGAAACAACAATCTCAATACAATAATCTAAGAAAACAACAATAACATGCGTCCTATAAGAGCTTATATTAGACTTCTTCTTTGTGAAAGATATCAAAATTGAGCTCCACATATAAGAACAATCAACTCATGCAAATCAAATTAAATGGAGATAAAATTATTTTTTGTTTCATCTAAAATTTAAAGTTATGGAGTGAATTGAAGAAAAATTACACAAATGCAATTGTGAAAAAATTAAATGCAATGATCCATTAATATTAGGATCAGAAACAACAAATTCAAAGAAATAAGAAAGTAAAATAAAATTAAACAATACCTTATAAAAAATTTATAACAATTAAGAATTAAGAATTGAAGCTTTAAACGGTCTATTATCTTTGTTTGATGTTATTTTTTTGAAGAGAGAACAATAGCTTTGAAGTTGGTATGAGGAGATGCATATGAGATAAGATGAATGTATGATGTTTTACTGTCGAAATACGTTTGCTATAGTATATGAAAGTAAAAAATGCCCTCAATTTGAATTTTAAAGACCAAAAACTAATATATTGATACGGCTACATTATCCACATTTTTATAATAGTAGAATGTCATTCTTATTTATTTTCTTTTTACACGTGAAAAATTTGATATTAAATTTTTTTTCTTGTAAGGCTTTTAAAGCCTAACGAGTTATATTTTTTTAAAAAAAGGGGTTAAAATTGTCCTTGACCTATTGGAAAAGGTAAAAAAAAAAA</genome_strand>
        <mrna_strand>TTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACCCGAGTATGTAGAAAGGATAAAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTAATGCCCTTATCTCCAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539416" ref_strand="-" ref_description="SGN-E539416 [TUS-59-C15]">
      <seq>acatacccttttgtgacttcatccagtccatcggctgtggaatctgcacaggtctnggcattgctcccaaagttgtnggtgatcttgttggtgtggttaaggcatataccacaagagttggttctggtccttttccaacagaaatcatgggcaaaggtggtgaccttcttcgttttgctgggcaggagtttggcacaaccactggacgtccgcgtcgttgtggttggctagacatagttgcgctgaaattctgctgtcaaataaatggatttgcttctcttaaccttacaaaactagacgtgctgtcagatctaccagaaattcaattgggtgttacttacaggcatcctgatggctcagcattacattcttttccctctgatcttcgtcttcttgagcaaataaaggtggagtatgaagttttgcctgggtggaagagtgatatttcttccatcaggaagtattctgacttgcctaaggctgcacgcgagtatgtagaaaggatagaggagcttgttggggtacctatccattacattggtataggacctggtcgtgatgcccttatctacaagtgattttagatttttatcatcatattgccagagtcatattcttcaaattgttggtaaaccttagactaagcttgtagtaacatcatgaattatcattttgatgttattgcttaatgtaaaaattatgtctctgttgtctttaaagctagaaattttgttagacctcccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40346" stop="38274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40046" g_stop="39951" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39330" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="407" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38916" g_stop="38574" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="750" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E539416" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539416" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40046" e_stop="39951"/>
          <exon e_start="39641" e_stop="39330"/>
          <exon e_start="38916" e_stop="38574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAGGTAAGTTTCTTTTATCTTTCTTTCTTCTTTCAACATCCTTTTGCATGATATTGTGGTGTTTGGAAATCCAGATTATTAGTTTCAACTTCATGGGGAAATTGAGCTGTATTAACACATTGTGTCACTGAAAAGCATAGATCATTGAAGTTTCATTTGTGAGGAGTTAACTTTTGTTTGATTTCCTTTACCCTGTTATTGAGAGATGAAAAAAACTAAGTTTTCTGATTTTTTTGGTACTTCTTTGTTCTTTCAGTCTGTCGTTTTCTCCCATGTATCTTGATTTTTTCCTATTTTTTGTTCATATCTGGAGACCTTCATTATGCATATTGAATCTTTTTCCCTCCTGTTGTGTGTCTTAATACCATTTTGTACTTTCCTGTATTTTGACTTCTATTATTTATCATCTACATCAGGTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAGGAAA</genome_strand>
        <mrna_strand>ACATACCCTTTTGTGACTTCATCCAGTCCATCGGCT-GTGGAATCTGCACAGGTCTNGGCATTGCTCCCAAAGTTGTNGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284434" ref_strand="-" ref_description="SGN-E284434 [cLER-16-J17]">
      <seq>cgttttgctgggcaggagtttggcacaaccactggacgtccgcgtcgttgtggttggctagacatagttgcgctgaaattctgctgtcaaataaatggatttgcttctcttaaccttacaaaactagacgtgctgtcagatctaccagaaattcaattgggtgttacttacaggcatcctgatggctcagcattacattcttttccctctgatcttcgtcttcttgagcaaataaaggtggagtatgaagttttgcctgggtggaagagtgatatttcttccatcaggaagtattctgacttgcctaaggctgcacgcgagtatgtagaaaggatagaggagcttgttggggtacctatccattacattggtataggacctggtcgtgatgcccttatctacaagtgattttagatttttatcatcatattgccagagtcatattcttcaaattgttggtaaaccttagactaagcttgtagtaacatcatgaattatcattttgatgttattgcttaatgtaaaaattatgtctctgttgtctttaaagctagaaattttgttagacctcccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="39866" stop="38275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39566" g_stop="39330" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38916" g_stop="38575" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="579" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E284434" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284434" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39566" e_stop="39330"/>
          <exon e_start="38916" e_stop="38575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAGGTAAGTTTCTTTTATCTTTCTTTCTTCTTTCAACATCCTTTTGCATGATATTGTGGTGTTTGGAAATCCAGATTATTAGTTTCAACTTCATGGGGAAATTGAGCTGTATTAACACATTGTGTCACTGAAAAGCATAGATCATTGAAGTTTCATTTGTGAGGAGTTAACTTTTGTTTGATTTCCTTTACCCTGTTATTGAGAGATGAAAAAAACTAAGTTTTCTGATTTTTTTGGTACTTCTTTGTTCTTTCAGTCTGTCGTTTTCTCCCATGTATCTTGATTTTTTCCTATTTTTTGTTCATATCTGGAGACCTTCATTATGCATATTGAATCTTTTTCCCTCCTGTTGTGTGTCTTAATACCATTTTGTACTTTCCTGTATTTTGACTTCTATTATTTATCATCTACATCAGGTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAGGAA</genome_strand>
        <mrna_strand>CGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450579" ref_strand="-" ref_description="SGN-E450579 [cSTS-9-D2]">
      <seq>cttcatccagtccatcggctggtggaatctgcacaggtcttggcattgctcccagagttgttggtgatcttgttggtgtggttaaggcatataccacaagagttggttctggtccttttccaacagaaatcatgggcaaaggtggtgaccttcttcgttttgctgggcaggagtttggcacaactactggacgtccgcgtcgctgtggttggctagacatagttgcactgagattctgctgtcaaataaatggatttgcttctcttaacctaacaaaactagatgtgctgtcagatctaccagaaattcaattgggtgttacttacaggcatcccgatggctcagcattaaattcttttccctctgatcttcgtcttcttgagcaaataaaggtggagtatgaagttttgcctgggtggaagagtgatatttcttccatcaggaagtatactgacttgcctaaggctgcacgtgagtatgtagaaaggatagaggagcttgttggggtccctatccattacattggtataggacctggtcgcgatgctcttatctacaagtgatttagattttttcattatattgccagaatcatattcttcaaattgctggtaaaccttagactaagcttgtagtaacatcatgaattatcattttgatgtcattgcttactgtaaaaattatgtatttgttgtctttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40330" stop="38305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40030" g_stop="39951" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39330" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="392" r_length="312" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38916" g_stop="38601" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="706" r_length="314" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E450579" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450579" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40030" e_stop="39951"/>
          <exon e_start="39641" e_stop="39330"/>
          <exon e_start="38916" e_stop="38601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAGGTAAGTTTCTTTTATCTTTCTTTCTTCTTTCAACATCCTTTTGCATGATATTGTGGTGTTTGGAAATCCAGATTATTAGTTTCAACTTCATGGGGAAATTGAGCTGTATTAACACATTGTGTCACTGAAAAGCATAGATCATTGAAGTTTCATTTGTGAGGAGTTAACTTTTGTTTGATTTCCTTTACCCTGTTATTGAGAGATGAAAAAAACTAAGTTTTCTGATTTTTTTGGTACTTCTTTGTTCTTTCAGTCTGTCGTTTTCTCCCATGTATCTTGATTTTTTCCTATTTTTTGTTCATATCTGGAGACCTTCATTATGCATATTGAATCTTTTTCCCTCCTGTTGTGTGTCTTAATACCATTTTGTACTTTCCTGTATTTTGACTTCTATTATTTATCATCTACATCAGGTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTA</genome_strand>
        <mrna_strand>CTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAGAGTTGTTGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACTACTGGACGTCCGCGTCGCTGTGGTTGGCTAGACATAGTTGCACTGAGATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTAACAAAACTAGATGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCCGATGGCTCAGCATTAAATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATACTGACTTGCCTAAGGCTGCACGTGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTCCCTATCCATTACATTGGTATAGGACCTGGTCGCGATGCTCTTATCTACAAGTGA-TTTAGATTTTT-TCATTATATTGCCAGAATCATATTCTTCAAATTGCTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTCATTGCTTACTGTAAAAATTATGTATTTGTTGTCTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217414" ref_strand="+" ref_description="SGN-E217414 [cLEL-21-J23](-)">
      <seq>gagtaatatttcttccatcaggaagtattctgacttgcctaagactgcacgcgagtatgtagaaaggatagaggagcttgttcgggtacctatccattacattggtataggtcctggtcgtgatgcccttatctacaagtgattttagatttttatcatcatattgccagagtcatattcttcaaattgttggtaaaccttagactaagcttgtagtagcatcatgaattatcattttgatgatattgcttaatgtaaaaattatgtctctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="39187" stop="38315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38887" g_stop="38615" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E217414" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38887" e_stop="38615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGT</genome_strand>
        <mrna_strand>GAGTAATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGACTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTCGGGTACCTATCCATTACATTGGTATAGGTCCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAGCATCATGAATTATCATTTTGATGATATTGCTTAATGTAAAAATTATGTCTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605780" ref_strand="-" ref_description="SGN-E605780 [21709]">
      <seq>ttggatatcgatttttggaacaaacccttttgtgacttcatccagtccatcggcctggtggaatctgcacaggtcttggcattgctcccagagttgttggtgatcttgttggtgtggttaaggcatataccacaagagttggttctggtccttttccaacagaaatcatgggcaaaggtggtgaccttcttcgttttgctgggcaggagtttggcacaactactggacgtccgcgtcgctgtggttggctagacatagttgcactgagattctgctgtcaaataaatggatttgcttctcttaacctaacaaaactagatgtgctgtcagatctaccagaaattcaattgggtgttacttacaggcatcccgatggctcagcattaaattcttttccctctgatcttcgtcttcttgagcaaataaaggtggagtatgaagttttgcctgggtggaagagtgatatttcttccatcaggaagtatactgacttgcctaaggctgcacgtgagtatgtagaaaggatagaggagcttgttggggtccctatccattacattggtataggacctggtcgcgatgctcttatctacaagtgatttagattttttcattatattgccagaatcatattcttcaaattgctggtaaaccttagactaagcttgtagtaacatcatgaattatcattttgatgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40364" stop="38342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40064" g_stop="39951" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39330" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="428" r_length="312" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38916" g_stop="38642" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="701" r_length="273" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E605780" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40064" e_stop="39951"/>
          <exon e_start="39641" e_stop="39330"/>
          <exon e_start="38916" e_stop="38642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATATAGA-TTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGG-CTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAGGTAAGTTTCTTTTATCTTTCTTTCTTCTTTCAACATCCTTTTGCATGATATTGTGGTGTTTGGAAATCCAGATTATTAGTTTCAACTTCATGGGGAAATTGAGCTGTATTAACACATTGTGTCACTGAAAAGCATAGATCATTGAAGTTTCATTTGTGAGGAGTTAACTTTTGTTTGATTTCCTTTACCCTGTTATTGAGAGATGAAAAAAACTAAGTTTTCTGATTTTTTTGGTACTTCTTTGTTCTTTCAGTCTGTCGTTTTCTCCCATGTATCTTGATTTTTTCCTATTTTTTGTTCATATCTGGAGACCTTCATTATGCATATTGAATCTTTTTCCCTCCTGTTGTGTGTCTTAATACCATTTTGTACTTTCCTGTATTTTGACTTCTATTATTTATCATCTACATCAGGTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTAT</genome_strand>
        <mrna_strand>TTGGATATCGATTTTTGGAACAAACCCTTTTGTGACTTCATCCAGTCCATCGGCCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAGAGTTGTTGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACTACTGGACGTCCGCGTCGCTGTGGTTGGCTAGACATAGTTGCACTGAGATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTAACAAAACTAGATGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCCGATGGCTCAGCATTAAATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATACTGACTTGCCTAAGGCTGCACGTGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTCCCTATCCATTACATTGGTATAGGACCTGGTCGCGATGCTCTTATCTACAAGTGA-TTTAGATTTTT-TCATTATATTGCCAGAATCATATTCTTCAAATTGCTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474825" ref_strand="+" ref_description="SGN-E474825 [cSTB-38-G19]">
      <seq>cttggaattgctcccagagttgtcggtgatcttgttggtgtggttaaggcatatacgacaagagttggttctggtcctttcccaacagaactcatgggcaaaagtggtgatcttcttcgttctgctgggcaggagtttggcacaactactggacgccctcgtcgctgtggttggctagacatagttgcactgagatactgctgtcaaataaatggatttgcttctctaaacctaacaaaactagatgtgctgtcaaatctatcagaaattcagttgggtgttacttacaggcatcctgatggttcaacattaaattcttttccttctgatctaactcttctcgaacaaataaaagtggaatatgaagttatgcctggatggcagactgatatttcttccatcaggaagtattctgacttgcccaaggctgcatgcgagtatgtagaaaggatagaggagcttgttggggtacctatccactacattggtattgggcctggtcgtgacgcccttatctacaagtgattttagatactttcgtcatattaccagaatcatgttcttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40292" stop="38402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39992" g_stop="39951" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39330" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="354" r_length="312" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38916" g_stop="38702" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="568" r_length="214" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E474825" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39992" e_stop="39951"/>
          <exon e_start="39641" e_stop="39330"/>
          <exon e_start="38916" e_stop="38702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAGGTAAGTTTCTTTTATCTTTCTTTCTTCTTTCAACATCCTTTTGCATGATATTGTGGTGTTTGGAAATCCAGATTATTAGTTTCAACTTCATGGGGAAATTGAGCTGTATTAACACATTGTGTCACTGAAAAGCATAGATCATTGAAGTTTCATTTGTGAGGAGTTAACTTTTGTTTGATTTCCTTTACCCTGTTATTGAGAGATGAAAAAAACTAAGTTTTCTGATTTTTTTGGTACTTCTTTGTTCTTTCAGTCTGTCGTTTTCTCCCATGTATCTTGATTTTTTCCTATTTTTTGTTCATATCTGGAGACCTTCATTATGCATATTGAATCTTTTTCCCTCCTGTTGTGTGTCTTAATACCATTTTGTACTTTCCTGTATTTTGACTTCTATTATTTATCATCTACATCAGGTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAA</genome_strand>
        <mrna_strand>CTTGGAATTGCTCCCAGAGTTGTCGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACGACAAGAGTTGGTTCTGGTCCTTTCCCAACAGAACTCATGGGCAAAAGTGGTGATCTTCTTCGTTCTGCTGGGCAGGAGTTTGGCACAACTACTGGACGCCCTCGTCGCTGTGGTTGGCTAGACATAGTTGCACTGAGATACTGCTGTCAAATAAATGGATTTGCTTCTCTAAACCTAACAAAACTAGATGTGCTGTCAAATCTATCAGAAATTCAGTTGGGTGTTACTTACAGGCATCCTGATGGTTCAACATTAAATTCTTTTCCTTCTGATCTAACTCTTCTCGAACAAATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATATGAAGTTATGCCTGGATGGCAGACTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCCAAGGCTGCATGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCACTACATTGGTATTGGGCCTGGTCGTGACGCCCTTATCTACAAGTGATTTTAGATACTT-TCGTCATATTACCAGAATCATGTTCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588852" ref_strand="+" ref_description="SGN-E588852 [42414]">
      <seq>ccccgggctgcattgtcaagcaaggttattcgaaatggcataagggtaagtgatttaaggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgcttcaagattccaaggttttaagtatagccctgacatgctcagggaggaagtggaacgctataagaaatttgctgagaggttggaacctttcgttacagataccgtgcacttcttgaatgatgctatatctcagaaaaagaagattttggtagaaggtggtcaggcaactatgctggatatcgattttgggacatatccttttgtcacttcatccagtccatcagctggcggaatctgcacaggtcttggaattgctcccagagttgtcggtgatcttgttggtgtggttaaggcatatacgacaagagttggttctggtcctttcccaacagaactcatgggcaaaggtggtgatgttcttcgttctgctgggcaggagtttggcacaactactggacgccctcgtcgctgtggttggctagacatagttgcactgagatactgctgtcaaataaatggatttgcttctctaaacctgacaaaactagatgtgctgtcagatctatcagaaattcagttgggtgttacttacaggcatcctgatggttcaacattaaattcttttccttctgatctaactcttctcgaacaaataaaagtggaatatgaagttatgcctggatggaagactgatatttcttccatcaggaagtattctgacttgcccaaggctgcatgcgagtatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40643" stop="38526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40326" g_stop="39951" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="396" r_length="376" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39330" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="708" r_length="312" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38916" g_stop="38826" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="799" r_length="91" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E588852" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40326" e_stop="39951"/>
          <exon e_start="39641" e_stop="39330"/>
          <exon e_start="38916" e_stop="38826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAGGTAAGTTTCTTTTATCTTTCTTTCTTCTTTCAACATCCTTTTGCATGATATTGTGGTGTTTGGAAATCCAGATTATTAGTTTCAACTTCATGGGGAAATTGAGCTGTATTAACACATTGTGTCACTGAAAAGCATAGATCATTGAAGTTTCATTTGTGAGGAGTTAACTTTTGTTTGATTTCCTTTACCCTGTTATTGAGAGATGAAAAAAACTAAGTTTTCTGATTTTTTTGGTACTTCTTTGTTCTTTCAGTCTGTCGTTTTCTCCCATGTATCTTGATTTTTTCCTATTTTTTGTTCATATCTGGAGACCTTCATTATGCATATTGAATCTTTTTCCCTCCTGTTGTGTGTCTTAATACCATTTTGTACTTTCCTGTATTTTGACTTCTATTATTTATCATCTACATCAGGTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAG</genome_strand>
        <mrna_strand>CAAGGTTATTCGAAATGGCATAAGGGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTTCAAGATTCCAAGGTTTTAAGTATAGCCCTGACATGCTCAGGGAGGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCTTTCGTTACAGATACCGTGCACTTCTTGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTAGAAGGTGGTCAGGCAACTATGCTGGATATCGATTTTGGGACATATCCTTTTGTCACTTCATCCAGTCCATCAGCTGGCGGAATCTGCACAGGTCTTGGAATTGCTCCCAGAGTTGTCGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACGACAAGAGTTGGTTCTGGTCCTTTCCCAACAGAACTCATGGGCAAAGGTGGTGATGTTCTTCGTTCTGCTGGGCAGGAGTTTGGCACAACTACTGGACGCCCTCGTCGCTGTGGTTGGCTAGACATAGTTGCACTGAGATACTGCTGTCAAATAAATGGATTTGCTTCTCTAAACCTGACAAAACTAGATGTGCTGTCAGATCTATCAGAAATTCAGTTGGGTGTTACTTACAGGCATCCTGATGGTTCAACATTAAATTCTTTTCCTTCTGATCTAACTCTTCTCGAACAAATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATATGAAGTTATGCCTGGATGGAAGACTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCCAAGGCTGCATGCGAGTATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407174" ref_strand="+" ref_description="SGN-E407174 [PPI-6-C8]">
      <seq>ggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgcttcaagattccaaggttttaagtatagccctgacatgctcagggaggaagtggaacgctataagaaatttgctgagaggttggaacctttcgttacagataccgtgcacttcatgaatgatgcgatatctcagaaaaagaagattttggtagaaggtggtcaggcaactatgctggatatcgattttgggacatatccttttgtcacttcatccagtccatcagctggtggaatctgcacaggtcttggaattgctcccagagttgtcggtgatcttgttggtgtggttaaggcatatacgacaagagttggttctggtcctttcccaacagaactcatgggcaaaagtggtgatcttcttcgttctgctgggcaggagtttggcacaactactggacgccctcgtcgctgtggttggctagacatagttgcactgagatactgctgtcaaataaatggatttgcttctctaaacctaacaaaactagatgtgctgtcaaatctatcagaaattcagttggggtgttacttacaggcatcctgatggttcaacattaaattcttttccttctgatctaactcttctcgaacaataaaagtggaatatgaagttatgcctggatggcagactgatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40588" stop="39052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40288" g_stop="39951" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39330" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="651" r_length="313" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E407174" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40288" e_stop="39951"/>
          <exon e_start="39641" e_stop="39330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATT-GGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG</genome_strand>
        <mrna_strand>GGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTTCAAGATTCCAAGGTTTTAAGTATAGCCCTGACATGCTCAGGGAGGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCTTTCGTTACAGATACCGTGCACTTCATGAATGATGCGATATCTCAGAAAAAGAAGATTTTGGTAGAAGGTGGTCAGGCAACTATGCTGGATATCGATTTTGGGACATATCCTTTTGTCACTTCATCCAGTCCATCAGCTGGTGGAATCTGCACAGGTCTTGGAATTGCTCCCAGAGTTGTCGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACGACAAGAGTTGGTTCTGGTCCTTTCCCAACAGAACTCATGGGCAAAAGTGGTGATCTTCTTCGTTCTGCTGGGCAGGAGTTTGGCACAACTACTGGACGCCCTCGTCGCTGTGGTTGGCTAGACATAGTTGCACTGAGATACTGCTGTCAAATAAATGGATTTGCTTCTCTAAACCTAACAAAACTAGATGTGCTGTCAAATCTATCAGAAATTCAGTTGGGGTGTTACTTACAGGCATCCTGATGGTTCAACATTAAATTCTTTTCCTTCTGATCTAACTCTTCTCGAACAATAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478765" ref_strand="+" ref_description="SGN-E478765 [cSTD-6-N16]">
      <seq>caaggaaggattttggtatccgatcgtgctcagttgttatttgattttcaccaagaagtagatgggcttagagaagctgagctagataagtcctttattggaaccaccaagagaggcattgggccttgctattcaagcaaggttattcgaaatggcataagggtaagtgatttaaggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgcttcaagattccaaggttttaagtatagccctgacatgctcagggaggaagtggaacgctataagaaatttgctgagaggttggaacctttcgttacagataccgtgcacttcatgaatgatgcgatatctcagaaaaagaagattttggtagaaggtggtcaggcaactatgctggatatcgattttgggacatatccttttgtcacttcatccagtccatcagctggtggaatctgcacaggtcttggaattgctcccagagttgtcggtgatcttgttggtgtggttaaggcatatacgacaagagttggttctggtcctttcccaacagaactcatgggcaaaagtggtgatcttcttcgttctgctgggcaggagtttggcacaactactggacgccctcgtcgctgtggttggctagacatagttgcactgagatactgctgtcaaataaatggatttgcttctctaaacctaacaaactagatgtgctgtcaaatctatcagaaattcagttgggtgttacttacaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40763" stop="39092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40463" g_stop="39951" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39392" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="762" r_length="249" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E478765" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40463" e_stop="39951"/>
          <exon e_start="39641" e_stop="39392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGC</genome_strand>
        <mrna_strand>CAAGGAAGGATTTTGGTATCCGATCGTGCTCAGTTGTTATTTGATTTTCACCAAGAAGTAGATGGGCTTAGAGAAGCTGAGCTAGATAAGTCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCTTGCTATTCAAGCAAGGTTATTCGAAATGGCATAAGGGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTTCAAGATTCCAAGGTTTTAAGTATAGCCCTGACATGCTCAGGGAGGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCTTTCGTTACAGATACCGTGCACTTCATGAATGATGCGATATCTCAGAAAAAGAAGATTTTGGTAGAAGGTGGTCAGGCAACTATGCTGGATATCGATTTTGGGACATATCCTTTTGTCACTTCATCCAGTCCATCAGCTGGTGGAATCTGCACAGGTCTTGGAATTGCTCCCAGAGTTGTCGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACGACAAGAGTTGGTTCTGGTCCTTTCCCAACAGAACTCATGGGCAAAAGTGGTGATCTTCTTCGTTCTGCTGGGCAGGAGTTTGGCACAACTACTGGACGCCCTCGTCGCTGTGGTTGGCTAGACATAGTTGCACTGAGATACTGCTGTCAAATAAATGGATTTGCTTCTCTAAACCTAAC-AAACTAGATGTGCTGTCAAATCTATCAGAAATTCAGTTGGGTGTTACTTACAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480880" ref_strand="+" ref_description="SGN-E480880 [cSTD-15-L15]">
      <seq>cgaaatggcataagggtaagtgatttaaggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgcttcaagattccaaggttttaagtatagccctgacatgctcagggaggaagtggaacgctataagaaatttgctgagaggttggaacctttcgttacagataccgtgcacttcatgaatgatgctatatctcagaaaaagaagattttggtagaaggtggtcaggcaactatgctggatatcgattttgggacatatccttttgtcacttcatccagtccatcagctggtggaatctgcacaggtcttggaattgctcccagagttatcggtgatcttgttggtgtggttaaggcatatacgacaagagttggttctggtcctttcccaacagaactgatgggcaaaggtggtgatgttcttcgttctgctgggcaggagtttggcacaactactggacgccctcgtcgctgtggttggctagacatagttgcactgagatactgctgtcaaataaatggatttgcttctctaaacctgacaaaactagatgtgctgtcagatctatcagaaattcagttgggtgttacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40615" stop="39096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40316" g_stop="39951" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39396" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="612" r_length="246" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E480880" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40316" e_stop="39951"/>
          <exon e_start="39641" e_stop="39396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTAC</genome_strand>
        <mrna_strand>CGAAATGGCATAAGGGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTTCAAGATTCCAAGGTTTTAAGTATAGCCCTGACATGCTCAGGGAGGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCTTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTAGAAGGTGGTCAGGCAACTATGCTGGATATCGATTTTGGGACATATCCTTTTGTCACTTCATCCAGTCCATCAGCTGGTGGAATCTGCACAGGTCTTGGAATTGCTCCCAGAGTTATCGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACGACAAGAGTTGGTTCTGGTCCTTTCCCAACAGAACTGATGGGCAAAGGTGGTGATGTTCTTCGTTCTGCTGGGCAGGAGTTTGGCACAACTACTGGACGCCCTCGTCGCTGTGGTTGGCTAGACATAGTTGCACTGAGATACTGCTGTCAAATAAATGGATTTGCTTCTCTAAACCTGACAAAACTAGATGTGCTGTCAGATCTATCAGAAATTCAGTTGGGTGTTACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255028" ref_strand="+" ref_description="SGN-E255028 [cLEG-31-G21]">
      <seq>tttggtatcagatcgtgctcacttgttattggattttcaccaagaagtagatgggcttatagaagctgagctagataagtcctttattggtaccaccaagagaggcattgggccttcctattcaagcaaggttattcgaaatggcataagggttagtgatttaaggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgcttcaagattccaaggttttaagtattgccctgacatgctcagggaggaagtggaacgctataagaaatttgctgagaggttggaacctttcgttacagatactgtgcacttcatgaatgatgctatatctcagaaaaagaagattttggtagaaggtggtcaggcaactatgctggatatcgattttgggacatacccttttgtcacttcatccagtccatcagctggtggaatctgcacaggtcttggaattgctcccagagttgtcggtgatcttgttggtgtggttaaggcatatacgacaagagttggttctggtcctttcccaacagaactcatgggcgaatatggcgatcttcttcgttctgctgggcaggagtttggtacaactactggacgcccgcgtcgctgtggttggctagacatagttgcactaagatactgctgtcaaataaatggatttgcttctctaaacctgacaaaactagatgtgctgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40751" stop="39129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40452" g_stop="39951" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="715" r_length="213" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E255028" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40452" e_stop="39951"/>
          <exon e_start="39641" e_stop="39429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCA</genome_strand>
        <mrna_strand>TTTGGTATCAGATCGTGCTCACTTGTTATTGGATTTTCACCAAGAAGTAGATGGGCTTATAGAAGCTGAGCTAGATAAGTCCTTTATTGGTACCACCAAGAGAGGCATTGGGCCTTCCTATTCAAGCAAGGTTATTCGAAATGGCATAAGGGTTAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTTCAAGATTCCAAGGTTTTAAGTATTGCCCTGACATGCTCAGGGAGGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCTTTCGTTACAGATACTGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTAGAAGGTGGTCAGGCAACTATGCTGGATATCGATTTTGGGACATACCCTTTTGTCACTTCATCCAGTCCATCAGCTGGTGGAATCTGCACAGGTCTTGGAATTGCTCCCAGAGTTGTCGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACGACAAGAGTTGGTTCTGGTCCTTTCCCAACAGAACTCATGGGCGAATATGGCGATCTTCTTCGTTCTGCTGGGCAGGAGTTTGGTACAACTACTGGACGCCCGCGTCGCTGTGGTTGGCTAGACATAGTTGCACTAAGATACTGCTGTCAAATAAATGGATTTGCTTCTCTAAACCTGACAAAACTAGATGTGCTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478814" ref_strand="+" ref_description="SGN-E478814 [cSTD-7-M15]">
      <seq>caaggaaggattttggtatccgatcgtgctcagttgttatttgattttcaccaagaagtagatgggcttagagaagctgagctagataagtcctttattggaaccaccaagagaggcattgggccttgctattcaagcaaggttattcgaaatggcataagggtaagtgatttaaggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgcttcaagattccaaggttttaagtatagccctgacatgctcagggaggaagtggaacgctataagaaatttgctgagaggttggaacctttcgttacagataccgtgcacttcatgaatgatgcgatatctcagaaaaagaagattttggtagaaggtggtcaggcaactatgctggatatcgattttgggacatatccttttgtcacttcatccagtccatcagctggtggaatctgcacaggtcttggaattgctcccagagttgtcggtgatcgtgttggtgtggttaacgcatatacgacaagagttggttctggtcctttcccaacagaactcatgggcaaaaagtggtgatcttctttggttctgctgggcaagagtttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40763" stop="39282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40463" g_stop="39951" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39641" g_stop="39543" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="614" r_length="101" r_score="0.869"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E478814" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40463" e_stop="39951"/>
          <exon e_start="39641" e_stop="39543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGC-AAAGGTGGTGACCTTC-TTCGTTTTGCTGGGCAGGAGTTTGGC</genome_strand>
        <mrna_strand>CAAGGAAGGATTTTGGTATCCGATCGTGCTCAGTTGTTATTTGATTTTCACCAAGAAGTAGATGGGCTTAGAGAAGCTGAGCTAGATAAGTCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCTTGCTATTCAAGCAAGGTTATTCGAAATGGCATAAGGGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTTCAAGATTCCAAGGTTTTAAGTATAGCCCTGACATGCTCAGGGAGGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCTTTCGTTACAGATACCGTGCACTTCATGAATGATGCGATATCTCAGAAAAAGAAGATTTTGGTAGAAGGTGGTCAGGCAACTATGCTGGATATCGATTTTGGGACATATCCTTTTGTCACTTCATCCAGTCCATCAGCTGGTGGAATCTGCACAGGTCTTGGAATTGCTCCCAGAGTTGTCGGTGATCGTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAACGCATATACGACAAGAGTTGGTTCTGGTCCTTTCCCAACAGAACTCATGGGCAAAAAGTGGTGATCTTCTTTGGTTCTGCTGGGCAAGAGTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483811" ref_strand="+" ref_description="SGN-E483811 [cSTE-11-C11]">
      <seq>agctcgttgatatactggcaaagcatttcgacattgttgctcgttgtcagggtggagccaatgctgggcacactatttacaattctgaggggaagaagtttgctctgcaccttgtcccttctgggattctcaacgaggaaactctatgtgttattggtaatggagttgtggtgcatctaccgggactttttaaagaaattgatggtcttgaagctaatggagtctcttgccaaggaaggatcttggtatctgatcgtgcacacttgttatttgattttcaccaagaaatagatgggcttagagaagctgagctagctaaatcctttattggaaccaccaagagaggcattgggccatgctattcaagcaaggttattagaaatggtttaagagtaagtgatttaaggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgccgcaagattcccaggctttaagtatggtcctgacatgctcagggaagaagtggaacgctataagaaatttgctgagaggttggaaccctttgttgcagatactgtgcacttcatgaatgatgctatatctcagaaaaagaagattttggtggaaggtggtcaggcaacaatgctggatattgattttggaacatacccttttgtgacttcatccagtccatcggctggtggaatctgcacaggtcttggcattgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40994" stop="39679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40694" g_stop="39979" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E483811" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40694" e_stop="39979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCC</genome_strand>
        <mrna_strand>AGCTCGTT-GATATACTGGCAAAGCATTTCGACATTGTTGCTCGTTGTCAGGGTGGAGCCAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTATGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTCTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGTTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCCGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCCTTTGTTGCAGATACTGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGCTGGATATTGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602820" ref_strand="+" ref_description="SGN-E602820 [55894]">
      <seq>caggtatcaggcgtgctgggttgtcaatggggtaatgaaggaaaaggaaagctcgttgatatattggctaagcaatttgatattgttgctcgttgtcagggaggagccaatgctgggcacactatttacaattctgaggggaagaagtttgctctgcaccttgtcccttcagggattctcaatgaggaaactatatgtgttattggtaacggagtcgtggtacatctaccaggactttttaatgaaattgacaatcttgaatctaatggagtttcttgccagggaaggattttggtatccgatcgtgctcagttgttatttgattttcaccaagaagtagatgggcttagagaagctgagctagataagtcctttattggaaccaccaagagaggcatagggccttgctattcaagcaaggttattcgaaatggcataagggtaagtgatttaaggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgcttcaagattccaaggttttaagtatagccctgacatgctcagggaggaagtggaacgctataagaaatttgctgagaggttggaacctttcgttacagataccgtgcacttcatgaatgatgctatatctcagaaaaagaagattttggtagaaggtggtcaggcaactatgctggatatcgattttgggacatatccttttgtcacttcatccagtccatcagctggtggaatctgcacaggtcttggaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="41522" stop="39683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41222" g_stop="41124" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="39982" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="761" r_length="662" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E602820" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41222" e_stop="41124"/>
          <exon e_start="40643" e_stop="39982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGC</genome_strand>
        <mrna_strand>CAGGTATCAGGCGTGCTGGGTTGTCAATGGGGTAATGAAGGAAAAGGAAAGCTCGTTGATATATTGGCTAAGCAATTTGATATTGTTGCTCGTTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCCAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCAGGGATTCTCAATGAGGAAACTATATGTGTTATTGGTAACGGAGTCGTGGTACATCTACCAGGACTTTTTAATGAAATTGACAATCTTGAATCTAATGGAGTTTCTTGCCAGGGAAGGATTTTGGTATCCGATCGTGCTCAGTTGTTATTTGATTTTCACCAAGAAGTAGATGGGCTTAGAGAAGCTGAGCTAGATAAGTCCTTTATTGGAACCACCAAGAGAGGCATAGGGCCTTGCTATTCAAGCAAGGTTATTCGAAATGGCATAAGGGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTTCAAGATTCCAAGGTTTTAAGTATAGCCCTGACATGCTCAGGGAGGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCTTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTAGAAGGTGGTCAGGCAACTATGCTGGATATCGATTTTGGGACATATCCTTTTGTCACTTCATCCAGTCCATCAGCTGGTGGAATCTGCACAGGTCTTGGAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461404" ref_strand="+" ref_description="SGN-E461404 [cPRO-8-I12]">
      <seq>ggaaagctcgttgatatattggctaagcaatttgatattgttgctcgttgtcagggaggagccaatgctgggcacactatttacaattctgaggggaagaagtttgctctgcaccttgtcccttcagggattctcaatgaggaaactatatgtgttattggtaacggagtcgtggtacatctaccaggactttttaatgaaattgacaatcttgaatctaatggagtttcttgccaaggaaggattttggtatccgatcgtgctcagttgttatttgattttcaccaagaagtagatgggcttagagaagctgagctagataagtcctttattggaaccaccaagagaggcattgggccttgctattcaagcaaggttattcgaaatggcataagggtaagtgatttaaggcatatggacacattcccccaaaagcttgatcttttattatcagatgccgcttcaagattccaaggttttaagtatagccctgacatgctcagggaggaagtggaacgctataagaaatttgctgagaggttggaacctttcgttacagataccgtgcacttcatgaatgatgcgatatctcagaaaaagaagattttggtagaaggtggtcaggcaactatngctggatatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40998" stop="39755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40698" g_stop="40055" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E461404" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40698" e_stop="40055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAAT-GTTGGATATAG</genome_strand>
        <mrna_strand>GGAAAGCTCGTT-GATATATTGGCTAAGCAATTTGATATTGTTGCTCGTTGTCAGGGAGGAGCCAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCAGGGATTCTCAATGAGGAAACTATATGTGTTATTGGTAACGGAGTCGTGGTACATCTACCAGGACTTTTTAATGAAATTGACAATCTTGAATCTAATGGAGTTTCTTGCCAAGGAAGGATTTTGGTATCCGATCGTGCTCAGTTGTTATTTGATTTTCACCAAGAAGTAGATGGGCTTAGAGAAGCTGAGCTAGATAAGTCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCTTGCTATTCAAGCAAGGTTATTCGAAATGGCATAAGGGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTTCAAGATTCCAAGGTTTTAAGTATAGCCCTGACATGCTCAGGGAGGAAGTGGAACGCTATAAGAAATTTGCTGAGAGGTTGGAACCTTTCGTTACAGATACCGTGCACTTCATGAATGATGCGATATCTCAGAAAAAGAAGATTTTGGTAGAAGGTGGTCAGGCAACTATNGCTGGATATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450150" ref_strand="+" ref_description="SGN-E450150 [cSTS-8-F5]">
      <seq>ggatcgtcaaggggtcaacgagtcaggactgagtcgaattgagtcactgagtcaggtatcaggcgtgctgggttgtcaatggggtgatgaaggaaagggaaagctcgttgatatattggctaagcaatttgatattgttgctcgttgtcagggaggagccaatgctgggcacactatttacaattctgaggggaagaagtttgctctgcaccttgtcccttcagggattctcaatgaggaaactatatgtgttattggtaacggagtcgtggtacatctaccaggactttttaatgaaattgacaatcttgaatctaatggagtttcttgccaaggaaggattttggtatccgatcgtgctcagttgttatttgattttcaccaagaagtagatgggcttagagaagctgagctagataagtcctttattggaaccaccaagagaggcattgggccttgctattcaagcaaggttattcgaaatggcataagggtaagtgatttaaggcatatggacacattcccccaaaagcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="41574" stop="39957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41274" g_stop="41124" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="40257" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="538" r_length="387" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E450150" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41274" e_stop="41124"/>
          <exon e_start="40643" e_stop="40257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGAT</genome_strand>
        <mrna_strand>GGATCGTCAAGGGGTCAACGAGTCAGGACTGAGTCGAATTGAGTCACTGAGTCAGGTATCAGGCGTGCTGGGTTGTCAATGGGGTGATGAAGGAAAGGGAAAGCTCGTTGATATATTGGCTAAGCAATTTGATATTGTTGCTCGTTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCCAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCAGGGATTCTCAATGAGGAAACTATATGTGTTATTGGTAACGGAGTCGTGGTACATCTACCAGGACTTTTTAATGAAATTGACAATCTTGAATCTAATGGAGTTTCTTGCCAAGGAAGGATTTTGGTATCCGATCGTGCTCAGTTGTTATTTGATTTTCACCAAGAAGTAGATGGGCTTAGAGAAGCTGAGCTAGATAAGTCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCTTGCTATTCAAGCAAGGTTATTCGAAATGGCATAAGGGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577144" ref_strand="+" ref_description="SGN-E577144 [33157]">
      <seq>caaccatgaggctcgatgccagctcaatcacaacggctacagccaccgcgacggcgaaggtgagtcaccggagtgggatcatcggttacaatgggaccaatagttgtaggctcattcagttccagcaaaggaagaaaaaggcttcttcattgatcgtttgttcgacaaagccgctttcctcggtagtggatcgtcaaggggtcaacgagtcaggactgagtcgaattgagtcactgagtcaggtttcaggcgtgctgggttgtcaatggggtgatgaaggaaaaggaaagctcgttgatatattggctaagcaatttgatattgttgctcgttgtcagggaggagccaatgctgggcacactatttacaattctgaggggaagaagtttgctctgcaccttgtcccttcagggattctcaatgaggaaactatatgtgttattggtaacggagtcgtggtacatctaccaggactttttaatgaaattgacaatcttgaatctaatggagtttcttgccaaggaaggattttggtatctgatcgtgctcagttgttatttgattttcaccaagaagtagatgggcttagagaagctgagctagataagtcctttattggaaccaccaagagaggcattgggccttgctattcaagcaaggttattcgaaatggcataagggtaagtgatttaaggcatatggacacattcccccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="41631" stop="39963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41394" g_stop="41124" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="338" r_length="274" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="40263" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="719" r_length="381" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E577144" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41394" e_stop="41124"/>
          <exon e_start="40643" e_stop="40263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTC--AATTG-TCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAG</genome_strand>
        <mrna_strand>TCACCGGAGTGGGATCATCGGTTACAATGGGACCAATAGTTGTAGGCTCATTCAGTTCCAGCAAAGGAAGAAAAAGGCTTCTTCATTGATCGTTTGTTCGACAAAGCCGCTTTCCTCGGTAGTGGATCGTCAAGGGGTCAACGAGTCAGGACTGAGTCGAATTGAGTCACTGAGTCAGGTTTCAGGCGTGCTGGGTTGTCAATGGGGTGATGAAGGAAAAGGAAAGCTCGTTGATATATTGGCTAAGCAATTTGATATTGTTGCTCGTTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCCAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCAGGGATTCTCAATGAGGAAACTATATGTGTTATTGGTAACGGAGTCGTGGTACATCTACCAGGACTTTTTAATGAAATTGACAATCTTGAATCTAATGGAGTTTCTTGCCAAGGAAGGATTTTGGTATCTGATCGTGCTCAGTTGTTATTTGATTTTCACCAAGAAGTAGATGGGCTTAGAGAAGCTGAGCTAGATAAGTCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCTTGCTATTCAAGCAAGGTTATTCGAAATGGCATAAGGGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467466" ref_strand="+" ref_description="SGN-E467466 [cSTB-49-E15]">
      <seq>catatctccgtttttagcgtgcacagcgcaaccgcacgccgccgcggcactaccattaccatgaacatctcaactctgaggctcgattccaatccaatcaccacggcaacggcgactcaccggaatgggatcctcggttgcaatgggacctatagttgtaggttcaatcagttccagcagaggaagaagactccttcagttatcgtttgttcgacaaagccgcttgcctcggtagtcgaccatcaaggggttaatgagtcagggatgagtcgaattgagtcactcagtcaggtatccggcgtgttgggttgccaatggggcgatgaaggaaagggaaagctcgttgatatactggctaagcatttcgacattgttgctcgttgtcagggtggagcaaatgctgggcacactatttacaattctgaggggaagaagtttgccctgcaccttgtcccttctgggattctcaacgaggacactctatgtgttattggtaatggagttgtggtgcatctaccgggactttttaaagaaatcgatggtcttgaagctaatggagtctcttgccaaggaaggatcttggtatctgatcgtgcacacttgttatttgattttcaccaagaaatagatgggcttagagaagctgagctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="41810" stop="40078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41510" g_stop="41124" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="40378" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="653" r_length="266" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E467466" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41510" e_stop="41124"/>
          <exon e_start="40643" e_stop="40378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGC</genome_strand>
        <mrna_strand>CATATCTCCGTTTTTAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTGAGGCTCGATTCCAATCCAATCACCACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTGTAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTCCTTCAGTTATCGTTTGTTCGACAAAGCCGCTTGCCTCGGTAGTCGACCATCAAGGGGTTAATGAGTCAGGGATGAGTCGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAGCATTTCGACATTGTTGCTCGTTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGCAAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCCCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGACACTCTATGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATCGATGGTCTTGAAGCTAATGGAGTCTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583322" ref_strand="+" ref_description="SGN-E583322 [9143]">
      <seq>ggaaagctcgttgatatactggctaagcatttcgacattgttgctcgttgtcagggtggagcaaatgctgggcacactatttacaattctgaggggaagaagtttgccctgcaccttgtcccttctgggattctcaacgaggaaactctatgtgttattggtaatggacttgtggtgcatctaccgggactttttaaagaaatcgatggtcttgaagctcatggagtctcttgccaaggaaggatcttggtatctgatcgtgcacacttgttatttgattttcagcaagaaatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="40998" stop="40101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40698" g_stop="40401" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E583322" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40698" e_stop="40401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGAT</genome_strand>
        <mrna_strand>GGAAAGCTCGTT-GATATACTGGCTAAGCATTTCGACATTGTTGCTCGTTGTCAGGGTGGAGCAAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCCCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTATGTGTTATTGGTAATGGACTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATCGATGGTCTTGAAGCTCATGGAGTCTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCAGCAAGAAATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590890" ref_strand="+" ref_description="SGN-E590890 [44686]">
      <seq>ctcctcatttctcattcctctctcttgcatatctccgtttttagcgtgcacagcgcaaccgcacgccgccgcggcactaccattaccatgaacatctcaactctgaggctcgattccaatccaatcaccacggcaacggcgactcaccggaatgggatcctcggttgcaatgggacctatagttgtaggttcaatcagttccagcagaggaagaagactccttcagttatcgtttgttcgacaaagccgcttgcctcggtagtcgaccatcaaggggttaatgagtcagggatgagtcgaattgagtcactcagtcaggtatccggcgtgttgggttgccaatggggcgatgaaggaaagggaaagctcgttgatatactggctaagcatttcgacattgttgctcgttgtcagggtggagcaaatgctgggcacactatttacaattctgaggggaagaagtttgccctgcaccttgtcccttctgggattctcaacgaggaaactctatgtgttattggtaatggagttgtggtgcatctaccgggactttttaaagaaatcgatggtcttgaagctaatggagtctcttgccaaggaaggatcttggtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="41832" stop="40143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41537" g_stop="41124" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="40443" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="615" r_length="201" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E590890" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41537" e_stop="41124"/>
          <exon e_start="40643" e_stop="40443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACATTTCTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCT</genome_strand>
        <mrna_strand>CTCCTCATTTCTCATTCCTCTCTCTTGCATATCTCCGTTTTTAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTGAGGCTCGATTCCAATCCAATCACCACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTGTAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTCCTTCAGTTATCGTTTGTTCGACAAAGCCGCTTGCCTCGGTAGTCGACCATCAAGGGGTTAATGAGTCAGGGATGAGTCGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAGCATTTCGACATTGTTGCTCGTTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGCAAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCCCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTATGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATCGATGGTCTTGAAGCTAATGGAGTCTCTTGCCAAGGAAGGATCTTGGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557589" ref_strand="+" ref_description="SGN-E557589 [16411]">
      <seq>aacattttcctcctcatttctcattcctctctcttgcatatctccgtttttagcgtgcacagcgcaaccgcacgccgccgcggcactaccattaccatgaacatctcaactctgaggctcgattccaatccaatcaccacggcaacggcgactcaccggaatgggatcctcggttgcaatgggacctatagttgtaggttcaatcagttccagcagaggaagaagactccttcagttatcgtttgttcgacaaagccgcttgcctcggtagtcgaccatcaaggggttaatgagtcagggatgagtcgaattgagtcactcagtcaggtatccggcgtgttgggttgccaatggggcgatgaaggaaagggaaagctcgttgatatactggctaagcatttcgacattgttgctcgttgtcagggtggagcaaatgctgggcacactatttacaattctgaggggaagaagtttgccctgcaccttgtcccttctgggattctcaacgaggaaactctatgtgttattggtaatggagttgtggtgcatctaccgggactttttaaagaaatcgatggtcttgaagctaatggagtctcttgccaaggaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="41832" stop="40153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41531" g_stop="41124" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="423" r_length="408" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="40453" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="614" r_length="191" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E557589" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41531" e_stop="41124"/>
          <exon e_start="40643" e_stop="40453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGAT</genome_strand>
        <mrna_strand>ATTTCTCATTCCTCTCTCTTGCATATCTCCGTTTTTAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTGAGGCTCGATTCCAATCCAATCACCACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTGTAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTCCTTCAGTTATCGTTTGTTCGACAAAGCCGCTTGCCTCGGTAGTCGACCATCAAGGGGTTAATGAGTCAGGGATGAGTCGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAGCATTTCGACATTGTTGCTCGTTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGCAAATGCTGGGCACACTATTTACAATTCTGAGGGGAAGAAGTTTGCCCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTATGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATCGATGGTCTTGAAGCTAATGGAGTCTCTTGCCAAGGAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248661" ref_strand="+" ref_description="SGN-E248661 [cLEF-58-G15]">
      <seq>cttattcctctctcttgcatatctccgtttatagcgtgcacagcgcaaccgcacgccgccgcggcactaccattaccatgaacatctcaactctaagactcgattccaatccaatcactacggcaacggcgactcaccggaatgggatcctcggttgcaatgggacctatagttataggttcaatcagttccagcagaggaagaagactgcttcaattgtcgtttgttcgacaaagcctcttgcctcggtagtggaccatcagggggttaatgagtcaggactgagacgaattgagtcactcagtcaggtatccggcgtgttgggttgccaatggggcgatgaaggaaagggaaagctcgttgatatactggctaaacatttcgacattgttgctcgttgtcagggtggagccaatgctgggcatactatatacaattctgaggggaagaagtttgctctgcaccttgtcccttctgggattctcaacgaggaaactctgtgtgttattggtaatggagttgtggtgcatctaccgggactttttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="41827" stop="40199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41527" g_stop="41124" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="40499" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="549" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E248661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41527" e_stop="41124"/>
          <exon e_start="40643" e_stop="40499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAG</genome_strand>
        <mrna_strand>CTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297376" ref_strand="+" ref_description="SGN-E297376 [cLEW-10-K7]">
      <seq>aataacattccttatttctctctcttgcatatctgcgtttatagcgtgcacagcgcaaccgcacgccgccgcggcactaccattaccatgaacatctcaactctaagactcgattccaatccaatcactacggcaacggcgactcaccggaatgggatcctcggttgcaatgggacctatagttataggtgcaatcagttccagcagaggaagaagactgcttcaattgtcgatcgttcgacaaagcctcttgcctcggtagtggaccatcagggggttaatgagtcaggactgagacgaattgagtcactcattcaggtatccggcgtgtggggttgccaatggggcgatgaaagaaagggaaagctcgttgatatactggctaaacatttcgacattgttgctcgatgtcagggtggagccaatgctgggcatactatatacaattctgaggggaagaagtttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="41837" stop="40289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41537" g_stop="41124" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="40589" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="469" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E297376" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41537" e_stop="41124"/>
          <exon e_start="40643" e_stop="40589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACATTTCTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTC</genome_strand>
        <mrna_strand>AATAACATTCCTTATTTCTCTCTCTTGCATATCTGCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTGCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGATCGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCATTCAGGTATCCGGCGTGTGGGGTTGCCAATGGGGCGATGAAAGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGATGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457397" ref_strand="+" ref_description="SGN-E457397 [cPRO-2-J1]">
      <seq>ctagtctcgagttttttttttttttttttttttcatttcacaattatcatattgctgcgcttacagcatccaacgtttcattaaaactgaacaaaacagtaagctcaaacatcaagtctacgcttaaaagtcatataacatttatttcccaactttctaaaaacacaaactataaacaaggaaaactatccccatttatcgaagccctaatttgacaatccaaaaaagggcggaattcaaaaccatacccgagcagatccacataaaattattccgcatcagcggattcaagttcgaggcgttttagggcttcttgggggggccaagtttcaaggggtgagatcgggctttggcattgagtcccacaccgaggatgacgatggtgaagaagctgggtgatgtagcaaggggagttccccaatcctcccatttttcgggactgtccagggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="25619" stop="45130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43829" g_stop="43845" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.588"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43846" i_stop="44179" i_length="334">
            <donor d_prob="0.141" d_score="0.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44180" g_stop="44191" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="29" r_length="12" r_score="0.750"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44192" i_stop="44437" i_length="246">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44438" g_stop="44848" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="451" r_length="422" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E457397" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43829" e_stop="43845"/>
          <exon e_start="44180" e_stop="44191"/>
          <exon e_start="44438" e_stop="44848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCAAGTAACATGTGAGTAGCACACTTGCAAATAAGAGAGGGATGTTACTACAAATGGCAAGATCAACCTATAAAGGCAAGATAACTTCTTAGGAAATATTATTCCAAGCCTACAACTAGCAATCAGAACACTTGAAAATAAGTGGCATTACTCCAACAGGTAAGATAACTTCTTAGGTGTTTTCCCTTCCCTCCCCACCCCACACCCAACTCTGTCACTAACAGTGAACCTTAAACAAGCATGCCTCTCCCCCGCCCCTTCACCCTCTATATCGAGAGAATGGAACCTTAAACAAGCATAATTCATCCTTCTCAAAGTAGTTTTCTTGCCTAGTTCAGTTTGCAGGTTTTCTTTTTGGTATAAATGCAGCAGGCGAGCAGACACGCGACCAGCTTGGGATTGAGGCATAGTCGACTAATTGAACTCAGTCGCCCATATTTAACTAGTCTAACACAACCATCATACTTGAATTTTCTCAAATCACAGACAAACTAACCTGTCAATCACATAACCTGATCCAAGCATAACATACTATTAAACACAATTACAAGCGAACAATATGCATTCCCGAGTGAAACTGAAAAAGAATAATATTGTCAACCATTGTCATTTCACAATTATCATATTGCTGCGTTTACAGCATCCAACGTTTCATTAGAACTGAACAAAACAGTAAGCTCAAACTTCAAGTCTACGCTTAAAAGT--TTTAACATTTATTTCCCAACTTTCTAAAAACACAAACTATAAACAAGGAAAACTATCCCCATTTATCGAAGCCCTAATTTGACAATCCAAAAAAGGGCGGAATTCAAAACCATACCCGAGCAGATCCACAT---ATTATTCCGCATCGGCGGATTCAAGTTCGAGGCGTTTTAGGGCTTCTTGGTGGGCCCAAGTTTCAA-GGGTGAGATCGGGC-TTGGCATTGAGTCCCACACCCAGGATGACGATGGTGAAGAAGCT-GGTGATGTAGCAA-GGGAGTT-CCCAATCCTCCCA-TTTACGGGACTGTCCAGGCGG</genome_strand>
        <mrna_strand>CTAGTCTCGAGTTTTTT..............................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTT......................................................................................................................................................................................................................................................TTTTCATTTCACAATTATCATATTGCTGCGCTTACAGCATCCAACGTTTCATTAAAACTGAACAAAACAGTAAGCTCAAACATCAAGTCTACGCTTAAAAGTCATATAACATTTATTTCCCAACTTTCTAAAAACACAAACTATAAACAAGGAAAACTATCCCCATTTATCGAAGCCCTAATTTGACAATCCAAAAAAGGGCGGAATTCAAAACCATACCCGAGCAGATCCACATAAAATTATTCCGCATCAGCGGATTCAAGTTCGAGGCGTTTTAGGGCTTCTTGGGGGGGCCAAGTTTCAAGGGGTGAGATCGGGCTTTGGCATTGAGTCCCACACCGAGGATGACGATGGTGAAGAAGCTGGGTGATGTAGCAAGGGGAGTTCCCCAATCCTCCCATTTTTCGGGACTGTCCAGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403493" ref_strand="+" ref_description="SGN-E403493 [PPC-10-D24]">
      <seq>ccaggatcgacctaacggatacttattcaaccgtgttccaccaccgcctggacagtcccgaaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctcggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaagcgcagcaatatgataattgtgaaatgacaatggttgacaatattattctttttattatcactcacggatgtgtattgtttgcttgtaattgtgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45191" stop="44067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44891" g_stop="44357" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E403493" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44891" e_stop="44357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTA-A-AACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCACTCGGGAATGCATATTGTTCGCTTGTAATTGTGTTTAATAGTATGTTATG</genome_strand>
        <mrna_strand>CCAGGATCGACCTAACGGATACTTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGAAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTCGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAGCGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTT-ATTATCACTCACGGATGTGTATTGTTTGCTTGTAATTGTGTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717318" ref_strand="+" ref_description="SGN-E717318 [FB19DD09]">
      <seq>gtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattattctttttcagtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45312" stop="25630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45012" g_stop="44391" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E717318" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45012" e_stop="44391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCACTCGGGAATGCATATT</genome_strand>
        <mrna_strand>GTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321733" ref_strand="+" ref_description="SGN-E321733 [cTOB-25-E4]">
      <seq>ccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtggttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaangttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattattctttttcagtttcactcggggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45217" stop="44099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44917" g_stop="44393" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E321733" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44917" e_stop="44393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCACTCGGGAATGCATA</genome_strand>
        <mrna_strand>CCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGGTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAANGTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCACTCGGGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287695" ref_strand="+" ref_description="SGN-E287695 [cLES-9-J11]">
      <seq>tgaattccgccctttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattattctttttcagtttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="44945" stop="44107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44645" g_stop="44395" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E287695" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44645" e_stop="44395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCGCCCTTTTT-TGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCACTCGGGAATGCA</genome_strand>
        <mrna_strand>TGAATTCCGCCCTTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458520" ref_strand="+" ref_description="SGN-E458520 [cPRO-6-A23]">
      <seq>tgggaactcccttgctacatcaccagcttcttcaccatcgtcatccttggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattattctttttattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45118" stop="44107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44818" g_stop="44398" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E458520" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44818" e_stop="44398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCACTCGGGAAT</genome_strand>
        <mrna_strand>TGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTTGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTT-ATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334850" ref_strand="+" ref_description="SGN-E334850 [cTOE-3-K14]">
      <seq>ggcgtccgtgaaacccttagcgaccgcccgccggcgcgctacgaagccccgtgttagttcgggccctccgcaccagaggaggacaccgggccgaatccattcaccactgcgggccaccaggatcgacctaaccggataccctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattattctttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45302" stop="44113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45002" g_stop="44404" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E334850" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45002" e_stop="44404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCCGTGAAACCCTTAGCGACCG-CCGCCGGCGCGCTACG-AG-CCCGTGTTAGTTCGGG-CCTCCGCACCAGAGGAGGACA-CGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAA-CGGATA-CCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCACTC</genome_strand>
        <mrna_strand>GGCGTCCGTGAAACCCTTAGCGACCGCCCGCCGGCGCGCTACGAAGCCCCGTGTTAGTTCGGGCCCTCCGCACCAGAGGAGGACACCGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACCGGATACCCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216826" ref_strand="+" ref_description="SGN-E216826 [cLEL-1-G15](-)">
      <seq>tacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45172" stop="25628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44872" g_stop="44410" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E216826" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44872" e_stop="44410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTT</genome_strand>
        <mrna_strand>TACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712073" ref_strand="+" ref_description="SGN-E712073 [FB03DC06]">
      <seq>gtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattattctttttcnnnaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45312" stop="44114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45012" g_stop="44413" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="624"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E712073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45012" e_stop="44413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCA</genome_strand>
        <mrna_strand>GTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235081" ref_strand="+" ref_description="SGN-E235081 [cLEL-6-D2](-)">
      <seq>acagtaccgtaaatggaaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgncaatattattctttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45140" stop="44113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44840" g_stop="44413" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="445"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E235081" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44840" e_stop="44413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCA</genome_strand>
        <mrna_strand>ACAGTACCGTAAATGGAAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGNCAATATTATTCTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234601" ref_strand="+" ref_description="SGN-E234601 [cLEL-6-D2](-)">
      <seq>tcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattattctttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45078" stop="44113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44778" g_stop="44413" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="383"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E234601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44778" e_stop="44413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCA</genome_strand>
        <mrna_strand>TCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343330" ref_strand="+" ref_description="SGN-E343330 [cTOF-17-L8]">
      <seq>tttcgttcatctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgaccatggttgacaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45324" stop="44126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45024" g_stop="44417" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E343330" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45024" e_stop="44417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTTCATCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTT</genome_strand>
        <mrna_strand>TTTCGTTCATCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACCATGGTTGACAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333116" ref_strand="+" ref_description="SGN-E333116 [cTOD-19-J13]">
      <seq>atctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgccctttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45316" stop="44126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45016" g_stop="44417" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E333116" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45016" e_stop="44417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCC-TTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTT</genome_strand>
        <mrna_strand>ATCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732645" ref_strand="+" ref_description="SGN-E732645 [LB02DA04]">
      <seq>gaggctttcgttcatctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45325" stop="44123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45029" g_stop="44424" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="621"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E732645" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45029" e_stop="44424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTTCGTTCATCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATT</genome_strand>
        <mrna_strand>GAGGCTTTCGTTCATCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711358" ref_strand="+" ref_description="SGN-E711358 [FB01DB10]">
      <seq>ccttgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataattgtgaaatgacaatggttgacaatattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45161" stop="44123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44861" g_stop="44424" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="457"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E711358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44861" e_stop="44424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATT</genome_strand>
        <mrna_strand>CCTTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564575" ref_strand="+" ref_description="SGN-E564575 [2824]">
      <seq>atccattcaccactgcgggccaccaggatcgacctaacggatacttattcaaccgtgttccaccaccgcctggacagtcccgaaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctcggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgccctttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaagcgcagcaatatgataattgtgaaatgacaatggttgacaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45213" stop="44126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44913" g_stop="44427" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="507"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E564575" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44913" e_stop="44427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCC-TTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTA-A-AACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAAT</genome_strand>
        <mrna_strand>ATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACTTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGAAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTCGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAGCGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293050" ref_strand="+" ref_description="SGN-E293050 [cLET-12-M19]">
      <seq>tgaaatgacaatggttgacaatattatattgctgcgtttacagcatccaacgtttcattagaactgaacaaaacagtaagctcaaacttcaagtctacgcttaaaagttttaacatttatttcccaactttctaaaaacacaaactataaacaaggaaaactatccccatttatcgaagccctaatttgacaatccaaaaaagggcggaattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="44145" stop="44946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44429" g_stop="44646" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E293050" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44429" e_stop="44646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAACCATTGTCATTTCACAATTATCATATTGCTGCGTTTACAGCATCCAACGTTTCATTAGAACTGAACAAAACAGTAAGCTCAAACTTCAAGTCTACGCTTAAAAGTTTTAACATTTATTTCCCAACTTTCTAAAAACACAAACTATAAACAAGGAAAACTATCCCCATTTATCGAAGCCCTAATTTGACAATCCAAAAAAGGGCGGAATTCAA</genome_strand>
        <mrna_strand>TG-AAATGACAAT-GGTTGACAA-TATTATATTGCTGCGTTTACAGCATCCAACGTTTCATTAGAACTGAACAAAACAGTAAGCTCAAACTTCAAGTCTACGCTTAAAAGTTTTAACATTTATTTCCCAACTTTCTAAAAACACAAACTATAAACAAGGAAAACTATCCCCATTTATCGAAGCCCTAATTTGACAATCCAAAAAAGGGCGGAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617160" ref_strand="+" ref_description="SGN-E617160 [90635]">
      <seq>agtggatcccccgggctgcagaaacgggccaatcattcaccactgcgggccacaggatcgactaacggatattatcaaccgtgttccacaccgnctggacagtcccgaaaatgggaggattgggaactccctttgctacattcaccagcttcttcaccatcgtcatcctcggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaagcgcagcaatatgataattgtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45229" stop="44138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44925" g_stop="44432" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="514" r_length="494" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E617160" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44925" e_stop="44432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCC-TTGCTACA-TCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTA-A-AACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTG</genome_strand>
        <mrna_strand>GAAACGGGCC-AAT-CATTCACCACTGCGGGCCA-CAGGATCGA-CTAACGGATA-TTA-TCAACCGTGTTCCA-CACCGNCTGGACAGTCCCGAAAATGGGAGGATTGGGAACTCCCTTTGCTACATTCACCAGCTTCTTCACCATCGTCATCCTCGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAGCGCAGCAATATGATAATTGTGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461556" ref_strand="+" ref_description="SGN-E461556 [cPRO-8-H22]">
      <seq>caacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccaaatccattcaccactgcgggccaccaggatcgacctaacggatacttattcaaccgtgttccaccaccgcctggacagtcccgaaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctcggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaagcgcagcaatatgataattgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45309" stop="44138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45009" g_stop="44436" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E461556" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45009" e_stop="44436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTA-A-AACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATG</genome_strand>
        <mrna_strand>CAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCAAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACTTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGAAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTCGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAGCGCAGCAATATGATAATTGTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430279" ref_strand="+" ref_description="SGN-E430279 [STM-53-M20]">
      <seq>caacgatgccgtccgtgaaacccttagcgaccgccgccggctcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccaaatccattcaccactgcgggccaccaggatcgacctaacggatacttattcaaccgtgttccaccaccgcctggacagtcccgaaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctcggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaagcgcagcaatatgataattgttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45309" stop="44138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45009" g_stop="44438" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E430279" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45009" e_stop="44438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTA-A-AACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTG-TGAAATGACAA</genome_strand>
        <mrna_strand>CAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCTCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCAAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACTTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGAAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTCGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAGCGCAGCAATATGATAATTGTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306050" ref_strand="+" ref_description="SGN-E306050 [cLEY-13-G1]">
      <seq>aacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45308" stop="44152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45008" g_stop="44441" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E306050" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45008" e_stop="44441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGA</genome_strand>
        <mrna_strand>AACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714154" ref_strand="+" ref_description="SGN-E714154 [FB10CF11]">
      <seq>gtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45312" stop="44152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45012" g_stop="44443" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E714154" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45012" e_stop="44443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAAT</genome_strand>
        <mrna_strand>GTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573723" ref_strand="+" ref_description="SGN-E573723 [33078]">
      <seq>gtcaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccaaatccattcaccactgcgggccaccaggatcgacctaacggatacttattcaaccgtgttccaccaccgcctggacagtcccgaaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctcggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaagcgcagcaatatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45312" stop="44152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45012" g_stop="44444" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E573723" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45012" e_stop="44444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTA-A-AACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAA</genome_strand>
        <mrna_strand>GT-CAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCAAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACTTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGAAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTCGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAGCGCAGCAATATGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430280" ref_strand="-" ref_description="SGN-E430280 [STM-53-M20]">
      <seq>caacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccaaatccattcaccactgcgggccaccaggatcgacctaacggatacttattcaaccgtgttccaccaccgcctggacagtcccgaaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctcggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaagcgcagcaatatgataattgtgaaaaaaaaagaaaaaaaaactcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45309" stop="44138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45009" g_stop="44445" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="587"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E430280" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430280" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45009" e_stop="44445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTA-A-AACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAA</genome_strand>
        <mrna_strand>CAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCAAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACTTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGAAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTCGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAGCGCAGCAATATGATAATTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733027" ref_strand="+" ref_description="SGN-E733027 [LB03DB04]">
      <seq>ttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttggatgctgtaaacgcagcaatatgataaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45286" stop="44152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44986" g_stop="44453" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="557"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E733027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44986" e_stop="44453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATA</genome_strand>
        <mrna_strand>TTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567687" ref_strand="+" ref_description="SGN-E567687 [11851]">
      <seq>gtcaacgatgccgtccgtgaaaccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccaaatccattcaccactgcgggccaccaggatcgacctaacggatacttattcaaccgtgttccaccaccgcctggacagtcccgaaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctcggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgctgatgcggaataattttatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttatatgacttttaagcgtagacttgatgtttgagcttactgttttgttcagttttaatgaaacgttggatgctgtaagcgcagacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45312" stop="44158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45012" g_stop="44458" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E567687" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45012" e_stop="44458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAA---TATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTA-A-AACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAG-CAATA</genome_strand>
        <mrna_strand>GT-CAACGATGCCGTCCGTGAAA-CCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCAAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACTTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGAAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTCGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCTGATGCGGAATAATTTTATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTATATGACTTTTAAGCGTAGACTTGATGTTTGAGCTTACTGTTTTGTTCAGTTTTAATGAAACGTTGGATGCTGTAAGCGCAGACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550853" ref_strand="+" ref_description="SGN-E550853 [TUS-54-A4]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44478" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E550853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGG</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688568" ref_strand="+" ref_description="SGN-E688568 [t3_tus_54_A04]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatgaaacgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44478" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E688568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGG</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550854" ref_strand="+" ref_description="SGN-E550854 [TUS-54-A5]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44486" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E550854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGA</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688569" ref_strand="+" ref_description="SGN-E688569 [t3_tus_54_A05]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44486" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E688569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGA</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688570" ref_strand="+" ref_description="SGN-E688570 [t3_tus_54_A06]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44490" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E688570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTA</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550845" ref_strand="+" ref_description="SGN-E550845 [TUS-54-A11]">
      <seq>tctgtcccacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgggttagttcgggcctccgcaccagaggaggacacgggccgaatccgttcgccactgcgggccaccaggatcgacctaacggatacctattcgacgcgtgttccaccaccgcctggacagtcccggaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccttcgtcatcctgggtgtgggactcgatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44493" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E550845" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAAC-CGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTT</genome_strand>
        <mrna_strand>TCTGTCCCACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGGGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCGTTCGCCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCGACGCGTGTTCCACCACCGCCTGGACAGTCCCGGAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCTTCGTCATCCTGGGTGTGGGACTCGATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688575" ref_strand="+" ref_description="SGN-E688575 [t3_tus_54_A11]">
      <seq>tctgtcccacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgggttagttcgggcctccgcaccagaggaggacacgggccgaatccgttcgccactgcgggccaccaggatcgacctaacggatacctattcgacgcgtgttccaccaccgcctggacagtcccggaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccttcgtcatcctgggtgtgggactcgatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44493" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E688575" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAAC-CGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTT</genome_strand>
        <mrna_strand>TCTGTCCCACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGGGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCGTTCGCCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCGACGCGTGTTCCACCACCGCCTGGACAGTCCCGGAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCTTCGTCATCCTGGGTGTGGGACTCGATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550865" ref_strand="+" ref_description="SGN-E550865 [TUS-54-B3]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttccataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44493" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E550865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTT</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCCATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688585" ref_strand="+" ref_description="SGN-E688585 [t3_tus_54_B03]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttccataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44493" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E688585" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTT</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCCATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550855" ref_strand="+" ref_description="SGN-E550855 [TUS-54-A6]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactgttttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44497" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E550855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTC</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551311" ref_strand="+" ref_description="SGN-E551311 [TUS-54-A7]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44505" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E551311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTG</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688571" ref_strand="+" ref_description="SGN-E688571 [t3_tus_54_A07]">
      <seq>tctgtccaacgatgccgtccgtgaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagcttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45315" stop="44205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45015" g_stop="44505" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E688571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45015" e_stop="44505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTG</genome_strand>
        <mrna_strand>TCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550846" ref_strand="+" ref_description="SGN-E550846 [TUS-54-A12]">
      <seq>ccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcgccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtagatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaagacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgtagacttgaagtttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45276" stop="44211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44976" g_stop="44511" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E550846" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44976" e_stop="44511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGC</genome_strand>
        <mrna_strand>CCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCGCCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAGATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAGACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715871" ref_strand="+" ref_description="SGN-E715871 [FB15CA06]">
      <seq>cgcgtgcctccgcaccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaacttttaagcgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45246" stop="44225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44948" g_stop="44516" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E715871" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44948" e_stop="44516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTT</genome_strand>
        <mrna_strand>CGCGTGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335429" ref_strand="+" ref_description="SGN-E335429 [cTOE-2-B22]">
      <seq>tccaacgatgccgtccgggaaacccttagcgaccgccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccacaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattatggcttcgataaatggggatagttatccttgcttataggttgtgtttttagaaagttgggaaataaatgttaaaacttttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45311" stop="44231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45011" g_stop="44531" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E335429" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45011" e_stop="44531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAG</genome_strand>
        <mrna_strand>TCCAACGATGCCGTCCGGGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCACAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTATGGCTTCGATAAATGGGGATAGTTATCCTTGCTTATAGGTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250265" ref_strand="+" ref_description="SGN-E250265 [cLEG-6-I1]">
      <seq>caccagaggaggacacgggccgaatccattcaccactgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgttaaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45236" stop="44234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44936" g_stop="44534" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E250265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44936" e_stop="44534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTT</genome_strand>
        <mrna_strand>CACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688576" ref_strand="+" ref_description="SGN-E688576 [t3_tus_54_A12]">
      <seq>ccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattctccgctgcgggccaccaggatcgacctaacggatacctattcaaccgtgttccaccaccgcctggacagtcccgtagatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45276" stop="44243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44976" g_stop="44543" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E688576" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44976" e_stop="44543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTT</genome_strand>
        <mrna_strand>CCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCTCCGCTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAGATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688579" ref_strand="+" ref_description="SGN-E688579 [t3_tus_54_A15]">
      <seq>ccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcgccactgcgggccaccaggatcgacctaacggatacctattcgaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45276" stop="44244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44976" g_stop="44544" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E688579" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44976" e_stop="44544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGT</genome_strand>
        <mrna_strand>CCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCGCCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCGACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550847" ref_strand="+" ref_description="SGN-E550847 [TUS-54-A15]">
      <seq>ccgccggcgcgctacgagcccgtgttagttcgggcctccgcaccagaggaggacacgggccgaatccattcgccactgcgggccaccaggatcgacctaacggatacctattcgaccgtgttccaccaccgcctggacagtcccgtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggcccaccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctcgggtatggttttgaattccgcccttttttggattgtcaaattagggcttcgataaatggggatagttttccttgtttatagtttgtgtttttagaaagttgggaaataaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45276" stop="44245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44976" g_stop="44545" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E550847" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44976" e_stop="44545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATG</genome_strand>
        <mrna_strand>CCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCGCCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCGACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351800" ref_strand="+" ref_description="SGN-E351800 [cTOS-8-A19]">
      <seq>gtaaatgggaggattgggaactcccttgctacatcaccagcttcttcaccatcgtcatcctgggtgtgggactcaatgccaagcccgatctcacccttgaaacttgggccccccaagaagccctaaaacgcctcgaacttgaatccgccgatgcggaataatatgtggatctgctccgggatggttttgaattccccccctttttggattgtccaaataagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="45132" stop="44312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44832" g_stop="44611" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E351800" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44832" e_stop="44611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGG</genome_strand>
        <mrna_strand>GTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCCCCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCCGGGATGGTTTTGAATTCCCCCCCTTTTTGGATTGTCCAAATAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365448" ref_strand="+" ref_description="SGN-E365448 [cLPT-2-M2]">
      <seq>tcaaaatttatcatcagatggatgatttaggcacccccagatcagctatttccttcaatgtgcttttatcagcttgcgtgcgctcaaaactatatgatcgtgtcccccagctgtttgatgaaattccagtgaagtatagatttttacctgataaagtgtcgtacggtatactgattaggtcatattgtgaaacggggttgccggaaatggcaatggaaatactcaaggtgatggaggagaaaagtgtggagattacaacggttactttcactactatactacattcattctacaagaaagggaagagtgatgaggcggagaaggtatggaatgagatggtgaacagagggtgtggtccagatgttggtgcatacaatgtgaagattatgaacattcaggggggtgatctggagggcgtgaaagctttaattgaggaaatgaacgatgctggattgaaacctgatacgattagctacaattatttgatgacttgttattgtaagaatgaattgatggacgaggcacagatggtttatgatgatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="46770" stop="45626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46470" g_stop="45926" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E365448" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46470" e_stop="45926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGACCAGTTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATTGTGTCCCCCAGCTGCTTGATGAAATTTCAGTGAAGTATGGATTTTTACCAGATAAAGTGTCGTACGATATACTAATTAGGTCATATTGTGAAATGAGATCGTCGAAAATGGCAATAAAAATACTCAAGGTGATAGAGGAGAAAAGTGTGGAGATTACAACGATTACTTTCACTACCATACTTCATTCATTCTACAAGAAAGGGAAGAATGATGAGGCGGAGAAGGTATGGAACGAGATGGTGAACAAAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATCATAAACATTCAGGGGGGTGATTTGGAGGGCGTGAAAGCTTTAATTGAGGAAATG-ACGATGTTGGATTGAAACCTGATACGACTAGCTACAATTACTTGATGACTTGTTATTGTAACAATGAATTGATGGACGAGGCACAAATAGTTTATGATGATCTGG</genome_strand>
        <mrna_strand>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGATCAGCTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATCGTGTCCCCCAGCTGTTTGATGAAATTCCAGTGAAGTATAGATTTTTACCTGATAAAGTGTCGTACGGTATACTGATTAGGTCATATTGTGAAACGGGGTTGCCGGAAATGGCAATGGAAATACTCAAGGTGATGGAGGAGAAAAGTGTGGAGATTACAACGGTTACTTTCACTACTATACTACATTCATTCTACAAGAAAGGGAAGAGTGATGAGGCGGAGAAGGTATGGAATGAGATGGTGAACAGAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATTATGAACATTCAGGGGGGTGATCTGGAGGGCGTGAAAGCTTTAATTGAGGAAATGAACGATGCTGGATTGAAACCTGATACGATTAGCTACAATTATTTGATGACTTGTTATTGTAAGAATGAATTGATGGACGAGGCACAGATGGTTTATGATGATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573850" ref_strand="+" ref_description="SGN-E573850 [33226]">
      <seq>tggagttgaagtttcacttttccatccaaaaaattgcaggagatggatttggacttcgacggtccaagtaaagtcccgagcaggcaagctcgttttgttcccaagaattccaaattgaagccccaacccaaaagtgaaacactgccattgaaggtagattcagatatttcgactaaaaaggaagaattggtatcacaaccccctctaagagatcatataacgaaaaacggagaggcaacggttgaggacgacgttccattgaatggagagacgacgggaaacgaccttgcagaagaacaagccacaatggaaactgatagcgatcgagatgaagttgtccgtgaagttgacgtgtggcttaccccttccgctaatgagttctatgtactccaagtatccgttgagatccgaatggcgtccctatggattggatgaaagaatgccaagacgtgaggttgagaccttcaacggcagaaatggaagttgatttggcaatagattttgattctaagaatttcgacagagactctgtacatgcagcaacgataaaaacagcaggattgtttctacaaaatgggtgccattatctacttgtgctgactttgctgttgggatcctcattggtgataagttacacctcaatcctgttcatgcaagtttgtacaggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="47632" stop="50656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48308" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48309" i_stop="48397" i_length="89">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48398" g_stop="48466" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="449" r_length="71" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48467" i_stop="48605" i_length="139">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48606" g_stop="48713" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="558" r_length="109" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48714" i_stop="49620" i_length="907">
            <donor d_prob="0.982" d_score="0.90"/>
            <acceptor a_prob="0.665" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49621" g_stop="49692" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="631" r_length="73" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49693" i_stop="50319" i_length="627">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50320" g_stop="50340" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="652" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E573850" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48308"/>
          <exon e_start="48398" e_stop="48466"/>
          <exon e_start="48606" e_stop="48713"/>
          <exon e_start="49621" e_stop="49692"/>
          <exon e_start="50320" e_stop="50340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTGAAGTTTCACTTTTCCATCCAGAAAATTGCA-GTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAGGTAGATTTTCTTGATTCAATATACGTCTGTTTTATTGTTGAATTTGCAAATTTTTCTATTTGTGAAGTATATTTTCTTTTCTTTTTCAGTTCTATGTACTCCAA-TATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAG-ATGCCAAGATGTGAGTTACAACTGCTTTTAGTGTTTTCCTTTGAACAAATTGGTCACTGTTATGTGATATTGCTAAAGACAGGAATTGATTGGCTGGTTTTAAATGACCAGTTTGGATGTCTAAAATCGATTTTTTAATCATTTTGCAGGTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAA-AACAGGTTCTTTTAGAGCTATGGAAGCTAGACTTTTATTGTTTTTTCTCTTCTTAAACCAGCAATAAAGACAAAAAAAAGAATCTAGGTGATTTATTTTTATATGTGTAAGACTTGTGCAGGAGCTACCAGCTACATTTGTTGGTTAGGGGCATATTACTTAGTCGGAAAAACATTGCAGCTCTTTTCGTCATGTCGCTTTCCTTTTGTTTGGTAACTCTTTAATTTTAGCATGTTTAAAACCACAAAATGAAAGGACATTTAGTCCCTTCTACCTTTTCTTAGTTTACGACCACAAGATTCAAAACTCTTCATATCTTAAACTATGTGCCAAGTCGAAACGAGTCAAACAAATTAAAATGGAGGGAGTATTACATTCCTCCCATTTCTCTGCCTTAAATTCCATTTGTAATACCATCTGTTTTGGGCCTACTCCTTGCTCTTAATGGACACGTGTATATACAGACAAAGGCAGACCCGCGTGTGGGAGGAGGTGGGGTGGGGGGTCATGGGATCCTGTTGACTTTAGGAGGAGTCGAGTGTTCAATTTTGTTTTCTTTAAGCCTCAATTTTCTTAACAAAAGAGGCTCAAAAATTTTCAAATGTAATGTTTAGAGCAAGAGTCGATCCTACACCCTTTACAGAGCAAATGAGGTGTTGGAACAAGAATCACTTTGTTAAGCTTTGTCATTTTTGCTTAATATATCCACTTCTTTGTAATCAGGTGGTGTCACATTCAACATGCATTCGACTTCACGGTTGTAACTTTGTTGTTAGTAGTAGGATAAGGAGGTTGTATTTTGAGAACTTTGACAATTAGAGTCTGGAAACTCCGCACTTGATATTTGTTCCCTTAGCAGGAATTACAGTTCTAATTGTTTGACCCAGAATCTGATTGGTTCTGAATTTCTAG-ATTGTTTCTACAAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGTTGGGATCTTCATTGGTGATAAGGTAAATGATTTGTTGTTGATGGCTTGAATGCATATTTAGCATCTGGTCTCGTGGAGTTCTGATTGACTAAAAGTTAGTCCTTCACAGGTTTTATATGTGCTTATCCTGTTCTGCTTTTGTCCTTTTTTTGTAATTATTAAAAAATAACTAATTTGGACCAGAACAATATCGGGCGGCTACACTCTCAACCTCAAATGTAATCAAGTCAATCTTTTATCAGCTTCAAGTTGAAGCAAACTATTTGCTGTCTGCTGTCAAATCTAACTCAACTGTTACCTATGGAGTTGGAAATTGTTATAATACCTCTGGCTCTCTTATTTAGCCCAAGTTCTGCCACTTAATATTAAAAAATTGTCAAGTCCTAGTTATATTCTTCTGTTTCTTATATAAATTGGTGTGAGGAACTTCAAGTAAAATCTCTAAGTTTGATGATAACTATCTGAAGCTCATTGCTGCAGTCAAAAGAAAAAATATACTGTAAAAATGCTTTTTACTTTTCAGTACAACCTATATACTGTACTTGTCAGTATACACAAATGTTACCTTCTCAAAAAAATTGATAAAATAAGTATCAAAGCTTATTAATGTTCTCAATAGTCACACTCTTGCTTCCTGTTTGTTATGCAGTTCCACCTCAATCCTGTTCAT</genome_strand>
        <mrna_strand>TGGAGTTGAAGTTTCACTTTTCCATCCAAAAAATTGCAGGAGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTTGTTCCCAAGAATTCCAAATTGAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGATATTTCGACTAAAAAGGAAGAATTGGTATCACAACCCCCTCTAAGAGATCATATAACGAAAAACGGAGAGGCAACGGTTGAGGACGACGTTCCATTGAATGGAGAGACGACGGGAAACGACCTTGCAGAAGAACAAGCCACAATGGAAACTGATAGCGATCGAGATGAAGTTGTCCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCTAATGAG.........................................................................................TTCTATGTACTCCAAGTATCCGTTGAGATCCGAATGGCGTCCCTATGGATTGGATGAAAGAATGCCAAGAC...........................................................................................................................................GTGAGGTTGAGACCTTCAACGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAGAATTTCGACAGAGACTCTGTACATGCAGCAACGATAAAAACAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTTTCTACAAAATGGGTGCCATTATCTACTTGTGCTGACTTTGCTGTTGGGATCCTCATTGGTGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCTCAATCCTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746518" ref_strand="+" ref_description="SGN-E746518 [GI|47104232]">
      <seq>ttcacttttccatccagaaaattgcagagatggatttggacttcgacggtgcaagtaaagtcccgagcaggcaagcccgttttgctcccaagaactccaaattaaagccccaacccaaaagcgaaacactgccattgaaggtagattcagatattccgactaaaaaggaagaatttgtatcacaaccccctctaagagatcatatagtgaaaaacggagaggcaacagttgaggacgacgttcctttgaatggagagactacgggaaacgatcttgcagaagaacaagtcggaatggaaactgatagcgatcaggatgaagttgttcgtgaagttgacgtgtggcttaccccttccgccaatgagttctatgtactccaatatccgttgaggtccgaatggcgtccctatggattggatgaaagatgccaagacgtgaggttgagaccttcatcggcagaaatggaagttgatttggcaatagattttgattctaaaaatttcgacagagactctgtacatgcagcaacaataaaaaaacagattgtttctacaaaatgggtgccatcatctacttgcgctgactttgctgttgggatcttgattggtgataagttccacctcaatcctgttcatgcagttgtacagctccgaccatcactgcagcatcgtaaggaaagtgagttgaagaaccttaccaccagcaatgatgaaaaaagttgtgaaaacgaagacgtcaaggagaaaaagcctgtgggtccgtcaaagaagcagaacaaactacctgggaactacaaggatattggagagcattggttacatctaaaataccatgggactaggagtgacatttcagccagacatcttcagaaaatggccatggagggaggctccccagtaccattttcaatgatcccgagtgattatctgaacgccatttgtcctgcaagaccaactgacattgacagattaagaaatcttagaacaaggttgtctcagaaaccttttgaagaacgtgttagaacttggcttcttgagggacctccaattcatcgttttgatactctaaagcacctagctccagataatcctgttgatgagattctggaagttctcaaaagttgcgcacaattagttcaaggattgtgggttgcaaaaagttcgttagtctatgacacaaacaacggagttgaagttttagcgaggaattttgttctttatgagtttaccaagagtactttaatcaagaagtcagtgtttggcaggaggcctgaattccttaaagctgcgacaccagttctaaaatcattagctgttgagaggcctgacctggatgattggaagctcaaagagcttcctgacaagaaatttgaaaacctttatggtgatgttgttagagagcagcaagctatctgggagtccatggggaaacagatcaatgatattatgcatggaggaagaaacaggcctactttgaagaatcctctaaacccaaaggccaacattcctgcgttgtcaagtagtgataagcccactcctacgacatttttgagaacatctctgtcagaagaaattcgtggagctttaccaaaggcgcttcaaaatgtttttagaatccataaggtttgcagtttgcttcaaatttgcgaactgatggaaaaggaagatccaaagaaagctataatttcacccgcgggtgtttctgatgcacatcaaaaggagatagaggcagtggttaatcagattgctgtaaacatccacggtgtctatgttttgaagtcatcgccagataatccacagtatgatgcattgaggaaagttgtaattgatctttttatggccgaagggtcgactgcaaagctaaagaaagcatctatagttgaagctgccaagttgcaactgggaagggatgttaccactgtggagtttcaaaaggttatgaaggaactatgtcgttcagaaaactcagcgtgggttttgggaagcagtgacagcaatccacaacagtagtctgctatttttgattaagttgtacaggtcatggaaagttcactgctagctgcagaaattctcaatgctgaggagaagttggcttttcttgaagtttcactttactcttgagaggcttaattgttcagttttgaggttaacaggagtctcgcgtatatggttgagctgttgaaacgcttcgcggtgcatttgcaaatctgggatgtcaagccttttttgctcattcttttatcattcaattcattcttttcatgaacgaaaatatagtcagatgtttcttttcaatgtcttgaatatctctgttaaaatgtatgaattgttgcatctctctacttgcagaagaaaatcattcagcatctttgtaccatcagaagaaaaatataagttaaaaagtttgccattcttttaattatatacgtatttgattcactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="47644" stop="91202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47944" g_stop="48308" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48309" i_stop="48397" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48398" g_stop="48466" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="434" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48467" i_stop="48605" i_length="139">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48606" g_stop="48713" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="542" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48714" i_stop="49620" i_length="907">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49621" g_stop="49692" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="614" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49693" i_stop="50319" i_length="627">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50320" g_stop="50478" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="773" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50479" i_stop="51071" i_length="593">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51072" g_stop="51107" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="809" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51108" i_stop="51362" i_length="255">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51363" g_stop="51469" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="916" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51470" i_stop="52479" i_length="1010">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52480" g_stop="52551" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="917" r_stop="988" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52552" i_stop="54910" i_length="2359">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54911" g_stop="54959" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="989" r_stop="1037" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54960" i_stop="55091" i_length="132">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="55092" g_stop="55684" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1630" r_length="593" r_score="0.983"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="55685" i_stop="56946" i_length="1262">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="56947" g_stop="57129" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1631" r_stop="1813" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="57130" i_stop="57202" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="57203" g_stop="57323" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1814" r_stop="1934" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="57324" i_stop="60899" i_length="3576">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="60900" g_stop="61445" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1935" r_stop="2455" r_length="521" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E746518" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>2480</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47944" e_stop="48308"/>
          <exon e_start="48398" e_stop="48466"/>
          <exon e_start="48606" e_stop="48713"/>
          <exon e_start="49621" e_stop="49692"/>
          <exon e_start="50320" e_stop="50478"/>
          <exon e_start="51072" e_stop="51107"/>
          <exon e_start="51363" e_stop="51469"/>
          <exon e_start="52480" e_stop="52551"/>
          <exon e_start="54911" e_stop="54959"/>
          <exon e_start="55092" e_stop="55684"/>
          <exon e_start="56947" e_stop="57129"/>
          <exon e_start="57203" e_stop="57323"/>
          <exon e_start="60900" e_stop="61445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAGGTAGATTTTCTTGATTCAATATACGTCTGTTTTATTGTTGAATTTGCAAATTTTTCTATTTGTGAAGTATATTTTCTTTTCTTTTTCAGTTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGATGTGAGTTACAACTGCTTTTAGTGTTTTCCTTTGAACAAATTGGTCACTGTTATGTGATATTGCTAAAGACAGGAATTGATTGGCTGGTTTTAAATGACCAGTTTGGATGTCTAAAATCGATTTTTTAATCATTTTGCAGGTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAGGTTCTTTTAGAGCTATGGAAGCTAGACTTTTATTGTTTTTTCTCTTCTTAAACCAGCAATAAAGACAAAAAAAAGAATCTAGGTGATTTATTTTTATATGTGTAAGACTTGTGCAGGAGCTACCAGCTACATTTGTTGGTTAGGGGCATATTACTTAGTCGGAAAAACATTGCAGCTCTTTTCGTCATGTCGCTTTCCTTTTGTTTGGTAACTCTTTAATTTTAGCATGTTTAAAACCACAAAATGAAAGGACATTTAGTCCCTTCTACCTTTTCTTAGTTTACGACCACAAGATTCAAAACTCTTCATATCTTAAACTATGTGCCAAGTCGAAACGAGTCAAACAAATTAAAATGGAGGGAGTATTACATTCCTCCCATTTCTCTGCCTTAAATTCCATTTGTAATACCATCTGTTTTGGGCCTACTCCTTGCTCTTAATGGACACGTGTATATACAGACAAAGGCAGACCCGCGTGTGGGAGGAGGTGGGGTGGGGGGTCATGGGATCCTGTTGACTTTAGGAGGAGTCGAGTGTTCAATTTTGTTTTCTTTAAGCCTCAATTTTCTTAACAAAAGAGGCTCAAAAATTTTCAAATGTAATGTTTAGAGCAAGAGTCGATCCTACACCCTTTACAGAGCAAATGAGGTGTTGGAACAAGAATCACTTTGTTAAGCTTTGTCATTTTTGCTTAATATATCCACTTCTTTGTAATCAGGTGGTGTCACATTCAACATGCATTCGACTTCACGGTTGTAACTTTGTTGTTAGTAGTAGGATAAGGAGGTTGTATTTTGAGAACTTTGACAATTAGAGTCTGGAAACTCCGCACTTGATATTTGTTCCCTTAGCAGGAATTACAGTTCTAATTGTTTGACCCAGAATCTGATTGGTTCTGAATTTCTAGATTGTTTCTACAAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGTTGGGATCTTCATTGGTGATAAGGTAAATGATTTGTTGTTGATGGCTTGAATGCATATTTAGCATCTGGTCTCGTGGAGTTCTGATTGACTAAAAGTTAGTCCTTCACAGGTTTTATATGTGCTTATCCTGTTCTGCTTTTGTCCTTTTTTTGTAATTATTAAAAAATAACTAATTTGGACCAGAACAATATCGGGCGGCTACACTCTCAACCTCAAATGTAATCAAGTCAATCTTTTATCAGCTTCAAGTTGAAGCAAACTATTTGCTGTCTGCTGTCAAATCTAACTCAACTGTTACCTATGGAGTTGGAAATTGTTATAATACCTCTGGCTCTCTTATTTAGCCCAAGTTCTGCCACTTAATATTAAAAAATTGTCAAGTCCTAGTTATATTCTTCTGTTTCTTATATAAATTGGTGTGAGGAACTTCAAGTAAAATCTCTAAGTTTGATGATAACTATCTGAAGCTCATTGCTGCAGTCAAAAGAAAAAATATACTGTAAAAATGCTTTTTACTTTTCAGTACAACCTATATACTGTACTTGTCAGTATACACAAATGTTACCTTCTCAAAAAAATTGATAAAATAAGTATCAAAGCTTATTAATGTTCTCAATAGTCACACTCTTGCTTCCTGTTTGTTATGCAGTTCCACCTCAATCCTGTTCATGCAATTGTACAGCTCCGACCATCACTGCAGCATCGTAAGGAAAGTGAGTTGAAGAACCTTACCACCAGCAATGATGAAAAAAGTTGTGAAAACGAAGACGTCAAGGAGAAAAAGCCTGTGGGTCTGTCAAAGAAGCAGGTTCATTCATGATTTGCTATTTGATGCCAGCTTCTAAGCTCAACTTATATGAACCTTGTATACAGTTACCTTTCATGTGATATTATGGTACATATCAGTGGCTAGCACTTAAAATATCATATGTCAAGGCTTTTCCCCTTCTCCGGTTAACTTCATTTTTTGAACCGAGGGTTTATCGGAAACGATCTCTCTACCCCACAAAGGTAGGGGTAAGATCTGTATACATCTTAGTTCTTACCGTCCCAAACCACACTTGGGGGATTACACTGGGGGATGTAGTTGTAGTATGTTAAGGACTTCTTTGTTCCTGATTTACTAGCTTTGCCACAATTTTGGATAAATAATGATAAAAGGAATACCTAAAGATAAGTCTTCTATGGTTAAGCACTTTCTGCTATTTTCAAGACTTCTTGTCTAGAATGGTGAACTTCACAATCTTACCCAGGACTCAGGAGCCCAGTATCTGCCTTCCCAGTTTGCCTCACTTGGTGACCTGATTCAACCCTATCCCTCCCCTGATGCTGTTCAAACTTTTCGTATAAGTGCTTTACCTTTTCTTTGATCTATTCTTGAAACACGTATCCTTTGTGCAGAACAAACTACCTGGGAACTACAAGGATATTGGAGAGGTATGAACACCTGTTAACATGACAAAATTTCCGCTTTTCAGTATTAGCTAATAACTCTTCATAATGTTCATTTGCTTGAGTGGCTGCCGTTTTTTCGTCTACAATTTTGGATTTGACGTTTCTGTTGCAAGTGTTTTCTATTTATTTGTACTCAAGAGCAGTTAACTTTCTCCATGCAGTTGCCAATATCATTTCAAACAGTTTCATTAATGCGGATCCTTGACTTATTGATATCTGTTTCATTTCCTGTTTTAGCATTGGTTACATCTAAAATACCATGGGACTAGGAGTGACATTTCAGCCAGACATCTTCAAAAAATGGCTATGGAGGGAGGCTCCCCAGTACCATTTTCAATGATCCCGTATGTATCTGCTAATATGGTTGATTTTTCTTCGCTTGAGCCATATATATTTTTTGCAAACTGCTTCTGTTCTGGACAATTAAAAGATACATTTCCTGCCTCAGAGCATACATTTATCTACTCTCATTCTTCTATGATGAACTAAGGGTAATTCACTAAAAAGCATCCAGAAGATGCAAGCAGAAAATTACAAGAGAGGGAGATAGTGTCTGCTCGTATCCTCATACCACTACATACCCAGTGTTATCCCACAGAGATAGTGTCTGCTCATAGCCTCATACCACTGCATACCCAGTGTTTTCTCGCAGAGATAGTGCCTGCTCATAGACACACTAAAACACTATTCTATCACTAAGGAGTAGTGAACAACAACACACCCAGTGTAGACCAAAAATTGAACACAACTAGTTACAGGGGCCTGATTGAGCCAACTATTACAAAAACAAATTCAGTAAGTATTTTGCTTTGAGTACACGAGTAGGAGTTGAAATCCCACAAAACATCTATGATTCCATTCATTCCCCATGTACCAAAAAATAGCAGCAGAGACTGTTTCCTAAACACCAGCTTTCATACGCTTCTTGATGCTGTAAGGCTTGACCCAAGCTAGTCAACAACAACAACAACAAATCCAGTGTAATCCCAGAAGTGTTGTCTGGGAGGGTAGTGGGTACTCAAACCTTACACCCCTACCTTGAGAATATTGACTGTTTTCGATAGGACCTTTTGCTCCAAAAGATATGTAAAAGAAGTCAAAACAACAGCAAGATAACACAATAATCTAAGAATATTAAAATACATGAATGATACTACTGCGGGAATAATATCTACTAACCTTCTACTCTAATTGACCCAGGCTAGTGCAAGAATAGAAAAGAACATGCTCCAAATATCATATGCTACTGAACGATGCAAAAAAAAGATTTCTTAACACTTTCAGAATCCAAATTGCACATCTACTCTCATTTTTATTCTAATACCAGTTTTCTTCCTGCAAATTTGATACACAGGAGTGATTATCTGAATGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAGGTACTGCAGACACTTTAGTTGGTCCTTCACATCTATTGTTTTGACATTGAAAGGTCTGGAGGTGCTGCTAAAGACAAAAAGAAAATTTTATTTACATCTATGATCGTAGAGCTGTCTTCTTCTTTGATATGTGGCGTAATCATCCTCTAGTATTGTTGGACCATTCAACTAACTGCAAATTATCATCTTCTTTTTCAAAGAAATCACATATTACTGTAATCTGTTTCCTTATCTCCCCCTTCCACTTTATTTATTTAATTAGTTAATCTCTTTTTGCTTTCTGTACAATGTTAAGATGAGATTTTGATGATCTTTGATTACTTGTTGATAATCTAGTTTTTAGTTAGCAATTGACTCGTCTTTGGTTGATGGACTGGTAATTTCCTACAGTGTCAGAGATTAGATTCACATAGTAGCTTAAGCCTAGGCACAACGTCAATGGATGTAATTCTGATTGACTAAATTTGTAGATCAAATTGGGAAGGAGAACGTTTTTCTGAGATGGGGAAAAATCTCTCTAGTGGCGGATCCAGATTTTTTCACTACAAGGGTTCAAAAAATGAAAATGTAGTACTTGAGATTTGAACTTGGAACCTCATGGTGAATTTTGAACCCCCTCAGCCAACGTCATCTTATATTTAGGAGGTTCAAAATCTCTATATGTACACAAAAATTTAAAAATATCCAAATGGTGTCATTTTTAGTCGAGGGTTTGGGTGAACCCTCTAGATCCACCTTGACATGAATGCTTCTGCTGGCTTGGACTCAGGGGAGAAAGGAGAATTTCACTAACAGATCAAGTTCAACAAAATATTGTGGAGGGGATTTCTAAAAATGCAGCATTGGGAGGTTTAGCTAATCTTTGACGATGTGTGATGTTGGATCAAATAATATTTTGGGGGGAAAATTAGTAGAGAATGTGAACACAAGAAAATACTGGAAGCTATTAGGTGCTCAAACTCTAAGGTCCAGTCTGTCCCCCCACCCCTCACCCCACCCCCACCCATTTTGATGGTTGAACTTGGTCTATATTTCGGTCAAGTACATATTGGTGTTCCCTCTAAGGTGTGCTTTAGAAACAATCTAGATTCTGAATTCTCTCAGTATTGCATATGTCAGTCAAAAGTTGGAAAAAAGTCTCCAGTCTGCTGGGGCTATGAAGATTTTGATACTAACACCATGAAGTGGTAGGCTAAGCAGGAAAAGGAGAGAACTCAGACTTGAATTGCGAGGCAAAATTAAAGCGTGCATTTTACTGAAGAAAACTGAATCAAGACCATAAAAATTTAAAAAAGTTATACTTGTAAAGATAAATTAACTATAAACACAAACAACTATATGGACAAATCAAAGCAGACAGGTGTCCTGACTTTGAGCTTCACAACCACCATTACGAAAAAAATTCCTCGTGCTTGACCCATGGAAAAGAATAAGACTTGCATGTTTGGGGTGTGTTGTAAGCACGACTAAATAAATAAGAGTATGCTCTGTTAATCCGCCTCAACTTTTAGATGAGGTGTTCACTCACTCCAACATCTATTTTTATAGTATATGCAGGAAGCATTGTTGTCCCCGGTTTATAAAAAAATGTGTTACGGAATTAATTTTGGCATTGTGGTGGTAGGTGGGGGTGGGGGAGGGGGAGAGGGAGAGTAGGTTAAAGGCTTAAAGCTTTGTTGCTTTCTTGGTTTGTCATTGTAATAAATATGAGCTGTATGAAATGCAAGTTTACATTATGCTTTGTTTGCTAGAGAACCTAATCTTCCAGAAAGTAGTTTTTGTTCTCGATGTTCTAGCAATGAAATAAATAAGAAAACATGGTCTTGCTTCTTTCTAGTTTTGGAGTGATTGGCAGATCTACAAAAATCTTCGGGGCATTTTTATGTGATAAATCTTATTTCCATTTCTTTTGTTCATCACTTCTTGAGGCCGAGGACGGGAGTGGACTGTTGTTCCAGAATATGCTGTTGGATACATTTTCACCATGTTACTTGGCCAAACTTGCACCTCACTGGTCATCTTATCCTTGGTGTTCTACCTTTGTCATCTATCAAATTGATTTCTTTTCATTTAAAAAGAACTTTGTTCTAAATAGCCATCAGTTGTTAAAGTTGATTCCTTGGAATTAATTATTATTGACTGGTGTGACTTGTATTCATTCTAGGTGTGCTGGTGTAGTAAAATATAAATATGCAGTTTCTCTAGCCAGAAGTTTGCTGTTTCTTCCATTCAGTATCCAAGCCATGTAGAATAGATATCAGTACTGGATATGCCATATTTCTCAATTATGTTAAATTAGCATTCTTTCCCAGTCATTTTATGCTCCTAACTTGTAAATTGCCAAATGGATGGTTTTCAGGTTGTCTCAGAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTCTTGAGGTTTGTACCTACTATTTGGATTTTGCACTGCTTATATTTTTATGCCTGCAAGGCTGCAACAAAGTTTGTTTAGATGGCCCCATGGTGCTTATAACTCAGCACATTTCTAAATATGAATTCTTTTCGCAACAGGGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTTTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCAAAAAGTTCATTAGTCTATGACACAAACAATGGAGTCGAAGTTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTAATTAAGAAGTCAGTGTTTGGCAGGAGGCCTGAATTCCTTAAAGCTGCGACACCAGTTCTAAAATCATTAGCTGTTGAGAGGCCTGACCTGGATGATTGGAAGCTCAAAGAGCTTCCTGACAAGAAATTCGAAAACCTCTATGGTGATGTTGTAAGAGAGCAGGAAGCTATCTGGGAGTCCATGGGGAAACAGATCAATGATATTATGCATGGAGGAAGAAACAGGCCTACTTTGAAGAATCCTCTAAACCCAAAGGCCAACATTCCTGCGTTGTCAAGTAGTGATAAGCCCACTCCTACGACATTTTTGAGAACATCTCTGTCAGAAGAAATTCGTGGAGCTTTACCTAAGGCGCTTCAAAATGTTTTTAGAATCCATAAGGTTTGCAGGTGAGGTCTCTGAAAATGACTTATGAACTTTCTGCCTTTGCTGTTTATTATATAGTTAAACGTAATTTTAGGTATTCATAATTGTTAGAGCATGCAGAAACCTGGGTCAAGCAGGTGGTTTATTGACCTTGGTTTGATTGCTCAACATTTTTACAATTATTTTGGGGCTTTTTAAAATAGCTATTCTCCCTTTAACTTCTGCCACCTGTTGTCCTCCCTTTCTGTTTGGGTCAAGAACCCTCACCTTTTTGTGGGTAAACTGTAAGTTACCTCTTTATTCAATTCTTCCTGATTTCACCCTCCATTTATTTGATTGTTTCATCCTTTCTTTTCTTTTTCTTTTGATGAAGTAAGAGAATTTCATAGATGGCATCAAGAAGATGCAGAGATTACGAAAGTAAGTAGATACTCAAAAGGTTATCAGCCATAGCCGCTACAAAACTAAGCTAATGCACTCTTAGACTACAACTCTAACCAATCGACATGATTAGACTTCTCCGGCGACTCCAAAGTCCAACCAATACGTATTTCTTCTTCCTCTGTTTCTTTTTTCTTTCATCTTCTTTAGACTTCAAAGTTCTTCTACCTCTGTTTTTTTCTCTGTTGGGACTTCTGTTCTGTTTTTTTCTTATTCAAGTTCTAGACTTTTTTAGTATGTACTATCTATTTTTAGTTTTTGAATTAAAATATTTGCTAATATGCTATTGCTATTGAGATTTTGATTATTTATATATGCAATTAAATATCTTAATTTTTTTATATTTATTGGCGCCATACTTCAAAAGGCGAGTGCCCTTGCCTTGTTGCGGGCCAGACCCGTTTCGCCCTTCACTGACCAAAACACTGGTATGATCAGTCTTCTGAAAAGATGAGATGGTCTAGTTATAGGACATTTCTTTTTGCTTTGGAATGTTTTGATACCTTTGAGCAGTGGTATCACTCAGAGTCCTGTTTATATTGACTTATTGTTAGAGGTGAGCTGTGCGAGGATTTAGGTCGAAATTGTCCATCGCAAGATTTATGTTGCCTTTTCAGTATGTTGTATATCTACTTTACCTTTCTCGAATGGTAATGTATCATAACATAGAATATACAACATTGTCTTTTTCCTGTGCTCCTCATCTGTCTGAGATTTAGAAGGAACAGAGTAATTTCGTTGTTCAAGAAAAAAAACAAACTGTGCACTACTTGTTTTATTTACCTGATCCATCTAAACTTGTGACCCCTAACCAATTTAGAATCTACTGTTTACTTTTTGCCAGTTTGCTTCAAATTTGCGAACTGATGGAAAAGGAAGATCCAATGAAAGCTATAATTTCACCCGCGGGTATTTCTGATGCACTTCGAAAGGAGATAGAGGCAGTGGTTAATCAGATTGCTGTAAACATCCACGGTGTCTATGTTTTGAAGTCATCGCCAGATAATCCACAGTATGATGCATTGAGGTTAGTAACTATTGCTATATAACTAACACTTAAACACCTTGCTCCGTGGCTAATACATAGTTTTTGTTCTCAGGAAAGTTGTAATTGATCTTTTTATGGCCGAAGGGTCGAATGCAAAGCTAAAGAAAGCATCTATAGTTGAAGCTGCCAAGTTGCAACTGGGAAGGGATGTCACCACTGTGGAGTTTCAAAAGGTGAGTACTTTTCTTACTTGTCATGAGAATTAAGTTATATCTTCTTTGACTTTATTGTATGGGGTTTCAGGTAGTGGCAGAAGTCAATAATTGAACAGTTTTTTTAATCATAGTTGATGCAGCGATTTCGATTAGTCAATCAATCAAATATGCCTACTTCGGGTTATTTAAATACTTGTAAGAAATTTGTCTTGAGGGCATATTTTAGGGGTCTCAAAAAATAGAGGTTCTCTATATCTCAAACTTGTATGTACTCGAACCTAATGTATGTGTAGCTACAACCATGAAAGCTTAGTACAAGTAGTTCTGTAGTTGTATTCTATCTAACCAAGTCCACATTAACTCCAATTGATTTTAGGTCTTTGATCCACCTCCAAATAATTTTAGGTCTATTTCATCTTTTTAACACTTTCAATCACTAGAATGCACATATGAACTGGTAACTTTCATGGTAAAGAAGCGTTTCAATGTTTCATGGACTTGCAAGTAATGGGATGTCGATGGAGGTTTTGTTGGATTTGGTCCTATAGATTGGTGAGACTTGACCCTCAGATAACCCCCAAGAAAGATTGTTTCAAGTACATTGGGTCTCTAATCCAGGGAAGCTGAGACATTGATGATGATATCATACATCGTATTAGTGGGCGTGAATGAAGTGTAGGCTTGCATTCAGAGTCTTTATGATAAAATGGTATCATCAAAACTTAGAGATAAGTTTTATAAAATGATGGTTAGACCGACTTTGTTGTATGAAGCAGAGTCCTAACCAATCAAGAACTCCCATGTTCAAAAGATGCATATCGCGGAAATGAGGATGTTGATCAAGAACTCCCATGTTCAAAAGATGCATATCGCGGAAATGAGGATGTTGAGGTGGATATGTGGGCACATATGGAGCGATAAGATCTTGAATGAGGATTTTTAAGATAAGGGGGGAGTGGACTTCGTGGTGGAAAAGATATGAGGGAGGCGAGATGAAATGGTTTAGACATGTGTAGAGGAGATGCGAAGATGCTCCAATAAGGAGGTGCAAGAGGTTGATTATAGTAGGGTACGAAGAGAGGTAGAAGTAGACTGAAAAAGTATTACGGAGAGCTAATTAGACAGGATATGACTCAACTTCGGGTTATTGAGGAAATGGCCTTAAGAGTTAAGATAAAAGGGTGTGGAGGACGCGTACTAGGGTAGATGGTTAGTAACCAGGAGTGTTGTCTTGCTTTTCGAGGGTTTTAGGTGTGTTGGTGTTTGTCCTCATACTGATTGTATTATTGTAGTTCTTGCTTTTGATATCTATCATAATTTGTTGTTTAATGTGTTTCGGTTAGAGCATTATTTTGTTCTTGTTCCTTTCTTGTAGGATTTGCACTGCTTCCTTGTTAGTTCTATGTTTTCCCCTCCACTGCTTTCTTACTCTTTGTTTGGATTTACTAAATTTGAGCCGAAAGTCTTTCAAAAAGCAGCCTTTCTACCTCCATGAGGTAGCGATTAGGTCAGTGTACACTCTATCCTCCATAGAACCCTTTTGTGGGATTCAGTGGGTATATTGTTGTTGTTGTCTGCTAGTTAAAAAGAATTTCCTTTTTAATTTTCCATTGAGTTTCAAGAACTGTTATTTTCTTTTTTCCCCTTCTTTTTATTATTATTGGATCTATGGTTTGGAAAGTTTTAATTTAGGGTGTGTGTTCGTTACAAAGGGAAATGCTTTTTTGAAAAAAGTCAGTTTCTTATTTTTCCGTGTTTTTAGTATTTAAGCAAAACATATTATTTTAAAAACATTTTTACATACTCTAGATAGTGAAATACTATGGAGATGGGGTTGTAGGTGTGGTGGGGATGGGGATGGGGCTAAGAGGGATGGGGTGAAGATGAGGTGTGTTGTGGAGGGTAGGGGAGATTAAATCAATGTGAAATCCCACTTTTAGAACTTGTTTTCCCTACTTTCCACTAGGCAAGTCATTTTCCTCATTTTTTTTCCACGAAGTTCCTCATTTTCAAGGAACTTGTTTTCCTAGAGAAAATGATCTCCAATTTTTTTAACCAACTGTACAGGGGAAAATGAGGAAACATATTCTGGGTCTTGTTTTCGTCCATTCCGGACACACCCTTATGTTCAAATTAATGACTGTCTTTTTCAAATTACTACAGGTAACAGAAAAAAATTGATTACGACAAATGTGAAAGTTCACCACAGACCAAGCTAATCATGTAGAGAAAACTGTGCATGATATTTTTTTTCATGGAACTGCTCTGTGTTTTAGCTATCAACGTAATCCTAGAATAGGAAATGATCTTCGGCACTGTTTTATGCAAACTGCTCATTTGTTATAAAATTAAGCCGATCAGACCTTTTTTAAAAAATAATAATTTTGAAGACCAAGTTAAGGTGGAATGCAGTATGTTTTAATCTCTTCTCCACCCCTCCTAGTACCATTTACCCCTCATATTTTTATGACTTGCAGCAGTGGTGATTTTGCACATTCAGATAACTAGAGACCAGAGAGAACAATATAAAAAAGGAAATGGAAGTGTAATCACCTATCTGTTTAGTATGTGCAAAGAAGAGAAAGAGACAGTCTCCAATCAGCTTTTTATTGAGGAGTGAGTGGAGAAAATTGTTTCCCAGTAGGTCTCGTAAAACAATGGCTAGACAAGTAACAAACCTCTTATCTATCCCAAGCTAGCTCTCATAGCTCCCCTGATTTTAAACAGTACATGTTTCTACTTTTGGGTAAACCACTAAAAACTTGTTATAAAATTACTTTAAGAAATTTAAATTTTGTAAGTTTTATATTGGAACTTCACCCTTCATCGCAGATGTTTCTGACCTTTAAATTGGGGTGTTATTATTTCATGCCTTAGTCCTGTTTGAATGTTTAGAGATGATCAAAGACATTTTCTGGAGTACGATAAAAGTTGGCAATTCTGCCTGACTATGCCAAATGAGTTGGAGATATCACTGCAAAAGAAACAAAAATGGCAAAGTTAACACTAGCATTTGACAGGATGCATTTCTTATCCTCTTTTGTATGGTGTGGTGATGTTTCTACCTCAGGCTTTGTTTTTTCTCCTGGCCTCCTGTCAGGTTTCTCTGTATTGCTCTTCTTTTATGTAAATTGGATCCAAGCAACTCTGTCATGATCCTGCTTATGTGCTGACACAGGCGGCTTGGCCTTGGAAAGTTATTGGGATTTAAATAACTTGGACATACGTGCACTATATTATGAAGTTGATCTATTTACCAGCACATGCAGATGTATCCGATAGATGTTTGCAGTATCCTGTTTCCGATCCTCTTATCCCAGTTCCCCATTATTTTTTTCCTTTTCTGATAGAATATAAAATGTGACAGTTCCAAACTTCCATGTCATCTGACTCTATACTACACCTATTGTGGTCTAGAATCTTTCAAGTTGCCTGGAACTTTGTATTGTGAAATATTGGCGTTTTGTCATATTGCAGTGAATTTTAAAAAATTCGTGCAGAAGCTTCATTTCTTTTGTCTAATTCCTGATGGAAAAATATAGAAAATCTTTTCTTGACGACATGAATCCTATATATTTTTCTATGCTTGTGCAGGTTATGAAGGAACTATGTCGTTCAGAAAACTCAGCATGGGTTTTGGGAATCAGTGACAGCAATCCACAACAGTAGTCTGCTATTTTTGATTAAGTCGTACAGGTCATGGGAAGTTCACTGCTAGCTGCAGAAATTCTCAATGCTGAGGAGAAGTTGGCTTTTCTTGAAGTTCCACTTTACTCTTGAGAGTCATAATTGTTCAGTTTTGAGGTTAACACGGAGTCTCGCGTATATGGTTGAGCTGTTGATACGCTTCGCGGTGCATTTGCAAATCTGGGAGAAAATTTAGTTAGGATTAGCAGATGTCAAGCCTTTTTTGCTCATTCTTTTATCATTCAATTTATTCTTTTCATGAACGAAAATATAGTCAGATGTTTCTTTTCAATGTCTTGAATATCTCTGTTAAAATGTATGAATTGTTGCATCTCTTTACTTGCAGAAGAAAATCATTCAGCATATTTGTACCATCAGAAGAAAAATACAAGTTAAAAAGTTTGCCGTTCTTGTAATTATATACGTATTTGATTCACCAAGTTGTCAAATTTC</genome_strand>
        <mrna_strand>TTCACTTTTCCATCCAGAAAATTGCAGAGATGGATTTGGACTTCGACGGTGCAAGTAAAGTCCCGAGCAGGCAAGCCCGTTTTGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGCGAAACACTGCCATTGAAGGTAGATTCAGATATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAACAGTTGAGGACGACGTTCCTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAG.........................................................................................TTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGATTGGATGAAAGATGCCAAGAC...........................................................................................................................................GTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTCTACAAAATGGGTGCCATCATCTACTTGCGCTGACTTTGCTGTTGGGATCTTGATTGGTGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACCTCAATCCTGTTCATGCAGTTGTACAGCTCCGACCATCACTGCAGCATCGTAAGGAAAGTGAGTTGAAGAACCTTACCACCAGCAATGATGAAAAAAGTTGTGAAAACGAAGACGTCAAGGAGAAAAAGCCTGTGGGTCCGTCAAAGAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACTACCTGGGAACTACAAGGATATTGGAGAG...............................................................................................................................................................................................................................................................CATTGGTTACATCTAAAATACCATGGGACTAGGAGTGACATTTCAGCCAGACATCTTCAGAAAATGGCCATGGAGGGAGGCTCCCCAGTACCATTTTCAATGATCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGATTATCTGAACGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTCAGAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTCTTGAG....................................................................................................................................GGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTCTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCAAAAAGTTCGTTAGTCTATGACACAAACAACGGAGTTGAAGTTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTAATCAAGAAGTCAGTGTTTGGCAGGAGGCCTGAATTCCTTAAAGCTGCGACACCAGTTCTAAAATCATTAGCTGTTGAGAGGCCTGACCTGGATGATTGGAAGCTCAAAGAGCTTCCTGACAAGAAATTTGAAAACCTTTATGGTGATGTTGTTAGAGAGCAGCAAGCTATCTGGGAGTCCATGGGGAAACAGATCAATGATATTATGCATGGAGGAAGAAACAGGCCTACTTTGAAGAATCCTCTAAACCCAAAGGCCAACATTCCTGCGTTGTCAAGTAGTGATAAGCCCACTCCTACGACATTTTTGAGAACATCTCTGTCAGAAGAAATTCGTGGAGCTTTACCAAAGGCGCTTCAAAATGTTTTTAGAATCCATAAGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTTCAAATTTGCGAACTGATGGAAAAGGAAGATCCAAAGAAAGCTATAATTTCACCCGCGGGTGTTTCTGATGCACATCAAAAGGAGATAGAGGCAGTGGTTAATCAGATTGCTGTAAACATCCACGGTGTCTATGTTTTGAAGTCATCGCCAGATAATCCACAGTATGATGCATTGAG.........................................................................GAAAGTTGTAATTGATCTTTTTATGGCCGAAGGGTCGACTGCAAAGCTAAAGAAAGCATCTATAGTTGAAGCTGCCAAGTTGCAACTGGGAAGGGATGTTACCACTGTGGAGTTTCAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGAAGGAACTATGTCGTTCAGAAAACTCAGCGTGGGTTTTGGGAAGCAGTGACAGCAATCCACAACAGTAGTCTGCTATTTTTGATTAAGTTGTACAGGTCATGGAAAGTTCACTGCTAGCTGCAGAAATTCTCAATGCTGAGGAGAAGTTGGCTTTTCTTGAAGTTTCACTTTACTCTTGAGAGGCTTAATTGTTCAGTTTTGAGGTTAACA-GGAGTCTCGCGTATATGGTTGAGCTGTTGAAACGCTTCGCGGTGCATTTGCAAATC----------------T--G----G--GATGTCAAGCCTTTTTTGCTCATTCTTTTATCATTCAATTCATTCTTTTCATGAACGAAAATATAGTCAGATGTTTCTTTTCAATGTCTTGAATATCTCTGTTAAAATGTATGAATTGTTGCATCTCTCTACTTGCAGAAGAAAATCATTCAGCATCTTTGTACCATCAGAAGAAAAATATAAGTTAAAAAGTTTGCCATTCTTTTAATTATATACGTATTTGATTCACTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417761" ref_strand="+" ref_description="SGN-E417761 [STM-26-E13]">
      <seq>ttcactattccatccaaaaaattgcagagatggatttggacttcgacggcccaagtaaagtcccgaacaggcaagctcgtttcgctcccaagaattccaaattgaagccccaacccaaaagtgaaacactgccattgaaggtagattcagatatttcgactaaaaaggaagaattgctatctcaacccccactaagagatcatatagggaaaaacggagaggcaacggttgaggacaacgttccattgaatggagatactacgggaaacgaccttgcagaagaacaagtcacaatggaaactgatagcgatcgagatgaagttgtccgtgaagttgacgtgtggcttaccccttccgccaatgagttctatgtactccaatatccgttgagatccgaatggcgtccctatggattggatgaaaaatgccaagacgtgaggttgagaccttcaacggcagaaatggaagttgatttggcaatagattttgattctatgaatttcgacagagactctgtacatgcagcaacgataaaaaagcagattgtttctacaaaatgggtgccattatctacttgtgctgactttgctgttgggatcctcattggtgataagttacacctcaatcctgttcatgcagttgtacagctccgaccatcactgcagcatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="47644" stop="50676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47944" g_stop="48308" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48309" i_stop="48397" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48398" g_stop="48466" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="434" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48467" i_stop="48605" i_length="139">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48606" g_stop="48713" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="542" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48714" i_stop="49620" i_length="907">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.665" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49621" g_stop="49692" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="614" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49693" i_stop="50319" i_length="627">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50320" g_stop="50376" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="671" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E417761" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47944" e_stop="48308"/>
          <exon e_start="48398" e_stop="48466"/>
          <exon e_start="48606" e_stop="48713"/>
          <exon e_start="49621" e_stop="49692"/>
          <exon e_start="50320" e_stop="50376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAGGTAGATTTTCTTGATTCAATATACGTCTGTTTTATTGTTGAATTTGCAAATTTTTCTATTTGTGAAGTATATTTTCTTTTCTTTTTCAGTTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGATGTGAGTTACAACTGCTTTTAGTGTTTTCCTTTGAACAAATTGGTCACTGTTATGTGATATTGCTAAAGACAGGAATTGATTGGCTGGTTTTAAATGACCAGTTTGGATGTCTAAAATCGATTTTTTAATCATTTTGCAGGTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAGGTTCTTTTAGAGCTATGGAAGCTAGACTTTTATTGTTTTTTCTCTTCTTAAACCAGCAATAAAGACAAAAAAAAGAATCTAGGTGATTTATTTTTATATGTGTAAGACTTGTGCAGGAGCTACCAGCTACATTTGTTGGTTAGGGGCATATTACTTAGTCGGAAAAACATTGCAGCTCTTTTCGTCATGTCGCTTTCCTTTTGTTTGGTAACTCTTTAATTTTAGCATGTTTAAAACCACAAAATGAAAGGACATTTAGTCCCTTCTACCTTTTCTTAGTTTACGACCACAAGATTCAAAACTCTTCATATCTTAAACTATGTGCCAAGTCGAAACGAGTCAAACAAATTAAAATGGAGGGAGTATTACATTCCTCCCATTTCTCTGCCTTAAATTCCATTTGTAATACCATCTGTTTTGGGCCTACTCCTTGCTCTTAATGGACACGTGTATATACAGACAAAGGCAGACCCGCGTGTGGGAGGAGGTGGGGTGGGGGGTCATGGGATCCTGTTGACTTTAGGAGGAGTCGAGTGTTCAATTTTGTTTTCTTTAAGCCTCAATTTTCTTAACAAAAGAGGCTCAAAAATTTTCAAATGTAATGTTTAGAGCAAGAGTCGATCCTACACCCTTTACAGAGCAAATGAGGTGTTGGAACAAGAATCACTTTGTTAAGCTTTGTCATTTTTGCTTAATATATCCACTTCTTTGTAATCAGGTGGTGTCACATTCAACATGCATTCGACTTCACGGTTGTAACTTTGTTGTTAGTAGTAGGATAAGGAGGTTGTATTTTGAGAACTTTGACAATTAGAGTCTGGAAACTCCGCACTTGATATTTGTTCCCTTAGCAGGAATTACAGTTCTAATTGTTTGACCCAGAATCTGATTGGTTCTGAATTTCTAGATTGTTTCTACAAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGTTGGGATCTTCATTGGTGATAAGGTAAATGATTTGTTGTTGATGGCTTGAATGCATATTTAGCATCTGGTCTCGTGGAGTTCTGATTGACTAAAAGTTAGTCCTTCACAGGTTTTATATGTGCTTATCCTGTTCTGCTTTTGTCCTTTTTTTGTAATTATTAAAAAATAACTAATTTGGACCAGAACAATATCGGGCGGCTACACTCTCAACCTCAAATGTAATCAAGTCAATCTTTTATCAGCTTCAAGTTGAAGCAAACTATTTGCTGTCTGCTGTCAAATCTAACTCAACTGTTACCTATGGAGTTGGAAATTGTTATAATACCTCTGGCTCTCTTATTTAGCCCAAGTTCTGCCACTTAATATTAAAAAATTGTCAAGTCCTAGTTATATTCTTCTGTTTCTTATATAAATTGGTGTGAGGAACTTCAAGTAAAATCTCTAAGTTTGATGATAACTATCTGAAGCTCATTGCTGCAGTCAAAAGAAAAAATATACTGTAAAAATGCTTTTTACTTTTCAGTACAACCTATATACTGTACTTGTCAGTATACACAAATGTTACCTTCTCAAAAAAATTGATAAAATAAGTATCAAAGCTTATTAATGTTCTCAATAGTCACACTCTTGCTTCCTGTTTGTTATGCAGTTCCACCTCAATCCTGTTCATGCAATTGTACAGCTCCGACCATCACTGCAGCATCGT</genome_strand>
        <mrna_strand>TTCACTATTCCATCCAAAAAATTGCAGAGATGGATTTGGACTTCGACGGCCCAAGTAAAGTCCCGAACAGGCAAGCTCGTTTCGCTCCCAAGAATTCCAAATTGAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGATATTTCGACTAAAAAGGAAGAATTGCTATCTCAACCCCCACTAAGAGATCATATAGGGAAAAACGGAGAGGCAACGGTTGAGGACAACGTTCCATTGAATGGAGATACTACGGGAAACGACCTTGCAGAAGAACAAGTCACAATGGAAACTGATAGCGATCGAGATGAAGTTGTCCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAG.........................................................................................TTCTATGTACTCCAATATCCGTTGAGATCCGAATGGCGTCCCTATGGATTGGATGAAAAATGCCAAGAC...........................................................................................................................................GTGAGGTTGAGACCTTCAACGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTATGAATTTCGACAGAGACTCTGTACATGCAGCAACGATAAAAAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTCTACAAAATGGGTGCCATTATCTACTTGTGCTGACTTTGCTGTTGGGATCCTCATTGGTGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCTCAATCCTGTTCATGCAGTTGTACAGCTCCGACCATCACTGCAGCATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446793" ref_strand="+" ref_description="SGN-E446793 [cSTA-23-C1]">
      <seq>ttcactattccatccaaaaaattgcagagatggatttggacttcgacggcccaagtaaagtcccgaacaggcaagctcgtttcgctcccaagaattccaaattgaagccccaacccaaaagtgaaacactgccattgaaggtagattcagatatttcgactaaaaaggaagaattgctatctcaacccccactaagagatcatatagggaaaaacggagaggcaacggttgaggacaacgttccattgaatggagatactacgggaaacgaccttgcagaagaacaagtcacaatggaaactgatagcgatcgagatgaagttgtccgtgaagttgacgtgtggcttaccccttccgccaatgagttctatgtactccaatatccgttgagatccgaatggcgtccctatggattggatgaaaaatgccaagacgtgaggttgagaccttcaacggcagaaatggaagttgatttggcaatagattttgattctatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="47644" stop="48971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47944" g_stop="48308" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48309" i_stop="48397" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48398" g_stop="48466" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="434" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48467" i_stop="48605" i_length="139">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48606" g_stop="48671" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="500" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E446793" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47944" e_stop="48308"/>
          <exon e_start="48398" e_stop="48466"/>
          <exon e_start="48606" e_stop="48671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAGGTAGATTTTCTTGATTCAATATACGTCTGTTTTATTGTTGAATTTGCAAATTTTTCTATTTGTGAAGTATATTTTCTTTTCTTTTTCAGTTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGATGTGAGTTACAACTGCTTTTAGTGTTTTCCTTTGAACAAATTGGTCACTGTTATGTGATATTGCTAAAGACAGGAATTGATTGGCTGGTTTTAAATGACCAGTTTGGATGTCTAAAATCGATTTTTTAATCATTTTGCAGGTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAAT</genome_strand>
        <mrna_strand>TTCACTATTCCATCCAAAAAATTGCAGAGATGGATTTGGACTTCGACGGCCCAAGTAAAGTCCCGAACAGGCAAGCTCGTTTCGCTCCCAAGAATTCCAAATTGAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGATATTTCGACTAAAAAGGAAGAATTGCTATCTCAACCCCCACTAAGAGATCATATAGGGAAAAACGGAGAGGCAACGGTTGAGGACAACGTTCCATTGAATGGAGATACTACGGGAAACGACCTTGCAGAAGAACAAGTCACAATGGAAACTGATAGCGATCGAGATGAAGTTGTCCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAG.........................................................................................TTCTATGTACTCCAATATCCGTTGAGATCCGAATGGCGTCCCTATGGATTGGATGAAAAATGCCAAGAC...........................................................................................................................................GTGAGGTTGAGACCTTCAACGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359122" ref_strand="+" ref_description="SGN-E359122 [cLHT-11-J22]">
      <seq>tcacttttccatccagaaaattgcagagatggatttggacttctacggtgcaagtaaagtcccgagcaggcaagcccgttttgttcccaagaactccaaattaaagccccaacccaaaagcgaaacactgccattgaaggtagattcacatattccgactaaaaaggaagaatttgtatcacaaccccctctaagagatcatatatggaaaaacggagaggcaacagttgaggacgacgttcctttgaatggagagactacgggaaacgatcttgcagaataacaagtcggaatggaaactgatcgcgatcaggatgaagttgttcgtgaagttgacgtgtggcttacccctttcgccaatgagttctatgtactccaatatccgctgaggttcgaatggcgtgcctatggattggatgaaagatgccatgacgtgaggctgagaccttcatcggcagaaatggaagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="47645" stop="48944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47945" g_stop="48308" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48309" i_stop="48397" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48398" g_stop="48466" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="433" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48467" i_stop="48605" i_length="139">
            <donor d_prob="0.985" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48606" g_stop="48644" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="472" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E359122" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47945" e_stop="48308"/>
          <exon e_start="48398" e_stop="48466"/>
          <exon e_start="48606" e_stop="48644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAGGTAGATTTTCTTGATTCAATATACGTCTGTTTTATTGTTGAATTTGCAAATTTTTCTATTTGTGAAGTATATTTTCTTTTCTTTTTCAGTTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGATGTGAGTTACAACTGCTTTTAGTGTTTTCCTTTGAACAAATTGGTCACTGTTATGTGATATTGCTAAAGACAGGAATTGATTGGCTGGTTTTAAATGACCAGTTTGGATGTCTAAAATCGATTTTTTAATCATTTTGCAGGTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGAT</genome_strand>
        <mrna_strand>TCACTTTTCCATCCAGAAAATTGCAGAGATGGATTTGGACTTCTACGGTGCAAGTAAAGTCCCGAGCAGGCAAGCCCGTTTTGTTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGCGAAACACTGCCATTGAAGGTAGATTCACATATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATATGGAAAAACGGAGAGGCAACAGTTGAGGACGACGTTCCTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAATAACAAGTCGGAATGGAAACTGATCGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTTCGCCAATGAG.........................................................................................TTCTATGTACTCCAATATCCGCTGAGGTTCGAATGGCGTGCCTATGGATTGGATGAAAGATGCCATGAC...........................................................................................................................................GTGAGGCTGAGACCTTCATCGGCAGAAATGGAAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416858" ref_strand="+" ref_description="SGN-E416858 [STM-23-F16]">
      <seq>atttcgactaaaaaggaagaattgctatctcaacccccactaagagatcatatagggaaaaacggagaggcaacggttgaggacaacgttccattgaatggagatactacgggaaacgaccttgcagaagaacaagtcacaatggaaactgatagcgatcgagatgaagttgtccgtgaagttgacgtgtggcttaccccttccgccaatgagttctatgtactccaatatccgttgagatccgaatggcgtccctatggattggatgaaaaatgccaagacgtgaggttgagaccttcaacggcagaaatggaagttgatttggcaatagattttgattctatgaatttcgacagagactctgtacatgcagcaacgataaaaaagcagattgtttctacaaaatgggtgccattatctacttgtgctgactttgctgttgggatcctcattggtgataagttacacctcaatcctgttcatgcagttgtacagctccgaccatcactgcagcatcgtaaggaaagtgagttgaagaaccttnaccaccagcatgatgaaaaaagttgtgaaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="47796" stop="50734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48096" g_stop="48308" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48309" i_stop="48397" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48398" g_stop="48466" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="282" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48467" i_stop="48605" i_length="139">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48606" g_stop="48713" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="390" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48714" i_stop="49620" i_length="907">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.665" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49621" g_stop="49692" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="462" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49693" i_stop="50319" i_length="627">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50320" g_stop="50434" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="577" r_length="115" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E416858" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48096" e_stop="48308"/>
          <exon e_start="48398" e_stop="48466"/>
          <exon e_start="48606" e_stop="48713"/>
          <exon e_start="49621" e_stop="49692"/>
          <exon e_start="50320" e_stop="50434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAGGTAGATTTTCTTGATTCAATATACGTCTGTTTTATTGTTGAATTTGCAAATTTTTCTATTTGTGAAGTATATTTTCTTTTCTTTTTCAGTTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGATGTGAGTTACAACTGCTTTTAGTGTTTTCCTTTGAACAAATTGGTCACTGTTATGTGATATTGCTAAAGACAGGAATTGATTGGCTGGTTTTAAATGACCAGTTTGGATGTCTAAAATCGATTTTTTAATCATTTTGCAGGTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAGGTTCTTTTAGAGCTATGGAAGCTAGACTTTTATTGTTTTTTCTCTTCTTAAACCAGCAATAAAGACAAAAAAAAGAATCTAGGTGATTTATTTTTATATGTGTAAGACTTGTGCAGGAGCTACCAGCTACATTTGTTGGTTAGGGGCATATTACTTAGTCGGAAAAACATTGCAGCTCTTTTCGTCATGTCGCTTTCCTTTTGTTTGGTAACTCTTTAATTTTAGCATGTTTAAAACCACAAAATGAAAGGACATTTAGTCCCTTCTACCTTTTCTTAGTTTACGACCACAAGATTCAAAACTCTTCATATCTTAAACTATGTGCCAAGTCGAAACGAGTCAAACAAATTAAAATGGAGGGAGTATTACATTCCTCCCATTTCTCTGCCTTAAATTCCATTTGTAATACCATCTGTTTTGGGCCTACTCCTTGCTCTTAATGGACACGTGTATATACAGACAAAGGCAGACCCGCGTGTGGGAGGAGGTGGGGTGGGGGGTCATGGGATCCTGTTGACTTTAGGAGGAGTCGAGTGTTCAATTTTGTTTTCTTTAAGCCTCAATTTTCTTAACAAAAGAGGCTCAAAAATTTTCAAATGTAATGTTTAGAGCAAGAGTCGATCCTACACCCTTTACAGAGCAAATGAGGTGTTGGAACAAGAATCACTTTGTTAAGCTTTGTCATTTTTGCTTAATATATCCACTTCTTTGTAATCAGGTGGTGTCACATTCAACATGCATTCGACTTCACGGTTGTAACTTTGTTGTTAGTAGTAGGATAAGGAGGTTGTATTTTGAGAACTTTGACAATTAGAGTCTGGAAACTCCGCACTTGATATTTGTTCCCTTAGCAGGAATTACAGTTCTAATTGTTTGACCCAGAATCTGATTGGTTCTGAATTTCTAGATTGTTTCTACAAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGTTGGGATCTTCATTGGTGATAAGGTAAATGATTTGTTGTTGATGGCTTGAATGCATATTTAGCATCTGGTCTCGTGGAGTTCTGATTGACTAAAAGTTAGTCCTTCACAGGTTTTATATGTGCTTATCCTGTTCTGCTTTTGTCCTTTTTTTGTAATTATTAAAAAATAACTAATTTGGACCAGAACAATATCGGGCGGCTACACTCTCAACCTCAAATGTAATCAAGTCAATCTTTTATCAGCTTCAAGTTGAAGCAAACTATTTGCTGTCTGCTGTCAAATCTAACTCAACTGTTACCTATGGAGTTGGAAATTGTTATAATACCTCTGGCTCTCTTATTTAGCCCAAGTTCTGCCACTTAATATTAAAAAATTGTCAAGTCCTAGTTATATTCTTCTGTTTCTTATATAAATTGGTGTGAGGAACTTCAAGTAAAATCTCTAAGTTTGATGATAACTATCTGAAGCTCATTGCTGCAGTCAAAAGAAAAAATATACTGTAAAAATGCTTTTTACTTTTCAGTACAACCTATATACTGTACTTGTCAGTATACACAAATGTTACCTTCTCAAAAAAATTGATAAAATAAGTATCAAAGCTTATTAATGTTCTCAATAGTCACACTCTTGCTTCCTGTTTGTTATGCAGTTCCACCTCAATCCTGTTCATGCAATTGTACAGCTCCGACCATCACTGCAGCATCGTAAGGAAAGTGAGTTGAAGAACCTT-ACCACCAGCAATGATGAAAAAAGTTGTGAAAACG</genome_strand>
        <mrna_strand>ATTTCGACTAAAAAGGAAGAATTGCTATCTCAACCCCCACTAAGAGATCATATAGGGAAAAACGGAGAGGCAACGGTTGAGGACAACGTTCCATTGAATGGAGATACTACGGGAAACGACCTTGCAGAAGAACAAGTCACAATGGAAACTGATAGCGATCGAGATGAAGTTGTCCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAG.........................................................................................TTCTATGTACTCCAATATCCGTTGAGATCCGAATGGCGTCCCTATGGATTGGATGAAAAATGCCAAGAC...........................................................................................................................................GTGAGGTTGAGACCTTCAACGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTATGAATTTCGACAGAGACTCTGTACATGCAGCAACGATAAAAAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTCTACAAAATGGGTGCCATTATCTACTTGTGCTGACTTTGCTGTTGGGATCCTCATTGGTGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCTCAATCCTGTTCATGCAGTTGTACAGCTCCGACCATCACTGCAGCATCGTAAGGAAAGTGAGTTGAAGAACCTTNACCACCAGC-ATGATGAAAAAAGTTGTGAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268671" ref_strand="+" ref_description="SGN-E268671 [cLEM-9-A23]">
      <seq>gaatgccatttgtcctgctagaccaactgacattgacagattaagaaatcttagaacaaggttgtctcagaaaccttttgaagaacgtgttataacttggcttcttgagggacctccaattcatcgttttgatactctaaagcacctatctccagataatcctgttgatgagattttggaagttctcaaaagttgcgcacaattagttcaaggattgtgggttgcataaagttcattagtctatgacacaaacaatggagtctaaattttagcgaggaattttgttctttatgagtttaccaagagtacttttattatataagtcactgtttggctagaggcctgaattccttaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="52192" stop="55640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52492" g_stop="52551" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52552" i_stop="54910" i_length="2359">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54911" g_stop="54959" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="109" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54960" i_stop="55091" i_length="132">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55092" g_stop="55340" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="359" r_length="250" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E268671" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52492" e_stop="52551"/>
          <exon e_start="54911" e_stop="54959"/>
          <exon e_start="55092" e_stop="55340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAGGTACTGCAGACACTTTAGTTGGTCCTTCACATCTATTGTTTTGACATTGAAAGGTCTGGAGGTGCTGCTAAAGACAAAAAGAAAATTTTATTTACATCTATGATCGTAGAGCTGTCTTCTTCTTTGATATGTGGCGTAATCATCCTCTAGTATTGTTGGACCATTCAACTAACTGCAAATTATCATCTTCTTTTTCAAAGAAATCACATATTACTGTAATCTGTTTCCTTATCTCCCCCTTCCACTTTATTTATTTAATTAGTTAATCTCTTTTTGCTTTCTGTACAATGTTAAGATGAGATTTTGATGATCTTTGATTACTTGTTGATAATCTAGTTTTTAGTTAGCAATTGACTCGTCTTTGGTTGATGGACTGGTAATTTCCTACAGTGTCAGAGATTAGATTCACATAGTAGCTTAAGCCTAGGCACAACGTCAATGGATGTAATTCTGATTGACTAAATTTGTAGATCAAATTGGGAAGGAGAACGTTTTTCTGAGATGGGGAAAAATCTCTCTAGTGGCGGATCCAGATTTTTTCACTACAAGGGTTCAAAAAATGAAAATGTAGTACTTGAGATTTGAACTTGGAACCTCATGGTGAATTTTGAACCCCCTCAGCCAACGTCATCTTATATTTAGGAGGTTCAAAATCTCTATATGTACACAAAAATTTAAAAATATCCAAATGGTGTCATTTTTAGTCGAGGGTTTGGGTGAACCCTCTAGATCCACCTTGACATGAATGCTTCTGCTGGCTTGGACTCAGGGGAGAAAGGAGAATTTCACTAACAGATCAAGTTCAACAAAATATTGTGGAGGGGATTTCTAAAAATGCAGCATTGGGAGGTTTAGCTAATCTTTGACGATGTGTGATGTTGGATCAAATAATATTTTGGGGGGAAAATTAGTAGAGAATGTGAACACAAGAAAATACTGGAAGCTATTAGGTGCTCAAACTCTAAGGTCCAGTCTGTCCCCCCACCCCTCACCCCACCCCCACCCATTTTGATGGTTGAACTTGGTCTATATTTCGGTCAAGTACATATTGGTGTTCCCTCTAAGGTGTGCTTTAGAAACAATCTAGATTCTGAATTCTCTCAGTATTGCATATGTCAGTCAAAAGTTGGAAAAAAGTCTCCAGTCTGCTGGGGCTATGAAGATTTTGATACTAACACCATGAAGTGGTAGGCTAAGCAGGAAAAGGAGAGAACTCAGACTTGAATTGCGAGGCAAAATTAAAGCGTGCATTTTACTGAAGAAAACTGAATCAAGACCATAAAAATTTAAAAAAGTTATACTTGTAAAGATAAATTAACTATAAACACAAACAACTATATGGACAAATCAAAGCAGACAGGTGTCCTGACTTTGAGCTTCACAACCACCATTACGAAAAAAATTCCTCGTGCTTGACCCATGGAAAAGAATAAGACTTGCATGTTTGGGGTGTGTTGTAAGCACGACTAAATAAATAAGAGTATGCTCTGTTAATCCGCCTCAACTTTTAGATGAGGTGTTCACTCACTCCAACATCTATTTTTATAGTATATGCAGGAAGCATTGTTGTCCCCGGTTTATAAAAAAATGTGTTACGGAATTAATTTTGGCATTGTGGTGGTAGGTGGGGGTGGGGGAGGGGGAGAGGGAGAGTAGGTTAAAGGCTTAAAGCTTTGTTGCTTTCTTGGTTTGTCATTGTAATAAATATGAGCTGTATGAAATGCAAGTTTACATTATGCTTTGTTTGCTAGAGAACCTAATCTTCCAGAAAGTAGTTTTTGTTCTCGATGTTCTAGCAATGAAATAAATAAGAAAACATGGTCTTGCTTCTTTCTAGTTTTGGAGTGATTGGCAGATCTACAAAAATCTTCGGGGCATTTTTATGTGATAAATCTTATTTCCATTTCTTTTGTTCATCACTTCTTGAGGCCGAGGACGGGAGTGGACTGTTGTTCCAGAATATGCTGTTGGATACATTTTCACCATGTTACTTGGCCAAACTTGCACCTCACTGGTCATCTTATCCTTGGTGTTCTACCTTTGTCATCTATCAAATTGATTTCTTTTCATTTAAAAAGAACTTTGTTCTAAATAGCCATCAGTTGTTAAAGTTGATTCCTTGGAATTAATTATTATTGACTGGTGTGACTTGTATTCATTCTAGGTGTGCTGGTGTAGTAAAATATAAATATGCAGTTTCTCTAGCCAGAAGTTTGCTGTTTCTTCCATTCAGTATCCAAGCCATGTAGAATAGATATCAGTACTGGATATGCCATATTTCTCAATTATGTTAAATTAGCATTCTTTCCCAGTCATTTTATGCTCCTAACTTGTAAATTGCCAAATGGATGGTTTTCAGGTTGTCTCAGAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTCTTGAGGTTTGTACCTACTATTTGGATTTTGCACTGCTTATATTTTTATGCCTGCAAGGCTGCAACAAAGTTTGTTTAGATGGCCCCATGGTGCTTATAACTCAGCACATTTCTAAATATGAATTCTTTTCGCAACAGGGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTTTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCAAAAAGTTCATTAGTCTATGACACAAACAATGGAGTCGAAGTTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTAATTA-AGAAGTCAGTGTTTGGCAGGAGGCCTGAATTCCTTAAAGCT</genome_strand>
        <mrna_strand>GAATGCCATTTGTCCTGCTAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTCAGAAACCTTTTGAAGAACGTGTTATAACTTGGCTTCTTGAG....................................................................................................................................GGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTATCTCCAGATAATCCTGTTGATGAGATTTTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCATAAAGTTCATTAGTCTATGACACAAACAATGGAGTCTAAATTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTTATTATATAAGTCACTGTTTGGCTAGAGGCCTGAATTCCTTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269479" ref_strand="+" ref_description="SGN-E269479 [cLEM-2-H19]">
      <seq>atgccatttgtcctgcaagaccaactgacattgacagattaagaaatcttagaacaaggttgtctcataaaccttttgaagaacgtgttagaacttggctttttgagggacctccaattcatcgttttgatactctaaagcacctagctccagataatcctgttgatgagattttggaagttctcaaaagttgcgcacaattagatcaaggattgtgggatgcaaaaagttcattactctatgacacaaacaatgtattcgaagttttagcgaggaattctgatctttatgagtttaccaagagtactttaattaaaaagtcactgtttggcatgatgcctgaattccttaaagctgcgacaccagttctaaaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="52194" stop="55663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52494" g_stop="52551" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52552" i_stop="54910" i_length="2359">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54911" g_stop="54959" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="107" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54960" i_stop="55091" i_length="132">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55092" g_stop="55363" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="379" r_length="272" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E269479" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52494" e_stop="52551"/>
          <exon e_start="54911" e_stop="54959"/>
          <exon e_start="55092" e_stop="55363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAGGTACTGCAGACACTTTAGTTGGTCCTTCACATCTATTGTTTTGACATTGAAAGGTCTGGAGGTGCTGCTAAAGACAAAAAGAAAATTTTATTTACATCTATGATCGTAGAGCTGTCTTCTTCTTTGATATGTGGCGTAATCATCCTCTAGTATTGTTGGACCATTCAACTAACTGCAAATTATCATCTTCTTTTTCAAAGAAATCACATATTACTGTAATCTGTTTCCTTATCTCCCCCTTCCACTTTATTTATTTAATTAGTTAATCTCTTTTTGCTTTCTGTACAATGTTAAGATGAGATTTTGATGATCTTTGATTACTTGTTGATAATCTAGTTTTTAGTTAGCAATTGACTCGTCTTTGGTTGATGGACTGGTAATTTCCTACAGTGTCAGAGATTAGATTCACATAGTAGCTTAAGCCTAGGCACAACGTCAATGGATGTAATTCTGATTGACTAAATTTGTAGATCAAATTGGGAAGGAGAACGTTTTTCTGAGATGGGGAAAAATCTCTCTAGTGGCGGATCCAGATTTTTTCACTACAAGGGTTCAAAAAATGAAAATGTAGTACTTGAGATTTGAACTTGGAACCTCATGGTGAATTTTGAACCCCCTCAGCCAACGTCATCTTATATTTAGGAGGTTCAAAATCTCTATATGTACACAAAAATTTAAAAATATCCAAATGGTGTCATTTTTAGTCGAGGGTTTGGGTGAACCCTCTAGATCCACCTTGACATGAATGCTTCTGCTGGCTTGGACTCAGGGGAGAAAGGAGAATTTCACTAACAGATCAAGTTCAACAAAATATTGTGGAGGGGATTTCTAAAAATGCAGCATTGGGAGGTTTAGCTAATCTTTGACGATGTGTGATGTTGGATCAAATAATATTTTGGGGGGAAAATTAGTAGAGAATGTGAACACAAGAAAATACTGGAAGCTATTAGGTGCTCAAACTCTAAGGTCCAGTCTGTCCCCCCACCCCTCACCCCACCCCCACCCATTTTGATGGTTGAACTTGGTCTATATTTCGGTCAAGTACATATTGGTGTTCCCTCTAAGGTGTGCTTTAGAAACAATCTAGATTCTGAATTCTCTCAGTATTGCATATGTCAGTCAAAAGTTGGAAAAAAGTCTCCAGTCTGCTGGGGCTATGAAGATTTTGATACTAACACCATGAAGTGGTAGGCTAAGCAGGAAAAGGAGAGAACTCAGACTTGAATTGCGAGGCAAAATTAAAGCGTGCATTTTACTGAAGAAAACTGAATCAAGACCATAAAAATTTAAAAAAGTTATACTTGTAAAGATAAATTAACTATAAACACAAACAACTATATGGACAAATCAAAGCAGACAGGTGTCCTGACTTTGAGCTTCACAACCACCATTACGAAAAAAATTCCTCGTGCTTGACCCATGGAAAAGAATAAGACTTGCATGTTTGGGGTGTGTTGTAAGCACGACTAAATAAATAAGAGTATGCTCTGTTAATCCGCCTCAACTTTTAGATGAGGTGTTCACTCACTCCAACATCTATTTTTATAGTATATGCAGGAAGCATTGTTGTCCCCGGTTTATAAAAAAATGTGTTACGGAATTAATTTTGGCATTGTGGTGGTAGGTGGGGGTGGGGGAGGGGGAGAGGGAGAGTAGGTTAAAGGCTTAAAGCTTTGTTGCTTTCTTGGTTTGTCATTGTAATAAATATGAGCTGTATGAAATGCAAGTTTACATTATGCTTTGTTTGCTAGAGAACCTAATCTTCCAGAAAGTAGTTTTTGTTCTCGATGTTCTAGCAATGAAATAAATAAGAAAACATGGTCTTGCTTCTTTCTAGTTTTGGAGTGATTGGCAGATCTACAAAAATCTTCGGGGCATTTTTATGTGATAAATCTTATTTCCATTTCTTTTGTTCATCACTTCTTGAGGCCGAGGACGGGAGTGGACTGTTGTTCCAGAATATGCTGTTGGATACATTTTCACCATGTTACTTGGCCAAACTTGCACCTCACTGGTCATCTTATCCTTGGTGTTCTACCTTTGTCATCTATCAAATTGATTTCTTTTCATTTAAAAAGAACTTTGTTCTAAATAGCCATCAGTTGTTAAAGTTGATTCCTTGGAATTAATTATTATTGACTGGTGTGACTTGTATTCATTCTAGGTGTGCTGGTGTAGTAAAATATAAATATGCAGTTTCTCTAGCCAGAAGTTTGCTGTTTCTTCCATTCAGTATCCAAGCCATGTAGAATAGATATCAGTACTGGATATGCCATATTTCTCAATTATGTTAAATTAGCATTCTTTCCCAGTCATTTTATGCTCCTAACTTGTAAATTGCCAAATGGATGGTTTTCAGGTTGTCTCAGAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTCTTGAGGTTTGTACCTACTATTTGGATTTTGCACTGCTTATATTTTTATGCCTGCAAGGCTGCAACAAAGTTTGTTTAGATGGCCCCATGGTGCTTATAACTCAGCACATTTCTAAATATGAATTCTTTTCGCAACAGGGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTTTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCAAAAAGTTCATTAGTCTATGACACAAACAATGGAGTCGAAGTTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTAATTAAGAAGTCAGTGTTTGGCAGGAGGCCTGAATTCCTTAAAGCTGCGACACCAGTTCTAAAATCATT</genome_strand>
        <mrna_strand>ATGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTCATAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTTTTGAG....................................................................................................................................GGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTTTGGAAGTTCTCAAAAGTTGCGCACAATTAGATCAAGGATTGTGGGATGCAAAAAGTTCATTACTCTATGACACAAACAATGTATTCGAAGTTTTAGCGAGGAATTCTGATCTTTATGAGTTTACCAAGAGTACTTTAATTAAAAAGTCACTGTTTGGCATGATGCCTGAATTCCTTAAAGCTGCGACACCAGTTCTAAAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282511" ref_strand="+" ref_description="SGN-E282511 [cLER-18-M4]">
      <seq>aaaactcatttctagccctagttttgtactgaagagaaaaattagggtaaaaacgtagtggaacgatgcaggaatatgaaggtaatggagaagatatagagaataatggttcttctccttacagtgactccaagtctcagcatacttctcgtgaccccgagaaagaaaggggctcatcaagaagcagggagaaggagagggagaaagggcgtgataaagaccgggacagggacaggaatagagatagagatagagacagggacagaggtaaggaaagggacaaagatagggatagggacagagagagggagaaggaccgtgatcgtcatcacagagatcgtcatagggatcggagtgataggagggagaggatcagagatcgagatgaagatgatcttcagcgaactcgagattacgataggcgaagagacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="61615" stop="63616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61915" g_stop="62054" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62055" i_stop="62730" i_length="676">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62731" g_stop="63011" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="421" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63302" g_stop="63316" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="436" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E282511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61915" e_stop="62054"/>
          <exon e_start="62731" e_stop="63011"/>
          <exon e_start="63302" e_stop="63316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAGGTATTTTTTTTTTCGATAAAAAAATGGATTTGAACTTATAAAGGTGATGAAGTAATACACGTAGATATTTGCTTTAATTAGGGTTACGTATATGCTTTTGATTGTTTTATGTTCGATGACTGGGAAAGTTTTATATGAATTGCTTGATGGGATGCGATAGCTGGGTATATCTCTGTCTCTGTGTGTAGTTATGGTTTATGGAGTGTTGTGTTGATGAATTTCTTTTCTTAAGGGCGTTTATTCGACTACTTGTTCCGCTAGAAAGAGTGATGGGATTTGGAATAGAAGCATCAAAACATGTATAATCGGACAATTATTTTTTGAATTCAAATTACACTGTTGGAGTTATGGAATAGAGCCGATTACATAAAAGATGTAGGCTGTTTTTGTTGGTGGTCGGGTTGAGGAGTATTGCCTATGGTTGGCCTCTGGTAGGATCCAGAGAGGAGCTGGTTTGCTCCTGTTGGACAGCAGTTCTGATCTTTAACCTGTAAACGTAGCCAAAACAAAAATTTTATGATATAAAATTATTTTCCCTGATTTGTGTTGCTCTTTGTTTTAATTTCCTTAGCTTTAGATTAGTATGGCTTCTGCTGTATGGTATTCCGTTTTTGTTTATATTTTTAAGTTTTGTTGTTCTCTTCATAGACTAAACATTTTTATTATCATTTTCCAGCATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAGGTGAGTTCAAATGCAGTTCTAAAAGTTAGTTGGATTCATGTTCTGTACCTCTTTTCAGGTACTCATGTATGATGATAATACATAATTGTGGTATTCATTTTAAGAATCATGTTTGATTTAATTTTGAAGTGCTGTTTTTTCTTTGTCACTGTTCTCTATGCTCGACATGCTTTAGTGTGAGCTTCATATGAGATTCACCATTCATGTGTTTGGTGCTTGCTGATTTAGTGTCTCAACCAATTTCTTATCTTTCTTATGTTCTTGTATATGATTGTTTATTTATCCCTCAGGCGAAGAGACAATGA</genome_strand>
        <mrna_strand>AAAACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG..................................................................................................................................................................................................................................................................................................GCGAAGAGACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309534" ref_strand="+" ref_description="SGN-E309534 [cTOA-3-E9]">
      <seq>tcatttctagccctagttttgtactgaagagaaaaattagggtaaaaacgtagtggaacgatgcaggaatatgaaggtaatggagaagatatagagaataatggttcttctccttacagtgactccaagtctcagcatacttctcgtgaccccgagaaagaaaggggctcatcaagaagcagggagaaggagagggagaaagggcgtgataaagaccgggacagggacaggaatagagatagagatagagacagggacagaggtaaggaaagggacaaagatagggatagggacagagagagggagaaggaccgtgatcgtcatcacagagatcgtcatanggatcggagtgataggagggagaggatcagagatcgagatgaagatgatcttcagcgaactcgagattacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="61620" stop="63309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61920" g_stop="62054" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62055" i_stop="62730" i_length="676">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62731" g_stop="63009" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="414" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E309534" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61920" e_stop="62054"/>
          <exon e_start="62731" e_stop="63009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAGGTATTTTTTTTTTCGATAAAAAAATGGATTTGAACTTATAAAGGTGATGAAGTAATACACGTAGATATTTGCTTTAATTAGGGTTACGTATATGCTTTTGATTGTTTTATGTTCGATGACTGGGAAAGTTTTATATGAATTGCTTGATGGGATGCGATAGCTGGGTATATCTCTGTCTCTGTGTGTAGTTATGGTTTATGGAGTGTTGTGTTGATGAATTTCTTTTCTTAAGGGCGTTTATTCGACTACTTGTTCCGCTAGAAAGAGTGATGGGATTTGGAATAGAAGCATCAAAACATGTATAATCGGACAATTATTTTTTGAATTCAAATTACACTGTTGGAGTTATGGAATAGAGCCGATTACATAAAAGATGTAGGCTGTTTTTGTTGGTGGTCGGGTTGAGGAGTATTGCCTATGGTTGGCCTCTGGTAGGATCCAGAGAGGAGCTGGTTTGCTCCTGTTGGACAGCAGTTCTGATCTTTAACCTGTAAACGTAGCCAAAACAAAAATTTTATGATATAAAATTATTTTCCCTGATTTGTGTTGCTCTTTGTTTTAATTTCCTTAGCTTTAGATTAGTATGGCTTCTGCTGTATGGTATTCCGTTTTTGTTTATATTTTTAAGTTTTGTTGTTCTCTTCATAGACTAAACATTTTTATTATCATTTTCCAGCATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGAT</genome_strand>
        <mrna_strand>TCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATANGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449338" ref_strand="+" ref_description="SGN-E449338 [cSTS-6-M3]">
      <seq>cttttctagccctagttttgtactcctctctctcaaggagaagaagagataaattagagtaacgtagtggaacgatgcaggaatatgaaggtaacggagaagatatagagaataatggttcttctccttacagtgactccaagtctcagcgtacttctcgtgaccccgaaaaagaaaggggctcatcaagaagcagggaaaaggagagggagaaagggcgtgataaagacagggacagggataggaatgtagatagagacagggacagagttaaggaaagggacaaagatatggatagggacagagagagggagaagggccgtgatcgtcatcatagagatcgtcatagggatcggagtgataggagggagaggaccagagatcgagatgaagatgatcttcagcgaactcgagattacgataggagaagagacaatgacaaagatagagaggaccgacagagacacaagcctagctctaggggtagatccgagcatagatcaaggtctagatcacggtcgccatctaagagcaaaaggatcagtggttttgatatggcacctcctaccagtgcattgttatctggcgctactgatgttgcaggtcaagttccggggacgactaacccatcaattcctggaatgttttctaacatgtttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="61621" stop="65103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61973" g_stop="62054" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="149" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62055" i_stop="62730" i_length="676">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62731" g_stop="63011" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="424" r_length="275" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63302" g_stop="63409" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="532" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63410" i_stop="64064" i_length="655">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64065" g_stop="64135" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="603" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64745" g_stop="64803" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="662" r_length="59" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E449338" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61973" e_stop="62054"/>
          <exon e_start="62731" e_stop="63011"/>
          <exon e_start="63302" e_stop="63409"/>
          <exon e_start="64065" e_stop="64135"/>
          <exon e_start="64745" e_stop="64803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAGGTATTTTTTTTTTCGATAAAAAAATGGATTTGAACTTATAAAGGTGATGAAGTAATACACGTAGATATTTGCTTTAATTAGGGTTACGTATATGCTTTTGATTGTTTTATGTTCGATGACTGGGAAAGTTTTATATGAATTGCTTGATGGGATGCGATAGCTGGGTATATCTCTGTCTCTGTGTGTAGTTATGGTTTATGGAGTGTTGTGTTGATGAATTTCTTTTCTTAAGGGCGTTTATTCGACTACTTGTTCCGCTAGAAAGAGTGATGGGATTTGGAATAGAAGCATCAAAACATGTATAATCGGACAATTATTTTTTGAATTCAAATTACACTGTTGGAGTTATGGAATAGAGCCGATTACATAAAAGATGTAGGCTGTTTTTGTTGGTGGTCGGGTTGAGGAGTATTGCCTATGGTTGGCCTCTGGTAGGATCCAGAGAGGAGCTGGTTTGCTCCTGTTGGACAGCAGTTCTGATCTTTAACCTGTAAACGTAGCCAAAACAAAAATTTTATGATATAAAATTATTTTCCCTGATTTGTGTTGCTCTTTGTTTTAATTTCCTTAGCTTTAGATTAGTATGGCTTCTGCTGTATGGTATTCCGTTTTTGTTTATATTTTTAAGTTTTGTTGTTCTCTTCATAGACTAAACATTTTTATTATCATTTTCCAGCATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAGGTGAGTTCAAATGCAGTTCTAAAAGTTAGTTGGATTCATGTTCTGTACCTCTTTTCAGGTACTCATGTATGATGATAATACATAATTGTGGTATTCATTTTAAGAATCATGTTTGATTTAATTTTGAAGTGCTGTTTTTTCTTTGTCACTGTTCTCTATGCTCGACATGCTTTAGTGTGAGCTTCATATGAGATTCACCATTCATGTGTTTGGTGCTTGCTGATTTAGTGTCTCAACCAATTTCTTATCTTTCTTATGTTCTTGTATATGATTGTTTATTTATCCCTCAGGCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAGGTTTGTCTTACTCCTATATCTTCTTGTAGGAGCATTATCAAGATACGTTTTATTGGTTATTTTTGATGTCCTAATGCTCCGTTAGACTGGTTTCTTTCTTTTGAACTTTGAGTGAAGCAAATTGTAATTTGCTGTGATGTTGGCAAGACTGGTCATTGGACTATTTGATCTGTCAATTTGGAAAGAAATCACAAGTGTTGATGTTTTAGAAATTAGAACTATAGATAGAATTGGGCTAAAACATTAGGTGAAGACTTTGTTATTTGGCCATATGAGCTGATGTTGCCATGTTGGCTTACAAAAGTATTTGTTCTTGCAAAATCTTAAAGCTACTATGATGACTTTCACTCTCTAATTACTGGAACCTATTGGATTTTAACTGTTTGTTCTTTTCCTTTATTTTTTTTTCCTTTTGAATTCTCTGGGGTAAAGTCTGTTTATATTCTACTTTACATTCTATTGGCCTCCCTAGACCTCACTTGTGGGATTGCACTGGGTATGTTGTTATTGTGATTTTTCTGTCAGTGGCTAACTTCTATACAGATCGTAGAAAGTTAAATTTTCAACCATTTTATTATTTCATTCTCAAAAAGAATAATTCATTCTCAAAAAAATTTATCACTTCGCTGTTGGTACTAATGATGGTTCTTTTCAGCAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCT</genome_strand>
        <mrna_strand>TGGAACGATGCAGGAATATGAAGGTAACGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACTTCTCGTGACCCCGAAAAAGAAAGGGGCTCATCAAGAAGCAGGGAAAAGGAGAGGGAGAAAGGGCGTGATAAAGACAGGGACAGGGATAGGAAT---G-T--AGATAGAGACAGGGACAGAGTTAAGGAAAGGGACAAAGATATGGATAGGGACAGAGAGAGGGAGAAGGGCCGTGATCGTCATCATAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGACCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG..................................................................................................................................................................................................................................................................................................GAGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCGCCATCTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGATCAGTGGTTTTGATATGGCACCTCCTACCAGTGCATTGTTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCGGGGACGACTAACCCATCAATTCCTGGAATGTTTTCTAACATGTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257326" ref_strand="+" ref_description="SGN-E257326 [cLEG-46-L12]">
      <seq>gatgcaggaatatgaaggtaatggagaagatatagagaataatggttcttctccttacagtgactccaagtctcagcatacttctcgtgaccccgagaaagaaaggggctcatcaagaagcagggagaaggagagggagaaagggcgtgataaagaccgggacagggacaggaatagagatagagatagagacagggacagaggtaaggaaagggacaaagatagggatagggacagagagagggagaaggaccgtgatcgtcatcacagagatcgtcatagggatcggagtgataggagggagaggatcagagatcgagatgaagatgatcttcagcgaactcgagattacgataggcgaagagacaatgacaaagatagagaggaccgacagagacacaagcctagctctaggggtagatccgagcatagatcaaggtctagatcacggtcaccatctaagagcaaaaggatcagtggttttgatatggcacctcccaccagtgcattgctatctggcgctactgatgttgcaggcaatgttgggctacttgccccactgtgctgacaatgggcgtgagccgacttctgtagcttatatgtacnaggaagaatcgatacaggtcaagttcctgggaccactaacccatcaatacctggaatgttttctaacatgtttcctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="61679" stop="65106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61979" g_stop="62054" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62055" i_stop="62730" i_length="676">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62731" g_stop="63011" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="357" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63302" g_stop="63409" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="465" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63410" i_stop="64064" i_length="655">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64065" g_stop="64135" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="536" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64136" i_stop="64416" i_length="281">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64417" g_stop="64503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="623" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64504" i_stop="64744" i_length="241">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64745" g_stop="64806" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="685" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E257326" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61979" e_stop="62054"/>
          <exon e_start="62731" e_stop="63011"/>
          <exon e_start="63302" e_stop="63409"/>
          <exon e_start="64065" e_stop="64135"/>
          <exon e_start="64417" e_stop="64503"/>
          <exon e_start="64745" e_stop="64806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAGGTATTTTTTTTTTCGATAAAAAAATGGATTTGAACTTATAAAGGTGATGAAGTAATACACGTAGATATTTGCTTTAATTAGGGTTACGTATATGCTTTTGATTGTTTTATGTTCGATGACTGGGAAAGTTTTATATGAATTGCTTGATGGGATGCGATAGCTGGGTATATCTCTGTCTCTGTGTGTAGTTATGGTTTATGGAGTGTTGTGTTGATGAATTTCTTTTCTTAAGGGCGTTTATTCGACTACTTGTTCCGCTAGAAAGAGTGATGGGATTTGGAATAGAAGCATCAAAACATGTATAATCGGACAATTATTTTTTGAATTCAAATTACACTGTTGGAGTTATGGAATAGAGCCGATTACATAAAAGATGTAGGCTGTTTTTGTTGGTGGTCGGGTTGAGGAGTATTGCCTATGGTTGGCCTCTGGTAGGATCCAGAGAGGAGCTGGTTTGCTCCTGTTGGACAGCAGTTCTGATCTTTAACCTGTAAACGTAGCCAAAACAAAAATTTTATGATATAAAATTATTTTCCCTGATTTGTGTTGCTCTTTGTTTTAATTTCCTTAGCTTTAGATTAGTATGGCTTCTGCTGTATGGTATTCCGTTTTTGTTTATATTTTTAAGTTTTGTTGTTCTCTTCATAGACTAAACATTTTTATTATCATTTTCCAGCATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAGGTGAGTTCAAATGCAGTTCTAAAAGTTAGTTGGATTCATGTTCTGTACCTCTTTTCAGGTACTCATGTATGATGATAATACATAATTGTGGTATTCATTTTAAGAATCATGTTTGATTTAATTTTGAAGTGCTGTTTTTTCTTTGTCACTGTTCTCTATGCTCGACATGCTTTAGTGTGAGCTTCATATGAGATTCACCATTCATGTGTTTGGTGCTTGCTGATTTAGTGTCTCAACCAATTTCTTATCTTTCTTATGTTCTTGTATATGATTGTTTATTTATCCCTCAGGCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAGGTTTGTCTTACTCCTATATCTTCTTGTAGGAGCATTATCAAGATACGTTTTATTGGTTATTTTTGATGTCCTAATGCTCCGTTAGACTGGTTTCTTTCTTTTGAACTTTGAGTGAAGCAAATTGTAATTTGCTGTGATGTTGGCAAGACTGGTCATTGGACTATTTGATCTGTCAATTTGGAAAGAAATCACAAGTGTTGATGTTTTAGAAATTAGAACTATAGATAGAATTGGGCTAAAACATTAGGTGAAGACTTTGTTATTTGGCCATATGAGCTGATGTTGCCATGTTGGCTTACAAAAGTATTTGTTCTTGCAAAATCTTAAAGCTACTATGATGACTTTCACTCTCTAATTACTGGAACCTATTGGATTTTAACTGTTTGTTCTTTTCCTTTATTTTTTTTTCCTTTTGAATTCTCTGGGGTAAAGTCTGTTTATATTCTACTTTACATTCTATTGGCCTCCCTAGACCTCACTTGTGGGATTGCACTGGGTATGTTGTTATTGTGATTTTTCTGTCAGTGGCTAACTTCTATACAGATCGTAGAAAGTTAAATTTTCAACCATTTTATTATTTCATTCTCAAAAAGAATAATTCATTCTCAAAAAAATTTATCACTTCGCTGTTGGTACTAATGATGGTTCTTTTCAGCAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTA</genome_strand>
        <mrna_strand>GATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG..................................................................................................................................................................................................................................................................................................GCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.........................................................................................................................................................................................................................................................................................GCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACNAGGAAGAATCGATACAG.................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200782" ref_strand="+" ref_description="SGN-E200782 [cLEC-9-M14]">
      <seq>gagaaggaccgtgatcgtcatcacagagatcgtcatagggatcggagtgataggagggagaggatcagagatcgagatgaagatgatcttcagcgaactcgagattacgataggcgaagagacaatgacaaagatagagaggaccgacagagacacaagcctagctctaggggtagatccgagcatagatcaaggtctagatcacggtcaccatctaagagcaaaaggatcagtggttttgatatggcacctcccaccagtgcattgctatctggcgctactgatgttgcaggtcaagttcctgggaccactaacccatcaatacctggaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="62599" stop="65088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62899" g_stop="63011" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63302" g_stop="63409" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="221" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63410" i_stop="64064" i_length="655">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64065" g_stop="64135" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="292" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64745" g_stop="64788" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="336" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E200782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62899" e_stop="63011"/>
          <exon e_start="63302" e_stop="63409"/>
          <exon e_start="64065" e_stop="64135"/>
          <exon e_start="64745" e_stop="64788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAGGTGAGTTCAAATGCAGTTCTAAAAGTTAGTTGGATTCATGTTCTGTACCTCTTTTCAGGTACTCATGTATGATGATAATACATAATTGTGGTATTCATTTTAAGAATCATGTTTGATTTAATTTTGAAGTGCTGTTTTTTCTTTGTCACTGTTCTCTATGCTCGACATGCTTTAGTGTGAGCTTCATATGAGATTCACCATTCATGTGTTTGGTGCTTGCTGATTTAGTGTCTCAACCAATTTCTTATCTTTCTTATGTTCTTGTATATGATTGTTTATTTATCCCTCAGGCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAGGTTTGTCTTACTCCTATATCTTCTTGTAGGAGCATTATCAAGATACGTTTTATTGGTTATTTTTGATGTCCTAATGCTCCGTTAGACTGGTTTCTTTCTTTTGAACTTTGAGTGAAGCAAATTGTAATTTGCTGTGATGTTGGCAAGACTGGTCATTGGACTATTTGATCTGTCAATTTGGAAAGAAATCACAAGTGTTGATGTTTTAGAAATTAGAACTATAGATAGAATTGGGCTAAAACATTAGGTGAAGACTTTGTTATTTGGCCATATGAGCTGATGTTGCCATGTTGGCTTACAAAAGTATTTGTTCTTGCAAAATCTTAAAGCTACTATGATGACTTTCACTCTCTAATTACTGGAACCTATTGGATTTTAACTGTTTGTTCTTTTCCTTTATTTTTTTTTCCTTTTGAATTCTCTGGGGTAAAGTCTGTTTATATTCTACTTTACATTCTATTGGCCTCCCTAGACCTCACTTGTGGGATTGCACTGGGTATGTTGTTATTGTGATTTTTCTGTCAGTGGCTAACTTCTATACAGATCGTAGAAAGTTAAATTTTCAACCATTTTATTATTTCATTCTCAAAAAGAATAATTCATTCTCAAAAAAATTTATCACTTCGCTGTTGGTACTAATGATGGTTCTTTTCAGCAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTT</genome_strand>
        <mrna_strand>GAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG..................................................................................................................................................................................................................................................................................................GCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436937" ref_strand="+" ref_description="SGN-E436937 [cSTA-1-L11]">
      <seq>gaaggaccgtgatcgtcatcacagagatcgtcatagggatcggagtgataggagggagaggaccagagatcgagatgaagatgatcttcagcgaactcgagattacgataggcgaagagacaacgacaaagatagagaggaccgacagagacacaagcctagctctaggggtagatccgagcatagatcaaggtctagatcacggtcgccatctaagagcaaaaggatcagtggttttgatatggcacctcctaccagtgcgttgttatctggcgctactgatgttgcaggccaagttccggggacgactaacccatcaattcctggaatgttttctaacatgtttcctctagcagcaggccagtttggagctctccctattatgccagtccaagcaatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="62601" stop="65235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62901" g_stop="63011" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63302" g_stop="63409" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="219" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63410" i_stop="64064" i_length="655">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.813" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64065" g_stop="64135" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="290" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64745" g_stop="64818" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="364" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64819" i_stop="64895" i_length="77">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64896" g_stop="64935" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="404" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E436937" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62901" e_stop="63011"/>
          <exon e_start="63302" e_stop="63409"/>
          <exon e_start="64065" e_stop="64135"/>
          <exon e_start="64745" e_stop="64818"/>
          <exon e_start="64896" e_stop="64935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAGGTGAGTTCAAATGCAGTTCTAAAAGTTAGTTGGATTCATGTTCTGTACCTCTTTTCAGGTACTCATGTATGATGATAATACATAATTGTGGTATTCATTTTAAGAATCATGTTTGATTTAATTTTGAAGTGCTGTTTTTTCTTTGTCACTGTTCTCTATGCTCGACATGCTTTAGTGTGAGCTTCATATGAGATTCACCATTCATGTGTTTGGTGCTTGCTGATTTAGTGTCTCAACCAATTTCTTATCTTTCTTATGTTCTTGTATATGATTGTTTATTTATCCCTCAGGCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAGGTTTGTCTTACTCCTATATCTTCTTGTAGGAGCATTATCAAGATACGTTTTATTGGTTATTTTTGATGTCCTAATGCTCCGTTAGACTGGTTTCTTTCTTTTGAACTTTGAGTGAAGCAAATTGTAATTTGCTGTGATGTTGGCAAGACTGGTCATTGGACTATTTGATCTGTCAATTTGGAAAGAAATCACAAGTGTTGATGTTTTAGAAATTAGAACTATAGATAGAATTGGGCTAAAACATTAGGTGAAGACTTTGTTATTTGGCCATATGAGCTGATGTTGCCATGTTGGCTTACAAAAGTATTTGTTCTTGCAAAATCTTAAAGCTACTATGATGACTTTCACTCTCTAATTACTGGAACCTATTGGATTTTAACTGTTTGTTCTTTTCCTTTATTTTTTTTTCCTTTTGAATTCTCTGGGGTAAAGTCTGTTTATATTCTACTTTACATTCTATTGGCCTCCCTAGACCTCACTTGTGGGATTGCACTGGGTATGTTGTTATTGTGATTTTTCTGTCAGTGGCTAACTTCTATACAGATCGTAGAAAGTTAAATTTTCAACCATTTTATTATTTCATTCTCAAAAAGAATAATTCATTCTCAAAAAAATTTATCACTTCGCTGTTGGTACTAATGATGGTTCTTTTCAGCAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACAC</genome_strand>
        <mrna_strand>GAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGACCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG..................................................................................................................................................................................................................................................................................................GCGAAGAGACAACGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCGCCATCTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGATCAGTGGTTTTGATATGGCACCTCCTACCAGTGCGTTGTTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTTCCGGGGACGACTAACCCATCAATTCCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAG.............................................................................TTTGGAGCTCTCCCTATTATGCCAGTCCAAGCAATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269529" ref_strand="+" ref_description="SGN-E269529 [cLEM-2-E17]">
      <seq>agagatcgagatgaagatgatcttcagcgaactcgagattacgataggcgaagagacaatgacaaagatagagaggaccgacagagacacaagcctagctctaggggtagatccgagcatagatcaaggtctagatcacggtcaccatctaagagcaaaaggatcagtggttttgatatggcacctcccaccagtgcattgctatctggcgctactgatgttgcaggtcaagttcctgggaccactaacccatcaatacctggaatgttttctaacatgtttcctctagcagcaggccagtttggagctctccctattatgccagtccaggcaatgacacagcaggctaccagacatgctcggcgagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="62665" stop="65353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62965" g_stop="63011" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63302" g_stop="63409" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="155" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63410" i_stop="64064" i_length="655">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64065" g_stop="64135" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="226" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64745" g_stop="64818" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="300" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64819" i_stop="64895" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64896" g_stop="64940" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="345" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65027" g_stop="65053" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="372" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E269529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62965" e_stop="63011"/>
          <exon e_start="63302" e_stop="63409"/>
          <exon e_start="64065" e_stop="64135"/>
          <exon e_start="64745" e_stop="64818"/>
          <exon e_start="64896" e_stop="64940"/>
          <exon e_start="65027" e_stop="65053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAGGTGAGTTCAAATGCAGTTCTAAAAGTTAGTTGGATTCATGTTCTGTACCTCTTTTCAGGTACTCATGTATGATGATAATACATAATTGTGGTATTCATTTTAAGAATCATGTTTGATTTAATTTTGAAGTGCTGTTTTTTCTTTGTCACTGTTCTCTATGCTCGACATGCTTTAGTGTGAGCTTCATATGAGATTCACCATTCATGTGTTTGGTGCTTGCTGATTTAGTGTCTCAACCAATTTCTTATCTTTCTTATGTTCTTGTATATGATTGTTTATTTATCCCTCAGGCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAGGTTTGTCTTACTCCTATATCTTCTTGTAGGAGCATTATCAAGATACGTTTTATTGGTTATTTTTGATGTCCTAATGCTCCGTTAGACTGGTTTCTTTCTTTTGAACTTTGAGTGAAGCAAATTGTAATTTGCTGTGATGTTGGCAAGACTGGTCATTGGACTATTTGATCTGTCAATTTGGAAAGAAATCACAAGTGTTGATGTTTTAGAAATTAGAACTATAGATAGAATTGGGCTAAAACATTAGGTGAAGACTTTGTTATTTGGCCATATGAGCTGATGTTGCCATGTTGGCTTACAAAAGTATTTGTTCTTGCAAAATCTTAAAGCTACTATGATGACTTTCACTCTCTAATTACTGGAACCTATTGGATTTTAACTGTTTGTTCTTTTCCTTTATTTTTTTTTCCTTTTGAATTCTCTGGGGTAAAGTCTGTTTATATTCTACTTTACATTCTATTGGCCTCCCTAGACCTCACTTGTGGGATTGCACTGGGTATGTTGTTATTGTGATTTTTCTGTCAGTGGCTAACTTCTATACAGATCGTAGAAAGTTAAATTTTCAACCATTTTATTATTTCATTCTCAAAAAGAATAATTCATTCTCAAAAAAATTTATCACTTCGCTGTTGGTACTAATGATGGTTCTTTTCAGCAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAGGTTTATAATTTGTGACATTTCCTATTCTCTCTCGCTTATGGGCTTCTTTTACCTGAAAAGCATTTTATTAAATGTTGCTTTTTCAGGCTACCAGACATGCTCGGCGAGTTTAT</genome_strand>
        <mrna_strand>AGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG..................................................................................................................................................................................................................................................................................................GCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAG.............................................................................TTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG......................................................................................GCTACCAGACATGCTCGGCGAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550839" ref_strand="+" ref_description="SGN-E550839 [TUS-50-P21]">
      <seq>ttttgatatggcacctcccaccagtgcattgctatctggcgctactgatgttgcaggtcaagttcctgggaccactaacccatcaatacctggaatgttttctaacatgtttcctctagcagcaggccaggtactgtgacagatccttcttagcataccttcactggttatctatattctcatatatttgttttgtggcttctctagtttggagctctccctattatgccagtccaggcaatgacacagcaggctaccagacatgctcggcgagtttatgttggtggacttccgcctactgcaaatgaacagtcggttgctaccttctttagtcatgtcatgtatgcaatcggaggaaatactgctggtccaggggatgctgttgtcaacgtttatataaaccatgagaagaagtttgcctttgttgaaatgagatctgttgaggaagctagtaatgcaatggctttggatggtgtcatttttgagggcggaccggttaaggttagaagacccagtgattacaatccttccttggcagctacacttggtcctaagtcaccgagccccaacctcaacctggcagctgttggattgacaccaggttcttccggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="63780" stop="66841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64080" g_stop="64135" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64745" g_stop="64940" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="252" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65027" g_stop="65086" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="312" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65087" i_stop="65800" i_length="714">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65801" g_stop="65861" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="373" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65950" g_stop="66062" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="486" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66415" g_stop="66541" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="613" r_length="127" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E550839" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64080" e_stop="64135"/>
          <exon e_start="64745" e_stop="64940"/>
          <exon e_start="65027" e_stop="65086"/>
          <exon e_start="65801" e_stop="65861"/>
          <exon e_start="65950" e_stop="66062"/>
          <exon e_start="66415" e_stop="66541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAGGTTTATAATTTGTGACATTTCCTATTCTCTCTCGCTTATGGGCTTCTTTTACCTGAAAAGCATTTTATTAAATGTTGCTTTTTCAGGCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAGGTAGCAAACTTCCTCCCATGACTTTGCACATTGGCTGTTCTAAGATTTTGTCTGCTCAAGTTTGGAAGCCGCTGTTGTCTTTCTAGTTATTCTTTGTGGAATCATTTTAGTTTTTCCTTCACAAGCTACTGCTTGTAATATGGTGCAATATAGTGTCTTCACGTACATTTTCACAGCTGTGTATTCCATCTAATTAACTTTTTGACATAAACACTAACACATAGCTTTTCTGATTTACTGATGTCGTGCAGTCTGAAACCATTTGTAGTTGTAGGTATTTTTGTGTTTTTTTGCTAGACATCTTTATATTTTCTTCTAAATATATGGAATTGCTGCATCTGATCCTATAGTCTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTATATTCTACCCTCCCACACCCCACTTGTAGGATTTCAGCAGGTATGTTGTAGTTTTGGTTAGACCATTAATTCTTATGTTAGCATTTTTGAAATTTTATTCTCACGTGTGATGTTTCGTTCTCCATTGTAGTATTTTTTGTACTATGTCGGCCAAATTAGGCTTTTTTATGTGTCGTGTATGGAATCATCAAGTTTTGTCGTCCTCCAAAATTATCATTTGTTTGAGCTTCCTAATTTCATGATTTGGGTTAATTCTGCACTGCCATATTTTTGAGTACTTCCTATGTTTGCTGAAAGTTAATCTATATGCAGTCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAGGTTAGTTCATAGATTTATGTGGTTTTCCTTCTAGTATCACTATAAGTTTTCCTTTTTTAGGTGCTTAAAATATTGTTGAAATTTTCAGGGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAGGTACTAAAAATCATCTGATAGGTGTTTATATGTTAGCTTTCTACTTATGGTTGTAGGGTGTTCCTTGAAAACGAAGTAAAGAAAGAGAAGATTTTAGTTTCACCTCATTCACAGACTCTGATTCTCCCTATCTTGTTCGCCACCAGATAAAGTTTGGAACTAATGTCCCTTTGCCCCTTTCCCATTATATAATCTGGAGTCTGCAAACCCTGTCTTTCTGTGGTTTTTTATTTGTTTGTCTTCTTATGGTGATTTGTGGTGGTGGATAATGTATGACCAAAGCATCATGCTGCATTATGTCAAGTATTCTTATACATACATTTGTTTTCTGTGCACTTGATGTTTTGTTCAGGGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAG</genome_strand>
        <mrna_strand>TTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG......................................................................................GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG........................................................................................GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG................................................................................................................................................................................................................................................................................................................................................................GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAAGTCACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688564" ref_strand="+" ref_description="SGN-E688564 [t3_tus_50_p21]">
      <seq>ttttgatatggcacctcccaccagtgcattgctatctggcgctactgatgttgcaggtcaagttcctgggaccactaacccatcaatacctggaatgttttctaacatgtttcctctagcagcaggccaggtactgtgacagatccttcttagcataccttcactggttatctatattctcatatatttgttttgtggcttctctagtttggagctctccctattatgccagtccaggcaatgacacagcaggctaccagacatgctcggcgagtttatgttggtggacttccgcctactgcaaatgaacagtcggttgctaccttctttagtcatgtcatgtatgcaatcggaggaaatactgctggtccaggggatgctgttgtcaacgtttatataaaccatgagaagaagtttgcctttgttgaaatgagatctgttgaggaagctagtaatgcaatggctttggatggtgtcatttttgagggcggaccggttaaggttagaagacccagtgattacaatccttccttggcagctacacttggtcctagtcaaccgagccccaacctcaacctggcagctgttggattgacaccaggttcttccggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="63780" stop="66841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64080" g_stop="64135" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64745" g_stop="64940" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="252" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65027" g_stop="65086" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="312" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65087" i_stop="65800" i_length="714">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65801" g_stop="65861" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="373" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65950" g_stop="66062" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="486" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66415" g_stop="66541" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="613" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E688564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64080" e_stop="64135"/>
          <exon e_start="64745" e_stop="64940"/>
          <exon e_start="65027" e_stop="65086"/>
          <exon e_start="65801" e_stop="65861"/>
          <exon e_start="65950" e_stop="66062"/>
          <exon e_start="66415" e_stop="66541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAGGTTTATAATTTGTGACATTTCCTATTCTCTCTCGCTTATGGGCTTCTTTTACCTGAAAAGCATTTTATTAAATGTTGCTTTTTCAGGCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAGGTAGCAAACTTCCTCCCATGACTTTGCACATTGGCTGTTCTAAGATTTTGTCTGCTCAAGTTTGGAAGCCGCTGTTGTCTTTCTAGTTATTCTTTGTGGAATCATTTTAGTTTTTCCTTCACAAGCTACTGCTTGTAATATGGTGCAATATAGTGTCTTCACGTACATTTTCACAGCTGTGTATTCCATCTAATTAACTTTTTGACATAAACACTAACACATAGCTTTTCTGATTTACTGATGTCGTGCAGTCTGAAACCATTTGTAGTTGTAGGTATTTTTGTGTTTTTTTGCTAGACATCTTTATATTTTCTTCTAAATATATGGAATTGCTGCATCTGATCCTATAGTCTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTATATTCTACCCTCCCACACCCCACTTGTAGGATTTCAGCAGGTATGTTGTAGTTTTGGTTAGACCATTAATTCTTATGTTAGCATTTTTGAAATTTTATTCTCACGTGTGATGTTTCGTTCTCCATTGTAGTATTTTTTGTACTATGTCGGCCAAATTAGGCTTTTTTATGTGTCGTGTATGGAATCATCAAGTTTTGTCGTCCTCCAAAATTATCATTTGTTTGAGCTTCCTAATTTCATGATTTGGGTTAATTCTGCACTGCCATATTTTTGAGTACTTCCTATGTTTGCTGAAAGTTAATCTATATGCAGTCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAGGTTAGTTCATAGATTTATGTGGTTTTCCTTCTAGTATCACTATAAGTTTTCCTTTTTTAGGTGCTTAAAATATTGTTGAAATTTTCAGGGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAGGTACTAAAAATCATCTGATAGGTGTTTATATGTTAGCTTTCTACTTATGGTTGTAGGGTGTTCCTTGAAAACGAAGTAAAGAAAGAGAAGATTTTAGTTTCACCTCATTCACAGACTCTGATTCTCCCTATCTTGTTCGCCACCAGATAAAGTTTGGAACTAATGTCCCTTTGCCCCTTTCCCATTATATAATCTGGAGTCTGCAAACCCTGTCTTTCTGTGGTTTTTTATTTGTTTGTCTTCTTATGGTGATTTGTGGTGGTGGATAATGTATGACCAAAGCATCATGCTGCATTATGTCAAGTATTCTTATACATACATTTGTTTTCTGTGCACTTGATGTTTTGTTCAGGGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAG</genome_strand>
        <mrna_strand>TTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG......................................................................................GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG........................................................................................GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG................................................................................................................................................................................................................................................................................................................................................................GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210620" ref_strand="+" ref_description="SGN-E210620 [cLEC-68-A14]">
      <seq>tttgatatggcacctcccaccagtgcattgctatctggcgctactgatgttgcaggtcaagttcctgggaccactaacccatcaatacctggaatgttttctaacatgtttcctctagcagcaggccaggtactgtgacagatccttcttagcataccttcactggttatctatattctcatatatttgttttgtggcttctctagtttggagctctccctattatgccagtccaggcaatgacacagcaggctaccagacatgctcggcgagtttatgttggtggacttccgcctactgcaaatgaacagtcggttgctaccttctttagtcatgtcatgtatgcaatcggaggaaatactgctggtccaggggatgctgttgtcaacgtttatataaaccatgagaagaagtttgcctttgttgaaatgagatctgttgaggaagctagtaatgcaatggctttggatggtgtcatttttgagggcggaccggttaaggttagaagacccagtgattacaatccttccttggcagctacacttggtcctagtcaaccgagccccaacctcaacctggcagctgttggattgacaccaggttcttccggagggcttgaaggacctgaccgtatattttgttggtggtttaccctattattttacagaatcacaaatcagggaacttttagagtcttttggtcaaacttcgaggatttgatctggtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="63781" stop="66956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64081" g_stop="64135" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64745" g_stop="64940" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="251" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65027" g_stop="65086" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="311" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65087" i_stop="65800" i_length="714">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65801" g_stop="65861" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="372" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65950" g_stop="66062" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="485" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66415" g_stop="66656" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="729" r_length="244" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E210620" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64081" e_stop="64135"/>
          <exon e_start="64745" e_stop="64940"/>
          <exon e_start="65027" e_stop="65086"/>
          <exon e_start="65801" e_stop="65861"/>
          <exon e_start="65950" e_stop="66062"/>
          <exon e_start="66415" e_stop="66656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAGGTTTATAATTTGTGACATTTCCTATTCTCTCTCGCTTATGGGCTTCTTTTACCTGAAAAGCATTTTATTAAATGTTGCTTTTTCAGGCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAGGTAGCAAACTTCCTCCCATGACTTTGCACATTGGCTGTTCTAAGATTTTGTCTGCTCAAGTTTGGAAGCCGCTGTTGTCTTTCTAGTTATTCTTTGTGGAATCATTTTAGTTTTTCCTTCACAAGCTACTGCTTGTAATATGGTGCAATATAGTGTCTTCACGTACATTTTCACAGCTGTGTATTCCATCTAATTAACTTTTTGACATAAACACTAACACATAGCTTTTCTGATTTACTGATGTCGTGCAGTCTGAAACCATTTGTAGTTGTAGGTATTTTTGTGTTTTTTTGCTAGACATCTTTATATTTTCTTCTAAATATATGGAATTGCTGCATCTGATCCTATAGTCTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTATATTCTACCCTCCCACACCCCACTTGTAGGATTTCAGCAGGTATGTTGTAGTTTTGGTTAGACCATTAATTCTTATGTTAGCATTTTTGAAATTTTATTCTCACGTGTGATGTTTCGTTCTCCATTGTAGTATTTTTTGTACTATGTCGGCCAAATTAGGCTTTTTTATGTGTCGTGTATGGAATCATCAAGTTTTGTCGTCCTCCAAAATTATCATTTGTTTGAGCTTCCTAATTTCATGATTTGGGTTAATTCTGCACTGCCATATTTTTGAGTACTTCCTATGTTTGCTGAAAGTTAATCTATATGCAGTCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAGGTTAGTTCATAGATTTATGTGGTTTTCCTTCTAGTATCACTATAAGTTTTCCTTTTTTAGGTGCTTAAAATATTGTTGAAATTTTCAGGGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAGGTACTAAAAATCATCTGATAGGTGTTTATATGTTAGCTTTCTACTTATGGTTGTAGGGTGTTCCTTGAAAACGAAGTAAAGAAAGAGAAGATTTTAGTTTCACCTCATTCACAGACTCTGATTCTCCCTATCTTGTTCGCCACCAGATAAAGTTTGGAACTAATGTCCCTTTGCCCCTTTCCCATTATATAATCTGGAGTCTGCAAACCCTGTCTTTCTGTGGTTTTTTATTTGTTTGTCTTCTTATGGTGATTTGTGGTGGTGGATAATGTATGACCAAAGCATCATGCTGCATTATGTCAAGTATTCTTATACATACATTTGTTTTCTGTGCACTTGATGTTTTGTTCAGGGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATA-TTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTC-AACTTCGAGGATTTGATCTGGTCAA</genome_strand>
        <mrna_strand>TTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG......................................................................................GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG........................................................................................GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG................................................................................................................................................................................................................................................................................................................................................................GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAAACTTCGAGGATTTGATCTGGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347514" ref_strand="+" ref_description="SGN-E347514 [cTOF-33-P20]">
      <seq>ctcccaccagtgcattgctatctggcgctactgatgttgcaggtcaagttcctgggaccactaacccatcaatacctggaatgttttctaacatgtttcctctagcagcaggccagtttggagctctccctattatgccagtccaggcaatgacacagcaggctaccagacatgctcggcgagtttatgttggtggacttccgcctactgcaaatgaacagtcggttgctaccttctttagtcatgtcatgtatgcaatcggaggaaatactgctggtccaggggatgctgttgtcaacgtttatataaaccatgagaagaagtttgcctttgttgaaatgagatctgttgaggaagctagtaatgcaatggctttggatggtgtcatttttgagggcggaccggttaaggttagaagacccagtgattacaatccttccttggcagctacacttggtcctagtcaaccgagccccaacctcaacctggcagctgttggattgacaccaggttcttccggagggcttgaaggacctgaccgtatatttgttgggtggtttaccctattattttacagaatcacaaatcagggaacttttagagtcttttggtcaacttcgaggatttgatctggtcaaagatagagaaactgggaattcaaaaggttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="63794" stop="66989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64094" g_stop="64135" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64745" g_stop="64818" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="116" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64819" i_stop="64895" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64896" g_stop="64940" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="161" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65027" g_stop="65086" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="221" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65087" i_stop="65800" i_length="714">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65801" g_stop="65861" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="282" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65950" g_stop="66062" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="395" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66415" g_stop="66689" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="671" r_length="276" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E347514" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64094" e_stop="64135"/>
          <exon e_start="64745" e_stop="64818"/>
          <exon e_start="64896" e_stop="64940"/>
          <exon e_start="65027" e_stop="65086"/>
          <exon e_start="65801" e_stop="65861"/>
          <exon e_start="65950" e_stop="66062"/>
          <exon e_start="66415" e_stop="66689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAGGTTTATAATTTGTGACATTTCCTATTCTCTCTCGCTTATGGGCTTCTTTTACCTGAAAAGCATTTTATTAAATGTTGCTTTTTCAGGCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAGGTAGCAAACTTCCTCCCATGACTTTGCACATTGGCTGTTCTAAGATTTTGTCTGCTCAAGTTTGGAAGCCGCTGTTGTCTTTCTAGTTATTCTTTGTGGAATCATTTTAGTTTTTCCTTCACAAGCTACTGCTTGTAATATGGTGCAATATAGTGTCTTCACGTACATTTTCACAGCTGTGTATTCCATCTAATTAACTTTTTGACATAAACACTAACACATAGCTTTTCTGATTTACTGATGTCGTGCAGTCTGAAACCATTTGTAGTTGTAGGTATTTTTGTGTTTTTTTGCTAGACATCTTTATATTTTCTTCTAAATATATGGAATTGCTGCATCTGATCCTATAGTCTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTATATTCTACCCTCCCACACCCCACTTGTAGGATTTCAGCAGGTATGTTGTAGTTTTGGTTAGACCATTAATTCTTATGTTAGCATTTTTGAAATTTTATTCTCACGTGTGATGTTTCGTTCTCCATTGTAGTATTTTTTGTACTATGTCGGCCAAATTAGGCTTTTTTATGTGTCGTGTATGGAATCATCAAGTTTTGTCGTCCTCCAAAATTATCATTTGTTTGAGCTTCCTAATTTCATGATTTGGGTTAATTCTGCACTGCCATATTTTTGAGTACTTCCTATGTTTGCTGAAAGTTAATCTATATGCAGTCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAGGTTAGTTCATAGATTTATGTGGTTTTCCTTCTAGTATCACTATAAGTTTTCCTTTTTTAGGTGCTTAAAATATTGTTGAAATTTTCAGGGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAGGTACTAAAAATCATCTGATAGGTGTTTATATGTTAGCTTTCTACTTATGGTTGTAGGGTGTTCCTTGAAAACGAAGTAAAGAAAGAGAAGATTTTAGTTTCACCTCATTCACAGACTCTGATTCTCCCTATCTTGTTCGCCACCAGATAAAGTTTGGAACTAATGTCCCTTTGCCCCTTTCCCATTATATAATCTGGAGTCTGCAAACCCTGTCTTTCTGTGGTTTTTTATTTGTTTGTCTTCTTATGGTGATTTGTGGTGGTGGATAATGTATGACCAAAGCATCATGCTGCATTATGTCAAGTATTCTTATACATACATTTGTTTTCTGTGCACTTGATGTTTTGTTCAGGGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTT-GGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGC</genome_strand>
        <mrna_strand>CTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAG.............................................................................TTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG......................................................................................GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG........................................................................................GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG................................................................................................................................................................................................................................................................................................................................................................GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596475" ref_strand="+" ref_description="SGN-E596475 [39958]">
      <seq>gttctaagaaggcaatgttgggctacttgccccactgtgctgacaatgggcgtgagccgacttctgtagcttatatgtacaaggaagaatcgatacaggtcaagttccggggacgactaacccatcaattcctggaatgttttctaacatgtttcctctagcagcaggccagtttggagctctccctattatgccagtccaggcaatgacacagcaggctaccagacatgctcggcgagtttatgttggtggacttccacctactgcaaatgaacagtcggttgctaccttctttagtcatgtcatgtatgcaatcggaggaaacactgctggtccaggggatgctgttgtcaacgtttatataaaccatgagaagaagtttgcctttgttgaaatgagatctgttgaggaagctagtaatgccatggctttggatggtgtcatttttgagggcggaccagttaaggttagaagacccagtgattacaatccttccttggcagctactcttggtcctagtcaaccgagccccaacctcaacctggcagctgttggattgacaccaggttcttccggagggcttgaaggacctgaccgtatatttgttggtggtttgccctattattttacagaatcacaaatcagggaacttttagagtcttttggtcaacttcgaggatttgatctggtcaaagatagagaaactggggaactcaaaaggttatgctttttgtgtgtaccaggatgtgtctgttactgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="64106" stop="67024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64406" g_stop="64503" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64504" i_stop="64744" i_length="241">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64745" g_stop="64818" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="172" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64819" i_stop="64895" i_length="77">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64896" g_stop="64940" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="217" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65027" g_stop="65086" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="277" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65087" i_stop="65800" i_length="714">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65801" g_stop="65861" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="338" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65950" g_stop="66062" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="451" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66415" g_stop="66724" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="762" r_length="311" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E596475" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64406" e_stop="64503"/>
          <exon e_start="64745" e_stop="64818"/>
          <exon e_start="64896" e_stop="64940"/>
          <exon e_start="65027" e_stop="65086"/>
          <exon e_start="65801" e_stop="65861"/>
          <exon e_start="65950" e_stop="66062"/>
          <exon e_start="66415" e_stop="66724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAGGTTTATAATTTGTGACATTTCCTATTCTCTCTCGCTTATGGGCTTCTTTTACCTGAAAAGCATTTTATTAAATGTTGCTTTTTCAGGCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAGGTAGCAAACTTCCTCCCATGACTTTGCACATTGGCTGTTCTAAGATTTTGTCTGCTCAAGTTTGGAAGCCGCTGTTGTCTTTCTAGTTATTCTTTGTGGAATCATTTTAGTTTTTCCTTCACAAGCTACTGCTTGTAATATGGTGCAATATAGTGTCTTCACGTACATTTTCACAGCTGTGTATTCCATCTAATTAACTTTTTGACATAAACACTAACACATAGCTTTTCTGATTTACTGATGTCGTGCAGTCTGAAACCATTTGTAGTTGTAGGTATTTTTGTGTTTTTTTGCTAGACATCTTTATATTTTCTTCTAAATATATGGAATTGCTGCATCTGATCCTATAGTCTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTATATTCTACCCTCCCACACCCCACTTGTAGGATTTCAGCAGGTATGTTGTAGTTTTGGTTAGACCATTAATTCTTATGTTAGCATTTTTGAAATTTTATTCTCACGTGTGATGTTTCGTTCTCCATTGTAGTATTTTTTGTACTATGTCGGCCAAATTAGGCTTTTTTATGTGTCGTGTATGGAATCATCAAGTTTTGTCGTCCTCCAAAATTATCATTTGTTTGAGCTTCCTAATTTCATGATTTGGGTTAATTCTGCACTGCCATATTTTTGAGTACTTCCTATGTTTGCTGAAAGTTAATCTATATGCAGTCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAGGTTAGTTCATAGATTTATGTGGTTTTCCTTCTAGTATCACTATAAGTTTTCCTTTTTTAGGTGCTTAAAATATTGTTGAAATTTTCAGGGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAGGTACTAAAAATCATCTGATAGGTGTTTATATGTTAGCTTTCTACTTATGGTTGTAGGGTGTTCCTTGAAAACGAAGTAAAGAAAGAGAAGATTTTAGTTTCACCTCATTCACAGACTCTGATTCTCCCTATCTTGTTCGCCACCAGATAAAGTTTGGAACTAATGTCCCTTTGCCCCTTTCCCATTATATAATCTGGAGTCTGCAAACCCTGTCTTTCTGTGGTTTTTTATTTGTTTGTCTTCTTATGGTGATTTGTGGTGGTGGATAATGTATGACCAAAGCATCATGCTGCATTATGTCAAGTATTCTTATACATACATTTGTTTTCTGTGCACTTGATGTTTTGTTCAGGGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACT-GGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATA</genome_strand>
        <mrna_strand>GTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAG.................................................................................................................................................................................................................................................GTCAAGTTCCGGGGACGACTAACCCATCAATTCCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAG.............................................................................TTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG......................................................................................GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCACCTACTGCAAATGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAACACTGCTGGTCCAG........................................................................................GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCCATGGCTTTGGATGGTGTCATTTTTGAG................................................................................................................................................................................................................................................................................................................................................................GGCGGACCAGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACTCTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTGCCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGGAACTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTGTCTGTTACTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705465" ref_strand="+" ref_description="SGN-E705465 [FA27AH11]">
      <seq>ccttctttagtcatgtcatgtatgcaatcggaggaaatactgctggtccaggggatgctgttgtcaacgtttatataaaccatgagaagaagtttgcctttgttgaaatgagatctgttgaggaagctagtaatgcaatggctttggatggtgtcatttttgagggcggaccggttaaggttagaagacccagtgattacaatccttccttggcagctacacttggtcctagtcaaccgagccccaacctcaacctggcagctgttggattgacaccaggttcttccggagggcttgaaggacctgaccgtatatttgttggtggtttaccctattattttacagaatcacaaatcagggaacttttagagtcttttggtcaacttcgaggatttgatctggtcaaagatagagaaactgggaattcaaaaggttatgctttttgtgtgtaccaggatgtctctgttactgatattgcttgtgcagctcttaatgggattaagatgggggataaaactcttactgttaggcgggctaaccagggcacaacccaacccaaccctgagcaagagagtgtattgttgcatgcacaacagcagatagctttgcagaggttcatgttacaacctggtgcattagccacaaaggttttgtgcttgacagaagtggttagcgtagatgagctcaaagatgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggcgagcctacacctggactcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="65511" stop="67572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65811" g_stop="65861" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65950" g_stop="66062" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="164" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66415" g_stop="66861" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="611" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66968" g_stop="67103" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="747" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67208" g_stop="67272" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="812" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E705465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65811" e_stop="65861"/>
          <exon e_start="65950" e_stop="66062"/>
          <exon e_start="66415" e_stop="66861"/>
          <exon e_start="66968" e_stop="67103"/>
          <exon e_start="67208" e_stop="67272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAGGTTAGTTCATAGATTTATGTGGTTTTCCTTCTAGTATCACTATAAGTTTTCCTTTTTTAGGTGCTTAAAATATTGTTGAAATTTTCAGGGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAGGTACTAAAAATCATCTGATAGGTGTTTATATGTTAGCTTTCTACTTATGGTTGTAGGGTGTTCCTTGAAAACGAAGTAAAGAAAGAGAAGATTTTAGTTTCACCTCATTCACAGACTCTGATTCTCCCTATCTTGTTCGCCACCAGATAAAGTTTGGAACTAATGTCCCTTTGCCCCTTTCCCATTATATAATCTGGAGTCTGCAAACCCTGTCTTTCTGTGGTTTTTTATTTGTTTGTCTTCTTATGGTGATTTGTGGTGGTGGATAATGTATGACCAAAGCATCATGCTGCATTATGTCAAGTATTCTTATACATACATTTGTTTTCTGTGCACTTGATGTTTTGTTCAGGGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAGGTAGAGATACTTCTATGCTCTTCCATTCAGTTTTCAAGTTCTTAGGCTTTAACACTTTTATAAAAAGGACTTTCAAGCTCACCCTTAGTGTTTTTTTCTTCTACAGAGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGG</genome_strand>
        <mrna_strand>CCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG........................................................................................GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG................................................................................................................................................................................................................................................................................................................................................................GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG..........................................................................................................AGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400443" ref_strand="+" ref_description="SGN-E400443 [cSTC-9-D6]">
      <seq>ccgtatatttgttggtggtttgccctattattttacagaatcacaaatcagggaacttttagagtcttttggtcaacttcgaggatttgatctggtcaaagatagagaaactgggaactcaaaaggttatgctttttgtgtgtaccaggatgtgtctgttactgatattgcttgtgcagcccttaatgggattaagatgggggataaaactcttactgttaggcgggctaaccagggcacaacccaacccaaccctgagcaagagagtgtattattgcatgcacaacagcagatagctttgcagagattcatgttacaacctggtgcattatccacgaaggttttgtgcttaacagaagtggttagcgtagatgagctcaaagatgatgatgactatcaagatattttggaagatatgaggattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66258" stop="67390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66558" g_stop="66861" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.815" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66968" g_stop="67090" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="427" r_length="123" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E400443" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66558" e_stop="66861"/>
          <exon e_start="66968" e_stop="67090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAGGTAGAGATACTTCTATGCTCTTCCATTCAGTTTTCAAGTTCTTAGGCTTTAACACTTTTATAAAAAGGACTTTCAAGCTCACCCTTAGTGTTTTTTTCTTCTACAGAGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAA</genome_strand>
        <mrna_strand>CCGTATATTTGTTGGTGGTTTGCCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAACTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTGTCTGTTACTGATATTGCTTGTGCAGCCCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTATTGCATGCACAACAGCAGATAGCTTTGCAG..........................................................................................................AGATTCATGTTACAACCTGGTGCATTATCCACGAAGGTTTTGTGCTTAACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423257" ref_strand="-" ref_description="SGN-E423257 [STM-41-B22]">
      <seq>tatatttgttggtggtttgccctattattttacagaatcacaaatcagggaacttttagagtcttttggtcaacttcgaggatttngatctggtcaaagatagagaaactgggaactcaaaaggttatgctttttgtgtgtaccaggatgtgtctgttactgatattgcttgtgcagcccttaatgggattaagatgggggataaaactcttactgttaggcgggctaaccagggcacaacccaaccccaaccctgagcaagagagtgtattattgcatgcacaacagcagatagctttgcagagattcatgttacaacctggtgcattagccacgaaggttttgtgcttaacagaagtggttagcgtagatgagctcaaagatgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggtgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcggcaagggctgaatggaagaaaatttggtggtaaccaagttgttgccgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaatcactatagctatgacatactattcagattactacagggagttgtttgcaatgtcttgtaggaattatatcccccttttgacaaagagggattaaagtctcctgtttctttttctgttttttttgcttttttgttttggtgagcatgggatattttattctggatttcaaatttagtttgtggttaaagctgatgtaaagtatcaaacaatgtaaattattgggttgtttgaatgcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66261" stop="68220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66561" g_stop="66861" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66968" g_stop="67103" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="439" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="507" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67580" g_stop="67954" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="892" r_length="385" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E423257" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423257" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66561" e_stop="66861"/>
          <exon e_start="66968" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTT-GATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAA-CCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAGGTAGAGATACTTCTATGCTCTTCCATTCAGTTTTCAAGTTCTTAGGCTTTAACACTTTTATAAAAAGGACTTTCAAGCTCACCCTTAGTGTTTTTTTCTTCTACAGAGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGC-ATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGA-TTATT--AGTGTCCTG--TC--TTT-T-TTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGA-TT-AAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGAATGTCTTTT</genome_strand>
        <mrna_strand>TATATTTGTTGGTGGTTTGCCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTNGATCTGGTCAAAGATAGAGAAACTGGGAACTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTGTCTGTTACTGATATTGCTTGTGCAGCCCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCCAACCCTGAGCAAGAGAGTGTATTATTGCATGCACAACAGCAGATAGCTTTGCAG..........................................................................................................AGATTCATGTTACAACCTGGTGCATTAGCCACGAAGGTTTTGTGCTTAACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGTGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGGCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTGTTGCCGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAATCACTATAGCTATGACATACTATTCAGATTACTACAGGGAGTTGTTTGCAATGTCTTGTAGGAATTATATCCCCCTTTTGACAAAGAGGGATTAAAGTCTCCTGTTTCTTTTTCTGTTTTTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTTCAAATTTAGTTTGTGGTTAAAGCTGATGTAAAGTATCAAACA-ATGTA-AATTATTGGGTTGTTTGAATGCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558300" ref_strand="+" ref_description="SGN-E558300 [17619]">
      <seq>tctggtcaagatagagaaactgggaactcaaaaggttatgctttttgtgtgtaccaggatgtgtctgttactgatattgcttgtgcagcccttaatgggattaagatgggggataaaactcttactgttaggcgggctaaccagggcacaacccaatccaaccctgacaagagagtgtattattgcatgcacaacagcagatagctttgcagagattcatgttacaacctggtgcattagccacgaaggttttgtgcttaacagaagtggttagcgtagaaagctcaaagatgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacggtccaaatcctaagtggtgagcctacacctggtactcgggaaggtattcctggagtatgcagatgttgacagttccagcagagctcggcaagggctgaatggaagaaaatttggtggtaaccaagttgttgccgtcttctatccagagaacaagttctctgaggagattacgaggttaactgtaatcactatagctatgacatactattcagattactacagggagttgtttgcaatgtcttgtagggaattatatcccccttttgacaaagaaggattaaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66348" stop="68109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66648" g_stop="66861" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66968" g_stop="67103" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="347" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="418" r_length="71" r_score="0.897"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="0.85"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67580" g_stop="67821" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="661" r_length="243" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E558300" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66648" e_stop="66861"/>
          <exon e_start="66968" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAGGTAGAGATACTTCTATGCTCTTCCATTCAGTTTTCAAGTTCTTAGGCTTTAACACTTTTATAAAAAGGACTTTCAAGCTCACCCTTAGTGTTTTTTTCTTCTACAGAGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCAC-GTCCAAATCCTAA-TGGCGAGCCTACACCTGG-ACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGC-ATGTCCTATA-GGAATTATATCCCCCTTTTGACAAAG-ATTATTAGTGTCC</genome_strand>
        <mrna_strand>TCTGGTC-AAGATAGAGAAACTGGGAACTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTGTCTGTTACTGATATTGCTTGTGCAGCCCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAATCCAACCCTGA-CAAGAGAGTGTATTATTGCATGCACAACAGCAGATAGCTTTGCAG..........................................................................................................AGATTCATGTTACAACCTGGTGCATTAGCCACGAAGGTTTTGTGCTTAACAGAAGTGGTTAGCGTAGA-AAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGGTCCAAATCCTAAGTGGTGAGCCTACACCTGGTACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAGAGCTCGGCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTGTTGCCGTCTTCTATCCAGAGAACAAGTTCTCTGA-GGAGATTACGAGG-TTAACTGTAATCACTATAGCTATGACATACTATTCAGATTACTACAGGGAGTTGTTTGCAATGTCTTGTAGGGAATTATATCCCCCTTTTGACAAAGAAGGATTAAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577139" ref_strand="-" ref_description="SGN-E577139 [33112]">
      <seq>gtgtgtaccaggaggtgtctgtactgatattgcttgtgcagcccnttaatgggattaagatggggggataaaactcttactgttagcgggctaaccagggcacaacccaacccaaccctgagcaagagagtgtattattgcatgcacaacagcagatagctttgcagagattcatgttacaacctggtgcattagccacgaaggttttgtgcttaacagaagtggttagcgtagatgagctcaaagatgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggtgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcggcaagggctgaatggaagaaaatttggtggtaaccaagttgttgctgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaatcactatagctatgacatactattcagattactacagggagttgtttgcaatgtcttgtaggaattatatcccccttttgacaaagagggattaaagtctcctgtttctttttcttttttttttgcttttttgttttggtgagcatgggatattttattctggatttcaaatttagtttgtggttaaagctgatgtaaagtatcaaacaggaatagttattgggttgtttgaatgcgtttttttctttttataattatggctagtacccatttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66395" stop="68287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66695" g_stop="66861" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66968" g_stop="67103" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="303" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="371" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67580" g_stop="67974" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="777" r_length="406" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E577139" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577139" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66695" e_stop="66861"/>
          <exon e_start="66968" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTC-TTAATGGGATTAAGAT-GGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAGGTAGAGATACTTCTATGCTCTTCCATTCAGTTTTCAAGTTCTTAGGCTTTAACACTTTTATAAAAAGGACTTTCAAGCTCACCCTTAGTGTTTTTTTCTTCTACAGAGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGC-ATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGA-TTATT--AGTGTCCTG--TC---TT-TTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGA-TT-AAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGAATG-TCTTTTTTCTTTTTATAATTATGGCT</genome_strand>
        <mrna_strand>GTGTGTACCAGGAGGTGTCTG-TACTGATATTGCTTGTGCAGCCCNTTAATGGGATTAAGATGGGGGGATAAAACTCTTACTGTTA-GCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTATTGCATGCACAACAGCAGATAGCTTTGCAG..........................................................................................................AGATTCATGTTACAACCTGGTGCATTAGCCACGAAGGTTTTGTGCTTAACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGTGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGGCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTGTTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAATCACTATAGCTATGACATACTATTCAGATTACTACAGGGAGTTGTTTGCAATGTCTTGTAGGAATTATATCCCCCTTTTGACAAAGAGGGATTAAAGTCTCCTGTTTCTTTTTCTTTTTTTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTTCAAATTTAGTTTGTGGTTAAAGCTGATGTAAAGTATCAAACAGGAATA--GTTATTGGGTTGTTTGAATGCGTTTTTTTCTTTTTATAATTATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572245" ref_strand="-" ref_description="SGN-E572245 [31368]">
      <seq>gtgtacccaggatgtgtctgttactgatattgcttgtgcagcccttaatgggattaagatgggggataaaactcttactgttaggcgggctaaccagggcacaacccaacccaaccctgagcaagagagtgtattattgcatgcacaacagcagatagctttgcagagattcatgttacaacctggtgcattagccacgaaggttttgtgcttaacagaagtggttagcgtagatgagctcaaagatgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggtgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcggcaagggctgaatggaagaaaatttggtggtaaccaagttgttgctgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaatcactatagctatgacatactattcagattactacagggagttgtttgcaatgtcttgtaggaattatatcccccttttgacaaagagggattaaagtctcctgtttctttttctttttttttgcttttttgttttggtgagcatgggatattttattctggatttcaaatttagtttgtggttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66397" stop="68199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66697" g_stop="66861" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66968" g_stop="67103" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="302" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="370" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67580" g_stop="67899" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="701" r_length="331" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E572245" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572245" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66697" e_stop="66861"/>
          <exon e_start="66968" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTA-CCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAGGTAGAGATACTTCTATGCTCTTCCATTCAGTTTTCAAGTTCTTAGGCTTTAACACTTTTATAAAAAGGACTTTCAAGCTCACCCTTAGTGTTTTTTTCTTCTACAGAGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGC-ATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGA-TTATT--AGTGTCCTG--TC--TTT-TTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGA-TT-AAATTTAGTTTGTGGTTAAA</genome_strand>
        <mrna_strand>GTGTACCCAGGATGTGTCTGTTACTGATATTGCTTGTGCAGCCCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTATTGCATGCACAACAGCAGATAGCTTTGCAG..........................................................................................................AGATTCATGTTACAACCTGGTGCATTAGCCACGAAGGTTTTGTGCTTAACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGTGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGGCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTGTTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAATCACTATAGCTATGACATACTATTCAGATTACTACAGGGAGTTGTTTGCAATGTCTTGTAGGAATTATATCCCCCTTTTGACAAAGAGGGATTAAAGTCTCCTGTTTCTTTTTCTTTTTTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTTCAAATTTAGTTTGTGGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548172" ref_strand="+" ref_description="SGN-E548172 [TUS-58-L24]">
      <seq>tgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggcgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcgccaagggctgaatggaagaaaatttggtggtaaccaagttattgctgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaaccactatagctgtgacataatattcagattattacagggagttgtttgcatgtcctataggaattatatcccccttttgacaaagattattagtgtcctgtctttttttcttttgcttttttgttttggtgagcatgggatattttattctggattaaatttagtttgtggttaaagctggtgtaaagtatcaaacaggaatagtgttatcggngttgtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66748" stop="68246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67048" g_stop="67103" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="124" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67580" g_stop="67945" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="491" r_length="367" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="501"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E548172" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67048" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGG-GTTGTTTGA</genome_strand>
        <mrna_strand>TGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGNGTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539759" ref_strand="+" ref_description="SGN-E539759 [TUS-59-K23]">
      <seq>tgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggcgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcgccaagggctgaatggaagaaaatttggtggtaaccaagttattgctgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaaccactatagctgtgacataatattcagattattacagggagttgtttgcatgtcctataggaattatatcccccttttgacaaagattattagtgtcctgtctttttttcttttgcttttttgttttggtgagcatgggatattttattctggattaaatttagtttgtggttaaagctggtgtaaagtatcaaacaggaatagtgttatcgggttgtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66748" stop="68246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67048" g_stop="67103" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="124" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67580" g_stop="67945" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="490" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E539759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67048" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGA</genome_strand>
        <mrna_strand>TGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539140" ref_strand="+" ref_description="SGN-E539140 [TUS-58-L24](-)">
      <seq>tgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggcgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcgccaagggctgaatggaagaaaatttggtggtaaccaagttattgctgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaaccactatagctgtgacataatattcagattattacagggagttgtttgcatgtcctataggaattatatcccccttttgacaaagattattagtgtcctgtctttttttcttttgcttttttgttttggtgagcatgggatattttattctggattaaatttagtttgtggttaaagctggtgtaaagtatcaaacaggacatagtgttatcgggttgttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66748" stop="68246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67048" g_stop="67103" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="124" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67580" g_stop="67939" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="485" r_length="361" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="500"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E539140" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67048" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGA-ATAGTGTTATCGGGTT</genome_strand>
        <mrna_strand>TGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGACATAGTGTTATCGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539757" ref_strand="+" ref_description="SGN-E539757 [TUS-59-K23](-)">
      <seq>tgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggcgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcgccaagggctgaatggaagaaaatttggtggtaaccaagttattgctgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaaccactatagctgtgacataatattcagattattacagggagttgtttgcatgtcctataggaattatatcccccttttgacaaagattattagtgtcctgtctttttttcttttgcttttttgttttggtgagcatgggatattttattctggattaaatttagtttgtggttaaagctggtgtaaagtatcaaacaggaatagtgttatcgggttgttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66748" stop="68246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67048" g_stop="67103" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="124" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67580" g_stop="67939" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="484" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="499"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E539757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67048" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTT</genome_strand>
        <mrna_strand>TGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279916" ref_strand="+" ref_description="SGN-E279916 [cLER-8-E18]">
      <seq>gatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggcgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcgccaagggctgaatggaagaaaatttggtggtaaccaagttattgctgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaaccactatagctgtgacataatattcagattattacagggagttgtttgcatgtcctataggaattatatcccccttttgacaaagattattagtgtcctgtctttttttcttttgcttttttgttttggtgagcatgggatattttattctggattaaatttagtttgtggttaaagctggtgtaaagtatcaaacaggaatagtgttatcgggttgtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="66749" stop="68246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67049" g_stop="67103" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67208" g_stop="67275" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="123" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67580" g_stop="67945" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="489" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="499"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E279916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67049" e_stop="67103"/>
          <exon e_start="67208" e_stop="67275"/>
          <exon e_start="67580" e_stop="67945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGA</genome_strand>
        <mrna_strand>GATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318077" ref_strand="+" ref_description="SGN-E318077 [cTOA-29-G4]">
      <seq>ttttcacattaaatttcctctctttctctctattgatttccgagccgccgacttgcgttgtcacaactgcttctcattttcatcgagtttttcttcattacttttacttataagcaaacccatttactcgaacttagcgactttcccggcagaaagttcacgccggtgattgactttctggtgattttggaatctgggtttttcagctaatttctatgttatggggatttgctattttagcttggtttgatcaaaactggtagttgggtgtatgaaagaaagaaaaacgaaaaagcaagattgactggtagatacggcgaaaagagagaaagtattgactcccccaagaaaagattgatatcaaaaaggtttttttaacataaatgttctaaagatttgcttttttgagcaacccccccccccaaaaaaaaaaaaaaaaaacatgccggccgacccagataactcatccgccatgaacgattctacaggctcaggtgaagcaagcgtttcgtcttcaggtaatcaagtagttcctctgaaagaatcagccaagaagaaacggaatcttcctgggatgccagatttgattttctgtttttggttgctttgattagatcccgatgcagaggttattgctttgtcaccaacaactttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="72199" stop="73514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72499" g_stop="73079" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73080" i_stop="73137" i_length="58">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73138" g_stop="73214" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="658" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E318077" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72499" e_stop="73079"/>
          <exon e_start="73138" e_stop="73214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCCAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAGGTAAATCATGTTCCGTTACGATTCTTGATGAACCCAATTTTACTAATATTCAGCGAAGATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTG</genome_strand>
        <mrna_strand>TTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCAAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAG..........................................................ATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367209" ref_strand="+" ref_description="SGN-E367209 [cLPT-5-I7]">
      <seq>accgtcaactgccgtaatgtcatttgcttcctctgttcaaaatcgagaattgcgggagaatccagtcacaaattctgctggagctgctacgaagcaagttctggaggaagcagcagcggtagcaagcttgactggaaactgtagcagctcttgtagtaatggaagtagtagcagcaatgtctttggaagtttgtttgcttcatcaacagcttcgggaagtttgccatctcaagctcctgttttttctgatatgtttcgagccatggcgcctgagcacactcttgagatggcaccaccttcatctacagaaccaatatctctcggcctagcgatgagtcacagttcgtcaatttttagaccagctggtcaagaacggaggcaatatgctcccgcaccacaaccagctatgtcggcaacagcattactgcagaaggcagctcagatgggtgcagcagcaaccagctcatcgttgttgaggggcattggggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="73578" stop="75132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73878" g_stop="73924" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73925" i_stop="74386" i_length="462">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74387" g_stop="74832" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="493" r_length="446" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E367209" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73878" e_stop="73924"/>
          <exon e_start="74387" e_stop="74832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAGGTACCTTCTCTGCGTTTGATGTTTGTCGCATTTGTGTTTGTTACATATCAAACAAAATAACTTTGTTGTTTCTATATCTTGGAAGCTAGTTAATTTTGTCATTTATTGATCTTTGTTCTTATCTGTATTTATTCTTTGTACAAAATCATTTATCTTTTTCTATTAATCAATCAGAATCTTGTAGACAGAAGTAGGGTCTAAAATAGGAAGGAAAAAAATGAAGAAAATGATCGGATAATTAATTATAAACTAAGATTCAATGTCATGAAACCGTTGGCTAAAGAAAGAATAAGTAGTATAATGCTTAAATAAGGTAAAGATTGTAAAGAAAAGATACTATATTTGGATCTCCTTTTGCAATAGATAATGTTCTTTTTCTATGAAAAGTTTTAACTTTCTCTGTTTCCTTAAAGAAGTATGCTTCTTTTCATCTTTTTAATATAACTGCTACAATTTGTGCAGAATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATG</genome_strand>
        <mrna_strand>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCTGTTCAAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTCTGGAGGAAGCAGCAGCGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTTTGCCATCTCAAGCTCCTGTTTTTTCTGATATGTTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTGTTGAGGGGCATTGGGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476388" ref_strand="+" ref_description="SGN-E476388 [cSTB-44-J11]">
      <seq>gtcaactgccgtaatgacatttgcttcctctgttcagaatcaagagttgcgggagaatccaatcacaaattctgctggagctgctacaaaacaagttctggaggaagcagcggcggtagcaagcttgactggaaactgtagcagctcttgtagtaatggaagtagtagcagcagtgtcttcggaagcttgtttgcttcatcaacagcttcgggaaattttgcatctcaaggtcctgttttttctgatatgtttcgagctatggcgcctgagcgcactcttgagatggcaccaccttcatctacagaaccaatatctctcggcctagcgatgagtcacagttcatcaatttttagaccagctggtcaagaacggaggcaatatgctcccgcaccacacccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="73581" stop="75044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73881" g_stop="73924" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73925" i_stop="74386" i_length="462">
            <donor d_prob="0.987" d_score="0.91"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74387" g_stop="74744" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="402" r_length="358" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E476388" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73881" e_stop="73924"/>
          <exon e_start="74387" e_stop="74744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAGGTACCTTCTCTGCGTTTGATGTTTGTCGCATTTGTGTTTGTTACATATCAAACAAAATAACTTTGTTGTTTCTATATCTTGGAAGCTAGTTAATTTTGTCATTTATTGATCTTTGTTCTTATCTGTATTTATTCTTTGTACAAAATCATTTATCTTTTTCTATTAATCAATCAGAATCTTGTAGACAGAAGTAGGGTCTAAAATAGGAAGGAAAAAAATGAAGAAAATGATCGGATAATTAATTATAAACTAAGATTCAATGTCATGAAACCGTTGGCTAAAGAAAGAATAAGTAGTATAATGCTTAAATAAGGTAAAGATTGTAAAGAAAAGATACTATATTTGGATCTCCTTTTGCAATAGATAATGTTCTTTTTCTATGAAAAGTTTTAACTTTCTCTGTTTCCTTAAAGAAGTATGCTTCTTTTCATCTTTTTAATATAACTGCTACAATTTGTGCAGAATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGC</genome_strand>
        <mrna_strand>GTCAACTGCCGTAATGACATTTGCTTCCTCTGTTCAGAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCGGGAGAATCCAATCACAAATTCTGCTGGAGCTGCTACAAAACAAGTTCTGGAGGAAGCAGCGGCGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAGTGTCTTCGGAAGCTTGTTTGCTTCATCAACAGCTTCGGGAAATTTTGCATCTCAAGGTCCTGTTTTTTCTGATATGTTTCGAGCTATGGCGCCTGAGCGCACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCATCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACACCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540144" ref_strand="+" ref_description="SGN-E540144 [TUS-60-E7]">
      <seq>cccactcttgacctccttggattaggaatggcagctagtgtcggtccatcgcctggattatctgcccttttaacatccatgggtagcaatcttgacatggtgacttcagctggatcatttggtagtgcagatttcagtgggaaagacttgggaagaaattcatgatatcttagagtcaggtttaatttattctgtataggacaatgaatttcacttgatgcagcaaaaaacatattggcaagctctcagccccaaagatttgagcataggatggcaggaggaaagaaggcagttggacacttttaagattgttctactgtctcctttgtgtaggaaaagtagaaaggttttttttctgctgtacagtagaagttgaatgtatagctgtattaaaactcctctgctttttgttacagatgaagctgttaatgtgtttagtatataatttgctataagcatatttaaccaagagaggctcatctagtgggaatttttatcaaatggtatctctatttcagacagtgcaaatttttataaaatttgtataattcagatgcataactaatgcagcagggttaaactctttgagcagaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="74698" stop="75893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74998" g_stop="75600" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E540144" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74998" e_stop="75600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAAAAAAGTTTAAA</genome_strand>
        <mrna_strand>CCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGGGTTAAACTCTTTGAGCAGAAAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286333" ref_strand="+" ref_description="SGN-E286333 [cLES-11-M19]">
      <seq>ccactcttgacctccttggattaggaatggcagctagtgtcggtccatcgcctggattatctgcccttttaacatccatgggtagcaatcttgacatggtgacttcagctggatcatttggtagtgcagatttcagtgggaaagacttgggaagaaattcatgatatcttagagtcaggtttaatttattctgtataggacaatgaatttcacttgatgcagcaaaaaacatattggcaagctctcagccccaaagatttgagcataggatggcaggaggaaagaaggcagttggacacttttaagattgttctactgtctcctttgtgtaggaaaagtagaaaggttttttttctgctgtacagtagaagttgaatgtatagctgtattaaaactcctctgctttttgttacagatgaagctgttaatgtgtttagtatataatttgctataagcatatttaaccaagagaggctcatctagtgggaatttttatcaaatggtatctctatttcagacagtgcaaatttttataaaatttgtataattcagatgcataactaatgcagcagtgttaaactctttgagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="74699" stop="75893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74999" g_stop="75600" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E286333" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74999" e_stop="75600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAAAAAAGTTTAAA</genome_strand>
        <mrna_strand>CCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540141" ref_strand="+" ref_description="SGN-E540141 [TUS-60-E7](-)">
      <seq>ctccttggattaggaatggcagctagtgtcggtccatcgcctggattatctgcctttttaacatccctgggtagcaatcttgacatggtgacttcagctggatcatttggtagtgcagatttcagtgggaaagacttgggaagaaattcatgatatcttagagtcaggtttaatttattcggtataggacaatgaatttcacttgatgcagcaaaaaacatattggcaagctctcagccccaaagatttgagcataggatggcaggaggaaagaaggcagttggacacttttaagattgttctactgtctcctttgtgtaggaaaagtagaaaggttttttttctgctgtacagtagaagttgaatgtatagctgtattaaaactcctctgctttttgttacagatgaagctgttaatgtgtttagtatataatttgctataagcatatttaaccaagagaggctcatctagtgggaatttttatcaaatggtatctctatttcagtacagtgcaaatttttataaaatttgtataattcagatgcataactaatgcagacagtgttaaactctttgagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="74710" stop="75893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75010" g_stop="75600" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E540141" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75010" e_stop="75600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAG-ACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAG-CAGTGTTAAACTCTTTGAGCAAAAAAGTTTAAA</genome_strand>
        <mrna_strand>CTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCTTTTTAACATCCCTGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCGGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGTACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGACAGTGTTAAACTCTTTGAGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711967" ref_strand="+" ref_description="SGN-E711967 [FB03CB01]">
      <seq>ccttagagaggcagagcaagcaaggagagaagaggaagaagcagaaaaaagaaggcaggaggaggaagaatcaaggagagaggagaaagcaagaagaaggcaacaggaggaagcaaggaggagagaggaggaagaagcagcaaaaaggcaacatgaggaagaagcagagagagaggcagaggaagcaagaaggatagaggaggaagaagcacaaagagaggcagaagaagcaaggagaatacaacaggaggaagaagcagagagagcaaggagaagagaagaagaagcagaaacaagaaggaaggaggaggaggaggaagaatcaaggagacaagaggaggaatcaaggaggagtgaagaagaggcagcaagagaggcagagagggaaaggcaagaggaagctgaaagacaagaagaagctaggagacgggaggaagaaacagaagagaggcatcaacaagaagaaaccgaggaagaggagccaggccaacctgaaatgaacggatattcctcaaactagcctatgagtgtgttgtgtaactagtgtactcagcaagttctcaggagctgaatagtctctacgtttttgtataatctcatgtgtgtgtacgtcttttcatttacttttgctgtcatatttatgagtttatgtaataacaccgaaacaagttttcatagatcacttttccctggcaagtctccagcaatgtagcagaaggtgttaggatgttatctggatgaaagcagttcatacatttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="80310" stop="78953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80014" g_stop="79253" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E711967" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80014" e_stop="79253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</genome_strand>
        <mrna_strand>CCTTAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713545" ref_strand="+" ref_description="SGN-E713545 [FB08DG02]">
      <seq>cggtagaagcagcaaaaaggcaacatgaggaagaagcagagagagaggcagaggaagcaagaaggatagaggaggaagaagcacaaagagaggcagaagaagcaaggagaatacaacaggaggaagaagcagagagagcaaggagaagagaagaagaagcagaaacaagaaggaaggaggaggaggaggaagaatcaaggagacaagaggaggaatcaaggaggagtgaagaagaggcagcaagagaggcagagagggaaaggcaagaggaagctgaaagacaagaagaagctaggagacgggaggaagaaacagaagagaggcatcaacaagaagaaaccgaggaagaggagccaggccaacctgaaatgaacggatattcctcaaactagcctatgagtgtgttgtgtaactagtgtactcagcaagttctcaggagctgaatagtctctacgtttttgtataatctcatgtgtgtgtacgtcttttcatttacttttgctgtcatatttatgagtttatgtaataacaccgaaacaagttttcatannaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="80185" stop="79038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79886" g_stop="79337" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="565"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E713545" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79886" e_stop="79337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAG</genome_strand>
        <mrna_strand>CGGTAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740792" ref_strand="+" ref_description="SGN-E740792 [LC22DF04]">
      <seq>caattctctccttttttcagagaaatgaaagtgcccttttccactaatgataacgtaagttctaaacaattggttaacagcaacaacagctttacttttccagccgctaccaacggttctaatttgtgctacgaacctaagtcagtgctcgagctccgtcgtagcccaagtcctatagttgataagcagattataacaacgaatcctgatttgtctgctctttgtggtggtgaagatcctcttcaattaggagatcatgttctgagtaactttgaagattgggattctttgatgagagaacttggcttgcacgacgattctgcttcgctttcaaaaacgaatcctctcacccacagcgaatcgctgactcagttccataatctctccgagttttcagctgaatcgaatcagtttcctagtcctgatttttctttctcagacactaatttccctcagcagtttccgacggtgaatcaggcaagtttcatcaacgcccttgatctctccggggatatccaccagaattggagcgtaggatttgattatgtggatgaactcattcgttttgctgagtgtttcgaaacaaacgctttccaactcgcacatgtgatactggcacgcctcaatcaacggctcagatccgcagcaggaaaacctctccaacgagctgccttttacttcaaggaagcacttcaagcgcagctcgccggatcagctcggcaaactcgttcttcaagttcctccgacgtaattcaaacgattaaatcttataaaatattgtcaaatatttctccgatccctatgttctctagcttcacggcgaatcaagccgtgcttgaggcagttgacggctccatgctagtccacgtcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="90659" stop="92132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90959" g_stop="91832" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E740792" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90959" e_stop="91832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAGCCATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCG</genome_strand>
        <mrna_strand>CAATTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAACAATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAAGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739290" ref_strand="+" ref_description="SGN-E739290 [LC16DD06]">
      <seq>catttctctccttttttcagagaaatgaaagtgcccttttccactaatgataacgtaagttctaagccattggttaacagcaacaacagctttacttttccagccgctaccaacggttctaatttgtgctacgaacctaagtcagtgctcgagctccgtcgtagcccaagtcctatagttgataagcagattataacaacgaatcctgatttgtctgctctttgtggtggtgaagatcctcttcaattaggagatcatgttctgagtaactttgaagattgggattctttgatgagagaacttggcttgcacgacgattctgcttcgctttcaaaaacgaatcctctcacccacagcgaatcgctgactcagttccataatctctccgagttttcagctgaatcgaatcagtttcctagtcctgatttttctttctcagacactaatttccctcagcagtttccgacggtgaatcaggcaagtttcatcaacgcccttgatctctccggggatatccaccagaattggagcgtaggatttgattatgtggatgaactcattcgttttgctgagtgtttcgaaacaaacgctttccaactcgcacatgtgatactggcacgcctcaatcaacggctcagatccgcagcaggaaaacctctccaacgagctgccttttacttcaaggaagcacttcaagcgcagctcgccggatcagctcggcaaactcgttcttcaagttcctccgacgtaattcaaacgattaaatcttataaaatattgtcaaatatttctccgatccctatgttctctagcttcacggcgaatcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="90659" stop="92088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90959" g_stop="91788" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E739290" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90959" e_stop="91788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAGCCATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGC</genome_strand>
        <mrna_strand>CATTTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAGCCATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391651" ref_strand="+" ref_description="SGN-E391651 [TUS-24-K19]">
      <seq>tttttctttctcacacactaatttccctcagcagtttccgacggtgaatcaggcaagtttcatcaacgcccttgatctctccggggatatccaccagaattggagcgtaggatttgattatgtggatgaactcattcgttttgctgagtgtttcgaaacaaacgctttccaactcgcacatgtgatactggcgcgcctcaatcaacggctcagatccgcagcaggaaaacctctccaacgagctgccttttacttcaaggaagcacttcaagcgcagctcgccggatcagctcggcaaactcgttcttctagttcctccgacgtaattcatacgattaaatcttataaaatattgtcaaatatttctccgatccctatgttctctagcttcacggcgaatcaagccgtgcttgaggcagttgaggggggggggggggggtccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="91084" stop="92109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91384" g_stop="91808" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E391651" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91384" e_stop="91808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACG</genome_strand>
        <mrna_strand>TTTTTCTTTCTCACACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCGCGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCTAGTTCCTCCGACGTAATTCATACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAAGCCGTGCTTGAGGCAGTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246758" ref_strand="+" ref_description="SGN-E246758 [cLEF-45-D14]">
      <seq>ttttctttctcagacactaatttccctcagcagtttccgacggtgaatcaggcaagtttcatcaacgcccttgatctctccggggatatccaccagaattggagcgtaggatttgattatgtggatgaactcattcgttttgctgagtgtttcgaaacaaacgctttccaactcgcacatgtgatactggcacgcctcaatcaacggctcagatccgcagcaggaaaacctctccaacgagctgccttttacttcaaggaagcacttcaagcgcagctcgccggatcagctcggcaaactcgttcttcaagttcctccgacgtaattcaaacgattaaatcttataaaatattgtcaaatatttctccgatccctatgttctctagcttcacggcgaatcaggccgtgcttgaggcagttgacggctccatgctagtccacgtcatcgatttcgacatcggacttggtggtcactgggcttacttcatgaaagagttagccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="91085" stop="92187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91385" g_stop="91887" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E246758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91385" e_stop="91887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTCCTTCATGAAAGAGTTAGCCGA</genome_strand>
        <mrna_strand>TTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTACTTCATGAAAGAGTTAGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595323" ref_strand="+" ref_description="SGN-E595323 [38593]">
      <seq>ctcaaatatttctccgatccctatgttctctagcttcacggcgaatcaggccgtgcttgaggcagttgacggctcgatgctagtccacgtcatcgatttcgacatcggacttggtggtcactgggcttccttcatgaaagagttagccgattgccgtaaagccaacgcgccggttcttcgaattacggctctagttcctgaagaatacgctgtggaatcaaggttaattagagaaaatttaacccaatttgctcgtgaactcaatatcggttttgaaattgattttgttctaattcgcacattcgaattgttatccttcaaagcgataaagttcatggagggagagaagacagcggtgcttttatctcccgctatcttccgacgggtcgggtcagggtttgttaacgacctccgtcgtatatcccctaacgtggtggtacacgtggacagcgaaggacttatgggttacggtgcgatgtctttccggcagacagtgatcgacgggctggaattttactctacactactggaatcactggaggcagcaaatatcggtggtggaaattgcggggattggatgaggaaaatagagaatttcgtgctgttccctaagatagttgatatgatcggagcagtagggcggcgtggaggttggaggatcgtggaaggatgcgatgatgggtgccggattccggccggtgggattaagccagtttgcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="91439" stop="92767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91738" g_stop="92467" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E595323" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91738" e_stop="92467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTCCTTCATGAAAGAGTTAGCCGACAAAGCCGAGTGCCGTAAAGCCAACGCGCCGATCCTTAGAATTACGGCTCTAGTTCCTGAAGAGTACGCTGTGGAATCAAGGTTAATTAGAGAAAATTTAACCCAATTTGCTCGTGAACTCAATATCGGTTTCGAAATTGATTTTGTCCTAATTCGTACATTCGAATTGTTATCCTTCAAAGCGATAAAGTTCATGGAGGGAGAGAAGACAGCGGTGCTTTTATCTCCCGCTATCTTCCGACGGGTCGGGTCAGGGTTTGTAAATGAACTCCGTCGAATATCCCCTAACGTGGTGGTACACGTGGACAGCGAAGGACTTATGGGTTACGGTGCAATGTCTTTCCGGCAGACAGTAATCGACGGGCTGGAATTTTACTCTACACTACTGGAATCACTGGAGGCAGCAAATATCGGTGGTGGAAATTGCGGGGATTGGATGAGAAAAATAGAGAATTTCGTGCTGTTTCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGG-TGGAGGATCGTGGAGGGATGCCATGGTGGATGCCGGATTCCGGCCGGTTGGACTAAGCCAGTTTGCCGAT</genome_strand>
        <mrna_strand>CTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCGATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTCCTTCATGAAAGAGTT---------AGCCGATTGCCGTAAAGCCAACGCGCCGGTTCTTCGAATTACGGCTCTAGTTCCTGAAGAATACGCTGTGGAATCAAGGTTAATTAGAGAAAATTTAACCCAATTTGCTCGTGAACTCAATATCGGTTTTGAAATTGATTTTGTTCTAATTCGCACATTCGAATTGTTATCCTTCAAAGCGATAAAGTTCATGGAGGGAGAGAAGACAGCGGTGCTTTTATCTCCCGCTATCTTCCGACGGGTCGGGTCAGGGTTTGTTAACGACCTCCGTCGTATATCCCCTAACGTGGTGGTACACGTGGACAGCGAAGGACTTATGGGTTACGGTGCGATGTCTTTCCGGCAGACAGTGATCGACGGGCTGGAATTTTACTCTACACTACTGGAATCACTGGAGGCAGCAAATATCGGTGGTGGAAATTGCGGGGATTGGATGAGGAAAATAGAGAATTTCGTGCTGTTCCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGGTTGGAGGATCGTGGAAGGATGCGATGATGGGTGCCGGATTCCGGCCGGTGGGATTAAGCCAGTTTGCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409999" ref_strand="+" ref_description="SGN-E409999 [PPI-15-B12]">
      <seq>cggggattggatgaggaaaatagagaacttcgtgctgttccctaagatagttgatgtgatcggagcagtagggcggcgtggaggtggaggatcgtggaaggatgcgatgatgggtgccggatttcggccggtgggattaagccagtttgcggattttcaagcagattgtttattgggtagggtacaggtaagaggattccacgtggcaaagagacaagcagagatgttgctttgctggcatgatagggccctagtagccacgtcagcttggaggtgttaataataataataataaaactaaccctaaactatagttttaatttaataatagcagtgatttggatctttagctgtatggtttcagttttaggggttgggtttagcatatataacaatagattaagaaaaaaaaaactcaaaagaaagttgcatggtctttttttttctttatccaattgtattggtaactatctatcttttgtaattttgtagcttaatttggagtctttaaggttgatgtctctaattagtggataattgcaatttgtaactcattcactatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="92014" stop="93179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92314" g_stop="92879" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E409999" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92314" e_stop="92879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGATTGGATGAGAAAAATAGAGAATTTCGTGCTGTTTCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGGTGGAGGATCGTGGAGGGATGCCATGGTGGATGCCGGATTCCGGCCGGTTGGACTAAGCCAGTTTGCCGATTTTCAAGCAGATTGTTTATTGGGTAGGGTACAGGTAAGAGGATTCCACGTGGCAAAGAGACAAGCAGAGATGTTGCTTTGCTGGCATGACAGGGCCCTAGTAGCCACGTCAGCTTGGAGGTGTTAATAATAAT-A-AAT----CTAACCCTAAAC--TAGTTTTAATTTAATAATAGCAGTGATTTGGATCTTTAGCTGTATGG-TTCAGTTTTAGGGGTT-GGCTTAGCATATATAACAATAGATTAAGAAGAAGAAAAAAAGAAAAAACTCAAAAGAAAGTTGCATGGTCCTTTTCTTTTCTTTCTCCAATTGTGTTGGTAACTATCTATCTTTTGTAATTTTGTAGCTTAATTTGGAGTC-TCAAGGTTGGTGTCTCTAATTAGTGGATAATTGCAATTTGTAACTCATTCACTATTTAA</genome_strand>
        <mrna_strand>CGGGGATTGGATGAGGAAAATAGAGAACTTCGTGCTGTTCCCTAAGATAGTTGATGTGATCGGAGCAGTAGGGCGGCGTGGAGGTGGAGGATCGTGGAAGGATGCGATGATGGGTGCCGGATTTCGGCCGGTGGGATTAAGCCAGTTTGCGGATTTTCAAGCAGATTGTTTATTGGGTAGGGTACAGGTAAGAGGATTCCACGTGGCAAAGAGACAAGCAGAGATGTTGCTTTGCTGGCATGATAGGGCCCTAGTAGCCACGTCAGCTTGGAGGTGTTAATAATAATAATAATAAAACTAACCCTAAACTATAGTTTTAATTTAATAATAGCAGTGATTTGGATCTTTAGCTGTATGGTTTCAGTTTTAGGGGTTGGGTTTAGCATATATAACAATAGATT------AAG---AAAA-AAAAAACTCAAAAGAAAGTTGCATGGT-CTTTTTTTTTCTTTATCCAATTGTATTGGTAACTATCTATCTTTTGTAATTTTGTAGCTTAATTTGGAGTCTTTAAGGTTGATGTCTCTAATTAGTGGATAATTGCAATTTGTAACTCATTCACTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434467" ref_strand="-" ref_description="SGN-E434467 [STM-60-A3]">
      <seq>gggattggatgaggaaaatagagaatttcgtgctgttccctaagatagttgatgtgatcggagcattagggcggcgtggaggtggaggatcgtggaaggatgcgatgatgggtgccggatttcggccggtgggattaagccagtttgcggattttcaagcagattgtttattgggtagggtacaggtaagaggattccacgtggcaaagagacaagcagagatgttgctttgctggcatgatagggccctagtagccacgtcagcttggaggtgttaataataataataataaaactaaccctaaactatagttttaatttaataatagcagtgatttggatctttagctgtatggtttcagttttaggggttgggtttagcatatataacaatagattaagaaaaaaaaaactcaaaagaaagttgcatggtctttttttttctttatccaattgtattggtaactatctatcttttgtaattttgtagcttaatttggagtctttaaggttgatgtctctaattagtggataattgcaatttgtaactcattcactatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcgagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="+" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="92016" stop="93179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92316" g_stop="92878" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="597"/>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="+" ref_id="SGN-E434467" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434467" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92316" e_stop="92878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGGATGAGAAAAATAGAGAATTTCGTGCTGTTTCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGGTGGAGGATCGTGGAGGGATGCCATGGTGGATGCCGGATTCCGGCCGGTTGGACTAAGCCAGTTTGCCGATTTTCAAGCAGATTGTTTATTGGGTAGGGTACAGGTAAGAGGATTCCACGTGGCAAAGAGACAAGCAGAGATGTTGCTTTGCTGGCATGACAGGGCCCTAGTAGCCACGTCAGCTTGGAGGTGTTAATAATAAT-A-AAT----CTAACCCTAAAC--TAGTTTTAATTTAATAATAGCAGTGATTTGGATCTTTAGCTGTATGG-TTCAGTTTTAGGGGTTGG-CTTAGCATATATAACAATAGATTAAGAAGAAGAAAAAAAGAAAAAACTCAAAAGAAAGTTGCATGGTCCTTTTCTTTTCTTTCTCCAATTGTGTTGGTAACTATCTATCTTTTGTAATTTTGTAGCTTAATTTGGAGTC-TCAAGGTTGGTGTCTCTAATTAGTGGATAATTGCAATTTGTAACTCATTCACTATTTA</genome_strand>
        <mrna_strand>GGGATTGGATGAGGAAAATAGAGAATTTCGTGCTGTTCCCTAAGATAGTTGATGTGATCGGAGCATTAGGGCGGCGTGGAGGTGGAGGATCGTGGAAGGATGCGATGATGGGTGCCGGATTTCGGCCGGTGGGATTAAGCCAGTTTGCGGATTTTCAAGCAGATTGTTTATTGGGTAGGGTACAGGTAAGAGGATTCCACGTGGCAAAGAGACAAGCAGAGATGTTGCTTTGCTGGCATGATAGGGCCCTAGTAGCCACGTCAGCTTGGAGGTGTTAATAATAATAATAATAAAACTAACCCTAAACTATAGTTTTAATTTAATAATAGCAGTGATTTGGATCTTTAGCTGTATGGTTTCAGTTTTAGGGGTTGGGTTTAGCATATATAACAATAGATT------AAG---AAAA-AAAAAACTCAAAAGAAAGTTGCATGGT-CTTTTTTTTTCTTTATCCAATTGTATTGGTAACTATCTATCTTTTGTAATTTTGTAGCTTAATTTGGAGTCTTTAAGGTTGATGTCTCTAATTAGTGGATAATTGCAATTTGTAACTCATTCACTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745233" ref_strand="+" ref_description="SGN-E745233 [GI|456752]">
      <seq>atgcctccttatgggactccagttccatatccagctttatatcctcctgccggagtttatgctcatcctaacattgccacgccggctccaaattctgtgccggcaaatcctgaagcagatgggaaggggcctgaaggaaaggatcggaattcaagtaaaaagttaaaggtctgttctggtggtaaggcaggcgacaatgggaaagttacttcaggttccggaaatgatggtgccacacaaagtgatgaaagcagaagtgaaggtacatcagatacaaatgatgaaaatgataacaatgaatttgctgcaaacaagaagggaagctttgatcaaatgcttcgagatggagccagtgcacagaataatcctgcgaaagagaatcacccgacttctatacatggaatctgtaccatgcctgcaactaacctaaatattggaatggacgtgtggaatgcatcagctgccggtcctggagcgatcaaaatacagcaaaatgcaactggtccagttataggacatgaaggaaggatgaatgatcagtggattcaggaggaacgtgaacttaaaaggcaaaagagaaagcaatctaatagggagtcagctaggaggtcgaggctccgcaagcaggcagagtgtgaagagctacaacgtagagtagaagctttgagccatgagaatcattcactcaaagatgagctccaacggctctctgaggaatgtgagaagcttacctcggagaataatttaattaaggaagagttaacgctactttgtggaccagacgttgtgtctaagctggagagaaacgataatgtcacacgtattcaatctaatgttgaagaagctagttaaggagaagtggaaaagccaggactgagtaggtgatttttggttacaaagtgctcacagatcattgcctttttggttacaaagtgctcacagatcattgcctttttggtgcagtgtttgttgtcctactaacctataccctcctttaactcccttctgagtatgactgtaacatatatttcttatgattctaaccccagtgttaaaagagtcttgagtctgtttaacttagtctttaaattaacttcagtagctcagaaagtcttcaagtgaatgttaacgaggcacccaaccacatgggttgtggtaccctggtggaattgctttagctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="98655" stop="92859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98355" g_stop="98275" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98274" i_stop="98148" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98147" g_stop="97987" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="242" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97986" i_stop="97903" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97902" g_stop="97848" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="297" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97847" i_stop="97715" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97714" g_stop="97666" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97665" i_stop="97584" i_length="82">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97583" g_stop="97378" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="549" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97377" i_stop="96568" i_length="810">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96567" g_stop="96490" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="627" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96489" i_stop="93970" i_length="2520">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93969" g_stop="93844" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="753" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93843" i_stop="93562" i_length="282">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93561" g_stop="93155" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="1193" r_length="440" r_score="0.813"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E745233" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>1163</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98355" e_stop="98275"/>
          <exon e_start="98147" e_stop="97987"/>
          <exon e_start="97902" e_stop="97848"/>
          <exon e_start="97714" e_stop="97666"/>
          <exon e_start="97583" e_stop="97378"/>
          <exon e_start="96567" e_stop="96490"/>
          <exon e_start="93969" e_stop="93844"/>
          <exon e_start="93561" e_stop="93155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTCCTTATGGGACTCCAGTTCCATATCCAGCTTTATATCCTCCTGCCGGAGTTTATGCTCATCCTAACATTGCCACGGTAATCAAGCTTATCTGTAATTTATTCTTATGAATTTGAAAGCTGATGAAAGCAAGTTACCTCTTCTTCCCAAAAGAAAAAATACAAAAAGACAGATCATGCTAATATTTTGTTCACGTATTTTCAGCCGGCTCCAAATTCTGTGCCGGCAAATCCTGAAGCAGATGGGAAGGGGCCTGAAGGAAAGGATCGGAATTCAAGTAAAAAGTTAAAGGTCTGTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAGGTCTGATTATGAATCATATTTCTGCAAAAATTCTTCATTATGGATCATTCATGCATCTGATTGTTTTATTTTTTTCGTGAACAGTGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAATGTAAGTATTCAGTCCGCCCCTGACCACTTCTTTCTTTGTTTACATGCCATGGAGATCATGAGTTTCAATTTTATCCTTACCTTGTCCCGCAATGGCTAGTTGGAACTTTTTTTGATCATATGCCATCTCACAGGAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATGGTAACTTCTGTGAGCTCTCTTCTTGATTCTGCCATTATTATTATCAACAAATAATTGAGTTTCTAACTATGGTGATTATCAGGAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAGGTACTTTTTCTTTTCTTTAGCTCTTCACTCACTGAAATCAGTACTGTCGTTGTCGTTCTTAACCAGATTTGTATATCCTTCAAATTCGCCAGTCTACCTGCTTATCGATCTTTTAAAAAGCATGCATATTCCACACATCTAGTAGCAGATGGTATTAGTGAAGGTGGAATATTTTCTGATTACACAAAGTTGTCTGTGTATCTTGATTCTTAGCACAGAGACTTCCATATTAGTGTGCAAATGAAATGGCTGAAATGACTAATTTGTGAACGAAGATCACAACCTGGAGAAAGTCATGAAAGCATCCAACACCCTGATTTTATAAGGCTTCAGATGTTTTGGTTAGTCCAAAAATAGCCTAGACTAGTAATACGCCAGAAAACTCCTGAAGAGTGAAGACATGTCAGTTTCGTTCTTTATGGGATAAAATAACCTGTTTGTAGGATACAATTTTCTAATCTAATTTATTGCCATAACAATTTCTGAACATATGGTTCATTAGTTATTAAACATGCTTCATCTTGATATTTCCATCTCTGGGTACATCAGCACCTTGTGCTGTTTTGAAGTTCATTGTTCTACTTCACGACATACCCTATCACTACATAAAAGTTACATTCATGATTATTTCAAGTAGATCAATAAATTATGTAACACTCGAGAGAGGAGAGACAACTTTTTACATCCCACATCCCTTTCATTTTTGTGTGCAAGAGGGAGTACACACTCAATGATGGCGTTATATCCTTGTCATCATCGTTTTTCCGTTTCATTTTGTTGATAAATTTCGTTATAACCCTCCCGTAACAGGAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCGAGGCTCCGCAAGCAGGTATGACTTAACTTTTAATAGATAATGTTACTCTTTCCATCTTTAACCAGTTAGAGTTGACTGTATGTCTTTTATTGTTAGTTCTCTTTGTGGATTTAGACTAGGGGTGGCAAATGGGAGATTCGAGCTAAATTTGGGCGGGGTTGGGCAATGCCCAACTTGTCTTTTACCTACATTTATTAGCTTATAAATTTAATAGTAATAATTCTATTTTTCTTTATAAGCAAAATAGTTGTTTTAATTTCTCCATTTTGATTGATTAACATTAGAACTTCACTGATTTCATTATTTTTTTCCTTTGTAGCTTTCACATTTAATTAGTCCAGTAATTACTTGCAGAAAAAATTGCACGAAAATTAGAACCACTCAAAAACTACATGGTTTTACTTAATTGAGAAATCTGCAGATTACTTTCAATGAATTCATCAGAAAATTTGACAATGACTTTAGTACTTCATACAAAAAATTAAAGATGACTTTCTGTTACTTCGACCGAGAAGTTTGATAATGACGACATGTATTAGATATGCTAAAGATTGTTAACTATTGAATAGATGAATTTTATTCCAGAAGGGCTCCAACTTTTTTATATTTTTATCTCTGTCTTTGTGATTTTCTAATTATTTTCTAGTTAGGTTTTTTGGGTCAATTTTGCCAACCCTAGTTCAGACTCAGACATTTGCTTGAGGCAGAGAGAGCCTTAAAATCATCCTTTTTACGCCATCATATGGCACATTGATCTTTTTGCATTGTCGTCTAGCCAGATAAACTTACATTGATGCTGCAAGTTCTTGTTTCATCCGAATCCTCAATGTCTTGTGATGATGTTTTTTCTAGTTGATGGGAACACATTTGTATCACGTTTATGAAATGGTCTCCAGCATAAATTATAAGCACCTAAGAATATGGGAATACAATTCGATGTTATATCTACATATCACATGCTCTAATCTGCAGACTGTTTTACGGCCCTAGCAACTATAACTTACTTTCTTAGTTTTTTCCTTTTCTTGCGCACCCCCCCCCCCACCCCAACAAGATCATGTGTCTCTCTTCATATTTCGATTTGTGAAGACAATGGACAATCACATGAGAGAAAAATTCGAGTTGGGGAACACAAATGAACGGATGGTATGTATAAAAATTGGAATATAATGTGAAAAAGCGACAGCAGATGCATTCATATCAAATATCAACTAAAACAGACCACTTATAGATAGTCTCCCTTAAACCACTATCTTCCTGAAGGCTGATAACCTGTTCTCAAAAGTAAGTCTATCCTAGCTATCTCCCAATCCTTTCCAAAGAGAATCTTATATCAAGTCCTAGTATAGCCTCTTTTATGGACCATTAATCAATAACATCCCAAGAATCAAGATGCTGTTACTTTACTTGAAAGTACCAACATTACATTCTTACAAGTTCTGAGTACTGAAAAACAATATGCAGCTTTATGTTTGCGGTTTTCCTCTCACCTTATAGATTTAATTGTTAATTAAAACTACTGATCCCTTCTGATGTGAAACTGTTTCCTTATGTTCCTAGCCAAACCATACTGTGTAAACGTAGGGAGTAAAAAGTATCATTTTGAGAGACATGGTTGGGCAAGTGCAGCCACTGATGTCGAATATACCCTCCTCTAACTGTCAGTTAAGATCTTGAAAACACCTTTATCCATCCTGAGTTTGATGGGTTTAACTGAATAGGAAATGGATAGACGCGTAAATACCATTATAACTTCTCATGGAATGGGGGGATTAATGCGTAACTTAGATGTATCCAACCAAAAGGATTAAGGAGAAAAATATAAGTGCAATAAGAATGCTCCTCACATCTTTACCACTATCAGTTCACCCAGATGTAGTCAGCTCTACTGTTTTCTCCTAATGATAGTTATTTGTTAAAATTAAATTGGAACAGGAAGTGATGGTAAGTGTCATCAAATTAATGCCAAGAAACCAAGGAAATAGCTGCTTTTCATTTTAGTGGAGACGCGGAAAAAGAAAGAACAGAAATCTTGGTTTGGTTCTTATTTGCCGTAGTTAAACAAACAGATTATGCTGTGAACGGATAAGTTATTATCCATTATTTGGGACCGAGGGAGAATATTCACCTACATTCGGTGTATACACTGAGACTGGTAGATTAGTGGATGATTGGAACCATTGTGAGAGTGTCACTTTCACTATAAGATAGGACAGAAATTTGTCCATGGAGTTCATCGTTGTGCATGTGGATGTTTTCTGTCATTGTATTTGACATCTCTTTAGAAAGAAGTAACAACGTGTGTTTGTAACATTTCTACCATTAGCCCATACAAAAACATGATATTCCTTTCTGTTCATGTTACAACAGCAACTAGCATTTCGATGAGACAGCAAACAAGCTGCTTTTAACTCTTGACCATTGTTCATGTGTGTTTGGTCGTTTGCTTGCACCAATTGCTGGAGAACCCAGAATGTGCTCTAAATTTCTTTTAGATCTTCTGACAGTAATGTATTACGTTGTGTATTTTCGCAGGCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCTTTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTTAATTAAGGTACTTTACACCTTCATAAGTATTCCTCTGAACTTTTGTCCTCCTTGATTTTTCGTTCTTCTCTTTCTCAAGTACACTGTTCTTGTCATCCCCTGTTTTCTTTCCCCTCTGTGACACTGAATAGGGGCACACAGTTCTGATTCGTGAATAGCTTTTTGTTATAACAAAAATGTGAGACCGTTTATTATCATTGAATCTCTCGCTGCATACATACATTCATCGTTTTGTGAAGGTGAGAAAAATGAAATTACTGATATTTGTTGGAATATGATGGTGAAACAGGAAGAGTTAACGCTACTTTGTGGACCAGACGTTGTGTCTAAGCTGGAGAGAAACGATAATGTCACACGTATTCAATCTAATGTTGAAGAAGCTAGTTAAGGAGAAGTGGAAAAGCCAGGAC--------TGA------G-T----AG-G-T----G---A-----TTTTT-GTTACAAAGTGCTCACAGATCATTGCCTTTTTGGTGCAGTGTTTGTTGTCCTACTAACCTATACCCTCCTTTAACTCCCTTTCTGAGTATGACTGTAACATATATTTCTTATGATTCTAACCCCAGTGTTAAAAGAGTCTTGAGTCTGTTTAACTTAGTCTTTAAATTAACTTCAGTAGCTCAGAAAGTCTTCAAGTGAATGTTAACGAGGCACCCAACCACATGGGTTGTGGTACCCTGGTGGAATTGCTTTAGCTTTAACTAGATGTC</genome_strand>
        <mrna_strand>ATGCCTCCTTATGGGACTCCAGTTCCATATCCAGCTTTATATCCTCCTGCCGGAGTTTATGCTCATCCTAACATTGCCACG...............................................................................................................................CCGGCTCCAAATTCTGTGCCGGCAAATCCTGAAGCAGATGGGAAGGGGCCTGAAGGAAAGGATCGGAATTCAAGTAAAAAGTTAAAGGTCTGTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAG....................................................................................TGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAAT.....................................................................................................................................GAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTCGAGATG..................................................................................GAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGG-AAT-CTGT-ACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCGAGGCTCCGCAAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCTTTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTTAATTAAG..........................................................................................................................................................................................................................................................................................GAAGAGTTAACGCTACTTTGTGGACCAGACGTTGTGTCTAAGCTGGAGAGAAACGATAATGTCACACGTATTCAATCTAATGTTGAAGAAGCTAGTTAAGGAGAAGTGGAAAAGCCAGGACTGAGTAGGTGATTTTTGGTTACAAAGTGCTCACAGATCATTGCCTTTTTGGTTACAAAGTGCTCACAGATCATTGCCTTTTTGGTGCAGTGTTTGTTGTCCTACTAACCTATACCCTCCTTTAACTCCC-TTCTGAGTATGACTGTAACATATATTTCTTATGATTCTAACCCCAGTGTTAAAAGAGTCTTGAGTCTGTTTAACTTAGTCTTTAAATTAACTTCAGTAGCTCAGAAAGTCTTCAAGTGAATGTTAACGAGGCACCCAACCACATGGGTTGTGGTACCCTGGTGGAATTGCTTTAGCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434905" ref_strand="+" ref_description="SGN-E434905 [STM-60-N15]">
      <seq>gttctggtggcaaggcaggcgacaatgggaaagttacttcgggttccggaaatgatggtgccacacaaagtgatgaaagcagaagtgaaggtacatcagatacaaatgatgaaaatgataacaatgaatttgctgcaaacaagaagggaagctttgatcaaatgcttgcagatggagccagtgcacagaataatcctgcaaaagagaatcacccgacttctatacatggaaatcctgtcaccgtacctgcaactaacctaaatattggaatggacgtgtggaatgcatcagctgccggtcctggagctatcaaactacagccaaatgcaactggtccagttataggacatgaaggaaggatgaatgatcagtggattcaggaggaacgtgaacttaaaaggcaaaagagaaagcaatctaatagggagtcagctaggaggtcaaggctccgcaagcaggcagagtgtgaagagctacaacgtagagtagaagcattgagccatgagaatcattcactcaaagatgagctccaacggctctctgaggaatgtgagaagcttacctcggagaataattcgataaaggaagagttaatactactttgtggaccagacgttgtgtctaagctagagaggaacgatattgccgcacgtatttcatctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="98356" stop="93179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98056" g_stop="97987" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97986" i_stop="97903" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97902" g_stop="97848" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="125" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97847" i_stop="97715" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97714" g_stop="97666" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="174" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97665" i_stop="97584" i_length="82">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97583" g_stop="97378" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="380" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97377" i_stop="96568" i_length="810">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96567" g_stop="96490" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="458" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96489" i_stop="93970" i_length="2520">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93969" g_stop="93844" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="584" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93843" i_stop="93562" i_length="282">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.769" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93561" g_stop="93479" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="667" r_length="83" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E434905" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98056" e_stop="97987"/>
          <exon e_start="97902" e_stop="97848"/>
          <exon e_start="97714" e_stop="97666"/>
          <exon e_start="97583" e_stop="97378"/>
          <exon e_start="96567" e_stop="96490"/>
          <exon e_start="93969" e_stop="93844"/>
          <exon e_start="93561" e_stop="93479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAGGTCTGATTATGAATCATATTTCTGCAAAAATTCTTCATTATGGATCATTCATGCATCTGATTGTTTTATTTTTTTCGTGAACAGTGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAATGTAAGTATTCAGTCCGCCCCTGACCACTTCTTTCTTTGTTTACATGCCATGGAGATCATGAGTTTCAATTTTATCCTTACCTTGTCCCGCAATGGCTAGTTGGAACTTTTTTTGATCATATGCCATCTCACAGGAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATGGTAACTTCTGTGAGCTCTCTTCTTGATTCTGCCATTATTATTATCAACAAATAATTGAGTTTCTAACTATGGTGATTATCAGGAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAGGTACTTTTTCTTTTCTTTAGCTCTTCACTCACTGAAATCAGTACTGTCGTTGTCGTTCTTAACCAGATTTGTATATCCTTCAAATTCGCCAGTCTACCTGCTTATCGATCTTTTAAAAAGCATGCATATTCCACACATCTAGTAGCAGATGGTATTAGTGAAGGTGGAATATTTTCTGATTACACAAAGTTGTCTGTGTATCTTGATTCTTAGCACAGAGACTTCCATATTAGTGTGCAAATGAAATGGCTGAAATGACTAATTTGTGAACGAAGATCACAACCTGGAGAAAGTCATGAAAGCATCCAACACCCTGATTTTATAAGGCTTCAGATGTTTTGGTTAGTCCAAAAATAGCCTAGACTAGTAATACGCCAGAAAACTCCTGAAGAGTGAAGACATGTCAGTTTCGTTCTTTATGGGATAAAATAACCTGTTTGTAGGATACAATTTTCTAATCTAATTTATTGCCATAACAATTTCTGAACATATGGTTCATTAGTTATTAAACATGCTTCATCTTGATATTTCCATCTCTGGGTACATCAGCACCTTGTGCTGTTTTGAAGTTCATTGTTCTACTTCACGACATACCCTATCACTACATAAAAGTTACATTCATGATTATTTCAAGTAGATCAATAAATTATGTAACACTCGAGAGAGGAGAGACAACTTTTTACATCCCACATCCCTTTCATTTTTGTGTGCAAGAGGGAGTACACACTCAATGATGGCGTTATATCCTTGTCATCATCGTTTTTCCGTTTCATTTTGTTGATAAATTTCGTTATAACCCTCCCGTAACAGGAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCGAGGCTCCGCAAGCAGGTATGACTTAACTTTTAATAGATAATGTTACTCTTTCCATCTTTAACCAGTTAGAGTTGACTGTATGTCTTTTATTGTTAGTTCTCTTTGTGGATTTAGACTAGGGGTGGCAAATGGGAGATTCGAGCTAAATTTGGGCGGGGTTGGGCAATGCCCAACTTGTCTTTTACCTACATTTATTAGCTTATAAATTTAATAGTAATAATTCTATTTTTCTTTATAAGCAAAATAGTTGTTTTAATTTCTCCATTTTGATTGATTAACATTAGAACTTCACTGATTTCATTATTTTTTTCCTTTGTAGCTTTCACATTTAATTAGTCCAGTAATTACTTGCAGAAAAAATTGCACGAAAATTAGAACCACTCAAAAACTACATGGTTTTACTTAATTGAGAAATCTGCAGATTACTTTCAATGAATTCATCAGAAAATTTGACAATGACTTTAGTACTTCATACAAAAAATTAAAGATGACTTTCTGTTACTTCGACCGAGAAGTTTGATAATGACGACATGTATTAGATATGCTAAAGATTGTTAACTATTGAATAGATGAATTTTATTCCAGAAGGGCTCCAACTTTTTTATATTTTTATCTCTGTCTTTGTGATTTTCTAATTATTTTCTAGTTAGGTTTTTTGGGTCAATTTTGCCAACCCTAGTTCAGACTCAGACATTTGCTTGAGGCAGAGAGAGCCTTAAAATCATCCTTTTTACGCCATCATATGGCACATTGATCTTTTTGCATTGTCGTCTAGCCAGATAAACTTACATTGATGCTGCAAGTTCTTGTTTCATCCGAATCCTCAATGTCTTGTGATGATGTTTTTTCTAGTTGATGGGAACACATTTGTATCACGTTTATGAAATGGTCTCCAGCATAAATTATAAGCACCTAAGAATATGGGAATACAATTCGATGTTATATCTACATATCACATGCTCTAATCTGCAGACTGTTTTACGGCCCTAGCAACTATAACTTACTTTCTTAGTTTTTTCCTTTTCTTGCGCACCCCCCCCCCCACCCCAACAAGATCATGTGTCTCTCTTCATATTTCGATTTGTGAAGACAATGGACAATCACATGAGAGAAAAATTCGAGTTGGGGAACACAAATGAACGGATGGTATGTATAAAAATTGGAATATAATGTGAAAAAGCGACAGCAGATGCATTCATATCAAATATCAACTAAAACAGACCACTTATAGATAGTCTCCCTTAAACCACTATCTTCCTGAAGGCTGATAACCTGTTCTCAAAAGTAAGTCTATCCTAGCTATCTCCCAATCCTTTCCAAAGAGAATCTTATATCAAGTCCTAGTATAGCCTCTTTTATGGACCATTAATCAATAACATCCCAAGAATCAAGATGCTGTTACTTTACTTGAAAGTACCAACATTACATTCTTACAAGTTCTGAGTACTGAAAAACAATATGCAGCTTTATGTTTGCGGTTTTCCTCTCACCTTATAGATTTAATTGTTAATTAAAACTACTGATCCCTTCTGATGTGAAACTGTTTCCTTATGTTCCTAGCCAAACCATACTGTGTAAACGTAGGGAGTAAAAAGTATCATTTTGAGAGACATGGTTGGGCAAGTGCAGCCACTGATGTCGAATATACCCTCCTCTAACTGTCAGTTAAGATCTTGAAAACACCTTTATCCATCCTGAGTTTGATGGGTTTAACTGAATAGGAAATGGATAGACGCGTAAATACCATTATAACTTCTCATGGAATGGGGGGATTAATGCGTAACTTAGATGTATCCAACCAAAAGGATTAAGGAGAAAAATATAAGTGCAATAAGAATGCTCCTCACATCTTTACCACTATCAGTTCACCCAGATGTAGTCAGCTCTACTGTTTTCTCCTAATGATAGTTATTTGTTAAAATTAAATTGGAACAGGAAGTGATGGTAAGTGTCATCAAATTAATGCCAAGAAACCAAGGAAATAGCTGCTTTTCATTTTAGTGGAGACGCGGAAAAAGAAAGAACAGAAATCTTGGTTTGGTTCTTATTTGCCGTAGTTAAACAAACAGATTATGCTGTGAACGGATAAGTTATTATCCATTATTTGGGACCGAGGGAGAATATTCACCTACATTCGGTGTATACACTGAGACTGGTAGATTAGTGGATGATTGGAACCATTGTGAGAGTGTCACTTTCACTATAAGATAGGACAGAAATTTGTCCATGGAGTTCATCGTTGTGCATGTGGATGTTTTCTGTCATTGTATTTGACATCTCTTTAGAAAGAAGTAACAACGTGTGTTTGTAACATTTCTACCATTAGCCCATACAAAAACATGATATTCCTTTCTGTTCATGTTACAACAGCAACTAGCATTTCGATGAGACAGCAAACAAGCTGCTTTTAACTCTTGACCATTGTTCATGTGTGTTTGGTCGTTTGCTTGCACCAATTGCTGGAGAACCCAGAATGTGCTCTAAATTTCTTTTAGATCTTCTGACAGTAATGTATTACGTTGTGTATTTTCGCAGGCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCTTTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTTAATTAAGGTACTTTACACCTTCATAAGTATTCCTCTGAACTTTTGTCCTCCTTGATTTTTCGTTCTTCTCTTTCTCAAGTACACTGTTCTTGTCATCCCCTGTTTTCTTTCCCCTCTGTGACACTGAATAGGGGCACACAGTTCTGATTCGTGAATAGCTTTTTGTTATAACAAAAATGTGAGACCGTTTATTATCATTGAATCTCTCGCTGCATACATACATTCATCGTTTTGTGAAGGTGAGAAAAATGAAATTACTGATATTTGTTGGAATATGATGGTGAAACAGGAAGAGTTAACGCTACTTTGTGGACCAGACGTTGTGTCTAAGCTGGAGAGAAACGATAATGTCACACGTATTCAATCTAATGT</genome_strand>
        <mrna_strand>GTTCTGGTGGCAAGGCAGGCGACAATGGGAAAGTTACTTCGGGTTCCGGAAATGATGGTGCCACACAAAG....................................................................................TGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAAT.....................................................................................................................................GAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATG..................................................................................GAGCCAGTGCACAGAATAATCCTGCAAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCGTACCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCTATCAAACTACAGCCAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCAAGGCTCCGCAAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCATTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTCGATAAAG..........................................................................................................................................................................................................................................................................................GAAGAGTTAATACTACTTTGTGGACCAGACGTTGTGTCTAAGCTAGAGAGGAACGATATTGCCGCACGTATTTCATCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409445" ref_strand="+" ref_description="SGN-E409445 [PPI-14-I3]">
      <seq>gttctggtggcaaggcaggcgacaatgggaaagttacttcgggttccggaaatgatggtgccacacaaagtgatgaaagcagaagtgaaggtacatcagatacaaatgatgaaaatgataacaatgaatttgctgcaaacaagaagggaagctttgatcaaatgcttgcagatggagccagtgcacagaataatcctgcaaaagagaatcacccgacttctatacatggaaatcctgtcaccgtacctgcaactaacctaaatattggaatggacgtgtggaatgcatcagctgccggtcctggagctatcaaactacagccaaatgcaactggtccagttataggacatgaaggaaggatgaatgatcagtggattcaggaagaacgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="98356" stop="97075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98056" g_stop="97987" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97986" i_stop="97903" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97902" g_stop="97848" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="125" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97847" i_stop="97715" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97714" g_stop="97666" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="174" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97665" i_stop="97584" i_length="82">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97583" g_stop="97378" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="380" r_length="206" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E409445" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98056" e_stop="97987"/>
          <exon e_start="97902" e_stop="97848"/>
          <exon e_start="97714" e_stop="97666"/>
          <exon e_start="97583" e_stop="97378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAGGTCTGATTATGAATCATATTTCTGCAAAAATTCTTCATTATGGATCATTCATGCATCTGATTGTTTTATTTTTTTCGTGAACAGTGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAATGTAAGTATTCAGTCCGCCCCTGACCACTTCTTTCTTTGTTTACATGCCATGGAGATCATGAGTTTCAATTTTATCCTTACCTTGTCCCGCAATGGCTAGTTGGAACTTTTTTTGATCATATGCCATCTCACAGGAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATGGTAACTTCTGTGAGCTCTCTTCTTGATTCTGCCATTATTATTATCAACAAATAATTGAGTTTCTAACTATGGTGATTATCAGGAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG</genome_strand>
        <mrna_strand>GTTCTGGTGGCAAGGCAGGCGACAATGGGAAAGTTACTTCGGGTTCCGGAAATGATGGTGCCACACAAAG....................................................................................TGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAAT.....................................................................................................................................GAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATG..................................................................................GAGCCAGTGCACAGAATAATCCTGCAAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCGTACCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCTATCAAACTACAGCCAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355615" ref_strand="+" ref_description="SGN-E355615 [cLHT-1-I8]">
      <seq>ctgttttctttatggctgctctttgtttaggataatttttttcttcttaaatctctttgggggtgggataaaaaacttaactttttggaaaatccgacttggaaccttcttgttccacctcagattcagtacacagcctttcgctgagcaagccatttttggtttattcccgtggatacctgcatatacaattgattgacccaatgggagctggggaagagagcactcctacaaagacttcaaagcctcctttaactcaggagacaccaaccgcaccttcatatcctgattggtcaagctctatgcaggcttattatagtgctggagctactcctttttttgcctcacctgttgcttctcctgctccccacccatacatgtggggaggtcagcatcctcttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0106H06-LfBXE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0106H06.1" temp_strand="-" temp_description="C02HBa0106H06.1  htgs_phase:2 submitted_to_sgn_as:BAC19 gi|9858768|gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence">
        <position start="103597" stop="98180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103297" g_stop="103162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103161" i_stop="98960" i_length="4202">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98959" g_stop="98836" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="260" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98835" i_stop="98701" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98700" g_stop="98653" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="308" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98652" i_stop="98567" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98566" g_stop="98480" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="392" r_length="84" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98479" i_stop="98365" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.631" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98364" g_stop="98351" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="406" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0106H06.1" gen_strand="-" ref_id="SGN-E355615" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0106H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103297" e_stop="103162"/>
          <exon e_start="98959" e_stop="98836"/>
          <exon e_start="98700" e_stop="98653"/>
          <exon e_start="98566" e_stop="98480"/>
          <exon e_start="98364" e_stop="98351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTCTTTATGGCTGCTCTTTGTTTAGGATAATTTTTTTCTTCTTAAATCTCTTTGGGGGTGGGATAACAAACTTAACTTTTTGGAAAATCCGACTTGGAACCTTCTTGTTCCACCTCAGATTCACTACACAGGTCAGCTCTCCCCACCACCTTTACTTTCACTGTTTTTTTCTTCTTGCTTTCTAGTATTTGTTTATCAATTGTTTGATTTTGTGTTTGCTAGCACCTTAACATGCTTTTTAGTTATCAGCGGTTTTCATTCACAATGACCGACAGAATTATCCTTAAGGAATTAGATTTTAAAATTGGGATCTTTTTAGTTGTCAGGGGTTTTCTTGATTCTTGTTACTGTTGAATAGTTTTGATTTTTTTTTTTTAATTTTGGAGTTTGATGATCAATTTAGCATGTTCAAAAGGTTTCTTGAAAGTTAGTTCTTGCAATTAAGTTGGTGAATTTTGACAAAAGAAAACCCAATTCTCTGACCAGCTTTGTGTTGTGAATTAGATGCCTATGATTCAAATCTTTTTTGGGTTTAAGTAGACTTTCCAAAATTCTCCATTTGTTCCTTGGGTATAATATCTTTTGCTGTAAGCTGTGAATGACATGTTTCTTAAGCGACATTACACCGAAATTTGGTTAATCTGACTAACATTGGAAGTATTCTTTTAAGCTAGATTGATTAACCTTTATTTATCAATAAAAAGGAAATTAATACAAATTAGATGGTGTTTCTTGGTTTTGGAGGAGGAATGTGGAAATAATAGGCGCTCTTGACTATTGCGAAGTTGGTTTGTTTCCACAAAAGATCTTCCCCTGGGGGAGTTGTCAAGTATAGCCTGACTGAAATTGGTTGTGATGTTCAAGATTGTGTTTTGTTTGCTATTCAAGTTAGAATGATCCTGAGTTTAAAAAATAAGTTAGAATGATCTTTGTGATTTTAATCCTTTGTAAAACTTGATAAGTGTAACTCAACATGAACAAGCTGTGTTTTCTTTTGAGGAATCAGCTTCTAATTGAGCATCAAACACGCATCACAAATTTATTGTTTAGTAATAAAATTGATTCGGCAAAAAACCAGGGAAAATTTTACATACATTACTGCCTTTAAGAATATAAAATATTGAACTGGCCATCCACAACCTATTTTTCTACTATTTTTTTGTTTCTTTTTCTCAACTTGAAATTGTTGTATTAGTTAGACTCTGCGAGGAATGATTGCATAAGATTTTGCTTCTTCTATAATGAATTTGAATACATGCTCGTAAAATGATGTAGTTTTGCCTAGTTTTCTTTGCTATACAATGCACTTTTAATTGTTTCAACTATAATTATGTCATGTCAATAGTGGGGCGGCTTGGCGTTGGTGAGCATTTGGAAAATACATTATTTGGATATTAGGTTAAGCATTCTATTTCGTAGTGGACATTATTGCCATTTATTTGTAAGAAAAGTGAACAAAAACTGTGCCTGAAGATGGTGTACATAGATGTTGGCTATATTCTTTAAGCAAAAACACCAATATTAGGCTTAGAAAGATTTAACATCAAGAAGACATGTTTAATTTTGTCAACTGTTTTTGCAATCAGTCATTTGTGCAGGATTGGCATTCTGTTTTTGTTGCAATTCGTCTTTATGGGAATGATGTTGAAGCCATGAAAAGTATGGACTAGCAACCATTAAGGAAAAACTTGACCTTTATTAATGAATGTCATTATCTGTGTTTTGGACTTTGATTAAGACTGGGCGACGGAATGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGCATACGGGACGGGATAGTCTGAACCGGTATACAGAACGGGACGGAACTGTGGTTTCGTACCGGTGTACCAGTACCGGTTCATCCCAGTTCCGGTCCGGTTCAGATCCGGTTTACTTAATATATATTAATTTTTTTATATTTTATATTGTATATAATTTATATTGTATATTTTATATTTTATGTAATTTATATTTTATATTTTATATAATTTATATTTTATATTTTATATAAATTATATCTTATATTTTATATTTTATATAAATTATGTCTTATATTTTATACTTTATATTTTATATAATTTCTAAATATGAAAATTAATTACCCACCACACCCTCCCCTTCCCTGACACTTGGCAAGCGGCAACTTTATTAAAAGCTGCCCTGCGCCCTAAGCCCCTGACCAGACCACCTGCCCCTGCTGCCCTGCAGCTTTATCAAATTAGACTTTACTTGCAAACTTAATAACAAAAAAAATTTGAAAAATATCTTTAAAATAAACTTAAGTAAAAAATTATAGTATAAATTTAAAAACTATTAATTTAAACTTAGAAAAATAAAAAAAATACATATTTTTGTAATCCCAAAAAATGTCGTCCCGTTTATCCCGTCCGTTCAAATCCAGTCCATTTCGGTTCGTTCCGGTTCTATCTCGGTATATAGTGGAACGGGAGGAACCGATTATTCGTCCCGGTAATTTCGGTCTGGTTCATCCGGTACCGGTCAACGCGTCCCGTTTCGGTCCGGTACCGGTTCGTTCCGGTCCGGTGAATCGGTTCCGGTCCATTGACCAGTCTTAACTTTGATTATGTAAATAGATACATCCAGTACTTTTCTCCAGATTCATCATGTAGCCATGTAAATGACTTTCCTTTTCTTCATTATCTGCTAGTCTACAATGTTCTCTTTTGAAGAAATCTTACCAGATAGCAATTTCTTTAAGGAAGTACTTTAATATTTTTAATAAGATTTAGTTTGAAATGAGTACACATCTTATTTACGAAATATCTCTCACTAGATTTGTGCTTCATTTTCTTTACGTTTGAGTCGCATACAGATCGTTCTGTAAGTTAAAAGATTGCTTTGCATGGCTTTGTAAATTATTTATCTTTGATGGATTTGCAACTTCTTTCATCCTTGTTACTAACATTCTTTCTCATTGTTATGGTATGCATGGTGTGTATGGTCTACTCCTAGGCAGAGAGGTTTAAAGAACTTGTCTACACCTATGTTGCACGAATTTTTTAAAATCTTTGCCACACTTGTGTCGGCACGGCATGGGTGAGAGATTCTTATTGGATTTGGTCAACTTACCTTGGGTAATTTGACCATATTCTATTATTGAGAGTATAGATTGACCATATAAAGTATGAGAATGCTTTTCCATTATGCGTGAAAAGATAAAATATTGGTGTTTGTAAGGAATGGAGTTATTAGTTTTAGTTCAATAACTCAAACTAATCGAAATATATACTTTATATGTTGTAATAAACATTTATTAGCCGCATCCCAACACCCGCATCCACATTTGAATCCATATCCCAACAACAACAATATACCTAGTAAAATCTCACCTCACAGAGTGGGGTCTAGGGAGGCTAAGGTTTATATGGACCTTACTTCCATCTGGTGGAGGTAGAGAGTCTATTTTCGGAAGACCATCATCTCAAGCAAATCAAATCAAAGTAGTAATGAAAAAGAAACATGATAGTGAAGAAAACATGGCAACTTGGATCAGTGCCCATCTTAAAATTTGTGTCATGAAGAATCCGACCTCTAGATCTGCACCCAAATTGGATTTCCGCACTTGAGTTTGATCAACATAGATTATACCAATATATTTCACAAGTGTAATTTTTCAATCATTGTATTTACATCAAGCCAACTGTAACTAATGTGGATTTGAGGCATAGTGATCTTTAGTCTTCCTTTTATGTCATAAGGTTAACTTCCTAGGCGGAATTTGTGTATCATTTGCTTACTAGAAAGCCAAAAACTGTATACTTGTTCATATGACTATGGCTCATGAATTGACAAATTTCATGCTGGCTTCAAGCCTTCACAACCTTCGTCCATTTCGATTTGGGACTGGCAATGTGAGCAATCACTTGGAAGGAAATTCTCTTGAAAGACCTATCTTCTCGTGGGATCAATGCCTCACAATGTAGACTTAGCTAAAGATATGGCAAATGGTAGAAAAGGATTCATATAGGTAATATATACTAGTAGGGAATATGATTTAGTCTTGTTGGAGAACTTCTAATATTATTTTCATTTATTACAATTACTATTATTTATATATATAAAACTTAATTTTCACTTTTATTTTTACTTGGTATGATGATAACATGAGTTGAGCTTAAAGAAATAAGTGAGGATTCAGATAGTCAAATTGAGATTGAGCATAATATTTGTTGTTGTTCCTATGACAACGAAAGAAATAATCCTTATAGATGCAAAATGGTAGGAGTTCTAACTTCTACTTATCCAAAAAAAGAAAATGGAAGAGTTTTAATTTCTTTTCCCTGTTATAATCTACCTAGCCTTTCGCTGAGCAAGCCATTTTTGGATTATTCCCGTGGATACCTGCATATACAATTGATTGACCCAATGGGAGCTGGGGAAGAGAGCACTCCTACAAAGACTTCAAAGCCTCCTTTAACTCAGGTCCCTTTCTTTCTCTTTATTGTCTTTTTTATGATTTACAGCTAATCAATCATTAAACATGTGCTATTCTGTCTCTCTCTGTGTGTGTTAATGCATGTCGGCTCACTGTTCACAAGTTTTCTAATGTTTGATCAGGAGACACCAACCGCACCTTCATATCCTGATTGGTCAAGCTCTATGCAGGTTGCTATTAATTTCATAAATGATTAAGCCAATGACATGAACGCTGATGAATAATATTTTAGTTTTCTATTTCTTTTCCTGTTTAGGCTTATTATAGTGCTGGAGCTACTCCTCCTTTTTTTGCCTCACCTGTTGCTTCTCCTGCTCCCCACCCATACATGTGGGGAGGTCAGGTAGTTGATTTTCTGTTCCTAATTTATTTGTTCTTTTTTTTTTCCGATCACTAGCTATCTCACAACCTCTGAACTCACAGTACTACTTACTCTGATCACCCATCTCATATTTCAGCATCCTCTTATGCC</genome_strand>
        <mrna_strand>CTGTTTTCTTTATGGCTGCTCTTTGTTTAGGATAATTTTTTTCTTCTTAAATCTCTTTGGGGGTGGGATAAAAAACTTAACTTTTTGGAAAATCCGACTTGGAACCTTCTTGTTCCACCTCAGATTCAGTACACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTCGCTGAGCAAGCCATTTTTGGTTTATTCCCGTGGATACCTGCATATACAATTGATTGACCCAATGGGAGCTGGGGAAGAGAGCACTCCTACAAAGACTTCAAAGCCTCCTTTAACTCAG.......................................................................................................................................GAGACACCAACCGCACCTTCATATCCTGATTGGTCAAGCTCTATGCAG......................................................................................GCTTATTATAGTGCTGGAGCTA---CTCCTTTTTTTGCCTCACCTGTTGCTTCTCCTGCTCCCCACCCATACATGTGGGGAGGTCAG...................................................................................................................CATCCTCTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>135</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6872" PGL_stop="6336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6872" e_stop="6336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="6872" e_stop="6336" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6872" stop="6336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATCAAATGCTTATCATGGATCAGATCCAGCAATTGTGCTCTTATTTGAACCATCATTGCTCAACTTTGTAGCAGAGTACAAAATTATATGTGCTTTTCCATCGACAGATTTTGACAAGGCAACTGAATTTGATATATATTACTCAAGAGAGGGTTGTTGGAAAATTGCTGAGGAGATGTGCTTTGGAAGTAGAACAATATTTCCAAAATCAGGGATCCATGTGAATGGCGTTGTTTACTGGATGACAAGTAAGAATATTCTTGCTTTTGATCTAACAAAGGGTAGGACACAGCTCCTTGAAAGCTATGGCACTCGTGGGTTCTTGGGGACTTTTAGTGGAAAGCTCTGTAAGGTTGATGTCAGTGGTGATATAATCAGCTTAAACGTTTTGGCTAATACCCACTCAAATACAATGCAAATAGGTAGCCAAATCAAAATGTGGTCAGAGAAAGAGATTGTTGTTCTTGACAGTGAAATTGTTGGGGATGGTGCAGCAAGGAACCACACAGTTTTACATGTTGACAGTGATATAA</gDNA_template>
            <first_frame> Q  N  Q  M  L  I  M  D  Q  I  Q  Q  L  C  S  Y  L  N  H  H  C  S  T  L  *  Q  S  T  K  L  Y  V  L  F  H  R  Q  I  L  T  R  Q  L  N  L  I  Y  I  T  Q  E  R  V  V  G  K  L  L  R  R  C  A  L  E  V  E  Q  Y  F  Q  N  Q  G  S  M  *  M  A  L  F  T  G  *  Q  V  R  I  F  L  L  L  I  *  Q  R  V  G  H  S  S  L  K  A  M  A  L  V  G  S  W  G  L  L  V  E  S  S  V  R  L  M  S  V  V  I  *  S  A  *  T  F  W  L  I  P  T  Q  I  Q  C  K  *  V  A  K  S  K  C  G  Q  R  K  R  L  L  F  L  T  V  K  L  L  G  M  V  Q  Q  G  T  T  Q  F  Y  M  L  T  V  I  * </first_frame>
            <second_frame>  K  I  K  C  L  S  W  I  R  S  S  N  C  A  L  I  *  T  I  I  A  Q  L  C  S  R  V  Q  N  Y  M  C  F  S  I  D  R  F  *  Q  G  N  *  I  *  Y  I  L  L  K  R  G  L  L  E  N  C  *  G  D  V  L  W  K  *  N  N  I  S  K  I  R  D  P  C  E  W  R  C  L  L  D  D  K  *  E  Y  S  C  F  *  S  N  K  G  *  D  T  A  P  *  K  L  W  H  S  W  V  L  G  D  F  *  W  K  A  L  *  G  *  C  Q  W  *  Y  N  Q  L  K  R  F  G  *  Y  P  L  K  Y  N  A  N  R  *  P  N  Q  N  V  V  R  E  R  D  C  C  S  *  Q  *  N  C  W  G  W  C  S  K  E  P  H  S  F  T  C  *  Q  *  Y   </second_frame>
            <third_frame>   K  S  N  A  Y  H  G  S  D  P  A  I  V  L  L  F  E  P  S  L  L  N  F  V  A  E  Y  K  I  I  C  A  F  P  S  T  D  F  D  K  A  T  E  F  D  I  Y  Y  S  R  E  G  C  W  K  I  A  E  E  M  C  F  G  S  R  T  I  F  P  K  S  G  I  H  V  N  G  V  V  Y  W  M  T  S  K  N  I  L  A  F  D  L  T  K  G  R  T  Q  L  L  E  S  Y  G  T  R  G  F  L  G  T  F  S  G  K  L  C  K  V  D  V  S  G  D  I  I  S  L  N  V  L  A  N  T  H  S  N  T  M  Q  I  G  S  Q  I  K  M  W  S  E  K  E  I  V  V  L  D  S  E  I  V  G  D  G  A  A  R  N  H  T  V  L  H  V  D  S  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6870" stop="6337"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNAYHGSDPAIVLLFEPSLLNFVAEYKIICAFPSTDFDKATEFDIYYSREGCWKIAEEMCFGSRTIFPKSGIHVNGVVYWMTSKNILAFDLTKGRTQLLESYGTRGFLGTFSGKLCKVDVSGDIISLNVLANTHSNTMQIGSQIKMWSEKEIVVLDSEIVGDGAARNHTVLHVDSDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13399" PGL_stop="10269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13399" e_stop="12775"/>
            <exon e_start="11228" e_stop="11074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.970"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="13399" e_stop="12775" e_length="625"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="12774" i_stop="11229" i_length="1546"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="11228" e_stop="11074" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13399" stop="12775"/>
              <exon start="11228" stop="11074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13399" stop="12775"/>
              <exon start="11228" stop="11167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTACTGCAATTCCCCACGCCTAGCTAGTTGAAATCAGAAAAATGCGGTGTCCGTACTGCTCGGCGGAGCAAGGGCGGTGTACCAGCAGCACCAGTGGCAGACCGATAACCGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCTGATCTCCCCACTCTTCCCATCTCCGCCACTAACGACGATGAAGACCCATTTGAACCCACTGGTTTCATCACCACTTTCTCTACTTGGTCTCTCGAACCCTACCCAGTATTTGCCCAATCCTCCATTTCATTCGCCGGTCACCTTGCAGAGCTCGAGCGGGTCCTCGAAATGACGTCAACTTCCTCCAGTTCGTCCTCTTCTTCTGTCGTGGTGGAAAATCTCCGGGCTTATTTGCAGATTATTGATGTGGCTTCTATTCTGCGACTGGATTCTGATATTTCGGACCACGCGTTTCAGCTCTTCAGGGATTGTTCTTCAGCAACTTGCTTAAGGAATCGGAGTGTTGAAGCGCTTGCTACTGCTGCTCTTGTGCACGCTATCAGGGAAGCCCAAGAGCCGAGAACTCTCCAG : GAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTCCATATGCCAAGGTTTTGTACACTCCTTCAGCTGAATAAATCTGC</gDNA_template>
            <first_frame> Q  Y  C  N  S  P  R  L  A  S  *  N  Q  K  N  A  V  S  V  L  L  G  G  A  R  A  V  Y  Q  Q  H  Q  W  Q  T  D  N  R  V  H  I  L  R  P  G  S  G  G  A  I  N  P  I  P  P  S  F  S  Y  P  C  P  R  F  S  S  V  P  G  Y  F  *  S  P  H  S  S  H  L  R  H  *  R  R  *  R  P  I  *  T  H  W  F  H  H  H  F  L  Y  L  V  S  R  T  L  P  S  I  C  P  I  L  H  F  I  R  R  S  P  C  R  A  R  A  G  P  R  N  D  V  N  F  L  Q  F  V  L  F  F  C  R  G  G  K  S  P  G  L  F  A  D  Y  *  C  G  F  Y  S  A  T  G  F  *  Y  F  G  P  R  V  S  A  L  Q  G  L  F  F  S  N  L  L  K  E  S  E  C  *  S  A  C  Y  C  C  S  C  A  R  Y  Q  G  S  P  R  A  E  N  S  P   : G  N  I  S  C  G  Q  F  T  S  E  G  N  R  E  V  H  K  D  S  W  R  S  V  T  T  Q  S  T  Y  Q  *  *  F  Y  I  S  P  Y  A  K  V  L  Y  T  P  S  A  E  *  I  C </first_frame>
            <second_frame>  S  T  A  I  P  H  A  *  L  V  E  I  R  K  M  R  C  P  Y  C  S  A  E  Q  G  R  C  T  S  S  T  S  G  R  P  I  T  E  C  T  S  C  G  R  V  V  E  E  R  L  T  Q  S  H  H  L  F  H  T  R  A  Q  D  S  P  L  C  L  A  T  S  D  L  P  T  L  P  I  S  A  T  N  D  D  E  D  P  F  E  P  T  G  F  I  T  T  F  S  T  W  S  L  E  P  Y  P  V  F  A  Q  S  S  I  S  F  A  G  H  L  A  E  L  E  R  V  L  E  M  T  S  T  S  S  S  S  S  S  S  S  V  V  V  E  N  L  R  A  Y  L  Q  I  I  D  V  A  S  I  L  R  L  D  S  D  I  S  D  H  A  F  Q  L  F  R  D  C  S  S  A  T  C  L  R  N  R  S  V  E  A  L  A  T  A  A  L  V  H  A  I  R  E  A  Q  E  P  R  T  L  Q  :  E  I  S  V  A  A  N  L  P  Q  K  E  I  G  K  Y  I  K  I  L  G  E  A  L  Q  L  S  Q  P  I  N  S  N  S  I  S  V  H  M  P  R  F  C  T  L  L  Q  L  N  K  S   </second_frame>
            <third_frame>   V  L  Q  F  P  T  P  S  *  L  K  S  E  K  C  G  V  R  T  A  R  R  S  K  G  G  V  P  A  A  P  V  A  D  R  *  P  S  A  H  P  A  A  G  *  W  R  S  D  *  P  N  P  T  I  F  F  I  P  V  P  K  I  L  L  C  A  W  L  L  L  I  S  P  L  F  P  S  P  P  L  T  T  M  K  T  H  L  N  P  L  V  S  S  P  L  S  L  L  G  L  S  N  P  T  Q  Y  L  P  N  P  P  F  H  S  P  V  T  L  Q  S  S  S  G  S  S  K  *  R  Q  L  P  P  V  R  P  L  L  L  S  W  W  K  I  S  G  L  I  C  R  L  L  M  W  L  L  F  C  D  W  I  L  I  F  R  T  T  R  F  S  S  S  G  I  V  L  Q  Q  L  A  *  G  I  G  V  L  K  R  L  L  L  L  L  L  C  T  L  S  G  K  P  K  S  R  E  L  S  R :   K  Y  Q  L  R  P  I  Y  L  R  R  K  S  G  S  T  *  R  F  L  E  K  R  Y  N  S  V  N  L  S  I  V  I  L  Y  Q  S  I  C  Q  G  F  V  H  S  F  S  *  I  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13374" stop="12775"/>
                    <exon start="11228" stop="11076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVEIRKMRCPYCSAEQGRCTSSTSGRPITECTSCGRVVEERLTQSHHLFHTRAQDSPLCLATSDLPTLPISATNDDEDPFEPTGFITTFSTWSLEPYPVFAQSSISFAGHLAELERVLEMTSTSSSSSSSSVVVENLRAYLQIIDVASILRLDSDISDHAFQLFRDCSSATCLRNRSVEALATAALVHAIREAQEPRTLQEISVAANLPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11338" e_stop="11315"/>
            <exon e_start="11228" e_stop="11070"/>
            <exon e_start="10816" e_stop="10269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="0.958"/>
          <exon-intron don_prob="0.988" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="11338" e_stop="11315" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11314" i_stop="11229" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11228" e_stop="11070" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.963">
            <gDNA_intron_boundary i_start="11069" i_stop="10817" i_length="253"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="10816" e_stop="10269" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11338" stop="11315"/>
              <exon start="11228" stop="11070"/>
              <exon start="10816" stop="10587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10806" stop="10269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCTTATTTTTTGCAACTGAGTG : GAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTCCATATGCCAAGGTTTTGTACACTCCTTCAGCTGAATAAATCTGCTCAG : GAGCTGGCGACTCACATTGGTGAAGTAATCATCAATAAATGCTTTTGCACTAGAAGGAATCCAATTAGCATCTCTGCTGCTGCTATATATTTGGCATGTCAACTAGAGGACAAGCGGAAGACCCAGGCTGAAATATGTAAGGTGACTGGACTAACTGAGGTTACTCTTCGTAAGGTGTACAAGGAGCTTTTGGAGAACTGGGATGATCTCCTACCATCAAGTTATAAACCAGTTGTTCCACCAGAGAAGGCTTTTCCTTCAGCTACCATTGCTACAGGCCGTTCATCAACACCGAGAGTTGATATAGTTGAGGGAACTTCATCTGAGAGGGACAAGCCAGTTAAACCAGTCGACTCATTAGATATATCTCCTCAGATCAGAGGCAAGGAGGACTCCGACAGCAAAGATAATATTAATACAACTCAATTATCTTGGCCACCACCATTTTGGAAGCCTCAAGCTCCTGCTGAAGGTGGTGTTAAATCAGCTACAGATAAGAGTCAGAATGCTACTGAAGAAATGGAGATTGATTTATAATATAAATCTCA</gDNA_template>
            <first_frame> M  L  I  F  C  N  *  V  :  E  I  S  V  A  A  N  L  P  Q  K  E  I  G  K  Y  I  K  I  L  G  E  A  L  Q  L  S  Q  P  I  N  S  N  S  I  S  V  H  M  P  R  F  C  T  L  L  Q  L  N  K  S  A  Q  :  E  L  A  T  H  I  G  E  V  I  I  N  K  C  F  C  T  R  R  N  P  I  S  I  S  A  A  A  I  Y  L  A  C  Q  L  E  D  K  R  K  T  Q  A  E  I  C  K  V  T  G  L  T  E  V  T  L  R  K  V  Y  K  E  L  L  E  N  W  D  D  L  L  P  S  S  Y  K  P  V  V  P  P  E  K  A  F  P  S  A  T  I  A  T  G  R  S  S  T  P  R  V  D  I  V  E  G  T  S  S  E  R  D  K  P  V  K  P  V  D  S  L  D  I  S  P  Q  I  R  G  K  E  D  S  D  S  K  D  N  I  N  T  T  Q  L  S  W  P  P  P  F  W  K  P  Q  A  P  A  E  G  G  V  K  S  A  T  D  K  S  Q  N  A  T  E  E  M  E  I  D  L  *  Y  K  S   </first_frame>
            <second_frame>  C  L  F  F  A  T  E  W :   K  Y  Q  L  R  P  I  Y  L  R  R  K  S  G  S  T  *  R  F  L  E  K  R  Y  N  S  V  N  L  S  I  V  I  L  Y  Q  S  I  C  Q  G  F  V  H  S  F  S  *  I  N  L  L  R :   S  W  R  L  T  L  V  K  *  S  S  I  N  A  F  A  L  E  G  I  Q  L  A  S  L  L  L  L  Y  I  W  H  V  N  *  R  T  S  G  R  P  R  L  K  Y  V  R  *  L  D  *  L  R  L  L  F  V  R  C  T  R  S  F  W  R  T  G  M  I  S  Y  H  Q  V  I  N  Q  L  F  H  Q  R  R  L  F  L  Q  L  P  L  L  Q  A  V  H  Q  H  R  E  L  I  *  L  R  E  L  H  L  R  G  T  S  Q  L  N  Q  S  T  H  *  I  Y  L  L  R  S  E  A  R  R  T  P  T  A  K  I  I  L  I  Q  L  N  Y  L  G  H  H  H  F  G  S  L  K  L  L  L  K  V  V  L  N  Q  L  Q  I  R  V  R  M  L  L  K  K  W  R  L  I  Y  N  I  N  L  </second_frame>
            <third_frame>   A  Y  F  L  Q  L  S   : G  N  I  S  C  G  Q  F  T  S  E  G  N  R  E  V  H  K  D  S  W  R  S  V  T  T  Q  S  T  Y  Q  *  *  F  Y  I  S  P  Y  A  K  V  L  Y  T  P  S  A  E  *  I  C  S   : G  A  G  D  S  H  W  *  S  N  H  Q  *  M  L  L  H  *  K  E  S  N  *  H  L  C  C  C  Y  I  F  G  M  S  T  R  G  Q  A  E  D  P  G  *  N  M  *  G  D  W  T  N  *  G  Y  S  S  *  G  V  Q  G  A  F  G  E  L  G  *  S  P  T  I  K  L  *  T  S  C  S  T  R  E  G  F  S  F  S  Y  H  C  Y  R  P  F  I  N  T  E  S  *  Y  S  *  G  N  F  I  *  E  G  Q  A  S  *  T  S  R  L  I  R  Y  I  S  S  D  Q  R  Q  G  G  L  R  Q  Q  R  *  Y  *  Y  N  S  I  I  L  A  T  T  I  L  E  A  S  S  S  C  *  R  W  C  *  I  S  Y  R  *  E  S  E  C  Y  *  R  N  G  D  *  F  I  I  *  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11317" stop="11315"/>
                    <exon start="11228" stop="11070"/>
                    <exon start="10816" stop="10280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEISVAANLPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVIINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSSYKPVVPPEKAFPSATIATGRSSTPRVDIVEGTSSERDKPVKPVDSLDISPQIRGKEDSDSKDNINTTQLSWPPPFWKPQAPAEGGVKSATDKSQNATEEMEIDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14677" PGL_stop="19078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14677" e_stop="15058"/>
            <exon e_start="15222" e_stop="15437"/>
            <exon e_start="18912" e_stop="19078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.862"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14677" e_stop="15058" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15059" i_stop="15221" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15222" e_stop="15437" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15438" i_stop="18911" i_length="3474"/>
          </intron>
          <exon e_serial="3" e_score="0.862">
            <gDNA_exon_boundary e_start="18912" e_stop="19078" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14677" stop="15058"/>
              <exon start="15222" stop="15437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14677" stop="15053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14796" stop="15058"/>
              <exon start="15222" stop="15437"/>
              <exon start="18912" stop="19078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619944" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATAGATTATCCAGGAGAATCCCAGAATAGAGATGCAATCAAATTCAAATAAACCAAACGTACATATAAAAGGGAAAAGGGAAAAGGCAAAAAGGAATTTTATTTGTTCAAAAAAGAGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACGTTCTC : GAAATGGAAGAAAGGGAGAAGTTAGTGAAGCATATGTGGGATGTATACACAAACAGCCGTGGGATCAAATTGTTAAAGTTTTGGCAGGAAGCATTTGAGGCTGCCTATGAGGAGTTAGCCAGTGACGTCCCTGGAGTCCCAGAGGATGCCCTTTCTGAGATTGCTAAGATGTCTGTACGCTACATTCCTATTGAATCACCACCTCTTCATTCGTCG : GGAATTCGTGAATTAAGTCTAAGGCAAATGAAGAGGGAGCAAACAACTGCAACAGGGAGAAAGTTATGACTTGGAGAATATCAATCCCCATTTGTGTGGTCACCGCTTTTCACACACATGAATGATAGATTTATCCCATCTGCTGTCTGGTTATTGTGAAATAGCAT</gDNA_template>
            <first_frame> E  N  R  L  S  R  R  I  P  E  *  R  C  N  Q  I  Q  I  N  Q  T  Y  I  *  K  G  K  G  K  R  Q  K  G  I  L  F  V  Q  K  R  E  R  R  N  E  G  *  R  S  S  H  I  N  A  N  S  T  F  I  V  V  H  D  F  E  E  G  N  F  L  F  C  H  F  R  *  R  S  L  *  V  L  G  L  C  R  Y  L  I  V  S  F  V  V  Y  V  H  R  N  C  Y  P  P  L  V  R  R  *  P  Q  R  H  I  R  *  H  R  H  S  P  P  R  R  S  *  R  S   : R  N  G  R  K  G  E  V  S  E  A  Y  V  G  C  I  H  K  Q  P  W  D  Q  I  V  K  V  L  A  G  S  I  *  G  C  L  *  G  V  S  Q  *  R  P  W  S  P  R  G  C  P  F  *  D  C  *  D  V  C  T  L  H  S  Y  *  I  T  T  S  S  F  V   : G  N  S  *  I  K  S  K  A  N  E  E  G  A  N  N  C  N  R  E  K  V  M  T  W  R  I  S  I  P  I  C  V  V  T  A  F  H  T  H  E  *  *  I  Y  P  I  C  C  L  V  I  V  K  *  H </first_frame>
            <second_frame>  K  I  D  Y  P  G  E  S  Q  N  R  D  A  I  K  F  K  *  T  K  R  T  Y  K  R  E  K  G  K  G  K  K  E  F  Y  L  F  K  K  E  K  E  G  M  R  D  D  D  L  P  I  S  T  P  T  A  P  S  S  S  F  T  T  S  K  K  E  T  S  Y  F  A  I  F  G  R  G  R  Y  K  F  W  A  F  A  A  I  S  L  L  A  L  W  S  M  F  T  G  T  V  T  L  R  W  S  A  G  N  L  N  A  I  S  D  D  I  D  I  P  L  P  E  D  L  D  V  L  :  E  M  E  E  R  E  K  L  V  K  H  M  W  D  V  Y  T  N  S  R  G  I  K  L  L  K  F  W  Q  E  A  F  E  A  A  Y  E  E  L  A  S  D  V  P  G  V  P  E  D  A  L  S  E  I  A  K  M  S  V  R  Y  I  P  I  E  S  P  P  L  H  S  S  :  G  I  R  E  L  S  L  R  Q  M  K  R  E  Q  T  T  A  T  G  R  K  L  *  L  G  E  Y  Q  S  P  F  V  W  S  P  L  F  T  H  M  N  D  R  F  I  P  S  A  V  W  L  L  *  N  S   </second_frame>
            <third_frame>   K  *  I  I  Q  E  N  P  R  I  E  M  Q  S  N  S  N  K  P  N  V  H  I  K  G  K  R  E  K  A  K  R  N  F  I  C  S  K  K  R  K  K  E  *  G  M  T  I  F  P  Y  Q  R  Q  Q  H  L  H  R  R  S  R  L  R  R  R  K  L  P  I  L  P  F  S  V  E  V  V  I  S  F  G  P  L  P  L  S  H  C  *  L  C  G  L  C  S  P  E  L  L  P  S  V  G  P  P  V  T  S  T  P  Y  P  M  T  S  T  F  P  S  P  K  I  L  T  F  S :   K  W  K  K  G  R  S  *  *  S  I  C  G  M  Y  T  Q  T  A  V  G  S  N  C  *  S  F  G  R  K  H  L  R  L  P  M  R  S  *  P  V  T  S  L  E  S  Q  R  M  P  F  L  R  L  L  R  C  L  Y  A  T  F  L  L  N  H  H  L  F  I  R  R :   E  F  V  N  *  V  *  G  K  *  R  G  S  K  Q  L  Q  Q  G  E  S  Y  D  L  E  N  I  N  P  H  L  C  G  H  R  F  S  H  T  *  M  I  D  L  S  H  L  L  S  G  Y  C  E  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14732" stop="15058"/>
                    <exon start="15222" stop="15437"/>
                    <exon start="18912" stop="18980"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKRTYKREKGKGKKEFYLFKKEKEGMRDDDLPISTPTAPSSSFTTSKKETSYFAIFGRGRYKFWAFAAISLLALWSMFTGTVTLRWSAGNLNAISDDIDIPLPEDLDVLEMEEREKLVKHMWDVYTNSRGIKLLKFWQEAFEAAYEELASDVPGVPEDALSEIAKMSVRYIPIESPPLHSSGIRELSLRQMKREQTTATGRKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28478" PGL_stop="30083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28478" e_stop="29171"/>
            <exon e_start="29719" e_stop="30083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28478" e_stop="29171" e_length="694"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29172" i_stop="29718" i_length="547"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="29719" e_stop="30083" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28478" stop="29171"/>
              <exon start="29719" stop="30083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28478" stop="29053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28483" stop="29171"/>
              <exon start="29719" stop="29763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28483" stop="29075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28483" stop="28966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28485" stop="29053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGGAAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATATGTGAGACCACTACAATGAGGCGTCGTCACAAGAGAAATGCCAACACCAAGAGGAGATCAATCAAGCAATCCAGACCAAGTTTTTCCTCTTCAAAAG : GTAGAAGATCGTCGGTTTCTACGTCATCAGATAGCGAGCTACCGGCAAGGTTATCGGTGTTTAAGAAGCTGATACCGTGTAGTGTGGATGGGAAAGTGAAGGAGAGTTTCGCGATAGTGAAGAAATCTCAGGACCCGTACTAAGATTTCAAGAGATCGATGATGGAAATGATTTTAGAGAAGGAAATGTTTGAGAAGAATGAGCTGGAACAGCTTTTACAATGTTTTCTGTCGTTGAACGGAAAGCATTATCATGGAGTGATAGTTGAGGCGTTCTCAGACATTTGGGAGACTTTGTTTTTAGGTAATAATGATAGAGTAAGGAGGATGTCAATTCATGATCCCACACCCACCTACTGTAGGTAG</gDNA_template>
            <first_frame> M  G  K  S  L  K  L  R  F  S  R  V  I  A  S  F  N  S  C  R  S  K  N  P  S  S  L  P  Q  N  P  N  F  F  P  H  K  L  T  S  T  K  H  I  S  P  D  F  P  L  I  D  Q  N  Q  N  Q  N  H  R  N  Y  V  P  E  S  T  M  I  S  V  G  C  C  R  S  E  F  K  W  E  K  E  E  K  F  H  V  V  S  S  S  F  V  S  E  E  E  E  C  E  E  E  I  N  L  A  L  R  P  P  L  T  P  P  R  F  S  R  I  V  V  E  K  K  K  K  K  Q  Q  R  V  K  K  T  K  T  K  S  R  I  I  R  M  S  T  S  S  A  D  E  Y  S  G  I  L  S  G  T  N  T  D  W  D  N  N  E  E  E  T  E  S  L  V  S  S  S  R  S  C  Y  D  F  S  S  D  D  S  S  T  D  F  N  P  H  L  E  T  I  C  E  T  T  T  M  R  R  R  H  K  R  N  A  N  T  K  R  R  S  I  K  Q  S  R  P  S  F  S  S  S  K   : G  R  R  S  S  V  S  T  S  S  D  S  E  L  P  A  R  L  S  V  F  K  K  L  I  P  C  S  V  D  G  K  V  K  E  S  F  A  I  V  K  K  S  Q  D  P  Y  *  D  F  K  R  S  M  M  E  M  I  L  E  K  E  M  F  E  K  N  E  L  E  Q  L  L  Q  C  F  L  S  L  N  G  K  H  Y  H  G  V  I  V  E  A  F  S  D  I  W  E  T  L  F  L  G  N  N  D  R  V  R  R  M  S  I  H  D  P  T  P  T  Y  C  R  * </first_frame>
            <second_frame>  W  E  K  V  *  S  F  G  S  P  E  L  L  L  L  S  I  R  A  V  R  K  T  L  L  L  F  P  K  I  L  I  S  S  H  I  S  S  L  V  Q  N  T  F  P  P  I  S  L  L  L  I  K  I  K  I  K  I  T  V  I  T  C  Q  N  P  R  *  S  P  L  G  V  V  D  Q  N  S  S  G  R  K  K  R  S  F  T  W  F  L  V  P  S  C  L  K  K  K  N  V  K  R  R  S  I  W  P  Y  D  L  L  L  H  L  R  D  S  V  E  L  L  L  R  R  R  R  R  N  N  S  E  L  K  K  R  K  Q  K  V  E  S  S  E  *  V  L  P  Q  L  M  S  T  A  G  Y  *  A  V  L  I  L  I  G  I  I  M  K  R  K  L  N  L  *  F  H  L  P  E  A  V  T  I  S  Q  A  M  T  H  L  L  I  S  T  L  T  *  K  P  Y  V  R  P  L  Q  *  G  V  V  T  R  E  M  P  T  P  R  G  D  Q  S  S  N  P  D  Q  V  F  P  L  Q  K  :  V  E  D  R  R  F  L  R  H  Q  I  A  S  Y  R  Q  G  Y  R  C  L  R  S  *  Y  R  V  V  W  M  G  K  *  R  R  V  S  R  *  *  R  N  L  R  T  R  T  K  I  S  R  D  R  *  W  K  *  F  *  R  R  K  C  L  R  R  M  S  W  N  S  F  Y  N  V  F  C  R  *  T  E  S  I  I  M  E  *  *  L  R  R  S  Q  T  F  G  R  L  C  F  *  V  I  M  I  E  *  G  G  C  Q  F  M  I  P  H  P  P  T  V  G   </second_frame>
            <third_frame>   G  K  K  F  E  A  S  V  L  Q  S  Y  C  F  F  Q  F  V  P  F  E  K  P  F  F  S  S  P  K  S  *  F  L  P  T  *  A  H  *  Y  K  T  H  F  P  R  F  P  S  Y  *  S  K  S  K  S  K  S  P  *  L  R  A  R  I  H  D  D  L  R  W  V  L  *  I  R  I  Q  V  G  E  R  R  E  V  S  R  G  F  *  F  L  R  V  *  R  R  R  M  *  R  G  D  Q  F  G  L  T  T  S  S  Y  T  S  A  I  Q  *  N  C  C  *  E  E  E  E  E  T  T  A  S  *  K  N  E  N  K  K  *  N  H  P  N  E  Y  F  L  S  *  *  V  Q  R  D  I  K  R  Y  *  Y  *  L  G  *  *  *  R  G  N  *  I  F  S  F  I  F  Q  K  L  L  R  F  L  K  R  *  L  I  Y  *  F  Q  P  S  L  R  N  H  M  *  D  H  Y  N  E  A  S  S  Q  E  K  C  Q  H  Q  E  E  I  N  Q  A  I  Q  T  K  F  F  L  F  K  R :   *  K  I  V  G  F  Y  V  I  R  *  R  A  T  G  K  V  I  G  V  *  E  A  D  T  V  *  C  G  W  E  S  E  G  E  F  R  D  S  E  E  I  S  G  P  V  L  R  F  Q  E  I  D  D  G  N  D  F  R  E  G  N  V  *  E  E  *  A  G  T  A  F  T  M  F  S  V  V  E  R  K  A  L  S  W  S  D  S  *  G  V  L  R  H  L  G  D  F  V  F  R  *  *  *  *  S  K  E  D  V  N  S  *  S  H  T  H  L  L  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28478" stop="29171"/>
                    <exon start="29719" stop="29861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGKSLKLRFSRVIASFNSCRSKNPSSLPQNPNFFPHKLTSTKHISPDFPLIDQNQNQNHRNYVPESTMISVGCCRSEFKWEKEEKFHVVSSSFVSEEEECEEEINLALRPPLTPPRFSRIVVEKKKKKQQRVKKTKTKSRIIRMSTSSADEYSGILSGTNTDWDNNEEETESLVSSSRSCYDFSSDDSSTDFNPHLETICETTTMRRRHKRNANTKRRSIKQSRPSFSSSKGRRSSVSTSSDSELPARLSVFKKLIPCSVDGKVKESFAIVKKSQDPY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29862" stop="30083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFKRSMMEMILEKEMFEKNELEQLLQCFLSLNGKHYHGVIVEAFSDIWETLFLGNNDRVRRMSIHDPTPTYCR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41537" PGL_stop="33471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41537" e_stop="41124"/>
            <exon e_start="40643" e_stop="39951"/>
            <exon e_start="39641" e_stop="39330"/>
            <exon e_start="38916" e_stop="38574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.929"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41537" e_stop="41124" e_length="414"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="40643" e_stop="39951" e_length="693"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39641" e_stop="39330" e_length="312"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="38916" e_stop="38574" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41537" stop="41124"/>
              <exon start="40643" stop="40443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41537" stop="41124"/>
              <exon start="40643" stop="40589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41531" stop="41124"/>
              <exon start="40643" stop="40453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41527" stop="41124"/>
              <exon start="40643" stop="40499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41510" stop="41124"/>
              <exon start="40643" stop="40378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41394" stop="41124"/>
              <exon start="40643" stop="40263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41124"/>
              <exon start="40643" stop="40257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41222" stop="41124"/>
              <exon start="40643" stop="39982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40463" stop="39951"/>
              <exon start="39641" stop="39392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40463" stop="39951"/>
              <exon start="39641" stop="39543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40452" stop="39951"/>
              <exon start="39641" stop="39429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40326" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40316" stop="39951"/>
              <exon start="39641" stop="39396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40288" stop="39951"/>
              <exon start="39641" stop="39330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40064" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40046" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40030" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450579" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39992" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39566" stop="39330"/>
              <exon start="38916" stop="38575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284434" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38887" stop="38615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAACATTTCTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAG : GGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTG : GTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG : GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAGGAAA</gDNA_template>
            <first_frame> N  N  I  S  Y  S  S  L  L  H  I  S  V  Y  S  V  H  S  A  T  A  R  R  R  G  T  T  I  T  M  N  I  S  T  L  R  L  D  S  N  P  I  T  T  A  T  A  T  H  R  N  G  I  L  G  C  N  G  T  Y  S  Y  R  F  N  Q  F  Q  Q  R  K  K  T  A  S  I  V  V  C  S  T  K  P  L  A  S  V  V  D  H  Q  G  V  N  E  S  G  L  R  R  I  E  S  L  S  Q  V  S  G  V  L  G  C  Q  W  G  D  E  G  K  G  K  L  V  D  I  L  A  K  H  F  D  I  V  A  R  C  Q  :  G  G  A  N  A  G  H  T  I  Y  N  S  E  G  K  K  F  A  L  H  L  V  P  S  G  I  L  N  E  E  T  L  C  V  I  G  N  G  V  V  V  H  L  P  G  L  F  K  E  I  D  G  L  E  A  N  G  V  S  C  Q  G  R  I  L  V  S  D  R  A  H  L  L  F  D  F  H  Q  E  I  D  G  L  R  E  A  E  L  A  K  S  F  I  G  T  T  K  R  G  I  G  P  C  Y  S  S  K  V  I  R  N  G  L  R  V  S  D  L  R  H  M  D  T  F  P  Q  K  L  D  L  L  L  S  D  A  A  A  R  F  P  G  F  K  Y  G  P  D  M  L  R  E  E  V  E  R  Y  K  K  F  A  E  R  L  E  P  F  V  T  D  T  V  H  F  M  N  D  A  I  S  Q  K  K  K  I  L  V  E  G  G  Q  A  T  M  L  D  I  D  F  G  T  Y  P  F  V  T  S  S  S  P  S  A  G  G  I  C  T  G  L  G  I  A  P  K  V  V  G  D  L  V  G  V  :  V  K  A  Y  T  T  R  V  G  S  G  P  F  P  T  E  I  M  G  K  G  G  D  L  L  R  F  A  G  Q  E  F  G  T  T  T  G  R  P  R  R  C  G  W  L  D  I  V  A  L  K  F  C  C  Q  I  N  G  F  A  S  L  N  L  T  K  L  D  V  L  S  D  L  P  E  I  Q  L  G  V  T  Y  R  H  P  D  G  S  A  L  H  S  F  P  S  D  L  R  L  L  E  Q  I  K  :  V  E  Y  E  V  L  P  G  W  K  S  D  I  S  S  I  R  K  Y  S  D  L  P  K  A  A  R  E  Y  V  E  R  I  E  E  L  V  G  V  P  I  H  Y  I  G  I  G  P  G  R  D  A  L  I  Y  K  *  F  *  I  F  I  I  I  L  P  E  S  Y  S  S  N  C  W  *  T  L  D  *  A  C  S  N  I  M  N  Y  H  F  D  V  I  A  *  C  K  N  Y  V  S  V  V  F  K  A  R  N  F  V  R  P  P  K  E  </first_frame>
            <second_frame>  I  T  F  L  I  P  L  S  C  I  S  P  F  I  A  C  T  A  Q  P  H  A  A  A  A  L  P  L  P  *  T  S  Q  L  *  D  S  I  P  I  Q  S  L  R  Q  R  R  L  T  G  M  G  S  S  V  A  M  G  P  I  V  I  G  S  I  S  S  S  R  G  R  R  L  L  Q  L  S  F  V  R  Q  S  L  L  P  R  *  W  T  I  R  G  L  M  S  Q  D  *  D  E  L  S  H  S  V  R  Y  P  A  C  W  V  A  N  G  A  M  K  E  R  E  S  S  L  I  Y  W  L  N  I  S  T  L  L  L  V  V  R :   V  E  P  M  L  G  I  L  Y  T  I  L  R  G  R  S  L  L  C  T  L  S  L  L  G  F  S  T  R  K  L  C  V  L  L  V  M  E  L  W  C  I  Y  R  D  F  L  K  K  L  M  V  L  K  L  M  E  F  L  A  K  E  G  S  W  Y  L  I  V  H  T  C  Y  L  I  F  T  K  K  *  M  G  L  E  K  L  S  *  L  N  P  L  L  E  P  P  R  E  A  L  G  H  A  I  Q  A  R  L  L  E  M  A  *  E  *  V  I  *  G  I  W  T  H  S  P  K  S  L  I  F  Y  Y  Q  M  P  L  Q  D  S  Q  A  L  S  M  V  L  T  C  S  G  K  K  W  N  A  T  R  N  L  L  R  G  W  N  P  S  L  Q  I  P  C  T  S  *  M  M  L  Y  L  R  K  R  R  F  W  W  K  V  V  R  Q  Q  C  W  I  *  I  L  E  H  T  L  L  *  L  H  P  V  H  R  L  V  E  S  A  Q  V  L  A  L  L  P  K  L  L  V  I  L  L  V  W :   L  R  H  I  P  Q  E  L  V  L  V  L  F  Q  Q  K  S  W  A  K  V  V  T  F  F  V  L  L  G  R  S  L  A  Q  P  L  D  V  R  V  V  V  V  G  *  T  *  L  R  *  N  S  A  V  K  *  M  D  L  L  L  L  T  L  Q  N  *  T  C  C  Q  I  Y  Q  K  F  N  W  V  L  L  T  G  I  L  M  A  Q  H  Y  I  L  F  P  L  I  F  V  F  L  S  K  *  R :   W  S  M  K  F  C  L  G  G  R  V  I  F  L  P  S  G  S  I  L  T  C  L  R  L  H  A  S  M  *  K  G  *  R  S  L  L  G  Y  L  S  I  T  L  V  *  D  L  V  V  M  P  L  S  T  S  D  F  R  F  L  S  S  Y  C  Q  S  H  I  L  Q  I  V  G  K  P  *  T  K  L  V  V  T  S  *  I  I  I  L  M  L  L  L  N  V  K  I  M  S  L  L  S  L  K  L  E  I  L  L  D  L  P  R  K </second_frame>
            <third_frame>   *  H  F  L  F  L  S  L  A  Y  L  R  L  *  R  A  Q  R  N  R  T  P  P  R  H  Y  H  Y  H  E  H  L  N  S  K  T  R  F  Q  S  N  H  Y  G  N  G  D  S  P  E  W  D  P  R  L  Q  W  D  L  *  L  *  V  Q  S  V  P  A  E  E  E  D  C  F  N  C  R  L  F  D  K  A  S  C  L  G  S  G  P  S  G  G  *  *  V  R  T  E  T  N  *  V  T  Q  S  G  I  R  R  V  G  L  P  M  G  R  *  R  K  G  K  A  R  *  Y  T  G  *  T  F  R  H  C  C  S  L  S   : G  W  S  Q  C  W  A  Y  Y  I  Q  F  *  G  E  E  V  C  S  A  P  C  P  F  W  D  S  Q  R  G  N  S  V  C  Y  W  *  W  S  C  G  A  S  T  G  T  F  *  R  N  *  W  S  *  S  *  W  S  F  L  P  R  K  D  L  G  I  *  S  C  T  L  V  I  *  F  S  P  R  N  R  W  A  *  R  S  *  A  S  *  I  L  Y  W  N  H  Q  E  R  H  W  A  M  L  F  K  Q  G  Y  *  K  W  L  K  S  K  *  F  K  A  Y  G  H  I  P  P  K  A  *  S  F  I  I  R  C  R  C  K  I  P  R  L  *  V  W  S  *  H  A  Q  G  R  S  G  T  L  Q  E  I  C  *  E  V  G  T  L  R  Y  R  Y  R  A  L  H  E  *  C  Y  I  S  E  K  E  D  F  G  G  R  W  S  G  N  N  V  G  Y  R  F  W  N  I  P  F  C  D  F  I  Q  S  I  G  W  W  N  L  H  R  S  W  H  C  S  Q  S  C  W  *  S  C  W  C   : G  *  G  I  Y  H  K  S  W  F  W  S  F  S  N  R  N  H  G  Q  R  W  *  P  S  S  F  C  W  A  G  V  W  H  N  H  W  T  S  A  S  L  W  L  A  R  H  S  C  A  E  I  L  L  S  N  K  W  I  C  F  S  *  P  Y  K  T  R  R  A  V  R  S  T  R  N  S  I  G  C  Y  L  Q  A  S  *  W  L  S  I  T  F  F  S  L  *  S  S  S  S  *  A  N  K   : G  G  V  *  S  F  A  W  V  E  E  *  Y  F  F  H  Q  E  V  F  *  L  A  *  G  C  T  R  V  C  R  K  D  R  G  A  C  W  G  T  Y  P  L  H  W  Y  R  T  W  S  *  C  P  Y  L  Q  V  I  L  D  F  Y  H  H  I  A  R  V  I  F  F  K  L  L  V  N  L  R  L  S  L  *  *  H  H  E  L  S  F  *  C  Y  C  L  M  *  K  L  C  L  C  C  L  *  S  *  K  F  C  *  T  S  Q  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41537" stop="41124"/>
                    <exon start="40643" stop="39951"/>
                    <exon start="39641" stop="39330"/>
                    <exon start="38916" stop="38746"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNISYSSLLHISVYSVHSATARRRGTTITMNISTLRLDSNPITTATATHRNGILGCNGTYSYRFNQFQQRKKTASIVVCSTKPLASVVDHQGVNESGLRRIESLSQVSGVLGCQWGDEGKGKLVDILAKHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEETLCVIGNGVVVHLPGLFKEIDGLEANGVSCQGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTKRGIGPCYSSKVIRNGLRVSDLRHMDTFPQKLDLLLSDAAARFPGFKYGPDMLREEVERYKKFAERLEPFVTDTVHFMNDAISQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPKVVGDLVGVVKAYTTRVGSGPFPTEIMGKGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKFCCQINGFASLNLTKLDVLSDLPEIQLGVTYRHPDGSALHSFPSDLRLLEQIKVEYEVLPGWKSDISSIRKYSDLPKAAREYVERIEELVGVPIHYIGIGPGRDALIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41537" e_stop="41124"/>
            <exon e_start="40643" e_stop="39951"/>
            <exon e_start="39641" e_stop="39330"/>
            <exon e_start="38916" e_stop="38634"/>
            <exon e_start="33946" e_stop="33914"/>
            <exon e_start="33483" e_stop="33471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.929"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.974"/>
          <exon-intron don_prob="0.000" acc_prob="0.372" e_score="0.980"/>
          <exon-intron don_prob="0.909" acc_prob="0.011" e_score="0.697"/>
          <exon-only e_score="0.846"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41537" e_stop="41124" e_length="414"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="41123" i_stop="40644" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="40643" e_stop="39951" e_length="693"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="39641" e_stop="39330" e_length="312"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="38916" e_stop="38634" e_length="283"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.372">
            <gDNA_intron_boundary i_start="38633" i_stop="33947" i_length="4687"/>
          </intron>
          <exon e_serial="5" e_score="0.697">
            <gDNA_exon_boundary e_start="33946" e_stop="33914" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.909" acc_prob="0.011">
            <gDNA_intron_boundary i_start="33913" i_stop="33484" i_length="430"/>
          </intron>
          <exon e_serial="6" e_score="0.846">
            <gDNA_exon_boundary e_start="33483" e_stop="33471" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41537" stop="41124"/>
              <exon start="40643" stop="40443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41537" stop="41124"/>
              <exon start="40643" stop="40589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41531" stop="41124"/>
              <exon start="40643" stop="40453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41527" stop="41124"/>
              <exon start="40643" stop="40499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41510" stop="41124"/>
              <exon start="40643" stop="40378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41394" stop="41124"/>
              <exon start="40643" stop="40263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41124"/>
              <exon start="40643" stop="40257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41222" stop="41124"/>
              <exon start="40643" stop="39982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40463" stop="39951"/>
              <exon start="39641" stop="39392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40463" stop="39951"/>
              <exon start="39641" stop="39543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40452" stop="39951"/>
              <exon start="39641" stop="39429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40326" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40316" stop="39951"/>
              <exon start="39641" stop="39396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40288" stop="39951"/>
              <exon start="39641" stop="39330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40064" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39992" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38879" stop="38634"/>
              <exon start="33946" stop="33914"/>
              <exon start="33483" stop="33471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAACATTTCTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAG : GGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTG : GTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG : GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAAT : GATCAGAAACAACAAATTCAAAGAAATAAGAAA : GTAAAAAAAAAAA</gDNA_template>
            <first_frame> N  N  I  S  Y  S  S  L  L  H  I  S  V  Y  S  V  H  S  A  T  A  R  R  R  G  T  T  I  T  M  N  I  S  T  L  R  L  D  S  N  P  I  T  T  A  T  A  T  H  R  N  G  I  L  G  C  N  G  T  Y  S  Y  R  F  N  Q  F  Q  Q  R  K  K  T  A  S  I  V  V  C  S  T  K  P  L  A  S  V  V  D  H  Q  G  V  N  E  S  G  L  R  R  I  E  S  L  S  Q  V  S  G  V  L  G  C  Q  W  G  D  E  G  K  G  K  L  V  D  I  L  A  K  H  F  D  I  V  A  R  C  Q  :  G  G  A  N  A  G  H  T  I  Y  N  S  E  G  K  K  F  A  L  H  L  V  P  S  G  I  L  N  E  E  T  L  C  V  I  G  N  G  V  V  V  H  L  P  G  L  F  K  E  I  D  G  L  E  A  N  G  V  S  C  Q  G  R  I  L  V  S  D  R  A  H  L  L  F  D  F  H  Q  E  I  D  G  L  R  E  A  E  L  A  K  S  F  I  G  T  T  K  R  G  I  G  P  C  Y  S  S  K  V  I  R  N  G  L  R  V  S  D  L  R  H  M  D  T  F  P  Q  K  L  D  L  L  L  S  D  A  A  A  R  F  P  G  F  K  Y  G  P  D  M  L  R  E  E  V  E  R  Y  K  K  F  A  E  R  L  E  P  F  V  T  D  T  V  H  F  M  N  D  A  I  S  Q  K  K  K  I  L  V  E  G  G  Q  A  T  M  L  D  I  D  F  G  T  Y  P  F  V  T  S  S  S  P  S  A  G  G  I  C  T  G  L  G  I  A  P  K  V  V  G  D  L  V  G  V  :  V  K  A  Y  T  T  R  V  G  S  G  P  F  P  T  E  I  M  G  K  G  G  D  L  L  R  F  A  G  Q  E  F  G  T  T  T  G  R  P  R  R  C  G  W  L  D  I  V  A  L  K  F  C  C  Q  I  N  G  F  A  S  L  N  L  T  K  L  D  V  L  S  D  L  P  E  I  Q  L  G  V  T  Y  R  H  P  D  G  S  A  L  H  S  F  P  S  D  L  R  L  L  E  Q  I  K  :  V  E  Y  E  V  L  P  G  W  K  S  D  I  S  S  I  R  K  Y  S  D  L  P  K  A  A  R  E  Y  V  E  R  I  E  E  L  V  G  V  P  I  H  Y  I  G  I  G  P  G  R  D  A  L  I  Y  K  *  F  *  I  F  I  I  I  L  P  E  S  Y  S  S  N  C  W  *  T  L  D  *  A  C  S  N  I  M  N  Y  H  F  D  V  I  A  *   : *  S  E  T  T  N  S  K  K  *  E   : S  K  K  K   </first_frame>
            <second_frame>  I  T  F  L  I  P  L  S  C  I  S  P  F  I  A  C  T  A  Q  P  H  A  A  A  A  L  P  L  P  *  T  S  Q  L  *  D  S  I  P  I  Q  S  L  R  Q  R  R  L  T  G  M  G  S  S  V  A  M  G  P  I  V  I  G  S  I  S  S  S  R  G  R  R  L  L  Q  L  S  F  V  R  Q  S  L  L  P  R  *  W  T  I  R  G  L  M  S  Q  D  *  D  E  L  S  H  S  V  R  Y  P  A  C  W  V  A  N  G  A  M  K  E  R  E  S  S  L  I  Y  W  L  N  I  S  T  L  L  L  V  V  R :   V  E  P  M  L  G  I  L  Y  T  I  L  R  G  R  S  L  L  C  T  L  S  L  L  G  F  S  T  R  K  L  C  V  L  L  V  M  E  L  W  C  I  Y  R  D  F  L  K  K  L  M  V  L  K  L  M  E  F  L  A  K  E  G  S  W  Y  L  I  V  H  T  C  Y  L  I  F  T  K  K  *  M  G  L  E  K  L  S  *  L  N  P  L  L  E  P  P  R  E  A  L  G  H  A  I  Q  A  R  L  L  E  M  A  *  E  *  V  I  *  G  I  W  T  H  S  P  K  S  L  I  F  Y  Y  Q  M  P  L  Q  D  S  Q  A  L  S  M  V  L  T  C  S  G  K  K  W  N  A  T  R  N  L  L  R  G  W  N  P  S  L  Q  I  P  C  T  S  *  M  M  L  Y  L  R  K  R  R  F  W  W  K  V  V  R  Q  Q  C  W  I  *  I  L  E  H  T  L  L  *  L  H  P  V  H  R  L  V  E  S  A  Q  V  L  A  L  L  P  K  L  L  V  I  L  L  V  W :   L  R  H  I  P  Q  E  L  V  L  V  L  F  Q  Q  K  S  W  A  K  V  V  T  F  F  V  L  L  G  R  S  L  A  Q  P  L  D  V  R  V  V  V  V  G  *  T  *  L  R  *  N  S  A  V  K  *  M  D  L  L  L  L  T  L  Q  N  *  T  C  C  Q  I  Y  Q  K  F  N  W  V  L  L  T  G  I  L  M  A  Q  H  Y  I  L  F  P  L  I  F  V  F  L  S  K  *  R :   W  S  M  K  F  C  L  G  G  R  V  I  F  L  P  S  G  S  I  L  T  C  L  R  L  H  A  S  M  *  K  G  *  R  S  L  L  G  Y  L  S  I  T  L  V  *  D  L  V  V  M  P  L  S  T  S  D  F  R  F  L  S  S  Y  C  Q  S  H  I  L  Q  I  V  G  K  P  *  T  K  L  V  V  T  S  *  I  I  I  L  M  L  L  L  N  :  D  Q  K  Q  Q  I  Q  R  N  K  K  :  V  K  K  K  </second_frame>
            <third_frame>   *  H  F  L  F  L  S  L  A  Y  L  R  L  *  R  A  Q  R  N  R  T  P  P  R  H  Y  H  Y  H  E  H  L  N  S  K  T  R  F  Q  S  N  H  Y  G  N  G  D  S  P  E  W  D  P  R  L  Q  W  D  L  *  L  *  V  Q  S  V  P  A  E  E  E  D  C  F  N  C  R  L  F  D  K  A  S  C  L  G  S  G  P  S  G  G  *  *  V  R  T  E  T  N  *  V  T  Q  S  G  I  R  R  V  G  L  P  M  G  R  *  R  K  G  K  A  R  *  Y  T  G  *  T  F  R  H  C  C  S  L  S   : G  W  S  Q  C  W  A  Y  Y  I  Q  F  *  G  E  E  V  C  S  A  P  C  P  F  W  D  S  Q  R  G  N  S  V  C  Y  W  *  W  S  C  G  A  S  T  G  T  F  *  R  N  *  W  S  *  S  *  W  S  F  L  P  R  K  D  L  G  I  *  S  C  T  L  V  I  *  F  S  P  R  N  R  W  A  *  R  S  *  A  S  *  I  L  Y  W  N  H  Q  E  R  H  W  A  M  L  F  K  Q  G  Y  *  K  W  L  K  S  K  *  F  K  A  Y  G  H  I  P  P  K  A  *  S  F  I  I  R  C  R  C  K  I  P  R  L  *  V  W  S  *  H  A  Q  G  R  S  G  T  L  Q  E  I  C  *  E  V  G  T  L  R  Y  R  Y  R  A  L  H  E  *  C  Y  I  S  E  K  E  D  F  G  G  R  W  S  G  N  N  V  G  Y  R  F  W  N  I  P  F  C  D  F  I  Q  S  I  G  W  W  N  L  H  R  S  W  H  C  S  Q  S  C  W  *  S  C  W  C   : G  *  G  I  Y  H  K  S  W  F  W  S  F  S  N  R  N  H  G  Q  R  W  *  P  S  S  F  C  W  A  G  V  W  H  N  H  W  T  S  A  S  L  W  L  A  R  H  S  C  A  E  I  L  L  S  N  K  W  I  C  F  S  *  P  Y  K  T  R  R  A  V  R  S  T  R  N  S  I  G  C  Y  L  Q  A  S  *  W  L  S  I  T  F  F  S  L  *  S  S  S  S  *  A  N  K   : G  G  V  *  S  F  A  W  V  E  E  *  Y  F  F  H  Q  E  V  F  *  L  A  *  G  C  T  R  V  C  R  K  D  R  G  A  C  W  G  T  Y  P  L  H  W  Y  R  T  W  S  *  C  P  Y  L  Q  V  I  L  D  F  Y  H  H  I  A  R  V  I  F  F  K  L  L  V  N  L  R  L  S  L  *  *  H  H  E  L  S  F  *  C  Y  C  L  M :   I  R  N  N  K  F  K  E  I  R  K :   *  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41537" stop="41124"/>
                    <exon start="40643" stop="39951"/>
                    <exon start="39641" stop="39330"/>
                    <exon start="38916" stop="38746"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNISYSSLLHISVYSVHSATARRRGTTITMNISTLRLDSNPITTATATHRNGILGCNGTYSYRFNQFQQRKKTASIVVCSTKPLASVVDHQGVNESGLRRIESLSQVSGVLGCQWGDEGKGKLVDILAKHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEETLCVIGNGVVVHLPGLFKEIDGLEANGVSCQGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTKRGIGPCYSSKVIRNGLRVSDLRHMDTFPQKLDLLLSDAAARFPGFKYGPDMLREEVERYKKFAERLEPFVTDTVHFMNDAISQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPKVVGDLVGVVKAYTTRVGSGPFPTEIMGKGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKFCCQINGFASLNLTKLDVLSDLPEIQLGVTYRHPDGSALHSFPSDLRLLEQIKVEYEVLPGWKSDISSIRKYSDLPKAAREYVERIEELVGVPIHYIGIGPGRDALIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40698" e_stop="39951"/>
            <exon e_start="39641" e_stop="39330"/>
            <exon e_start="38916" e_stop="38574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.961"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="40698" e_stop="39951" e_length="748"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39950" i_stop="39642" i_length="309"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39641" e_stop="39330" e_length="312"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39329" i_stop="38917" i_length="413"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="38916" e_stop="38574" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40698" stop="40055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40698" stop="40401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40694" stop="39979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40463" stop="39951"/>
              <exon start="39641" stop="39392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40463" stop="39951"/>
              <exon start="39641" stop="39543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40452" stop="39951"/>
              <exon start="39641" stop="39429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40326" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40316" stop="39951"/>
              <exon start="39641" stop="39396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40288" stop="39951"/>
              <exon start="39641" stop="39330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40064" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40046" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40030" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450579" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39992" stop="39951"/>
              <exon start="39641" stop="39330"/>
              <exon start="38916" stop="38702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39566" stop="39330"/>
              <exon start="38916" stop="38575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284434" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38887" stop="38615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTCAAGCAAGGTTATTAGAAATGGCTTAAGAGTAAGTGATTTAAGGCATATGGACACATTCCCCCAAAAGCTTGATCTTTTATTATCAGATGCCGCTGCAAGATTCCCAGGCTTTAAGTATGGTCCTGACATGCTCAGGGAAGAAGTGGAACGCTACAAGAAATTTGCTGAGAGGTTGGAACCCTTCGTTACAGATACCGTGCACTTCATGAATGATGCTATATCTCAGAAAAAGAAGATTTTGGTGGAAGGTGGTCAGGCAACAATGTTGGATATAGATTTTGGAACATACCCTTTTGTGACTTCATCCAGTCCATCGGCTGGTGGAATCTGCACAGGTCTTGGCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTG : GTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG : GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAGGAAA</gDNA_template>
            <first_frame> D  K  L  V  S  Y  D  S  *  A  F  Q  *  R  F  L  L  S  G  W  S  Q  C  W  A  Y  Y  I  Q  F  *  G  E  E  V  C  S  A  P  C  P  F  W  D  S  Q  R  G  N  S  V  C  Y  W  *  W  S  C  G  A  S  T  G  T  F  *  R  N  *  W  S  *  S  *  W  S  F  L  P  R  K  D  L  G  I  *  S  C  T  L  V  I  *  F  S  P  R  N  R  W  A  *  R  S  *  A  S  *  I  L  Y  W  N  H  Q  E  R  H  W  A  M  L  F  K  Q  G  Y  *  K  W  L  K  S  K  *  F  K  A  Y  G  H  I  P  P  K  A  *  S  F  I  I  R  C  R  C  K  I  P  R  L  *  V  W  S  *  H  A  Q  G  R  S  G  T  L  Q  E  I  C  *  E  V  G  T  L  R  Y  R  Y  R  A  L  H  E  *  C  Y  I  S  E  K  E  D  F  G  G  R  W  S  G  N  N  V  G  Y  R  F  W  N  I  P  F  C  D  F  I  Q  S  I  G  W  W  N  L  H  R  S  W  H  C  S  Q  S  C  W  *  S  C  W  C   : G  *  G  I  Y  H  K  S  W  F  W  S  F  S  N  R  N  H  G  Q  R  W  *  P  S  S  F  C  W  A  G  V  W  H  N  H  W  T  S  A  S  L  W  L  A  R  H  S  C  A  E  I  L  L  S  N  K  W  I  C  F  S  *  P  Y  K  T  R  R  A  V  R  S  T  R  N  S  I  G  C  Y  L  Q  A  S  *  W  L  S  I  T  F  F  S  L  *  S  S  S  S  *  A  N  K   : G  G  V  *  S  F  A  W  V  E  E  *  Y  F  F  H  Q  E  V  F  *  L  A  *  G  C  T  R  V  C  R  K  D  R  G  A  C  W  G  T  Y  P  L  H  W  Y  R  T  W  S  *  C  P  Y  L  Q  V  I  L  D  F  Y  H  H  I  A  R  V  I  F  F  K  L  L  V  N  L  R  L  S  L  *  *  H  H  E  L  S  F  *  C  Y  C  L  M  *  K  L  C  L  C  C  L  *  S  *  K  F  C  *  T  S  Q  G   </first_frame>
            <second_frame>  I  N  L  L  A  M  I  A  K  L  F  N  N  V  S  C  C  Q  G  G  A  N  A  G  H  T  I  Y  N  S  E  G  K  K  F  A  L  H  L  V  P  S  G  I  L  N  E  E  T  L  C  V  I  G  N  G  V  V  V  H  L  P  G  L  F  K  E  I  D  G  L  E  A  N  G  V  S  C  Q  G  R  I  L  V  S  D  R  A  H  L  L  F  D  F  H  Q  E  I  D  G  L  R  E  A  E  L  A  K  S  F  I  G  T  T  K  R  G  I  G  P  C  Y  S  S  K  V  I  R  N  G  L  R  V  S  D  L  R  H  M  D  T  F  P  Q  K  L  D  L  L  L  S  D  A  A  A  R  F  P  G  F  K  Y  G  P  D  M  L  R  E  E  V  E  R  Y  K  K  F  A  E  R  L  E  P  F  V  T  D  T  V  H  F  M  N  D  A  I  S  Q  K  K  K  I  L  V  E  G  G  Q  A  T  M  L  D  I  D  F  G  T  Y  P  F  V  T  S  S  S  P  S  A  G  G  I  C  T  G  L  G  I  A  P  K  V  V  G  D  L  V  G  V  :  V  K  A  Y  T  T  R  V  G  S  G  P  F  P  T  E  I  M  G  K  G  G  D  L  L  R  F  A  G  Q  E  F  G  T  T  T  G  R  P  R  R  C  G  W  L  D  I  V  A  L  K  F  C  C  Q  I  N  G  F  A  S  L  N  L  T  K  L  D  V  L  S  D  L  P  E  I  Q  L  G  V  T  Y  R  H  P  D  G  S  A  L  H  S  F  P  S  D  L  R  L  L  E  Q  I  K  :  V  E  Y  E  V  L  P  G  W  K  S  D  I  S  S  I  R  K  Y  S  D  L  P  K  A  A  R  E  Y  V  E  R  I  E  E  L  V  G  V  P  I  H  Y  I  G  I  G  P  G  R  D  A  L  I  Y  K  *  F  *  I  F  I  I  I  L  P  E  S  Y  S  S  N  C  W  *  T  L  D  *  A  C  S  N  I  M  N  Y  H  F  D  V  I  A  *  C  K  N  Y  V  S  V  V  F  K  A  R  N  F  V  R  P  P  K  E  </second_frame>
            <third_frame>   *  T  C  *  L  *  *  L  S  F  S  I  T  F  L  A  V  R  V  E  P  M  L  G  I  L  Y  T  I  L  R  G  R  S  L  L  C  T  L  S  L  L  G  F  S  T  R  K  L  C  V  L  L  V  M  E  L  W  C  I  Y  R  D  F  L  K  K  L  M  V  L  K  L  M  E  F  L  A  K  E  G  S  W  Y  L  I  V  H  T  C  Y  L  I  F  T  K  K  *  M  G  L  E  K  L  S  *  L  N  P  L  L  E  P  P  R  E  A  L  G  H  A  I  Q  A  R  L  L  E  M  A  *  E  *  V  I  *  G  I  W  T  H  S  P  K  S  L  I  F  Y  Y  Q  M  P  L  Q  D  S  Q  A  L  S  M  V  L  T  C  S  G  K  K  W  N  A  T  R  N  L  L  R  G  W  N  P  S  L  Q  I  P  C  T  S  *  M  M  L  Y  L  R  K  R  R  F  W  W  K  V  V  R  Q  Q  C  W  I  *  I  L  E  H  T  L  L  *  L  H  P  V  H  R  L  V  E  S  A  Q  V  L  A  L  L  P  K  L  L  V  I  L  L  V  W :   L  R  H  I  P  Q  E  L  V  L  V  L  F  Q  Q  K  S  W  A  K  V  V  T  F  F  V  L  L  G  R  S  L  A  Q  P  L  D  V  R  V  V  V  V  G  *  T  *  L  R  *  N  S  A  V  K  *  M  D  L  L  L  L  T  L  Q  N  *  T  C  C  Q  I  Y  Q  K  F  N  W  V  L  L  T  G  I  L  M  A  Q  H  Y  I  L  F  P  L  I  F  V  F  L  S  K  *  R :   W  S  M  K  F  C  L  G  G  R  V  I  F  L  P  S  G  S  I  L  T  C  L  R  L  H  A  S  M  *  K  G  *  R  S  L  L  G  Y  L  S  I  T  L  V  *  D  L  V  V  M  P  L  S  T  S  D  F  R  F  L  S  S  Y  C  Q  S  H  I  L  Q  I  V  G  K  P  *  T  K  L  V  V  T  S  *  I  I  I  L  M  L  L  L  N  V  K  I  M  S  L  L  S  L  K  L  E  I  L  L  D  L  P  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40697" stop="39951"/>
                    <exon start="39641" stop="39330"/>
                    <exon start="38916" stop="38746"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1227</number_coding_nucleotides>
                  <number_encoded_amino_acids>409</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLLAMIAKLFNNVSCCQGGANAGHTIYNSEGKKFALHLVPSGILNEETLCVIGNGVVVHLPGLFKEIDGLEANGVSCQGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTKRGIGPCYSSKVIRNGLRVSDLRHMDTFPQKLDLLLSDAAARFPGFKYGPDMLREEVERYKKFAERLEPFVTDTVHFMNDAISQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPKVVGDLVGVVKAYTTRVGSGPFPTEIMGKGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKFCCQINGFASLNLTKLDVLSDLPEIQLGVTYRHPDGSALHSFPSDLRLLEQIKVEYEVLPGWKSDISSIRKYSDLPKAAREYVERIEELVGVPIHYIGIGPGRDALIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="43829" PGL_stop="44848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43829" e_stop="43845"/>
            <exon e_start="44180" e_stop="44191"/>
            <exon e_start="44438" e_stop="44848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.141" acc_prob="0.874" e_score="0.588"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.588">
            <gDNA_exon_boundary e_start="43829" e_stop="43845" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.141" acc_prob="0.874">
            <gDNA_intron_boundary i_start="43846" i_stop="44179" i_length="334"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="44180" e_stop="44191" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44192" i_stop="44437" i_length="246"/>
          </intron>
          <exon e_serial="3" e_score="0.917">
            <gDNA_exon_boundary e_start="44438" e_stop="44848" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43829" stop="43845"/>
              <exon start="44180" stop="44191"/>
              <exon start="44438" stop="44848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTCTCAAGTAACAT : GTTTTCTTTTTG : TTGTCATTTCACAATTATCATATTGCTGCGTTTACAGCATCCAACGTTTCATTAGAACTGAACAAAACAGTAAGCTCAAACTTCAAGTCTACGCTTAAAAGTTTTAACATTTATTTCCCAACTTTCTAAAAACACAAACTATAAACAAGGAAAACTATCCCCATTTATCGAAGCCCTAATTTGACAATCCAAAAAAGGGCGGAATTCAAAACCATACCCGAGCAGATCCACATATTATTCCGCATCGGCGGATTCAAGTTCGAGGCGTTTTAGGGCTTCTTGGTGGGCCCAAGTTTCAAGGGTGAGATCGGGCTTGGCATTGAGTCCCACACCCAGGATGACGATGGTGAAGAAGCTGGTGATGTAGCAAGGGAGTTCCCAATCCTCCCATTTACGGGACTGTCCAGGCGG</gDNA_template>
            <first_frame> Q  F  S  S  N  M :   F  S  F  C :   C  H  F  T  I  I  I  L  L  R  L  Q  H  P  T  F  H  *  N  *  T  K  Q  *  A  Q  T  S  S  L  R  L  K  V  L  T  F  I  S  Q  L  S  K  N  T  N  Y  K  Q  G  K  L  S  P  F  I  E  A  L  I  *  Q  S  K  K  G  R  N  S  K  P  Y  P  S  R  S  T  Y  Y  S  A  S  A  D  S  S  S  R  R  F  R  A  S  W  W  A  Q  V  S  R  V  R  S  G  L  A  L  S  P  T  P  R  M  T  M  V  K  K  L  V  M  *  Q  G  S  S  Q  S  S  H  L  R  D  C  P  G   </first_frame>
            <second_frame>  N  S  Q  V  T   : C  F  L  F   : V  V  I  S  Q  L  S  Y  C  C  V  Y  S  I  Q  R  F  I  R  T  E  Q  N  S  K  L  K  L  Q  V  Y  A  *  K  F  *  H  L  F  P  N  F  L  K  T  Q  T  I  N  K  E  N  Y  P  H  L  S  K  P  *  F  D  N  P  K  K  G  G  I  Q  N  H  T  R  A  D  P  H  I  I  P  H  R  R  I  Q  V  R  G  V  L  G  L  L  G  G  P  K  F  Q  G  *  D  R  A  W  H  *  V  P  H  P  G  *  R  W  *  R  S  W  *  C  S  K  G  V  P  N  P  P  I  Y  G  T  V  Q  A  </second_frame>
            <third_frame>   I  L  K  *  H  :  V  F  F  L  :  L  S  F  H  N  Y  H  I  A  A  F  T  A  S  N  V  S  L  E  L  N  K  T  V  S  S  N  F  K  S  T  L  K  S  F  N  I  Y  F  P  T  F  *  K  H  K  L  *  T  R  K  T  I  P  I  Y  R  S  P  N  L  T  I  Q  K  R  A  E  F  K  T  I  P  E  Q  I  H  I  L  F  R  I  G  G  F  K  F  E  A  F  *  G  F  L  V  G  P  S  F  K  G  E  I  G  L  G  I  E  S  H  T  Q  D  D  D  G  E  E  A  G  D  V  A  R  E  F  P  I  L  P  F  T  G  L  S  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0106H06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44429" e_stop="44646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="44429" e_stop="44646" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCAACCATTGTCATTTCACAATTATCATATTGCTGCGTTTACAGCATCCAACGTTTCATTAGAACTGAACAAAACAGTAAGCTCAAACTTCAAGTCTACGCTTAAAAGTTTTAACATTTATTTCCCAACTTTCTAAAAACACAAACTATAAACAAGGAAAACTATCCCCATTTATCGAAGCCCTAATTTGACAATCCAAAAAAGGGCGGAATTCAA</gDNA_template>
            <first_frame> C  Q  P  L  S  F  H  N  Y  H  I  A  A  F  T  A  S  N  V  S  L  E  L  N  K  T  V  S  S  N  F  K  S  T  L  K  S  F  N  I  Y  F  P  T  F  *  K  H  K  L  *  T  R  K  T  I  P  I  Y  R  S  P  N  L  T  I  Q  K  R  A  E  F   </first_frame>
            <second_frame>  V  N  H  C  H  F  T  I  I  I  L  L  R  L  Q  H  P  T  F  H  *  N  *  T  K  Q  *  A  Q  T  S  S  L  R  L  K  V  L  T  F  I  S  Q  L  S  K  N  T  N  Y  K  Q  G  K  L  S  P  F  I  E  A  L  I  *  Q  S  K  K  G  R  N  S  </second_frame>
            <third_frame>   S  T  I  V  I  S  Q  L  S  Y  C  C  V  Y  S  I  Q  R  F  I  R  T  E  Q  N  S  K  L  K  L  Q  V  Y  A  *  K  F  *  H  L  F  P  N  F  L  K  T  Q  T  I  N  K  E  N  Y  P  H  L  S  K  P  *  F  D  N  P  K  K  G  G  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0106H06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="45029" PGL_stop="44357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45029" e_stop="44357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="45029" e_stop="44357" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45029" stop="44424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45024" stop="44417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45016" stop="44417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45015" stop="44505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45012" stop="44391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45012" stop="44413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45012" stop="44443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45012" stop="44444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45012" stop="44458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45011" stop="44531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45009" stop="44436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45009" stop="44438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45009" stop="44445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45008" stop="44441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45002" stop="44404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44986" stop="44453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44976" stop="44511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44976" stop="44543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44976" stop="44544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44976" stop="44545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44948" stop="44516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44936" stop="44534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44925" stop="44432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44917" stop="44393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44913" stop="44427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44891" stop="44357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44872" stop="44410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44861" stop="44424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44840" stop="44413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44832" stop="44611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44818" stop="44398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44778" stop="44413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44645" stop="44395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACTTTCGTTCATCTGTCCAACGATGCCGTCCGTGAAACCCTTAGCGACCGCCGCCGGCGCGCTACGAGCCCGTGTTAGTTCGGGCCTCCGCACCAGAGGAGGACACGGGCCGAATCCATTCACCACTGCGGGCCACCAGGATCGACCTAACGGATACCTATTCAACCGTGTTCCACCACCGCCTGGACAGTCCCGTAAATGGGAGGATTGGGAACTCCCTTGCTACATCACCAGCTTCTTCACCATCGTCATCCTGGGTGTGGGACTCAATGCCAAGCCCGATCTCACCCTTGAAACTTGGGCCCACCAAGAAGCCCTAAAACGCCTCGAACTTGAATCCGCCGATGCGGAATAATATGTGGATCTGCTCGGGTATGGTTTTGAATTCCGCCCTTTTTTGGATTGTCAAATTAGGGCTTCGATAAATGGGGATAGTTTTCCTTGTTTATAGTTTGTGTTTTTAGAAAGTTGGGAAATAAATGTTAAAACTTTTAAGCGTAGACTTGAAGTTTGAGCTTACTGTTTTGTTCAGTTCTAATGAAACGTTGGATGCTGTAAACGCAGCAATATGATAATTGTGAAATGACAATGGTTGACAATATTATTCTTTTTCAGTTTCACTCGGGAATGCATATTGTTCGCTTGTAATTGTGTTTAATAGTATGTTATG</gDNA_template>
            <first_frame> H  T  F  V  H  L  S  N  D  A  V  R  E  T  L  S  D  R  R  R  R  A  T  S  P  C  *  F  G  P  P  H  Q  R  R  T  R  A  E  S  I  H  H  C  G  P  P  G  S  T  *  R  I  P  I  Q  P  C  S  T  T  A  W  T  V  P  *  M  G  G  L  G  T  P  L  L  H  H  Q  L  L  H  H  R  H  P  G  C  G  T  Q  C  Q  A  R  S  H  P  *  N  L  G  P  P  R  S  P  K  T  P  R  T  *  I  R  R  C  G  I  I  C  G  S  A  R  V  W  F  *  I  P  P  F  F  G  L  S  N  *  G  F  D  K  W  G  *  F  S  L  F  I  V  C  V  F  R  K  L  G  N  K  C  *  N  F  *  A  *  T  *  S  L  S  L  L  F  C  S  V  L  M  K  R  W  M  L  *  T  Q  Q  Y  D  N  C  E  M  T  M  V  D  N  I  I  L  F  Q  F  H  S  G  M  H  I  V  R  L  *  L  C  L  I  V  C  Y  </first_frame>
            <second_frame>  T  L  S  F  I  C  P  T  M  P  S  V  K  P  L  A  T  A  A  G  A  L  R  A  R  V  S  S  G  L  R  T  R  G  G  H  G  P  N  P  F  T  T  A  G  H  Q  D  R  P  N  G  Y  L  F  N  R  V  P  P  P  P  G  Q  S  R  K  W  E  D  W  E  L  P  C  Y  I  T  S  F  F  T  I  V  I  L  G  V  G  L  N  A  K  P  D  L  T  L  E  T  W  A  H  Q  E  A  L  K  R  L  E  L  E  S  A  D  A  E  *  Y  V  D  L  L  G  Y  G  F  E  F  R  P  F  L  D  C  Q  I  R  A  S  I  N  G  D  S  F  P  C  L  *  F  V  F  L  E  S  W  E  I  N  V  K  T  F  K  R  R  L  E  V  *  A  Y  C  F  V  Q  F  *  *  N  V  G  C  C  K  R  S  N  M  I  I  V  K  *  Q  W  L  T  I  L  F  F  F  S  F  T  R  E  C  I  L  F  A  C  N  C  V  *  *  Y  V  M </second_frame>
            <third_frame>   H  F  R  S  S  V  Q  R  C  R  P  *  N  P  *  R  P  P  P  A  R  Y  E  P  V  L  V  R  A  S  A  P  E  E  D  T  G  R  I  H  S  P  L  R  A  T  R  I  D  L  T  D  T  Y  S  T  V  F  H  H  R  L  D  S  P  V  N  G  R  I  G  N  S  L  A  T  S  P  A  S  S  P  S  S  S  W  V  W  D  S  M  P  S  P  I  S  P  L  K  L  G  P  T  K  K  P  *  N  A  S  N  L  N  P  P  M  R  N  N  M  W  I  C  S  G  M  V  L  N  S  A  L  F  W  I  V  K  L  G  L  R  *  M  G  I  V  F  L  V  Y  S  L  C  F  *  K  V  G  K  *  M  L  K  L  L  S  V  D  L  K  F  E  L  T  V  L  F  S  S  N  E  T  L  D  A  V  N  A  A  I  *  *  L  *  N  D  N  G  *  Q  Y  Y  S  F  S  V  S  L  G  N  A  Y  C  S  L  V  I  V  F  N  S  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45028" stop="44672"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSFICPTMPSVKPLATAAGALRARVSSGLRTRGGHGPNPFTTAGHQDRPNGYLFNRVPPPPGQSRKWEDWELPCYITSFFTIVILGVGLNAKPDLTLETWAHQEALKRLELESADAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44982" stop="44707"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPPPARYEPVLVRASAPEEDTGRIHSPLRATRIDLTDTYSTVFHHRLDSPVNGRIGNSLATSPASSPSSSWVWDSMPSPISPLKLGPTKKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46470" PGL_stop="45926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46470" e_stop="45926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="46470" e_stop="45926" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46470" stop="45926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGACCAGTTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATTGTGTCCCCCAGCTGCTTGATGAAATTTCAGTGAAGTATGGATTTTTACCAGATAAAGTGTCGTACGATATACTAATTAGGTCATATTGTGAAATGAGATCGTCGAAAATGGCAATAAAAATACTCAAGGTGATAGAGGAGAAAAGTGTGGAGATTACAACGATTACTTTCACTACCATACTTCATTCATTCTACAAGAAAGGGAAGAATGATGAGGCGGAGAAGGTATGGAACGAGATGGTGAACAAAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATCATAAACATTCAGGGGGGTGATTTGGAGGGCGTGAAAGCTTTAATTGAGGAAATGACGATGTTGGATTGAAACCTGATACGACTAGCTACAATTACTTGATGACTTGTTATTGTAACAATGAATTGATGGACGAGGCACAAATAGTTTATGATGATCTGG</gDNA_template>
            <first_frame> S  K  F  I  I  R  W  M  I  *  A  P  P  D  Q  L  F  P  S  M  C  F  Y  Q  L  A  C  A  Q  N  Y  M  I  V  S  P  S  C  L  M  K  F  Q  *  S  M  D  F  Y  Q  I  K  C  R  T  I  Y  *  L  G  H  I  V  K  *  D  R  R  K  W  Q  *  K  Y  S  R  *  *  R  R  K  V  W  R  L  Q  R  L  L  S  L  P  Y  F  I  H  S  T  R  K  G  R  M  M  R  R  R  R  Y  G  T  R  W  *  T  K  G  V  V  Q  M  L  V  H  T  M  *  R  S  *  T  F  R  G  V  I  W  R  A  *  K  L  *  L  R  K  *  R  C  W  I  E  T  *  Y  D  *  L  Q  L  L  D  D  L  L  L  *  Q  *  I  D  G  R  G  T  N  S  L  *  *  S   </first_frame>
            <second_frame>  Q  N  L  S  S  D  G  *  F  R  H  P  Q  T  S  Y  F  L  Q  C  A  F  I  S  L  R  A  L  K  T  I  *  L  C  P  P  A  A  *  *  N  F  S  E  V  W  I  F  T  R  *  S  V  V  R  Y  T  N  *  V  I  L  *  N  E  I  V  E  N  G  N  K  N  T  Q  G  D  R  G  E  K  C  G  D  Y  N  D  Y  F  H  Y  H  T  S  F  I  L  Q  E  R  E  E  *  *  G  G  E  G  M  E  R  D  G  E  Q  R  V  W  S  R  C  W  C  I  Q  C  E  D  H  K  H  S  G  G  *  F  G  G  R  E  S  F  N  *  G  N  D  D  V  G  L  K  P  D  T  T  S  Y  N  Y  L  M  T  C  Y  C  N  N  E  L  M  D  E  A  Q  I  V  Y  D  D  L  </second_frame>
            <third_frame>   K  I  Y  H  Q  M  D  D  L  G  T  P  R  P  V  I  S  F  N  V  L  L  S  A  C  V  R  S  K  L  Y  D  C  V  P  Q  L  L  D  E  I  S  V  K  Y  G  F  L  P  D  K  V  S  Y  D  I  L  I  R  S  Y  C  E  M  R  S  S  K  M  A  I  K  I  L  K  V  I  E  E  K  S  V  E  I  T  T  I  T  F  T  T  I  L  H  S  F  Y  K  K  G  K  N  D  E  A  E  K  V  W  N  E  M  V  N  K  G  C  G  P  D  V  G  A  Y  N  V  K  I  I  N  I  Q  G  G  D  L  E  G  V  K  A  L  I  E  E  M  T  M  L  D  *  N  L  I  R  L  A  T  I  T  *  *  L  V  I  V  T  M  N  *  W  T  R  H  K  *  F  M  M  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46468" stop="46016"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIYHQMDDLGTPRPVISFNVLLSACVRSKLYDCVPQLLDEISVKYGFLPDKVSYDILIRSYCEMRSSKMAIKILKVIEEKSVEITTITFTTILHSFYKKGKNDEAEKVWNEMVNKGCGPDVGAYNVKIINIQGGDLEGVKALIEEMTMLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="47932" PGL_stop="61445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47932" e_stop="48308"/>
            <exon e_start="48398" e_stop="48466"/>
            <exon e_start="48606" e_stop="48713"/>
            <exon e_start="49621" e_stop="49692"/>
            <exon e_start="50320" e_stop="50478"/>
            <exon e_start="51072" e_stop="51107"/>
            <exon e_start="51363" e_stop="51469"/>
            <exon e_start="52480" e_stop="52551"/>
            <exon e_start="54911" e_stop="54959"/>
            <exon e_start="55092" e_stop="55684"/>
            <exon e_start="56947" e_stop="57129"/>
            <exon e_start="57203" e_stop="57323"/>
            <exon e_start="60900" e_stop="61445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.978"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="0.982" acc_prob="0.665" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.972"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.990" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.982" e_score="0.981"/>
          <exon-intron don_prob="0.978" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.958" e_score="0.983"/>
          <exon-intron don_prob="0.978" acc_prob="0.876" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.983"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="47932" e_stop="48308" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="48309" i_stop="48397" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="48398" e_stop="48466" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48467" i_stop="48605" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48606" e_stop="48713" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.665">
            <gDNA_intron_boundary i_start="48714" i_stop="49620" i_length="907"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="49621" e_stop="49692" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49693" i_stop="50319" i_length="627"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="50320" e_stop="50478" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50479" i_stop="51071" i_length="593"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51072" e_stop="51107" e_length="36"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.955">
            <gDNA_intron_boundary i_start="51108" i_stop="51362" i_length="255"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="51363" e_stop="51469" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.889" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51470" i_stop="52479" i_length="1010"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52480" e_stop="52551" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.935">
            <gDNA_intron_boundary i_start="52552" i_stop="54910" i_length="2359"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54911" e_stop="54959" e_length="49"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="0.977">
            <gDNA_intron_boundary i_start="54960" i_stop="55091" i_length="132"/>
          </intron>
          <exon e_serial="10" e_score="0.983">
            <gDNA_exon_boundary e_start="55092" e_stop="55684" e_length="593"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.958">
            <gDNA_intron_boundary i_start="55685" i_stop="56946" i_length="1262"/>
          </intron>
          <exon e_serial="11" e_score="0.978">
            <gDNA_exon_boundary e_start="56947" e_stop="57129" e_length="183"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.876">
            <gDNA_intron_boundary i_start="57130" i_stop="57202" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="0.983">
            <gDNA_exon_boundary e_start="57203" e_stop="57323" e_length="121"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57324" i_stop="60899" i_length="3576"/>
          </intron>
          <exon e_serial="13" e_score="0.908">
            <gDNA_exon_boundary e_start="60900" e_stop="61445" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48308"/>
              <exon start="48398" stop="48466"/>
              <exon start="48606" stop="48713"/>
              <exon start="49621" stop="49692"/>
              <exon start="50320" stop="50340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47944" stop="48308"/>
              <exon start="48398" stop="48466"/>
              <exon start="48606" stop="48713"/>
              <exon start="49621" stop="49692"/>
              <exon start="50320" stop="50478"/>
              <exon start="51072" stop="51107"/>
              <exon start="51363" stop="51469"/>
              <exon start="52480" stop="52551"/>
              <exon start="54911" stop="54959"/>
              <exon start="55092" stop="55684"/>
              <exon start="56947" stop="57129"/>
              <exon start="57203" stop="57323"/>
              <exon start="60900" stop="61445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47944" stop="48308"/>
              <exon start="48398" stop="48466"/>
              <exon start="48606" stop="48713"/>
              <exon start="49621" stop="49692"/>
              <exon start="50320" stop="50376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47944" stop="48308"/>
              <exon start="48398" stop="48466"/>
              <exon start="48606" stop="48671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47945" stop="48308"/>
              <exon start="48398" stop="48466"/>
              <exon start="48606" stop="48644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48096" stop="48308"/>
              <exon start="48398" stop="48466"/>
              <exon start="48606" stop="48713"/>
              <exon start="49621" stop="49692"/>
              <exon start="50320" stop="50434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52492" stop="52551"/>
              <exon start="54911" stop="54959"/>
              <exon start="55092" stop="55340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52494" stop="52551"/>
              <exon start="54911" stop="54959"/>
              <exon start="55092" stop="55363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTTGAAGTTTCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAG : TTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGAT : GTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAG : ATTGTTTCTACAAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGTTGGGATCTTCATTGGTGATAAG : TTCCACCTCAATCCTGTTCATGCAATTGTACAGCTCCGACCATCACTGCAGCATCGTAAGGAAAGTGAGTTGAAGAACCTTACCACCAGCAATGATGAAAAAAGTTGTGAAAACGAAGACGTCAAGGAGAAAAAGCCTGTGGGTCTGTCAAAGAAGCAG : AACAAACTACCTGGGAACTACAAGGATATTGGAGAG : CATTGGTTACATCTAAAATACCATGGGACTAGGAGTGACATTTCAGCCAGACATCTTCAAAAAATGGCTATGGAGGGAGGCTCCCCAGTACCATTTTCAATGATCCC : GAGTGATTATCTGAATGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAG : GTTGTCTCAGAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTCTTGAG : GGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTTTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCAAAAAGTTCATTAGTCTATGACACAAACAATGGAGTCGAAGTTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTAATTAAGAAGTCAGTGTTTGGCAGGAGGCCTGAATTCCTTAAAGCTGCGACACCAGTTCTAAAATCATTAGCTGTTGAGAGGCCTGACCTGGATGATTGGAAGCTCAAAGAGCTTCCTGACAAGAAATTCGAAAACCTCTATGGTGATGTTGTAAGAGAGCAGGAAGCTATCTGGGAGTCCATGGGGAAACAGATCAATGATATTATGCATGGAGGAAGAAACAGGCCTACTTTGAAGAATCCTCTAAACCCAAAGGCCAACATTCCTGCGTTGTCAAGTAGTGATAAGCCCACTCCTACGACATTTTTGAGAACATCTCTGTCAGAAGAAATTCGTGGAGCTTTACCTAAGGCGCTTCAAAATGTTTTTAGAATCCATAAGGTTTGCAG : TTTGCTTCAAATTTGCGAACTGATGGAAAAGGAAGATCCAATGAAAGCTATAATTTCACCCGCGGGTATTTCTGATGCACTTCGAAAGGAGATAGAGGCAGTGGTTAATCAGATTGCTGTAAACATCCACGGTGTCTATGTTTTGAAGTCATCGCCAGATAATCCACAGTATGATGCATTGAG : GAAAGTTGTAATTGATCTTTTTATGGCCGAAGGGTCGAATGCAAAGCTAAAGAAAGCATCTATAGTTGAAGCTGCCAAGTTGCAACTGGGAAGGGATGTCACCACTGTGGAGTTTCAAAAG : GTTATGAAGGAACTATGTCGTTCAGAAAACTCAGCATGGGTTTTGGGAATCAGTGACAGCAATCCACAACAGTAGTCTGCTATTTTTGATTAAGTCGTACAGGTCATGGGAAGTTCACTGCTAGCTGCAGAAATTCTCAATGCTGAGGAGAAGTTGGCTTTTCTTGAAGTTCCACTTTACTCTTGAGAGTCATAATTGTTCAGTTTTGAGGTTAACACGGAGTCTCGCGTATATGGTTGAGCTGTTGATACGCTTCGCGGTGCATTTGCAAATCTGGGAGAAAATTTAGTTAGGATTAGCAGATGTCAAGCCTTTTTTGCTCATTCTTTTATCATTCAATTTATTCTTTTCATGAACGAAAATATAGTCAGATGTTTCTTTTCAATGTCTTGAATATCTCTGTTAAAATGTATGAATTGTTGCATCTCTTTACTTGCAGAAGAAAATCATTCAGCATATTTGTACCATCAGAAGAAAAATACAAGTTAAAAAGTTTGCCGTTCTTGTAATTATATACGTATTTGATTCACCAAGTTGTCAAATTTC</gDNA_template>
            <first_frame> W  S  *  S  F  T  F  P  S  R  K  L  Q  *  W  I  W  T  S  T  V  Q  V  K  S  R  A  G  K  L  V  S  L  P  R  T  P  N  *  S  P  N  P  K  V  K  H  C  H  *  R  *  I  Q  R  F  R  L  K  R  K  N  L  Y  H  N  P  L  *  E  I  I  *  *  K  T  E  R  Q  K  L  R  T  T  F  F  *  M  E  R  L  R  E  T  I  L  Q  K  N  K  S  E  W  K  L  I  A  I  R  M  K  L  F  V  K  L  T  C  G  L  P  L  P  P  M  S :   S  M  Y  S  N  I  R  *  G  P  N  G  V  P  M  V  W  M  K  D  A  K  M :   *  G  *  D  L  H  R  Q  K  W  K  L  I  W  Q  *  I  L  I  L  K  I  S  T  E  T  L  Y  M  Q  Q  Q  *  K  N  R :   L  F  L  Q  N  G  C  H  H  L  L  V  L  T  L  L  L  G  S  S  L  V  I  S :   S  T  S  I  L  F  M  Q  L  Y  S  S  D  H  H  C  S  I  V  R  K  V  S  *  R  T  L  P  P  A  M  M  K  K  V  V  K  T  K  T  S  R  R  K  S  L  W  V  C  Q  R  S  R :   T  N  Y  L  G  T  T  R  I  L  E  S :   I  G  Y  I  *  N  T  M  G  L  G  V  T  F  Q  P  D  I  F  K  K  W  L  W  R  E  A  P  Q  Y  H  F  Q  *  S   : R  V  I  I  *  M  P  F  V  L  Q  D  Q  L  T  L  T  D  *  E  I  L  E  Q   : G  C  L  R  N  L  L  K  N  V  L  E  L  G  F  L  R :   D  L  Q  F  I  V  L  I  L  *  S  T  *  L  Q  I  I  L  L  M  R  F  W  K  F  S  K  V  A  H  N  *  F  K  D  C  G  L  Q  K  V  H  *  S  M  T  Q  T  M  E  S  K  F  *  R  G  I  L  F  F  M  S  L  P  R  V  L  *  L  R  S  Q  C  L  A  G  G  L  N  S  L  K  L  R  H  Q  F  *  N  H  *  L  L  R  G  L  T  W  M  I  G  S  S  K  S  F  L  T  R  N  S  K  T  S  M  V  M  L  *  E  S  R  K  L  S  G  S  P  W  G  N  R  S  M  I  L  C  M  E  E  E  T  G  L  L  *  R  I  L  *  T  Q  R  P  T  F  L  R  C  Q  V  V  I  S  P  L  L  R  H  F  *  E  H  L  C  Q  K  K  F  V  E  L  Y  L  R  R  F  K  M  F  L  E  S  I  R  F  A   : V  C  F  K  F  A  N  *  W  K  R  K  I  Q  *  K  L  *  F  H  P  R  V  F  L  M  H  F  E  R  R  *  R  Q  W  L  I  R  L  L  *  T  S  T  V  S  M  F  *  S  H  R  Q  I  I  H  S  M  M  H  *   : G  K  L  *  L  I  F  L  W  P  K  G  R  M  Q  S  *  R  K  H  L  *  L  K  L  P  S  C  N  W  E  G  M  S  P  L  W  S  F  K  R :   L  *  R  N  Y  V  V  Q  K  T  Q  H  G  F  W  E  S  V  T  A  I  H  N  S  S  L  L  F  L  I  K  S  Y  R  S  W  E  V  H  C  *  L  Q  K  F  S  M  L  R  R  S  W  L  F  L  K  F  H  F  T  L  E  S  H  N  C  S  V  L  R  L  T  R  S  L  A  Y  M  V  E  L  L  I  R  F  A  V  H  L  Q  I  W  E  K  I  *  L  G  L  A  D  V  K  P  F  L  L  I  L  L  S  F  N  L  F  F  S  *  T  K  I  *  S  D  V  S  F  Q  C  L  E  Y  L  C  *  N  V  *  I  V  A  S  L  Y  L  Q  K  K  I  I  Q  H  I  C  T  I  R  R  K  I  Q  V  K  K  F  A  V  L  V  I  I  Y  V  F  D  S  P  S  C  Q  I   </first_frame>
            <second_frame>  G  V  E  V  S  L  F  H  P  E  N  C  S  D  G  F  G  L  R  R  S  K  *  S  P  E  Q  A  S  S  F  R  S  Q  E  L  Q  I  K  A  P  T  Q  K  *  N  T  A  I  E  G  R  F  R  D  S  D  *  K  G  R  I  C  I  T  T  P  S  K  R  S  Y  S  E  K  R  R  G  K  S  *  G  R  R  S  F  E  W  R  D  Y  G  K  R  S  C  R  R  T  S  R  N  G  N  *  *  R  S  G  *  S  C  S  *  S  *  R  V  A  Y  P  F  R  Q  *   : V  L  C  T  P  I  S  V  E  V  R  M  A  S  L  W  F  G  *  K  M  P  R   : C  E  V  E  T  F  I  G  R  N  G  S  *  F  G  N  R  F  *  F  *  K  F  R  Q  R  L  C  T  C  S  N  N  K  K  T   : D  C  F  Y  K  M  G  A  I  I  Y  L  C  *  L  C  C  W  D  L  H  W  *  *   : V  P  P  Q  S  C  S  C  N  C  T  A  P  T  I  T  A  A  S  *  G  K  *  V  E  E  P  Y  H  Q  Q  *  *  K  K  L  *  K  R  R  R  Q  G  E  K  A  C  G  S  V  K  E  A   : E  Q  T  T  W  E  L  Q  G  Y  W  R   : A  L  V  T  S  K  I  P  W  D  *  E  *  H  F  S  Q  T  S  S  K  N  G  Y  G  G  R  L  P  S  T  I  F  N  D  P  :  E  *  L  S  E  C  H  L  S  C  K  T  N  *  H  *  Q  I  K  K  S  *  N  K  :  V  V  S  E  T  F  *  R  T  C  *  N  L  A  S  *   : G  T  S  N  S  S  F  *  Y  S  K  A  P  S  S  R  *  S  C  *  *  D  F  G  S  S  Q  K  L  R  T  I  S  S  R  I  V  G  C  K  K  F  I  S  L  *  H  K  Q  W  S  R  S  F  S  E  E  F  C  S  L  *  V  Y  Q  E  Y  F  N  *  E  V  S  V  W  Q  E  A  *  I  P  *  S  C  D  T  S  S  K  I  I  S  C  *  E  A  *  P  G  *  L  E  A  Q  R  A  S  *  Q  E  I  R  K  P  L  W  *  C  C  K  R  A  G  S  Y  L  G  V  H  G  E  T  D  Q  *  Y  Y  A  W  R  K  K  Q  A  Y  F  E  E  S  S  K  P  K  G  Q  H  S  C  V  V  K  *  *  *  A  H  S  Y  D  I  F  E  N  I  S  V  R  R  N  S  W  S  F  T  *  G  A  S  K  C  F  *  N  P  *  G  L  Q  :  F  A  S  N  L  R  T  D  G  K  G  R  S  N  E  S  Y  N  F  T  R  G  Y  F  *  C  T  S  K  G  D  R  G  S  G  *  S  D  C  C  K  H  P  R  C  L  C  F  E  V  I  A  R  *  S  T  V  *  C  I  E  :  E  S  C  N  *  S  F  Y  G  R  R  V  E  C  K  A  K  E  S  I  Y  S  *  S  C  Q  V  A  T  G  K  G  C  H  H  C  G  V  S  K   : G  Y  E  G  T  M  S  F  R  K  L  S  M  G  F  G  N  Q  *  Q  Q  S  T  T  V  V  C  Y  F  *  L  S  R  T  G  H  G  K  F  T  A  S  C  R  N  S  Q  C  *  G  E  V  G  F  S  *  S  S  T  L  L  L  R  V  I  I  V  Q  F  *  G  *  H  G  V  S  R  I  W  L  S  C  *  Y  A  S  R  C  I  C  K  S  G  R  K  F  S  *  D  *  Q  M  S  S  L  F  C  S  F  F  Y  H  S  I  Y  S  F  H  E  R  K  Y  S  Q  M  F  L  F  N  V  L  N  I  S  V  K  M  Y  E  L  L  H  L  F  T  C  R  R  K  S  F  S  I  F  V  P  S  E  E  K  Y  K  L  K  S  L  P  F  L  *  L  Y  T  Y  L  I  H  Q  V  V  K  F  </second_frame>
            <third_frame>   E  L  K  F  H  F  S  I  Q  K  I  A  V  M  D  L  D  F  D  G  P  S  K  V  P  S  R  Q  A  R  F  A  P  K  N  S  K  L  K  P  Q  P  K  S  E  T  L  P  L  K  V  D  S  E  I  P  T  K  K  E  E  F  V  S  Q  P  P  L  R  D  H  I  V  K  N  G  E  A  K  V  E  D  D  V  L  L  N  G  E  T  T  G  N  D  L  A  E  E  Q  V  G  M  E  T  D  S  D  Q  D  E  V  V  R  E  V  D  V  W  L  T  P  S  A  N  E  :  F  Y  V  L  Q  Y  P  L  R  S  E  W  R  P  Y  G  L  D  E  R  C  Q  D  :  V  R  L  R  P  S  S  A  E  M  E  V  D  L  A  I  D  F  D  S  K  N  F  D  R  D  S  V  H  A  A  T  I  K  K  Q  :  I  V  S  T  K  W  V  P  S  S  T  C  A  D  F  A  V  G  I  F  I  G  D  K  :  F  H  L  N  P  V  H  A  I  V  Q  L  R  P  S  L  Q  H  R  K  E  S  E  L  K  N  L  T  T  S  N  D  E  K  S  C  E  N  E  D  V  K  E  K  K  P  V  G  L  S  K  K  Q  :  N  K  L  P  G  N  Y  K  D  I  G  E  :  H  W  L  H  L  K  Y  H  G  T  R  S  D  I  S  A  R  H  L  Q  K  M  A  M  E  G  G  S  P  V  P  F  S  M  I  P :   S  D  Y  L  N  A  I  C  P  A  R  P  T  D  I  D  R  L  R  N  L  R  T  R :   L  S  Q  K  P  F  E  E  R  V  R  T  W  L  L  E  :  G  P  P  I  H  R  F  D  T  L  K  H  L  A  P  D  N  P  V  D  E  I  L  E  V  L  K  S  C  A  Q  L  V  Q  G  L  W  V  A  K  S  S  L  V  Y  D  T  N  N  G  V  E  V  L  A  R  N  F  V  L  Y  E  F  T  K  S  T  L  I  K  K  S  V  F  G  R  R  P  E  F  L  K  A  A  T  P  V  L  K  S  L  A  V  E  R  P  D  L  D  D  W  K  L  K  E  L  P  D  K  K  F  E  N  L  Y  G  D  V  V  R  E  Q  E  A  I  W  E  S  M  G  K  Q  I  N  D  I  M  H  G  G  R  N  R  P  T  L  K  N  P  L  N  P  K  A  N  I  P  A  L  S  S  S  D  K  P  T  P  T  T  F  L  R  T  S  L  S  E  E  I  R  G  A  L  P  K  A  L  Q  N  V  F  R  I  H  K  V  C  S :   L  L  Q  I  C  E  L  M  E  K  E  D  P  M  K  A  I  I  S  P  A  G  I  S  D  A  L  R  K  E  I  E  A  V  V  N  Q  I  A  V  N  I  H  G  V  Y  V  L  K  S  S  P  D  N  P  Q  Y  D  A  L  R :   K  V  V  I  D  L  F  M  A  E  G  S  N  A  K  L  K  K  A  S  I  V  E  A  A  K  L  Q  L  G  R  D  V  T  T  V  E  F  Q  K  :  V  M  K  E  L  C  R  S  E  N  S  A  W  V  L  G  I  S  D  S  N  P  Q  Q  *  S  A  I  F  D  *  V  V  Q  V  M  G  S  S  L  L  A  A  E  I  L  N  A  E  E  K  L  A  F  L  E  V  P  L  Y  S  *  E  S  *  L  F  S  F  E  V  N  T  E  S  R  V  Y  G  *  A  V  D  T  L  R  G  A  F  A  N  L  G  E  N  L  V  R  I  S  R  C  Q  A  F  F  A  H  S  F  I  I  Q  F  I  L  F  M  N  E  N  I  V  R  C  F  F  S  M  S  *  I  S  L  L  K  C  M  N  C  C  I  S  L  L  A  E  E  N  H  S  A  Y  L  Y  H  Q  K  K  N  T  S  *  K  V  C  R  S  C  N  Y  I  R  I  *  F  T  K  L  S  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47934" stop="48308"/>
                    <exon start="48398" stop="48466"/>
                    <exon start="48606" stop="48713"/>
                    <exon start="49621" stop="49692"/>
                    <exon start="50320" stop="50478"/>
                    <exon start="51072" stop="51107"/>
                    <exon start="51363" stop="51469"/>
                    <exon start="52480" stop="52551"/>
                    <exon start="54911" stop="54959"/>
                    <exon start="55092" stop="55684"/>
                    <exon start="56947" stop="57129"/>
                    <exon start="57203" stop="57323"/>
                    <exon start="60900" stop="60974"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2016</number_coding_nucleotides>
                  <number_encoded_amino_acids>672</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELKFHFSIQKIAVMDLDFDGPSKVPSRQARFAPKNSKLKPQPKSETLPLKVDSEIPTKKEEFVSQPPLRDHIVKNGEAKVEDDVLLNGETTGNDLAEEQVGMETDSDQDEVVREVDVWLTPSANEFYVLQYPLRSEWRPYGLDERCQDVRLRPSSAEMEVDLAIDFDSKNFDRDSVHAATIKKQIVSTKWVPSSTCADFAVGIFIGDKFHLNPVHAIVQLRPSLQHRKESELKNLTTSNDEKSCENEDVKEKKPVGLSKKQNKLPGNYKDIGEHWLHLKYHGTRSDISARHLQKMAMEGGSPVPFSMIPSDYLNAICPARPTDIDRLRNLRTRLSQKPFEERVRTWLLEGPPIHRFDTLKHLAPDNPVDEILEVLKSCAQLVQGLWVAKSSLVYDTNNGVEVLARNFVLYEFTKSTLIKKSVFGRRPEFLKAATPVLKSLAVERPDLDDWKLKELPDKKFENLYGDVVREQEAIWESMGKQINDIMHGGRNRPTLKNPLNPKANIPALSSSDKPTPTTFLRTSLSEEIRGALPKALQNVFRIHKVCSLLQICELMEKEDPMKAIISPAGISDALRKEIEAVVNQIAVNIHGVYVLKSSPDNPQYDALRKVVIDLFMAEGSNAKLKKASIVEAAKLQLGRDVTTVEFQKVMKELCRSENSAWVLGISDSNPQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61199" stop="61408"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMSSLFCSFFYHSIYSFHERKYSQMFLFNVLNISVKMYELLHLFTCRRKSFSIFVPSEEKYKLKSLPFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="61915" PGL_stop="67974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61915" e_stop="62054"/>
            <exon e_start="62731" e_stop="63011"/>
            <exon e_start="63302" e_stop="63409"/>
            <exon e_start="64065" e_stop="64135"/>
            <exon e_start="64745" e_stop="64818"/>
            <exon e_start="64896" e_stop="64940"/>
            <exon e_start="65027" e_stop="65086"/>
            <exon e_start="65801" e_stop="65861"/>
            <exon e_start="65950" e_stop="66062"/>
            <exon e_start="66415" e_stop="66861"/>
            <exon e_start="66968" e_stop="67103"/>
            <exon e_start="67208" e_stop="67275"/>
            <exon e_start="67580" e_stop="67974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61915" e_stop="62054" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62055" i_stop="62730" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62731" e_stop="63011" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63302" e_stop="63409" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="63410" i_stop="64064" i_length="655"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64065" e_stop="64135" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64745" e_stop="64818" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="64819" i_stop="64895" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64896" e_stop="64940" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65027" e_stop="65086" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="65087" i_stop="65800" i_length="714"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65801" e_stop="65861" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65950" e_stop="66062" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66415" e_stop="66861" e_length="447"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.815">
            <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="66968" e_stop="67103" e_length="136"/>
          </exon>
          <intron i_serial="11" don_prob="0.766" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67208" e_stop="67275" e_length="68"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="67580" e_stop="67974" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61915" stop="62054"/>
              <exon start="62731" stop="63011"/>
              <exon start="63302" stop="63316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61920" stop="62054"/>
              <exon start="62731" stop="63009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61973" stop="62054"/>
              <exon start="62731" stop="63011"/>
              <exon start="63302" stop="63409"/>
              <exon start="64065" stop="64135"/>
              <exon start="64745" stop="64803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62899" stop="63011"/>
              <exon start="63302" stop="63409"/>
              <exon start="64065" stop="64135"/>
              <exon start="64745" stop="64788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62901" stop="63011"/>
              <exon start="63302" stop="63409"/>
              <exon start="64065" stop="64135"/>
              <exon start="64745" stop="64818"/>
              <exon start="64896" stop="64935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62965" stop="63011"/>
              <exon start="63302" stop="63409"/>
              <exon start="64065" stop="64135"/>
              <exon start="64745" stop="64818"/>
              <exon start="64896" stop="64940"/>
              <exon start="65027" stop="65053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64094" stop="64135"/>
              <exon start="64745" stop="64818"/>
              <exon start="64896" stop="64940"/>
              <exon start="65027" stop="65086"/>
              <exon start="65801" stop="65861"/>
              <exon start="65950" stop="66062"/>
              <exon start="66415" stop="66689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65811" stop="65861"/>
              <exon start="65950" stop="66062"/>
              <exon start="66415" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66558" stop="66861"/>
              <exon start="66968" stop="67090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66561" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423257" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66648" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66695" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577139" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66697" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67049" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279916" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG : CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG : GCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAG : CAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG : GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAG : TTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG : GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG : TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG : GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG : GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG : AGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG : GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG : GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGAATGTCTTTTTTCTTTTTATAATTATGGCT</gDNA_template>
            <first_frame> K  T  H  F  *  P  *  F  C  T  E  E  K  N  *  G  K  N  V  V  E  R  C  R  N  M  K  V  M  E  K  I  *  R  I  M  V  L  L  L  T  V  T  P  S  L  S :   I  L  L  V  T  P  R  K  K  G  A  H  Q  E  A  G  R  R  R  G  R  K  G  V  I  K  T  G  T  G  T  G  I  E  I  E  I  E  T  G  T  E  V  R  K  G  T  K  I  G  I  G  T  E  R  G  R  R  T  V  I  V  I  T  E  I  V  I  G  I  G  V  I  G  G  R  G  S  E  I  E  M  K  M  I  F  S  E  L  E  I  T  I   : G  E  E  T  M  T  K  I  E  R  T  D  R  D  T  S  L  A  L  G  V  D  P  S  I  D  Q  G  L  D  H  G  H  H  L  R   : A  K  G  S  V  V  L  I  W  H  L  P  P  V  H  C  Y  L  A  L  L  M  L  Q  :  V  K  F  L  G  P  L  T  H  Q  Y  L  E  C  F  L  T  C  F  L  *  Q  Q  A  S :   L  E  L  S  L  L  C  Q  S  R  Q  *  H  S  R :   L  P  D  M  L  G  E  F  M  L  V  D  F  R  L  L  Q  M  N  S :   R  L  L  P  S  L  V  M  S  C  M  Q  S  E  E  I  L  L  V  Q  :  G  M  L  L  S  T  F  I  *  T  M  R  R  S  L  P  L  L  K  *  D  L  L  R  K  L  V  M  Q  W  L  W  M  V  S  F  L  R :   A  D  R  L  R  L  E  D  P  V  I  T  I  L  P  W  Q  L  H  L  V  L  V  N  R  A  P  T  S  T  W  Q  L  L  D  *  H  Q  V  L  P  E  G  L  K  D  L  T  V  Y  L  L  V  V  Y  P  I  I  L  Q  N  H  K  S  G  N  F  *  S  L  L  V  N  F  E  D  L  I  W  S  K  I  E  K  L  G  I  Q  K  V  M  L  F  V  C  T  R  M  S  L  L  L  I  L  L  V  Q  L  L  M  G  L  R  W  G  I  K  L  L  L  L  G  G  L  T  R  A  Q  P  N  P  T  L  S  K  R  V  Y  C  C  M  H  N  S  R  *  L  C  R :   G  S  C  Y  N  L  V  H  *  P  Q  R  F  C  A  *  Q  K  W  L  A  *  M  S  S  K  M  M  M  T  I  K  I  F  W  K  I  *  G  L  N  V  V  N  L  :  E  L  S  *  M  L  S  F  H  V  Q  I  L  M  A  S  L  H  L  D  S  G  R :   Y  S  W  S  M  Q  M  L  T  V  P  A  K  L  A  K  G  *  M  E  E  N  L  V  V  T  K  L  L  L  S  S  I  Q  R  T  S  S  L  R  E  I  T  R  L  N  C  N  H  Y  S  C  D  I  I  F  R  L  L  Q  G  V  V  C  M  S  Y  R  N  Y  I  P  L  L  T  K  I  I  S  V  L  S  F  F  L  L  L  F  C  F  G  E  H  G  I  F  Y  S  G  L  N  L  V  C  G  *  S  W  C  K  V  S  N  R  N  S  V  I  G  L  F  E  C  L  F  S  F  Y  N  Y  G  </first_frame>
            <second_frame>  K  L  I  S  S  P  S  F  V  L  K  R  K  I  R  V  K  T  *  W  N  D  A  G  I  *  R  *  W  R  R  Y  R  E  *  W  F  F  S  L  Q  *  L  Q  V  S   : A  Y  F  S  *  P  R  E  R  K  G  L  I  K  K  Q  G  E  G  E  G  E  R  A  *  *  R  P  G  Q  G  Q  E  *  R  *  R  *  R  Q  G  Q  R  *  G  K  G  Q  R  *  G  *  G  Q  R  E  G  E  G  P  *  S  S  S  Q  R  S  S  *  G  S  E  *  *  E  G  E  D  Q  R  S  R  *  R  *  S  S  A  N  S  R  L  R  *  :  A  K  R  Q  *  Q  R  *  R  G  P  T  E  T  Q  A  *  L  *  G  *  I  R  A  *  I  K  V  *  I  T  V  T  I  *  E  :  Q  K  D  Q  W  F  *  Y  G  T  S  H  Q  C  I  A  I  W  R  Y  *  C  C  R :   S  S  S  W  D  H  *  P  I  N  T  W  N  V  F  *  H  V  S  S  S  S  R  P   : V  W  S  S  P  Y  Y  A  S  P  G  N  D  T  A   : G  Y  Q  T  C  S  A  S  L  C  W  W  T  S  A  Y  C  K  *  T   : V  G  C  Y  L  L  *  S  C  H  V  C  N  R  R  K  Y  C  W  S  R :   G  C  C  C  Q  R  L  Y  K  P  *  E  E  V  C  L  C  *  N  E  I  C  *  G  S  *  *  C  N  G  F  G  W  C  H  F  *   : G  R  T  G  *  G  *  K  T  Q  *  L  Q  S  F  L  G  S  Y  T  W  S  *  S  T  E  P  Q  P  Q  P  G  S  C  W  I  D  T  R  F  F  R  R  A  *  R  T  *  P  Y  I  C  W  W  F  T  L  L  F  Y  R  I  T  N  Q  G  T  F  R  V  F  W  S  T  S  R  I  *  S  G  Q  R  *  R  N  W  E  F  K  R  L  C  F  L  C  V  P  G  C  L  C  Y  *  Y  C  L  C  S  S  *  W  D  *  D  G  G  *  N  S  Y  C  *  A  G  *  P  G  H  N  P  T  Q  P  *  A  R  E  C  I  V  A  C  T  T  A  D  S  F  A   : E  V  H  V  T  T  W  C  I  S  H  K  G  F  V  L  D  R  S  G  *  R  R  *  A  Q  R  *  *  *  L  S  R  Y  F  G  R  Y  E  D  *  M  W  *  I  W :   S  S  P  E  C  C  H  S  T  S  K  S  *  W  R  A  Y  T  W  T  R  E   : G  I  P  G  V  C  R  C  *  Q  F  Q  Q  S  S  P  R  A  E  W  K  K  I  W  W  *  P  S  Y  C  C  L  L  S  R  E  Q  V  L  *  G  R  L  R  G  L  T  V  T  T  I  A  V  T  *  Y  S  D  Y  Y  R  E  L  F  A  C  P  I  G  I  I  S  P  F  *  Q  R  L  L  V  S  C  L  F  F  F  C  F  F  V  L  V  S  M  G  Y  F  I  L  D  *  I  *  F  V  V  K  A  G  V  K  Y  Q  T  G  I  V  L  S  G  C  L  N  V  F  F  L  F  I  I  M  A </second_frame>
            <third_frame>   N  S  F  L  A  L  V  L  Y  *  R  E  K  L  G  *  K  R  S  G  T  M  Q  E  Y  E  G  N  G  E  D  I  E  N  N  G  S  S  P  Y  S  D  S  K  S  Q  :  H  T  S  R  D  P  E  K  E  R  G  S  S  R  S  R  E  K  E  R  E  K  G  R  D  K  D  R  D  R  D  R  N  R  D  R  D  R  D  R  D  R  G  K  E  R  D  K  D  R  D  R  D  R  E  R  E  K  D  R  D  R  H  H  R  D  R  H  R  D  R  S  D  R  R  E  R  I  R  D  R  D  E  D  D  L  Q  R  T  R  D  Y  D  R :   R  R  D  N  D  K  D  R  E  D  R  Q  R  H  K  P  S  S  R  G  R  S  E  H  R  S  R  S  R  S  R  S  P  S  K  S :   K  R  I  S  G  F  D  M  A  P  P  T  S  A  L  L  S  G  A  T  D  V  A   : G  Q  V  P  G  T  T  N  P  S  I  P  G  M  F  S  N  M  F  P  L  A  A  G  Q  :  F  G  A  L  P  I  M  P  V  Q  A  M  T  Q  Q  :  A  T  R  H  A  R  R  V  Y  V  G  G  L  P  P  T  A  N  E  Q  :  S  V  A  T  F  F  S  H  V  M  Y  A  I  G  G  N  T  A  G  P   : G  D  A  V  V  N  V  Y  I  N  H  E  K  K  F  A  F  V  E  M  R  S  V  E  E  A  S  N  A  M  A  L  D  G  V  I  F  E  :  G  G  P  V  K  V  R  R  P  S  D  Y  N  P  S  L  A  A  T  L  G  P  S  Q  P  S  P  N  L  N  L  A  A  V  G  L  T  P  G  S  S  G  G  L  E  G  P  D  R  I  F  V  G  G  L  P  Y  Y  F  T  E  S  Q  I  R  E  L  L  E  S  F  G  Q  L  R  G  F  D  L  V  K  D  R  E  T  G  N  S  K  G  Y  A  F  C  V  Y  Q  D  V  S  V  T  D  I  A  C  A  A  L  N  G  I  K  M  G  D  K  T  L  T  V  R  R  A  N  Q  G  T  T  Q  P  N  P  E  Q  E  S  V  L  L  H  A  Q  Q  Q  I  A  L  Q  :  R  F  M  L  Q  P  G  A  L  A  T  K  V  L  C  L  T  E  V  V  S  V  D  E  L  K  D  D  D  D  Y  Q  D  I  L  E  D  M  R  I  E  C  G  K  F   : G  A  L  L  N  V  V  I  P  R  P  N  P  N  G  E  P  T  P  G  L  G  K  :  V  F  L  E  Y  A  D  V  D  S  S  S  K  A  R  Q  G  L  N  G  R  K  F  G  G  N  Q  V  I  A  V  F  Y  P  E  N  K  F  S  E  G  D  Y  E  A  *  L  *  P  L  *  L  *  H  N  I  Q  I  I  T  G  S  C  L  H  V  L  *  E  L  Y  P  P  F  D  K  D  Y  *  C  P  V  F  F  S  F  A  F  L  F  W  *  A  W  D  I  L  F  W  I  K  F  S  L  W  L  K  L  V  *  S  I  K  Q  E  *  C  Y  R  V  V  *  M  S  F  F  F  L  *  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61965" stop="62054"/>
                    <exon start="62731" stop="63011"/>
                    <exon start="63302" stop="63409"/>
                    <exon start="64065" stop="64135"/>
                    <exon start="64745" stop="64818"/>
                    <exon start="64896" stop="64940"/>
                    <exon start="65027" stop="65086"/>
                    <exon start="65801" stop="65861"/>
                    <exon start="65950" stop="66062"/>
                    <exon start="66415" stop="66861"/>
                    <exon start="66968" stop="67103"/>
                    <exon start="67208" stop="67275"/>
                    <exon start="67580" stop="67717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1689</number_coding_nucleotides>
                  <number_encoded_amino_acids>563</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSGTMQEYEGNGEDIENNGSSPYSDSKSQHTSRDPEKERGSSRSREKEREKGRDKDRDRDRNRDRDRDRDRGKERDKDRDRDREREKDRDRHHRDRHRDRSDRRERIRDRDEDDLQRTRDYDRRRDNDKDREDRQRHKPSSRGRSEHRSRSRSRSPSKSKRISGFDMAPPTSALLSGATDVAGQVPGTTNPSIPGMFSNMFPLAAGQFGALPIMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVSVDELKDDDDYQDILEDMRIECGKFGALLNVVIPRPNPNGEPTPGLGKVFLEYADVDSSSKARQGLNGRKFGGNQVIAVFYPENKFSEGDYEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61915" e_stop="62054"/>
            <exon e_start="62731" e_stop="63011"/>
            <exon e_start="63302" e_stop="63409"/>
            <exon e_start="64065" e_stop="64135"/>
            <exon e_start="64745" e_stop="64940"/>
            <exon e_start="65027" e_stop="65086"/>
            <exon e_start="65801" e_stop="65861"/>
            <exon e_start="65950" e_stop="66062"/>
            <exon e_start="66415" e_stop="66861"/>
            <exon e_start="66968" e_stop="67103"/>
            <exon e_start="67208" e_stop="67275"/>
            <exon e_start="67580" e_stop="67974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61915" e_stop="62054" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62055" i_stop="62730" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62731" e_stop="63011" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63302" e_stop="63409" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="63410" i_stop="64064" i_length="655"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64065" e_stop="64135" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="64136" i_stop="64744" i_length="609"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64745" e_stop="64940" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65027" e_stop="65086" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="65087" i_stop="65800" i_length="714"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65801" e_stop="65861" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65950" e_stop="66062" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66415" e_stop="66861" e_length="447"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.815">
            <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66968" e_stop="67103" e_length="136"/>
          </exon>
          <intron i_serial="10" don_prob="0.766" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67208" e_stop="67275" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67580" e_stop="67974" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61915" stop="62054"/>
              <exon start="62731" stop="63011"/>
              <exon start="63302" stop="63316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61920" stop="62054"/>
              <exon start="62731" stop="63009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61973" stop="62054"/>
              <exon start="62731" stop="63011"/>
              <exon start="63302" stop="63409"/>
              <exon start="64065" stop="64135"/>
              <exon start="64745" stop="64803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62899" stop="63011"/>
              <exon start="63302" stop="63409"/>
              <exon start="64065" stop="64135"/>
              <exon start="64745" stop="64788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64080" stop="64135"/>
              <exon start="64745" stop="64940"/>
              <exon start="65027" stop="65086"/>
              <exon start="65801" stop="65861"/>
              <exon start="65950" stop="66062"/>
              <exon start="66415" stop="66541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64080" stop="64135"/>
              <exon start="64745" stop="64940"/>
              <exon start="65027" stop="65086"/>
              <exon start="65801" stop="65861"/>
              <exon start="65950" stop="66062"/>
              <exon start="66415" stop="66541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64081" stop="64135"/>
              <exon start="64745" stop="64940"/>
              <exon start="65027" stop="65086"/>
              <exon start="65801" stop="65861"/>
              <exon start="65950" stop="66062"/>
              <exon start="66415" stop="66656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65811" stop="65861"/>
              <exon start="65950" stop="66062"/>
              <exon start="66415" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66558" stop="66861"/>
              <exon start="66968" stop="67090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66561" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423257" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66648" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66695" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577139" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66697" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67049" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279916" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG : CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG : GCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAG : CAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG : GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG : GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG : TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG : GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG : GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG : AGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG : GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG : GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGAATGTCTTTTTTCTTTTTATAATTATGGCT</gDNA_template>
            <first_frame> K  T  H  F  *  P  *  F  C  T  E  E  K  N  *  G  K  N  V  V  E  R  C  R  N  M  K  V  M  E  K  I  *  R  I  M  V  L  L  L  T  V  T  P  S  L  S :   I  L  L  V  T  P  R  K  K  G  A  H  Q  E  A  G  R  R  R  G  R  K  G  V  I  K  T  G  T  G  T  G  I  E  I  E  I  E  T  G  T  E  V  R  K  G  T  K  I  G  I  G  T  E  R  G  R  R  T  V  I  V  I  T  E  I  V  I  G  I  G  V  I  G  G  R  G  S  E  I  E  M  K  M  I  F  S  E  L  E  I  T  I   : G  E  E  T  M  T  K  I  E  R  T  D  R  D  T  S  L  A  L  G  V  D  P  S  I  D  Q  G  L  D  H  G  H  H  L  R   : A  K  G  S  V  V  L  I  W  H  L  P  P  V  H  C  Y  L  A  L  L  M  L  Q  :  V  K  F  L  G  P  L  T  H  Q  Y  L  E  C  F  L  T  C  F  L  *  Q  Q  A  R  Y  C  D  R  S  F  L  A  Y  L  H  W  L  S  I  F  S  Y  I  C  F  V  A  S  L  V  W  S  S  P  Y  Y  A  S  P  G  N  D  T  A   : G  Y  Q  T  C  S  A  S  L  C  W  W  T  S  A  Y  C  K  *  T   : V  G  C  Y  L  L  *  S  C  H  V  C  N  R  R  K  Y  C  W  S  R :   G  C  C  C  Q  R  L  Y  K  P  *  E  E  V  C  L  C  *  N  E  I  C  *  G  S  *  *  C  N  G  F  G  W  C  H  F  *   : G  R  T  G  *  G  *  K  T  Q  *  L  Q  S  F  L  G  S  Y  T  W  S  *  S  T  E  P  Q  P  Q  P  G  S  C  W  I  D  T  R  F  F  R  R  A  *  R  T  *  P  Y  I  C  W  W  F  T  L  L  F  Y  R  I  T  N  Q  G  T  F  R  V  F  W  S  T  S  R  I  *  S  G  Q  R  *  R  N  W  E  F  K  R  L  C  F  L  C  V  P  G  C  L  C  Y  *  Y  C  L  C  S  S  *  W  D  *  D  G  G  *  N  S  Y  C  *  A  G  *  P  G  H  N  P  T  Q  P  *  A  R  E  C  I  V  A  C  T  T  A  D  S  F  A   : E  V  H  V  T  T  W  C  I  S  H  K  G  F  V  L  D  R  S  G  *  R  R  *  A  Q  R  *  *  *  L  S  R  Y  F  G  R  Y  E  D  *  M  W  *  I  W :   S  S  P  E  C  C  H  S  T  S  K  S  *  W  R  A  Y  T  W  T  R  E   : G  I  P  G  V  C  R  C  *  Q  F  Q  Q  S  S  P  R  A  E  W  K  K  I  W  W  *  P  S  Y  C  C  L  L  S  R  E  Q  V  L  *  G  R  L  R  G  L  T  V  T  T  I  A  V  T  *  Y  S  D  Y  Y  R  E  L  F  A  C  P  I  G  I  I  S  P  F  *  Q  R  L  L  V  S  C  L  F  F  F  C  F  F  V  L  V  S  M  G  Y  F  I  L  D  *  I  *  F  V  V  K  A  G  V  K  Y  Q  T  G  I  V  L  S  G  C  L  N  V  F  F  L  F  I  I  M  A </first_frame>
            <second_frame>  K  L  I  S  S  P  S  F  V  L  K  R  K  I  R  V  K  T  *  W  N  D  A  G  I  *  R  *  W  R  R  Y  R  E  *  W  F  F  S  L  Q  *  L  Q  V  S   : A  Y  F  S  *  P  R  E  R  K  G  L  I  K  K  Q  G  E  G  E  G  E  R  A  *  *  R  P  G  Q  G  Q  E  *  R  *  R  *  R  Q  G  Q  R  *  G  K  G  Q  R  *  G  *  G  Q  R  E  G  E  G  P  *  S  S  S  Q  R  S  S  *  G  S  E  *  *  E  G  E  D  Q  R  S  R  *  R  *  S  S  A  N  S  R  L  R  *  :  A  K  R  Q  *  Q  R  *  R  G  P  T  E  T  Q  A  *  L  *  G  *  I  R  A  *  I  K  V  *  I  T  V  T  I  *  E  :  Q  K  D  Q  W  F  *  Y  G  T  S  H  Q  C  I  A  I  W  R  Y  *  C  C  R :   S  S  S  W  D  H  *  P  I  N  T  W  N  V  F  *  H  V  S  S  S  S  R  P  G  T  V  T  D  P  S  *  H  T  F  T  G  Y  L  Y  S  H  I  F  V  L  W  L  L  *  F  G  A  L  P  I  M  P  V  Q  A  M  T  Q  Q  :  A  T  R  H  A  R  R  V  Y  V  G  G  L  P  P  T  A  N  E  Q  :  S  V  A  T  F  F  S  H  V  M  Y  A  I  G  G  N  T  A  G  P   : G  D  A  V  V  N  V  Y  I  N  H  E  K  K  F  A  F  V  E  M  R  S  V  E  E  A  S  N  A  M  A  L  D  G  V  I  F  E  :  G  G  P  V  K  V  R  R  P  S  D  Y  N  P  S  L  A  A  T  L  G  P  S  Q  P  S  P  N  L  N  L  A  A  V  G  L  T  P  G  S  S  G  G  L  E  G  P  D  R  I  F  V  G  G  L  P  Y  Y  F  T  E  S  Q  I  R  E  L  L  E  S  F  G  Q  L  R  G  F  D  L  V  K  D  R  E  T  G  N  S  K  G  Y  A  F  C  V  Y  Q  D  V  S  V  T  D  I  A  C  A  A  L  N  G  I  K  M  G  D  K  T  L  T  V  R  R  A  N  Q  G  T  T  Q  P  N  P  E  Q  E  S  V  L  L  H  A  Q  Q  Q  I  A  L  Q  :  R  F  M  L  Q  P  G  A  L  A  T  K  V  L  C  L  T  E  V  V  S  V  D  E  L  K  D  D  D  D  Y  Q  D  I  L  E  D  M  R  I  E  C  G  K  F   : G  A  L  L  N  V  V  I  P  R  P  N  P  N  G  E  P  T  P  G  L  G  K  :  V  F  L  E  Y  A  D  V  D  S  S  S  K  A  R  Q  G  L  N  G  R  K  F  G  G  N  Q  V  I  A  V  F  Y  P  E  N  K  F  S  E  G  D  Y  E  A  *  L  *  P  L  *  L  *  H  N  I  Q  I  I  T  G  S  C  L  H  V  L  *  E  L  Y  P  P  F  D  K  D  Y  *  C  P  V  F  F  S  F  A  F  L  F  W  *  A  W  D  I  L  F  W  I  K  F  S  L  W  L  K  L  V  *  S  I  K  Q  E  *  C  Y  R  V  V  *  M  S  F  F  F  L  *  L  W   </second_frame>
            <third_frame>   N  S  F  L  A  L  V  L  Y  *  R  E  K  L  G  *  K  R  S  G  T  M  Q  E  Y  E  G  N  G  E  D  I  E  N  N  G  S  S  P  Y  S  D  S  K  S  Q  :  H  T  S  R  D  P  E  K  E  R  G  S  S  R  S  R  E  K  E  R  E  K  G  R  D  K  D  R  D  R  D  R  N  R  D  R  D  R  D  R  D  R  G  K  E  R  D  K  D  R  D  R  D  R  E  R  E  K  D  R  D  R  H  H  R  D  R  H  R  D  R  S  D  R  R  E  R  I  R  D  R  D  E  D  D  L  Q  R  T  R  D  Y  D  R :   R  R  D  N  D  K  D  R  E  D  R  Q  R  H  K  P  S  S  R  G  R  S  E  H  R  S  R  S  R  S  R  S  P  S  K  S :   K  R  I  S  G  F  D  M  A  P  P  T  S  A  L  L  S  G  A  T  D  V  A   : G  Q  V  P  G  T  T  N  P  S  I  P  G  M  F  S  N  M  F  P  L  A  A  G  Q  V  L  *  Q  I  L  L  S  I  P  S  L  V  I  Y  I  L  I  Y  L  F  C  G  F  S  S  L  E  L  S  L  L  C  Q  S  R  Q  *  H  S  R :   L  P  D  M  L  G  E  F  M  L  V  D  F  R  L  L  Q  M  N  S :   R  L  L  P  S  L  V  M  S  C  M  Q  S  E  E  I  L  L  V  Q  :  G  M  L  L  S  T  F  I  *  T  M  R  R  S  L  P  L  L  K  *  D  L  L  R  K  L  V  M  Q  W  L  W  M  V  S  F  L  R :   A  D  R  L  R  L  E  D  P  V  I  T  I  L  P  W  Q  L  H  L  V  L  V  N  R  A  P  T  S  T  W  Q  L  L  D  *  H  Q  V  L  P  E  G  L  K  D  L  T  V  Y  L  L  V  V  Y  P  I  I  L  Q  N  H  K  S  G  N  F  *  S  L  L  V  N  F  E  D  L  I  W  S  K  I  E  K  L  G  I  Q  K  V  M  L  F  V  C  T  R  M  S  L  L  L  I  L  L  V  Q  L  L  M  G  L  R  W  G  I  K  L  L  L  L  G  G  L  T  R  A  Q  P  N  P  T  L  S  K  R  V  Y  C  C  M  H  N  S  R  *  L  C  R :   G  S  C  Y  N  L  V  H  *  P  Q  R  F  C  A  *  Q  K  W  L  A  *  M  S  S  K  M  M  M  T  I  K  I  F  W  K  I  *  G  L  N  V  V  N  L  :  E  L  S  *  M  L  S  F  H  V  Q  I  L  M  A  S  L  H  L  D  S  G  R :   Y  S  W  S  M  Q  M  L  T  V  P  A  K  L  A  K  G  *  M  E  E  N  L  V  V  T  K  L  L  L  S  S  I  Q  R  T  S  S  L  R  E  I  T  R  L  N  C  N  H  Y  S  C  D  I  I  F  R  L  L  Q  G  V  V  C  M  S  Y  R  N  Y  I  P  L  L  T  K  I  I  S  V  L  S  F  F  L  L  L  F  C  F  G  E  H  G  I  F  Y  S  G  L  N  L  V  C  G  *  S  W  C  K  V  S  N  R  N  S  V  I  G  L  F  E  C  L  F  S  F  Y  N  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64896" stop="64940"/>
                    <exon start="65027" stop="65086"/>
                    <exon start="65801" stop="65861"/>
                    <exon start="65950" stop="66062"/>
                    <exon start="66415" stop="66861"/>
                    <exon start="66968" stop="67103"/>
                    <exon start="67208" stop="67275"/>
                    <exon start="67580" stop="67717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGALPIMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVSVDELKDDDDYQDILEDMRIECGKFGALLNVVIPRPNPNGEPTPGLGKVFLEYADVDSSSKARQGLNGRKFGGNQVIAVFYPENKFSEGDYEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61965" stop="62054"/>
                    <exon start="62731" stop="63011"/>
                    <exon start="63302" stop="63409"/>
                    <exon start="64065" stop="64135"/>
                    <exon start="64745" stop="64827"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSGTMQEYEGNGEDIENNGSSPYSDSKSQHTSRDPEKERGSSRSREKEREKGRDKDRDRDRNRDRDRDRDRGKERDKDRDRDREREKDRDRHHRDRHRDRSDRRERIRDRDEDDLQRTRDYDRRRDNDKDREDRQRHKPSSRGRSEHRSRSRSRSPSKSKRISGFDMAPPTSALLSGATDVAGQVPGTTNPSIPGMFSNMFPLAAGQVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64406" e_stop="64503"/>
            <exon e_start="64745" e_stop="64818"/>
            <exon e_start="64896" e_stop="64940"/>
            <exon e_start="65027" e_stop="65086"/>
            <exon e_start="65801" e_stop="65861"/>
            <exon e_start="65950" e_stop="66062"/>
            <exon e_start="66415" e_stop="66861"/>
            <exon e_start="66968" e_stop="67103"/>
            <exon e_start="67208" e_stop="67275"/>
            <exon e_start="67580" e_stop="67974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="0.959"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.916" e_score="0.983"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64406" e_stop="64503" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.986">
            <gDNA_intron_boundary i_start="64504" i_stop="64744" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="64745" e_stop="64818" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="64819" i_stop="64895" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64896" e_stop="64940" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64941" i_stop="65026" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="65027" e_stop="65086" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="65087" i_stop="65800" i_length="714"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65801" e_stop="65861" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65862" i_stop="65949" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65950" e_stop="66062" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66063" i_stop="66414" i_length="352"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66415" e_stop="66861" e_length="447"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.815">
            <gDNA_intron_boundary i_start="66862" i_stop="66967" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66968" e_stop="67103" e_length="136"/>
          </exon>
          <intron i_serial="8" don_prob="0.766" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67104" i_stop="67207" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67208" e_stop="67275" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67276" i_stop="67579" i_length="304"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67580" e_stop="67974" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64406" stop="64503"/>
              <exon start="64745" stop="64818"/>
              <exon start="64896" stop="64940"/>
              <exon start="65027" stop="65086"/>
              <exon start="65801" stop="65861"/>
              <exon start="65950" stop="66062"/>
              <exon start="66415" stop="66724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65811" stop="65861"/>
              <exon start="65950" stop="66062"/>
              <exon start="66415" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66558" stop="66861"/>
              <exon start="66968" stop="67090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66561" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423257" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66648" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66695" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577139" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66697" stop="66861"/>
              <exon start="66968" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67049" stop="67103"/>
              <exon start="67208" stop="67275"/>
              <exon start="67580" stop="67945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279916" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAG : GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAG : TTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG : GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG : TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG : GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG : GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG : AGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG : GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG : GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGAATGTCTTTTTTCTTTTTATAATTATGGCT</gDNA_template>
            <first_frame> V  L  R  R  Q  C  W  A  T  C  P  T  V  L  T  M  G  V  S  R  L  L  *  L  I  C  T  R  K  N  R  Y  R :   S  S  S  W  D  H  *  P  I  N  T  W  N  V  F  *  H  V  S  S  S  S  R  P   : V  W  S  S  P  Y  Y  A  S  P  G  N  D  T  A   : G  Y  Q  T  C  S  A  S  L  C  W  W  T  S  A  Y  C  K  *  T   : V  G  C  Y  L  L  *  S  C  H  V  C  N  R  R  K  Y  C  W  S  R :   G  C  C  C  Q  R  L  Y  K  P  *  E  E  V  C  L  C  *  N  E  I  C  *  G  S  *  *  C  N  G  F  G  W  C  H  F  *   : G  R  T  G  *  G  *  K  T  Q  *  L  Q  S  F  L  G  S  Y  T  W  S  *  S  T  E  P  Q  P  Q  P  G  S  C  W  I  D  T  R  F  F  R  R  A  *  R  T  *  P  Y  I  C  W  W  F  T  L  L  F  Y  R  I  T  N  Q  G  T  F  R  V  F  W  S  T  S  R  I  *  S  G  Q  R  *  R  N  W  E  F  K  R  L  C  F  L  C  V  P  G  C  L  C  Y  *  Y  C  L  C  S  S  *  W  D  *  D  G  G  *  N  S  Y  C  *  A  G  *  P  G  H  N  P  T  Q  P  *  A  R  E  C  I  V  A  C  T  T  A  D  S  F  A   : E  V  H  V  T  T  W  C  I  S  H  K  G  F  V  L  D  R  S  G  *  R  R  *  A  Q  R  *  *  *  L  S  R  Y  F  G  R  Y  E  D  *  M  W  *  I  W :   S  S  P  E  C  C  H  S  T  S  K  S  *  W  R  A  Y  T  W  T  R  E   : G  I  P  G  V  C  R  C  *  Q  F  Q  Q  S  S  P  R  A  E  W  K  K  I  W  W  *  P  S  Y  C  C  L  L  S  R  E  Q  V  L  *  G  R  L  R  G  L  T  V  T  T  I  A  V  T  *  Y  S  D  Y  Y  R  E  L  F  A  C  P  I  G  I  I  S  P  F  *  Q  R  L  L  V  S  C  L  F  F  F  C  F  F  V  L  V  S  M  G  Y  F  I  L  D  *  I  *  F  V  V  K  A  G  V  K  Y  Q  T  G  I  V  L  S  G  C  L  N  V  F  F  L  F  I  I  M  A </first_frame>
            <second_frame>  F  *  E  G  N  V  G  L  L  A  P  L  C  *  Q  W  A  *  A  D  F  C  S  L  Y  V  Q  G  R  I  D  T   : G  Q  V  P  G  T  T  N  P  S  I  P  G  M  F  S  N  M  F  P  L  A  A  G  Q  :  F  G  A  L  P  I  M  P  V  Q  A  M  T  Q  Q  :  A  T  R  H  A  R  R  V  Y  V  G  G  L  P  P  T  A  N  E  Q  :  S  V  A  T  F  F  S  H  V  M  Y  A  I  G  G  N  T  A  G  P   : G  D  A  V  V  N  V  Y  I  N  H  E  K  K  F  A  F  V  E  M  R  S  V  E  E  A  S  N  A  M  A  L  D  G  V  I  F  E  :  G  G  P  V  K  V  R  R  P  S  D  Y  N  P  S  L  A  A  T  L  G  P  S  Q  P  S  P  N  L  N  L  A  A  V  G  L  T  P  G  S  S  G  G  L  E  G  P  D  R  I  F  V  G  G  L  P  Y  Y  F  T  E  S  Q  I  R  E  L  L  E  S  F  G  Q  L  R  G  F  D  L  V  K  D  R  E  T  G  N  S  K  G  Y  A  F  C  V  Y  Q  D  V  S  V  T  D  I  A  C  A  A  L  N  G  I  K  M  G  D  K  T  L  T  V  R  R  A  N  Q  G  T  T  Q  P  N  P  E  Q  E  S  V  L  L  H  A  Q  Q  Q  I  A  L  Q  :  R  F  M  L  Q  P  G  A  L  A  T  K  V  L  C  L  T  E  V  V  S  V  D  E  L  K  D  D  D  D  Y  Q  D  I  L  E  D  M  R  I  E  C  G  K  F   : G  A  L  L  N  V  V  I  P  R  P  N  P  N  G  E  P  T  P  G  L  G  K  :  V  F  L  E  Y  A  D  V  D  S  S  S  K  A  R  Q  G  L  N  G  R  K  F  G  G  N  Q  V  I  A  V  F  Y  P  E  N  K  F  S  E  G  D  Y  E  A  *  L  *  P  L  *  L  *  H  N  I  Q  I  I  T  G  S  C  L  H  V  L  *  E  L  Y  P  P  F  D  K  D  Y  *  C  P  V  F  F  S  F  A  F  L  F  W  *  A  W  D  I  L  F  W  I  K  F  S  L  W  L  K  L  V  *  S  I  K  Q  E  *  C  Y  R  V  V  *  M  S  F  F  F  L  *  L  W   </second_frame>
            <third_frame>   S  K  K  A  M  L  G  Y  L  P  H  C  A  D  N  G  R  E  P  T  S  V  A  Y  M  Y  K  E  E  S  I  Q  :  V  K  F  L  G  P  L  T  H  Q  Y  L  E  C  F  L  T  C  F  L  *  Q  Q  A  S :   L  E  L  S  L  L  C  Q  S  R  Q  *  H  S  R :   L  P  D  M  L  G  E  F  M  L  V  D  F  R  L  L  Q  M  N  S :   R  L  L  P  S  L  V  M  S  C  M  Q  S  E  E  I  L  L  V  Q  :  G  M  L  L  S  T  F  I  *  T  M  R  R  S  L  P  L  L  K  *  D  L  L  R  K  L  V  M  Q  W  L  W  M  V  S  F  L  R :   A  D  R  L  R  L  E  D  P  V  I  T  I  L  P  W  Q  L  H  L  V  L  V  N  R  A  P  T  S  T  W  Q  L  L  D  *  H  Q  V  L  P  E  G  L  K  D  L  T  V  Y  L  L  V  V  Y  P  I  I  L  Q  N  H  K  S  G  N  F  *  S  L  L  V  N  F  E  D  L  I  W  S  K  I  E  K  L  G  I  Q  K  V  M  L  F  V  C  T  R  M  S  L  L  L  I  L  L  V  Q  L  L  M  G  L  R  W  G  I  K  L  L  L  L  G  G  L  T  R  A  Q  P  N  P  T  L  S  K  R  V  Y  C  C  M  H  N  S  R  *  L  C  R :   G  S  C  Y  N  L  V  H  *  P  Q  R  F  C  A  *  Q  K  W  L  A  *  M  S  S  K  M  M  M  T  I  K  I  F  W  K  I  *  G  L  N  V  V  N  L  :  E  L  S  *  M  L  S  F  H  V  Q  I  L  M  A  S  L  H  L  D  S  G  R :   Y  S  W  S  M  Q  M  L  T  V  P  A  K  L  A  K  G  *  M  E  E  N  L  V  V  T  K  L  L  L  S  S  I  Q  R  T  S  S  L  R  E  I  T  R  L  N  C  N  H  Y  S  C  D  I  I  F  R  L  L  Q  G  V  V  C  M  S  Y  R  N  Y  I  P  L  L  T  K  I  I  S  V  L  S  F  F  L  L  L  F  C  F  G  E  H  G  I  F  Y  S  G  L  N  L  V  C  G  *  S  W  C  K  V  S  N  R  N  S  V  I  G  L  F  E  C  L  F  S  F  Y  N  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64461" stop="64503"/>
                    <exon start="64745" stop="64818"/>
                    <exon start="64896" stop="64940"/>
                    <exon start="65027" stop="65086"/>
                    <exon start="65801" stop="65861"/>
                    <exon start="65950" stop="66062"/>
                    <exon start="66415" stop="66861"/>
                    <exon start="66968" stop="67103"/>
                    <exon start="67208" stop="67275"/>
                    <exon start="67580" stop="67717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADFCSLYVQGRIDTGQVPGTTNPSIPGMFSNMFPLAAGQFGALPIMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVSVDELKDDDDYQDILEDMRIECGKFGALLNVVIPRPNPNGEPTPGLGKVFLEYADVDSSSKARQGLNGRKFGGNQVIAVFYPENKFSEGDYEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="61915" e_stop="62054"/>
            <exon e_start="62731" e_stop="63011"/>
            <exon e_start="63302" e_stop="63409"/>
            <exon e_start="64065" e_stop="64135"/>
            <exon e_start="64417" e_stop="64503"/>
            <exon e_start="64745" e_stop="64806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.986" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61915" e_stop="62054" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62055" i_stop="62730" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62731" e_stop="63011" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63012" i_stop="63301" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63302" e_stop="63409" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="63410" i_stop="64064" i_length="655"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64065" e_stop="64135" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64136" i_stop="64416" i_length="281"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="64417" e_stop="64503" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.986">
            <gDNA_intron_boundary i_start="64504" i_stop="64744" i_length="241"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64745" e_stop="64806" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61915" stop="62054"/>
              <exon start="62731" stop="63011"/>
              <exon start="63302" stop="63316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61920" stop="62054"/>
              <exon start="62731" stop="63009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61979" stop="62054"/>
              <exon start="62731" stop="63011"/>
              <exon start="63302" stop="63409"/>
              <exon start="64065" stop="64135"/>
              <exon start="64417" stop="64503"/>
              <exon start="64745" stop="64806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG : CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG : GCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAG : CAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG : GCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAG : GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTA</gDNA_template>
            <first_frame> K  T  H  F  *  P  *  F  C  T  E  E  K  N  *  G  K  N  V  V  E  R  C  R  N  M  K  V  M  E  K  I  *  R  I  M  V  L  L  L  T  V  T  P  S  L  S :   I  L  L  V  T  P  R  K  K  G  A  H  Q  E  A  G  R  R  R  G  R  K  G  V  I  K  T  G  T  G  T  G  I  E  I  E  I  E  T  G  T  E  V  R  K  G  T  K  I  G  I  G  T  E  R  G  R  R  T  V  I  V  I  T  E  I  V  I  G  I  G  V  I  G  G  R  G  S  E  I  E  M  K  M  I  F  S  E  L  E  I  T  I   : G  E  E  T  M  T  K  I  E  R  T  D  R  D  T  S  L  A  L  G  V  D  P  S  I  D  Q  G  L  D  H  G  H  H  L  R   : A  K  G  S  V  V  L  I  W  H  L  P  P  V  H  C  Y  L  A  L  L  M  L  Q  :  A  M  L  G  Y  L  P  H  C  A  D  N  G  R  E  P  T  S  V  A  Y  M  Y  K  E  E  S  I  Q  :  V  K  F  L  G  P  L  T  H  Q  Y  L  E  C  F  L  T  C  F  L   </first_frame>
            <second_frame>  K  L  I  S  S  P  S  F  V  L  K  R  K  I  R  V  K  T  *  W  N  D  A  G  I  *  R  *  W  R  R  Y  R  E  *  W  F  F  S  L  Q  *  L  Q  V  S   : A  Y  F  S  *  P  R  E  R  K  G  L  I  K  K  Q  G  E  G  E  G  E  R  A  *  *  R  P  G  Q  G  Q  E  *  R  *  R  *  R  Q  G  Q  R  *  G  K  G  Q  R  *  G  *  G  Q  R  E  G  E  G  P  *  S  S  S  Q  R  S  S  *  G  S  E  *  *  E  G  E  D  Q  R  S  R  *  R  *  S  S  A  N  S  R  L  R  *  :  A  K  R  Q  *  Q  R  *  R  G  P  T  E  T  Q  A  *  L  *  G  *  I  R  A  *  I  K  V  *  I  T  V  T  I  *  E  :  Q  K  D  Q  W  F  *  Y  G  T  S  H  Q  C  I  A  I  W  R  Y  *  C  C  R :   Q  C  W  A  T  C  P  T  V  L  T  M  G  V  S  R  L  L  *  L  I  C  T  R  K  N  R  Y  R :   S  S  S  W  D  H  *  P  I  N  T  W  N  V  F  *  H  V  S  S  </second_frame>
            <third_frame>   N  S  F  L  A  L  V  L  Y  *  R  E  K  L  G  *  K  R  S  G  T  M  Q  E  Y  E  G  N  G  E  D  I  E  N  N  G  S  S  P  Y  S  D  S  K  S  Q  :  H  T  S  R  D  P  E  K  E  R  G  S  S  R  S  R  E  K  E  R  E  K  G  R  D  K  D  R  D  R  D  R  N  R  D  R  D  R  D  R  D  R  G  K  E  R  D  K  D  R  D  R  D  R  E  R  E  K  D  R  D  R  H  H  R  D  R  H  R  D  R  S  D  R  R  E  R  I  R  D  R  D  E  D  D  L  Q  R  T  R  D  Y  D  R :   R  R  D  N  D  K  D  R  E  D  R  Q  R  H  K  P  S  S  R  G  R  S  E  H  R  S  R  S  R  S  R  S  P  S  K  S :   K  R  I  S  G  F  D  M  A  P  P  T  S  A  L  L  S  G  A  T  D  V  A   : G  N  V  G  L  L  A  P  L  C  *  Q  W  A  *  A  D  F  C  S  L  Y  V  Q  G  R  I  D  T   : G  Q  V  P  G  T  T  N  P  S  I  P  G  M  F  S  N  M  F  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62014" stop="62054"/>
                    <exon start="62731" stop="63011"/>
                    <exon start="63302" stop="63409"/>
                    <exon start="64065" stop="64135"/>
                    <exon start="64417" stop="64503"/>
                    <exon start="64745" stop="64804"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIMVLLLTVTPSLSILLVTPRKKGAHQEAGRRRGRKGVIKTGTGTGIEIEIETGTEVRKGTKIGIGTERGRRTVIVITEIVIGIGVIGGRGSEIEMKMIFSELEITIGEETMTKIERTDRDTSLALGVDPSIDQGLDHGHHLRAKGSVVLIWHLPPVHCYLALLMLQAMLGYLPHCADNGREPTSVAYMYKEESIQVKFLGPLTHQYLECFLTCFL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61965" stop="62054"/>
                    <exon start="62731" stop="63011"/>
                    <exon start="63302" stop="63409"/>
                    <exon start="64065" stop="64135"/>
                    <exon start="64417" stop="64448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSGTMQEYEGNGEDIENNGSSPYSDSKSQHTSRDPEKERGSSRSREKEREKGRDKDRDRDRNRDRDRDRDRGKERDKDRDRDREREKDRDRHHRDRHRDRSDRRERIRDRDEDDLQRTRDYDRRRDNDKDREDRQRHKPSSRGRSEHRSRSRSRSPSKSKRISGFDMAPPTSALLSGATDVAGNVGLLAPLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="72499" PGL_stop="73214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72499" e_stop="73079"/>
            <exon e_start="73138" e_stop="73214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="72499" e_stop="73079" e_length="581"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73080" i_stop="73137" i_length="58"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73138" e_stop="73214" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72499" stop="73079"/>
              <exon start="73138" stop="73214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCCAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAG : ATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTG</gDNA_template>
            <first_frame> F  S  H  *  I  S  S  L  S  L  Y  *  F  P  S  R  R  L  A  L  S  Q  L  L  L  I  F  I  E  F  F  F  I  T  F  T  Y  K  Q  T  H  L  L  E  L  S  D  F  P  G  R  K  F  T  P  V  I  D  F  L  V  I  L  E  S  G  F  F  S  *  F  L  C  Y  G  D  L  L  F  *  L  G  L  I  K  T  G  S  W  V  Y  E  R  K  K  N  E  K  A  R  L  T  G  R  Y  G  E  K  R  E  S  I  D  S  P  K  K  R  L  I  S  K  R  F  F  *  H  K  C  S  K  D  L  L  F  *  A  T  P  P  P  Q  K  K  K  K  K  H  A  G  R  P  R  *  L  I  R  H  E  R  F  Y  R  L  R  *  S  K  R  F  V  F  R  *  S  S  S  S  S  E  R  I  S  Q  E  E  T  E  S  S  W  D  A  R :   F  D  F  L  F  L  V  A  L  I  R  S  R  C  R  G  Y  C  F  V  T  N  N  F  A  </first_frame>
            <second_frame>  F  H  I  K  F  P  L  F  L  S  I  D  F  R  A  A  D  L  R  C  H  N  C  F  S  F  S  S  S  F  S  S  L  L  L  L  I  S  K  P  I  Y  S  N  L  A  T  F  P  A  E  S  S  R  R  *  L  T  F  W  *  F  W  N  L  G  F  S  A  N  F  Y  V  M  G  I  C  Y  F  S  L  V  *  S  K  L  V  V  G  C  M  K  E  R  K  T  K  K  Q  D  *  L  V  D  T  A  K  R  E  K  V  L  T  P  P  R  K  D  *  Y  Q  K  G  F  F  N  I  N  V  L  K  I  C  F  F  E  Q  P  P  P  P  K  K  K  K  K  N  M  P  A  D  P  D  N  S  S  A  M  N  D  S  T  G  S  G  E  A  S  V  S  S  S  G  N  Q  V  V  P  L  K  E  S  A  K  K  K  R  N  L  P  G  M  P   : D  L  I  F  C  F  W  L  L  *  L  D  P  D  A  E  V  I  A  L  S  P  T  T  L  L </second_frame>
            <third_frame>   F  T  L  N  F  L  S  F  S  L  L  I  S  E  P  P  T  C  V  V  T  T  A  S  H  F  H  R  V  F  L  H  Y  F  Y  L  *  A  N  P  F  T  R  T  *  R  L  S  R  Q  K  V  H  A  G  D  *  L  S  G  D  F  G  I  W  V  F  Q  L  I  S  M  L  W  G  F  A  I  L  A  W  F  D  Q  N  W  *  L  G  V  *  K  K  E  K  R  K  S  K  I  D  W  *  I  R  R  K  E  R  K  Y  *  L  P  Q  E  K  I  D  I  K  K  V  F  L  T  *  M  F  *  R  F  A  F  L  S  N  P  P  P  P  K  K  K  K  K  T  C  R  P  T  Q  I  T  H  P  P  *  T  I  L  Q  A  Q  V  K  Q  A  F  R  L  Q  V  I  K  *  F  L  *  K  N  Q  P  R  R  N  G  I  F  L  G  C  Q  :  I  *  F  S  V  F  G  C  F  D  *  I  P  M  Q  R  L  L  L  C  H  Q  Q  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72857" stop="73079"/>
                    <exon start="73138" stop="73166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQKGFFNINVLKICFFEQPPPPKKKKKNMPADPDNSSAMNDSTGSGEASVSSSGNQVVPLKESAKKKRNLPGMPDLIFCFWLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="73878" PGL_stop="74832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73878" e_stop="73924"/>
            <exon e_start="74387" e_stop="74832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="0.979"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="73878" e_stop="73924" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="73925" i_stop="74386" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="74387" e_stop="74832" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73878" stop="73924"/>
              <exon start="74387" stop="74832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73881" stop="73924"/>
              <exon start="74387" stop="74744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAG : AATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATG</gDNA_template>
            <first_frame> T  V  N  C  R  N  V  I  C  F  L  R  S  K  S  R :   I  A  G  E  S  S  H  K  F  C  W  S  C  Y  E  A  S  C  G  G  S  S  S  G  S  K  L  D  W  K  L  *  Q  L  L  *  *  W  K  *  *  Q  Q  C  L  W  K  F  V  C  F  I  N  S  F  G  K  S  A  I  S  S  S  C  F  F  *  Y  I  S  S  H  G  A  *  A  H  S  *  D  G  T  T  F  I  Y  R  T  N  I  S  R  P  S  D  E  S  Q  F  V  N  F  *  T  S  W  S  R  T  E  A  I  C  S  R  T  T  T  S  Y  V  G  N  S  I  T  A  E  G  S  S  D  G  C  S  S  N  Q  L  I  V  L  E  G  H  W  G  Y  </first_frame>
            <second_frame>  P  S  T  A  V  M  S  F  A  S  S  V  Q  N  R   : E  L  R  E  N  P  V  T  N  S  A  G  A  A  T  K  Q  V  V  E  E  A  A  V  V  A  S  L  T  G  N  C  S  S  S  C  S  N  G  S  S  S  S  N  V  F  G  S  L  F  A  S  S  T  A  S  G  S  L  P  S  Q  A  P  V  F  S  D  I  F  R  A  M  A  P  E  H  T  L  E  M  A  P  P  S  S  T  E  P  I  S  L  G  L  A  M  S  H  S  S  S  I  F  R  P  A  G  Q  E  R  R  Q  Y  A  P  A  P  Q  P  A  M  S  A  T  A  L  L  Q  K  A  A  Q  M  G  A  A  A  T  S  S  S  F  L  R  G  I  G  V  M </second_frame>
            <third_frame>   R  Q  L  P  *  C  H  L  L  P  P  F  K  I  E  :  N  C  G  R  I  Q  S  Q  I  L  L  E  L  L  R  S  K  L  W  R  K  Q  Q  W  *  Q  A  *  L  E  T  V  A  A  L  V  V  M  E  V  V  A  A  M  S  L  E  V  C  L  L  H  Q  Q  L  R  E  V  C  H  L  K  L  L  F  F  L  I  Y  F  E  P  W  R  L  S  T  L  L  R  W  H  H  L  H  L  Q  N  Q  Y  L  S  A  *  R  *  V  T  V  R  Q  F  L  D  Q  L  V  K  N  G  G  N  M  L  P  H  H  N  Q  L  C  R  Q  Q  H  Y  C  R  R  Q  L  R  W  V  Q  Q  Q  P  A  H  R  S  *  G  A  L  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73879" stop="73924"/>
                    <exon start="74387" stop="74832"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTAVMSFASSVQNRELRENPVTNSAGAATKQVVEEAAVVASLTGNCSSSCSNGSSSSNVFGSLFASSTASGSLPSQAPVFSDIFRAMAPEHTLEMAPPSSTEPISLGLAMSHSSSIFRPAGQERRQYAPAPQPAMSATALLQKAAQMGAAATSSSFLRGIGVM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="74998" PGL_stop="75600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74998" e_stop="75600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="74998" e_stop="75600" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74998" stop="75600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74999" stop="75600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75010" stop="75600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAAAAAAGTTTAAA</gDNA_template>
            <first_frame> P  T  L  D  L  L  G  L  G  M  A  A  S  V  G  P  S  P  G  L  S  A  L  L  T  S  M  G  S  N  L  D  M  V  T  S  A  G  S  F  G  S  A  D  F  S  G  K  D  L  G  R  N  S  *  Y  L  R  V  R  F  N  L  F  C  I  G  Q  *  I  S  L  D  A  A  K  N  I  L  A  S  S  Q  P  Q  R  F  E  H  R  M  A  G  G  K  K  A  V  G  H  F  *  D  C  S  T  V  S  F  V  *  E  K  *  K  G  F  F  S  A  V  Q  *  K  L  N  V  *  L  Y  *  N  S  S  A  F  C  Y  R  *  S  C  *  C  V  *  Y  I  I  C  Y  K  H  I  *  P  R  E  A  H  L  V  G  I  F  I  K  W  Y  L  Y  F  R  Q  C  K  F  L  *  N  L  Y  N  S  D  A  *  L  M  Q  Q  C  *  T  L  *  A  K  K  F  K </first_frame>
            <second_frame>  P  L  L  T  S  L  D  *  E  W  Q  L  V  S  V  H  R  L  D  Y  L  P  F  *  H  P  W  V  A  I  L  T  W  *  L  Q  L  D  H  L  V  V  Q  I  S  V  G  K  T  W  E  E  I  H  D  I  L  E  S  G  L  I  Y  S  V  *  D  N  E  F  H  L  M  Q  Q  K  T  Y  W  Q  A  L  S  P  K  D  L  S  I  G  W  Q  E  E  R  R  Q  L  D  T  F  K  I  V  L  L  S  P  L  C  R  K  S  R  K  V  F  F  L  L  Y  S  R  S  *  M  Y  S  C  I  K  T  P  L  L  F  V  T  D  E  A  V  N  V  F  S  I  *  F  A  I  S  I  F  N  Q  E  R  L  I  *  W  E  F  L  S  N  G  I  S  I  S  D  S  A  N  F  Y  K  I  C  I  I  Q  M  H  N  *  C  S  S  V  K  L  F  E  Q  K  S  L   </second_frame>
            <third_frame>   H  S  *  P  P  W  I  R  N  G  S  *  C  R  S  I  A  W  I  I  C  P  F  N  I  H  G  *  Q  S  *  H  G  D  F  S  W  I  I  W  *  C  R  F  Q  W  E  R  L  G  K  K  F  M  I  S  *  S  Q  V  *  F  I  L  Y  R  T  M  N  F  T  *  C  S  K  K  H  I  G  K  L  S  A  P  K  I  *  A  *  D  G  R  R  K  E  G  S  W  T  L  L  R  L  F  Y  C  L  L  C  V  G  K  V  E  R  F  F  F  C  C  T  V  E  V  E  C  I  A  V  L  K  L  L  C  F  L  L  Q  M  K  L  L  M  C  L  V  Y  N  L  L  *  A  Y  L  T  K  R  G  S  S  S  G  N  F  Y  Q  M  V  S  L  F  Q  T  V  Q  I  F  I  K  F  V  *  F  R  C  I  T  N  A  A  V  L  N  S  L  S  K  K  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0106H06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="80014" PGL_stop="79253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80014" e_stop="79253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="80014" e_stop="79253" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80014" stop="79253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79886" stop="79337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</gDNA_template>
            <first_frame> T  K  R  G  R  A  S  K  E  R  R  G  R  S  R  K  K  K  A  G  G  G  R  I  K  E  R  G  E  S  K  K  K  A  T  G  G  S  K  E  E  R  G  G  R  S  S  K  K  A  T  *  G  R  S  R  E  R  G  R  G  S  K  K  D  R  G  G  R  S  T  K  R  G  R  R  S  K  E  N  T  T  G  G  R  S  R  E  S  K  E  K  R  R  R  S  R  N  K  K  E  G  G  G  G  G  R  I  K  E  T  R  G  G  I  K  E  E  *  R  R  G  S  K  R  G  R  E  G  K  A  R  G  S  *  K  T  R  R  S  *  E  T  G  G  R  N  R  R  E  A  S  T  R  R  N  R  G  R  G  A  R  P  T  *  N  E  R  I  F  L  K  L  A  Y  E  C  V  V  *  L  V  Y  S  A  S  S  Q  E  L  N  S  L  Y  V  F  V  *  S  H  V  C  V  R  L  F  I  Y  F  C  C  H  I  Y  E  F  M  *  *  H  R  N  K  F  S  *  I  T  F  P  W  Q  V  S  S  N  V  A  E  G  V  R  M  L  S  G  *  K  Q  F  I  H  L  N </first_frame>
            <second_frame>  Q  R  E  A  E  Q  A  R  R  E  E  E  E  A  E  K  R  R  Q  E  E  E  E  S  R  R  E  E  K  A  R  R  R  Q  Q  E  E  A  R  R  R  E  E  E  E  A  A  K  R  Q  H  E  E  E  A  E  R  E  A  E  E  A  R  R  I  E  E  E  E  A  Q  R  E  A  E  E  A  R  R  I  Q  Q  E  E  E  A  E  R  A  R  R  R  E  E  E  A  E  T  R  R  K  E  E  E  E  E  E  S  R  R  Q  E  E  E  S  R  R  S  E  E  E  A  A  R  E  A  E  R  E  R  Q  E  E  A  E  R  Q  E  E  A  R  R  R  E  E  E  T  E  E  R  H  Q  Q  E  E  T  E  E  E  E  P  G  Q  P  E  M  N  G  Y  S  S  N  *  P  M  S  V  L  C  N  *  C  T  Q  Q  V  L  R  S  *  I  V  S  T  F  L  Y  N  L  M  C  V  Y  V  F  S  F  T  F  A  V  I  F  M  S  L  C  N  N  T  E  T  S  F  H  R  S  L  F  P  G  K  S  P  A  M  *  Q  K  V  L  G  C  Y  L  D  E  S  S  S  Y  I  *   </second_frame>
            <third_frame>   K  E  R  Q  S  K  Q  G  E  K  R  K  K  Q  K  K  E  G  R  R  R  K  N  Q  G  E  R  R  K  Q  E  E  G  N  R  R  K  Q  G  G  E  R  R  K  K  Q  Q  K  G  N  M  R  K  K  Q  R  E  R  Q  R  K  Q  E  G  *  R  R  K  K  H  K  E  R  Q  K  K  Q  G  E  Y  N  R  R  K  K  Q  R  E  Q  G  E  E  K  K  K  Q  K  Q  E  G  R  R  R  R  R  K  N  Q  G  D  K  R  R  N  Q  G  G  V  K  K  R  Q  Q  E  R  Q  R  G  K  G  K  R  K  L  K  D  K  K  K  L  G  D  G  R  K  K  Q  K  R  G  I  N  K  K  K  P  R  K  R  S  Q  A  N  L  K  *  T  D  I  P  Q  T  S  L  *  V  C  C  V  T  S  V  L  S  K  F  S  G  A  E  *  S  L  R  F  C  I  I  S  C  V  C  T  S  F  H  L  L  L  L  S  Y  L  *  V  Y  V  I  T  P  K  Q  V  F  I  D  H  F  S  L  A  S  L  Q  Q  C  S  R  R  C  *  D  V  I  W  M  K  A  V  H  T  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80013" stop="79495"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREAEQARREEEEAEKRRQEEEESRREEKARRRQQEEARRREEEEAAKRQHEEEAEREAEEARRIEEEEAQREAEEARRIQQEEEAERARRREEEAETRRKEEEEEESRRQEEESRRSEEEAAREAERERQEEAERQEEARRREEETEERHQQEETEEEEPGQPEMNGYSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="90959" PGL_stop="92879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90959" e_stop="92879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="90959" e_stop="92879" e_length="1921"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90959" stop="91832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90959" stop="91788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91384" stop="91808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91385" stop="91887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91738" stop="92467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92314" stop="92879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92316" stop="92878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434467" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAGCCATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTCCTTCATGAAAGAGTTAGCCGACAAAGCCGAGTGCCGTAAAGCCAACGCGCCGATCCTTAGAATTACGGCTCTAGTTCCTGAAGAGTACGCTGTGGAATCAAGGTTAATTAGAGAAAATTTAACCCAATTTGCTCGTGAACTCAATATCGGTTTCGAAATTGATTTTGTCCTAATTCGTACATTCGAATTGTTATCCTTCAAAGCGATAAAGTTCATGGAGGGAGAGAAGACAGCGGTGCTTTTATCTCCCGCTATCTTCCGACGGGTCGGGTCAGGGTTTGTAAATGAACTCCGTCGAATATCCCCTAACGTGGTGGTACACGTGGACAGCGAAGGACTTATGGGTTACGGTGCAATGTCTTTCCGGCAGACAGTAATCGACGGGCTGGAATTTTACTCTACACTACTGGAATCACTGGAGGCAGCAAATATCGGTGGTGGAAATTGCGGGGATTGGATGAGAAAAATAGAGAATTTCGTGCTGTTTCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGGTGGAGGATCGTGGAGGGATGCCATGGTGGATGCCGGATTCCGGCCGGTTGGACTAAGCCAGTTTGCCGATTTTCAAGCAGATTGTTTATTGGGTAGGGTACAGGTAAGAGGATTCCACGTGGCAAAGAGACAAGCAGAGATGTTGCTTTGCTGGCATGACAGGGCCCTAGTAGCCACGTCAGCTTGGAGGTGTTAATAATAATAAATCTAACCCTAAACTAGTTTTAATTTAATAATAGCAGTGATTTGGATCTTTAGCTGTATGGTTCAGTTTTAGGGGTTGGCTTAGCATATATAACAATAGATTAAGAAGAAGAAAAAAAGAAAAAACTCAAAAGAAAGTTGCATGGTCCTTTTCTTTTCTTTCTCCAATTGTGTTGGTAACTATCTATCTTTTGTAATTTTGTAGCTTAATTTGGAGTCTCAAGGTTGGTGTCTCTAATTAGTGGATAATTGCAATTTGTAACTCATTCACTATTTAA</gDNA_template>
            <first_frame> Q  F  S  P  F  F  R  E  M  K  V  P  F  S  T  N  D  N  V  S  S  K  P  L  V  N  S  N  N  S  F  T  F  P  A  A  T  N  G  S  N  L  C  Y  E  P  K  S  V  L  E  L  R  R  S  P  S  P  I  V  D  K  Q  I  I  T  T  N  P  D  L  S  A  L  C  G  G  E  D  P  L  Q  L  G  D  H  V  L  S  N  F  E  D  W  D  S  L  M  R  E  L  G  L  H  D  D  S  A  S  L  S  K  T  N  P  L  T  H  S  E  S  L  T  Q  F  H  N  L  S  E  F  S  A  E  S  N  Q  F  P  S  P  D  F  S  F  S  D  T  N  F  P  Q  Q  F  P  T  V  N  Q  A  S  F  I  N  A  L  D  L  S  G  D  I  H  Q  N  W  S  V  G  F  D  Y  V  D  E  L  I  R  F  A  E  C  F  E  T  N  A  F  Q  L  A  H  V  I  L  A  R  L  N  Q  R  L  R  S  A  A  G  K  P  L  Q  R  A  A  F  Y  F  K  E  A  L  Q  A  Q  L  A  G  S  A  R  Q  T  R  S  S  S  S  S  D  V  I  Q  T  I  K  S  Y  K  I  L  S  N  I  S  P  I  P  M  F  S  S  F  T  A  N  Q  A  V  L  E  A  V  D  G  S  M  L  V  H  V  I  D  F  D  I  G  L  G  G  H  W  A  S  F  M  K  E  L  A  D  K  A  E  C  R  K  A  N  A  P  I  L  R  I  T  A  L  V  P  E  E  Y  A  V  E  S  R  L  I  R  E  N  L  T  Q  F  A  R  E  L  N  I  G  F  E  I  D  F  V  L  I  R  T  F  E  L  L  S  F  K  A  I  K  F  M  E  G  E  K  T  A  V  L  L  S  P  A  I  F  R  R  V  G  S  G  F  V  N  E  L  R  R  I  S  P  N  V  V  V  H  V  D  S  E  G  L  M  G  Y  G  A  M  S  F  R  Q  T  V  I  D  G  L  E  F  Y  S  T  L  L  E  S  L  E  A  A  N  I  G  G  G  N  C  G  D  W  M  R  K  I  E  N  F  V  L  F  P  K  I  V  D  M  I  G  A  V  G  R  R  G  G  G  G  S  W  R  D  A  M  V  D  A  G  F  R  P  V  G  L  S  Q  F  A  D  F  Q  A  D  C  L  L  G  R  V  Q  V  R  G  F  H  V  A  K  R  Q  A  E  M  L  L  C  W  H  D  R  A  L  V  A  T  S  A  W  R  C  *  *  *  *  I  *  P  *  T  S  F  N  L  I  I  A  V  I  W  I  F  S  C  M  V  Q  F  *  G  L  A  *  H  I  *  Q  *  I  K  K  K  K  K  R  K  N  S  K  E  S  C  M  V  L  F  F  S  F  S  N  C  V  G  N  Y  L  S  F  V  I  L  *  L  N  L  E  S  Q  G  W  C  L  *  L  V  D  N  C  N  L  *  L  I  H  Y  L  </first_frame>
            <second_frame>  N  S  L  L  F  S  E  K  *  K  C  P  F  P  L  M  I  T  *  V  L  S  H  W  L  T  A  T  T  A  L  L  F  Q  P  L  P  T  V  L  I  C  A  T  N  L  S  Q  C  S  S  S  V  V  A  Q  V  L  *  L  I  S  R  L  *  Q  R  I  L  I  C  L  L  F  V  V  V  K  I  L  F  N  *  E  I  M  F  *  V  T  L  K  I  G  I  L  *  *  E  N  L  A  C  T  T  I  L  L  R  F  Q  K  R  I  L  S  P  T  A  N  R  *  L  S  S  I  I  S  P  S  F  Q  L  N  R  I  S  F  L  V  L  I  F  L  S  Q  T  L  I  S  L  S  S  F  R  R  *  I  R  Q  V  S  S  T  P  L  I  S  P  G  I  S  T  R  I  G  A  *  D  L  I  M  W  M  N  S  F  V  L  L  S  V  S  K  Q  T  L  S  N  S  H  M  *  Y  W  H  A  S  I  N  G  S  D  P  Q  Q  E  N  L  S  N  E  L  P  F  T  S  R  K  H  F  K  R  S  S  P  D  Q  L  G  K  L  V  L  Q  V  P  P  T  *  F  K  R  L  N  L  I  K  Y  C  Q  I  F  L  R  S  L  C  S  L  A  S  R  R  I  R  P  C  L  R  Q  L  T  A  P  C  *  S  T  S  S  I  S  T  S  D  L  V  V  T  G  L  P  S  *  K  S  *  P  T  K  P  S  A  V  K  P  T  R  R  S  L  E  L  R  L  *  F  L  K  S  T  L  W  N  Q  G  *  L  E  K  I  *  P  N  L  L  V  N  S  I  S  V  S  K  L  I  L  S  *  F  V  H  S  N  C  Y  P  S  K  R  *  S  S  W  R  E  R  R  Q  R  C  F  Y  L  P  L  S  S  D  G  S  G  Q  G  L  *  M  N  S  V  E  Y  P  L  T  W  W  Y  T  W  T  A  K  D  L  W  V  T  V  Q  C  L  S  G  R  Q  *  S  T  G  W  N  F  T  L  H  Y  W  N  H  W  R  Q  Q  I  S  V  V  E  I  A  G  I  G  *  E  K  *  R  I  S  C  C  F  L  R  *  L  I  *  S  E  Q  *  G  G  V  E  V  E  D  R  G  G  M  P  W  W  M  P  D  S  G  R  L  D  *  A  S  L  P  I  F  K  Q  I  V  Y  W  V  G  Y  R  *  E  D  S  T  W  Q  R  D  K  Q  R  C  C  F  A  G  M  T  G  P  *  *  P  R  Q  L  G  G  V  N  N  N  K  S  N  P  K  L  V  L  I  *  *  *  Q  *  F  G  S  L  A  V  W  F  S  F  R  G  W  L  S  I  Y  N  N  R  L  R  R  R  K  K  E  K  T  Q  K  K  V  A  W  S  F  S  F  L  S  P  I  V  L  V  T  I  Y  L  L  *  F  C  S  L  I  W  S  L  K  V  G  V  S  N  *  W  I  I  A  I  C  N  S  F  T  I  * </second_frame>
            <third_frame>   I  L  S  F  F  Q  R  N  E  S  A  L  F  H  *  *  *  R  K  F  *  A  I  G  *  Q  Q  Q  Q  L  Y  F  S  S  R  Y  Q  R  F  *  F  V  L  R  T  *  V  S  A  R  A  P  S  *  P  K  S  Y  S  *  *  A  D  Y  N  N  E  S  *  F  V  C  S  L  W  W  *  R  S  S  S  I  R  R  S  C  S  E  *  L  *  R  L  G  F  F  D  E  R  T  W  L  A  R  R  F  C  F  A  F  K  N  E  S  S  H  P  Q  R  I  A  D  S  V  P  *  S  L  R  V  F  S  *  I  E  S  V  S  *  S  *  F  F  F  L  R  H  *  F  P  S  A  V  S  D  G  E  S  G  K  F  H  Q  R  P  *  S  L  R  G  Y  P  P  E  L  E  R  R  I  *  L  C  G  *  T  H  S  F  C  *  V  F  R  N  K  R  F  P  T  R  T  C  D  T  G  T  P  Q  S  T  A  Q  I  R  S  R  K  T  S  P  T  S  C  L  L  L  Q  G  S  T  S  S  A  A  R  R  I  S  S  A  N  S  F  F  K  F  L  R  R  N  S  N  D  *  I  L  *  N  I  V  K  Y  F  S  D  P  Y  V  L  *  L  H  G  E  S  G  R  A  *  G  S  *  R  L  H  A  S  P  R  H  R  F  R  H  R  T  W  W  S  L  G  F  L  H  E  R  V  S  R  Q  S  R  V  P  *  S  Q  R  A  D  P  *  N  Y  G  S  S  S  *  R  V  R  C  G  I  K  V  N  *  R  K  F  N  P  I  C  S  *  T  Q  Y  R  F  R  N  *  F  C  P  N  S  Y  I  R  I  V  I  L  Q  S  D  K  V  H  G  G  R  E  D  S  G  A  F  I  S  R  Y  L  P  T  G  R  V  R  V  C  K  *  T  P  S  N  I  P  *  R  G  G  T  R  G  Q  R  R  T  Y  G  L  R  C  N  V  F  P  A  D  S  N  R  R  A  G  I  L  L  Y  T  T  G  I  T  G  G  S  K  Y  R  W  W  K  L  R  G  L  D  E  K  N  R  E  F  R  A  V  S  *  D  S  *  Y  D  R  S  S  R  A  A  W  R  W  R  I  V  E  G  C  H  G  G  C  R  I  P  A  G  W  T  K  P  V  C  R  F  S  S  R  L  F  I  G  *  G  T  G  K  R  I  P  R  G  K  E  T  S  R  D  V  A  L  L  A  *  Q  G  P  S  S  H  V  S  L  E  V  L  I  I  I  N  L  T  L  N  *  F  *  F  N  N  S  S  D  L  D  L  *  L  Y  G  S  V  L  G  V  G  L  A  Y  I  T  I  D  *  E  E  E  K  K  K  K  L  K  R  K  L  H  G  P  F  L  F  F  L  Q  L  C  W  *  L  S  I  F  C  N  F  V  A  *  F  G  V  S  R  L  V  S  L  I  S  G  *  L  Q  F  V  T  H  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90959" stop="92593"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1632</number_coding_nucleotides>
                  <number_encoded_amino_acids>544</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSPFFREMKVPFSTNDNVSSKPLVNSNNSFTFPAATNGSNLCYEPKSVLELRRSPSPIVDKQIITTNPDLSALCGGEDPLQLGDHVLSNFEDWDSLMRELGLHDDSASLSKTNPLTHSESLTQFHNLSEFSAESNQFPSPDFSFSDTNFPQQFPTVNQASFINALDLSGDIHQNWSVGFDYVDELIRFAECFETNAFQLAHVILARLNQRLRSAAGKPLQRAAFYFKEALQAQLAGSARQTRSSSSSDVIQTIKSYKILSNISPIPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAECRKANAPILRITALVPEEYAVESRLIRENLTQFARELNIGFEIDFVLIRTFELLSFKAIKFMEGEKTAVLLSPAIFRRVGSGFVNELRRISPNVVVHVDSEGLMGYGAMSFRQTVIDGLEFYSTLLESLEAANIGGGNCGDWMRKIENFVLFPKIVDMIGAVGRRGGGGSWRDAMVDAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="103297" PGL_stop="93155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103297" e_stop="103162"/>
            <exon e_start="98959" e_stop="98836"/>
            <exon e_start="98700" e_stop="98653"/>
            <exon e_start="98566" e_stop="98480"/>
            <exon e_start="98364" e_stop="98275"/>
            <exon e_start="98147" e_stop="97987"/>
            <exon e_start="97902" e_stop="97848"/>
            <exon e_start="97714" e_stop="97666"/>
            <exon e_start="97583" e_stop="97378"/>
            <exon e_start="96567" e_stop="96490"/>
            <exon e_start="93969" e_stop="93844"/>
            <exon e_start="93561" e_stop="93155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.884" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.631" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.947" e_score="0.985"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.769" e_score="1.000"/>
          <exon-only e_score="0.813"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="103297" e_stop="103162" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103161" i_stop="98960" i_length="4202"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="98959" e_stop="98836" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.884">
            <gDNA_intron_boundary i_start="98835" i_stop="98701" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98700" e_stop="98653" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="98652" i_stop="98567" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="98566" e_stop="98480" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.631">
            <gDNA_intron_boundary i_start="98479" i_stop="98365" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98364" e_stop="98275" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="98274" i_stop="98148" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98147" e_stop="97987" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="97986" i_stop="97903" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="97902" e_stop="97848" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.992">
            <gDNA_intron_boundary i_start="97847" i_stop="97715" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="97714" e_stop="97666" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97665" i_stop="97584" i_length="82"/>
          </intron>
          <exon e_serial="9" e_score="0.985">
            <gDNA_exon_boundary e_start="97583" e_stop="97378" e_length="206"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.947">
            <gDNA_intron_boundary i_start="97377" i_stop="96568" i_length="810"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96567" e_stop="96490" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96489" i_stop="93970" i_length="2520"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="93969" e_stop="93844" e_length="126"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.769">
            <gDNA_intron_boundary i_start="93843" i_stop="93562" i_length="282"/>
          </intron>
          <exon e_serial="12" e_score="0.813">
            <gDNA_exon_boundary e_start="93561" e_stop="93155" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103297" stop="103162"/>
              <exon start="98959" stop="98836"/>
              <exon start="98700" stop="98653"/>
              <exon start="98566" stop="98480"/>
              <exon start="98364" stop="98351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98355" stop="98275"/>
              <exon start="98147" stop="97987"/>
              <exon start="97902" stop="97848"/>
              <exon start="97714" stop="97666"/>
              <exon start="97583" stop="97378"/>
              <exon start="96567" stop="96490"/>
              <exon start="93969" stop="93844"/>
              <exon start="93561" stop="93155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98056" stop="97987"/>
              <exon start="97902" stop="97848"/>
              <exon start="97714" stop="97666"/>
              <exon start="97583" stop="97378"/>
              <exon start="96567" stop="96490"/>
              <exon start="93969" stop="93844"/>
              <exon start="93561" stop="93479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98056" stop="97987"/>
              <exon start="97902" stop="97848"/>
              <exon start="97714" stop="97666"/>
              <exon start="97583" stop="97378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTTTCTTTATGGCTGCTCTTTGTTTAGGATAATTTTTTTCTTCTTAAATCTCTTTGGGGGTGGGATAACAAACTTAACTTTTTGGAAAATCCGACTTGGAACCTTCTTGTTCCACCTCAGATTCACTACACAG : CCTTTCGCTGAGCAAGCCATTTTTGGATTATTCCCGTGGATACCTGCATATACAATTGATTGACCCAATGGGAGCTGGGGAAGAGAGCACTCCTACAAAGACTTCAAAGCCTCCTTTAACTCAG : GAGACACCAACCGCACCTTCATATCCTGATTGGTCAAGCTCTATGCAG : GCTTATTATAGTGCTGGAGCTACTCCTCCTTTTTTTGCCTCACCTGTTGCTTCTCCTGCTCCCCACCCATACATGTGGGGAGGTCAG : CATCCTCTTATGCCTCCTTATGGGACTCCAGTTCCATATCCAGCTTTATATCCTCCTGCCGGAGTTTATGCTCATCCTAACATTGCCACG : CCGGCTCCAAATTCTGTGCCGGCAAATCCTGAAGCAGATGGGAAGGGGCCTGAAGGAAAGGATCGGAATTCAAGTAAAAAGTTAAAGGTCTGTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAG : TGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAAT : GAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATG : GAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG : GAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCGAGGCTCCGCAAGCAG : GCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCTTTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTTAATTAAG : GAAGAGTTAACGCTACTTTGTGGACCAGACGTTGTGTCTAAGCTGGAGAGAAACGATAATGTCACACGTATTCAATCTAATGTTGAAGAAGCTAGTTAAGGAGAAGTGGAAAAGCCAGGACTGAGTAGGTGATTTTTGTTACAAAGTGCTCACAGATCATTGCCTTTTTGGTGCAGTGTTTGTTGTCCTACTAACCTATACCCTCCTTTAACTCCCTTTCTGAGTATGACTGTAACATATATTTCTTATGATTCTAACCCCAGTGTTAAAAGAGTCTTGAGTCTGTTTAACTTAGTCTTTAAATTAACTTCAGTAGCTCAGAAAGTCTTCAAGTGAATGTTAACGAGGCACCCAACCACATGGGTTGTGGTACCCTGGTGGAATTGCTTTAGCTTTAACTAGATGTC</gDNA_template>
            <first_frame> L  F  S  L  W  L  L  F  V  *  D  N  F  F  L  L  K  S  L  W  G  W  D  N  K  L  N  F  L  E  N  P  T  W  N  L  L  V  P  P  Q  I  H  Y  T   : A  F  R  *  A  S  H  F  W  I  I  P  V  D  T  C  I  Y  N  *  L  T  Q  W  E  L  G  K  R  A  L  L  Q  R  L  Q  S  L  L  *  L  R :   R  H  Q  P  H  L  H  I  L  I  G  Q  A  L  C  R :   L  I  I  V  L  E  L  L  L  L  F  L  P  H  L  L  L  L  L  L  P  T  H  T  C  G  E  V  S :   I  L  L  C  L  L  M  G  L  Q  F  H  I  Q  L  Y  I  L  L  P  E  F  M  L  I  L  T  L  P  R :   R  L  Q  I  L  C  R  Q  I  L  K  Q  M  G  R  G  L  K  E  R  I  G  I  Q  V  K  S  *  R  S  V  L  V  V  R  Q  A  T  M  G  K  L  L  Q  V  P  E  M  M  V  P  H  K   : V  M  K  A  E  V  K  V  H  Q  I  Q  M  M  K  M  I  T  M :   N  L  L  Q  T  R  R  E  A  L  I  K  C  L  Q  M  :  E  P  V  H  R  I  I  L  R  K  R  I  T  R  L  L  Y  M  E  I  L  S  P  C  L  Q  L  T  *  I  L  E  W  T  C  G  M  H  Q  L  P  V  L  E  R  S  K  Y  S  K  M  Q  L  V  Q  L  *  D  M  K  E  G  *  M  I  S  G  F  R :   R  N  V  N  L  K  G  K  R  E  S  N  L  I  G  S  Q  L  G  G  R  G  S  A  S  R :   Q  S  V  K  S  Y  N  V  E  *  K  L  *  A  M  R  I  I  H  S  K  M  S  S  N  G  S  L  R  N  V  R  S  L  P  R  R  I  I  *  L  R :   K  S  *  R  Y  F  V  D  Q  T  L  C  L  S  W  R  E  T  I  M  S  H  V  F  N  L  M  L  K  K  L  V  K  E  K  W  K  S  Q  D  *  V  G  D  F  C  Y  K  V  L  T  D  H  C  L  F  G  A  V  F  V  V  L  L  T  Y  T  L  L  *  L  P  F  *  V  *  L  *  H  I  F  L  M  I  L  T  P  V  L  K  E  S  *  V  C  L  T  *  S  L  N  *  L  Q  *  L  R  K  S  S  S  E  C  *  R  G  T  Q  P  H  G  L  W  Y  P  G  G  I  A  L  A  L  T  R  C  </first_frame>
            <second_frame>  C  F  L  Y  G  C  S  L  F  R  I  I  F  F  F  L  N  L  F  G  G  G  I  T  N  L  T  F  W  K  I  R  L  G  T  F  L  F  H  L  R  F  T  T  Q  :  P  F  A  E  Q  A  I  F  G  L  F  P  W  I  P  A  Y  T  I  D  *  P  N  G  S  W  G  R  E  H  S  Y  K  D  F  K  A  S  F  N  S   : G  D  T  N  R  T  F  I  S  *  L  V  K  L  Y  A   : G  L  L  *  C  W  S  Y  S  S  F  F  C  L  T  C  C  F  S  C  S  P  P  I  H  V  G  R  S   : A  S  S  Y  A  S  L  W  D  S  S  S  I  S  S  F  I  S  S  C  R  S  L  C  S  S  *  H  C  H   : A  G  S  K  F  C  A  G  K  S  *  S  R  W  E  G  A  *  R  K  G  S  E  F  K  *  K  V  K  G  L  F  W  W  *  G  R  R  Q  W  E  S  Y  F  R  F  R  K  *  W  C  H  T  K  :  *  *  K  Q  K  *  R  Y  I  R  Y  K  *  *  K  *  *  Q   : *  I  C  C  K  Q  E  G  K  L  *  S  N  A  C  R  W :   S  Q  C  T  E  *  S  C  E  R  E  S  P  D  F  Y  T  W  K  S  C  H  H  A  C  N  *  P  K  Y  W  N  G  R  V  E  C  I  S  C  R  S  W  S  D  Q  N  T  A  K  C  N  W  S  S  Y  R  T  *  R  K  D  E  *  S  V  D  S   : G  G  T  *  T  *  K  A  K  E  K  A  I  *  *  G  V  S  *  E  V  E  A  P  Q  A   : G  R  V  *  R  A  T  T  *  S  R  S  F  E  P  *  E  S  F  T  Q  R  *  A  P  T  A  L  *  G  M  *  E  A  Y  L  G  E  *  F  N  *   : G  R  V  N  A  T  L  W  T  R  R  C  V  *  A  G  E  K  R  *  C  H  T  Y  S  I  *  C  *  R  S  *  L  R  R  S  G  K  A  R  T  E  *  V  I  F  V  T  K  C  S  Q  I  I  A  F  L  V  Q  C  L  L  S  Y  *  P  I  P  S  F  N  S  L  S  E  Y  D  C  N  I  Y  F  L  *  F  *  P  Q  C  *  K  S  L  E  S  V  *  L  S  L  *  I  N  F  S  S  S  E  S  L  Q  V  N  V  N  E  A  P  N  H  M  G  C  G  T  L  V  E  L  L  *  L  *  L  D  V </second_frame>
            <third_frame>   V  F  F  M  A  A  L  C  L  G  *  F  F  S  S  *  I  S  L  G  V  G  *  Q  T  *  L  F  G  K  S  D  L  E  P  S  C  S  T  S  D  S  L  H  S :   L  S  L  S  K  P  F  L  D  Y  S  R  G  Y  L  H  I  Q  L  I  D  P  M  G  A  G  E  E  S  T  P  T  K  T  S  K  P  P  L  T  Q  :  E  T  P  T  A  P  S  Y  P  D  W  S  S  S  M  Q  :  A  Y  Y  S  A  G  A  T  P  P  F  F  A  S  P  V  A  S  P  A  P  H  P  Y  M  W  G  G  Q  :  H  P  L  M  P  P  Y  G  T  P  V  P  Y  P  A  L  Y  P  P  A  G  V  Y  A  H  P  N  I  A  T  :  P  A  P  N  S  V  P  A  N  P  E  A  D  G  K  G  P  E  G  K  D  R  N  S  S  K  K  L  K  V  C  S  G  G  K  A  G  D  N  G  K  V  T  S  G  S  G  N  D  G  A  T  Q  S :   D  E  S  R  S  E  G  T  S  D  T  N  D  E  N  D  N  N  :  E  F  A  A  N  K  K  G  S  F  D  Q  M  L  A  D   : G  A  S  A  Q  N  N  P  A  K  E  N  H  P  T  S  I  H  G  N  P  V  T  M  P  A  T  N  L  N  I  G  M  D  V  W  N  A  S  A  A  G  P  G  A  I  K  I  Q  Q  N  A  T  G  P  V  I  G  H  E  G  R  M  N  D  Q  W  I  Q  :  E  E  R  E  L  K  R  Q  K  R  K  Q  S  N  R  E  S  A  R  R  S  R  L  R  K  Q  :  A  E  C  E  E  L  Q  R  R  V  E  A  L  S  H  E  N  H  S  L  K  D  E  L  Q  R  L  S  E  E  C  E  K  L  T  S  E  N  N  L  I  K  :  E  E  L  T  L  L  C  G  P  D  V  V  S  K  L  E  R  N  D  N  V  T  R  I  Q  S  N  V  E  E  A  S  *  G  E  V  E  K  P  G  L  S  R  *  F  L  L  Q  S  A  H  R  S  L  P  F  W  C  S  V  C  C  P  T  N  L  Y  P  P  L  T  P  F  L  S  M  T  V  T  Y  I  S  Y  D  S  N  P  S  V  K  R  V  L  S  L  F  N  L  V  F  K  L  T  S  V  A  Q  K  V  F  K  *  M  L  T  R  H  P  T  T  W  V  V  V  P  W  W  N  C  F  S  F  N  *  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103217" stop="103162"/>
                    <exon start="98959" stop="98836"/>
                    <exon start="98700" stop="98653"/>
                    <exon start="98566" stop="98480"/>
                    <exon start="98364" stop="98275"/>
                    <exon start="98147" stop="97987"/>
                    <exon start="97902" stop="97848"/>
                    <exon start="97714" stop="97666"/>
                    <exon start="97583" stop="97378"/>
                    <exon start="96567" stop="96490"/>
                    <exon start="93969" stop="93844"/>
                    <exon start="93561" stop="93463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFGKSDLEPSCSTSDSLHSLSLSKPFLDYSRGYLHIQLIDPMGAGEESTPTKTSKPPLTQETPTAPSYPDWSSSMQAYYSAGATPPFFASPVASPAPHPYMWGGQHPLMPPYGTPVPYPALYPPAGVYAHPNIATPAPNSVPANPEADGKGPEGKDRNSSKKLKVCSGGKAGDNGKVTSGSGNDGATQSDESRSEGTSDTNDENDNNEFAANKKGSFDQMLADGASAQNNPAKENHPTSIHGNPVTMPATNLNIGMDVWNASAAGPGAIKIQQNATGPVIGHEGRMNDQWIQEERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALSHENHSLKDELQRLSEECEKLTSENNLIKEELTLLCGPDVVSKLERNDNVTRIQSNVEEAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0106H06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93429" stop="93226"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLQSAHRSLPFWCSVCCPTNLYPPLTPFLSMTVTYISYDSNPSVKRVLSLFNLVFKLTSVAQKVFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 247 chains have been computed
$ 
$ memory statistics:
$ 472360 bytes spliced alignments in total
$ 135 spliced alignments have been stored
$ 3498 bytes was the average size of a spliced alignment
$ 27560 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1722 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 274 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 05:27:08
-->
