<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 12:07:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572228" ref_strand="+" ref_description="SGN-U572228 Tomato 200607#2 [46 ESTs aligned] ">
      <seq>cggcaagaggagatatttttcttctaggattctatccgccgcctcgcaaataagtcggttgacaatctctctatatatagcctgtaattagatagtttctccagtcattctagccttcttttccgccggatgagtaacgtggattccttaagcaggttgctggggagcagggtcgttttgcccaaagtattgtcgatcaggtatgaacagcgtgatggctcgaatgatccgcccctggtagtaaggagtcttgattcgtcatctcagggctgagatggcgtagaaaggagtcttgatacgtcttcacaaggaatcttggctcagattgtgtagaggagagtcttgattcgtcatctcaaggaatcttggctcagatggctagggtgccagatgaatttgaattcttggcgttgttggatggatttccctgtcataatcagaagcgtcgagagcaatacccataggaagttgttgttgtatgaagatgtatagaggtataggtggggcataaaagccctaatatcaggggtgatgtcccgttttaaattaccctgttactgctctggcctttgccatgtcgggtgcgcttgcatggcaggtccctatatttaatataaattggatttttcggggttttgagggggagatagcacggatttttttttttggcccgggatctctcccctcttggtgtgtgtgtgtgttttatgccttctctgattcttgtttgcacgttatgctctgcatcgtcagatcagcagtctctcaacgagctatccttaatttgccgcccacccaaatgtaagtcaaggcagaagaagattatgaaggtgaacgttcaagattgaacatcgatttcatcagtgctaacaactccaaatctagtgcactatctgtggacaaaatctactcggattcagatatgcataataggctcgtaatcagggttgcttggattcctaataatagacctcaggtatgcttcgtggatgcttgtccttgatttgatttatgataaagcatgtgcagaacaaaaatactgaactaatttgtggtgttggagaacgtttccaactctgcacttccgaaattttgatttagaaaatttttactgtacatacactgcgatacttgaattcctagatattgacgcatcctaactggtgtcctgcaagattcaattataagaaactgagaactgaaatatataagttctctgcctgctgatgtcaattaagtctctttgcgcgagtggttgttgctcttcattacattcatagttgggccagaaggagctactgaattgcggttcttcaaatatttagttgataagcgatttgcatttaaataccaaatctcagatttgcatttaaattccaaaccttaatcgctttgcaaatatggtactgaactggcgggataatgcttattcaacttggagcggaagatgcatgcagaaatttttgtggtagtgagaaattttgataatagtgggaagaaaattttggctatggtcatctttggcattactcaactctggcgtttatttgctcaatcgacactctgcacatacacaatctgttcatgctattatgctgttacatgatgtacataccttgaagcttagaatttgggtgcacaggccctttgttacacttttccggttatatgctttgccatgttagcactgactggctttctttctttttcctgtaaatatccggttgagatatttaggtgtctttctatgatgtgaagtgatccggcattttcgagtgtgtcctgtttggacttgtaacaatttgtttatgtatctttagttttggcagaggatgtatgttttgatacatgaagcttaaaagtgcagaaatgctttgtagttttctgaggttaatgattttacttctgtttcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="2985" stop="374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2683" g_stop="1890" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="806" r_length="794" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1889" i_stop="1785" i_length="105">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1784" g_stop="674" g_length="1111"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="1917" r_length="1111" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U572228" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1905</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2683" e_stop="1890"/>
          <exon e_start="1784" e_stop="674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTCTTCTAGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTATATATAGCCTGTAATTAGATAGTTTCTCCAGTCATTCTAGCCTTCTTTTCCGCCGGATGAGTAACGTGGATTCCTTAAGCAGGTTGCTGGGGAGCAGGGTCGTTTTGCCCAAAGTATTGTCGATCAGGTATGAACAGCGTGATGGCTCGAATGATCCGCCCCTGGTAGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTGATACGTCTTCACAAGGAATCTTGGCTCAGATTGTGTAGAGGAGAGTCTTGATTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAGGTATAGGTGGGGCATAAAAGCCCTAATATCAGGGGTGATGTCCCGTTTTAAATTACCCTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTATATTTAATATAAATTGGATTTTTCGGGGTTTTGAGGGGGAGATAGCACGGATTTTTTTTTTTGGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAGGTACAGGCTAATTAGATAGCATTTGAACTTTGCAATTAATTAGACTAAAAAAACCCAGATAGCTAGTTTTTTGCAATTATCATATAGTATTGGTAGTTTGTGCAGTCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCCTAACTGGTGTCCTGCAAGATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCATAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTCAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCATGCTATTATGCTGTTACATGATGTACATACCTTGAAGCTTAGAATTTGGGTGCACAGGCCCTTTGTTACACTTTTCCGGTTATATGCTTTGCCATGTTAGCACTGACTGGCTTTCTTTCTTTTTCCTGTAAATATCCGGTTGAGATATTTAGGTGTCTTTCTATGATGTGAAGTGATCCGGCATTTTCGAGTGTGTCCTGTTTGGACTTGTAACAATTTGTTTATGTATCTTTAGTTTTGGCAGAGGATGTATGTTTTGATACATGAAGCTTAAAAGTGCAGAAATGCTTTGTAGTTTTCTGAGGTTAATGATTTTACTTCTGTTTCAGTTG</genome_strand>
        <mrna_strand>ATATTTTTCTTCTAGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTATATATAGCCTGTAATTAGATAGTTTCTCCAGTCATTCTAGCCTTCTTTTCCGCCGGATGAGTAACGTGGATTCCTTAAGCAGGTTGCTGGGGAGCAGGGTCGTTTTGCCCAAAGTATTGTCGATCAGGTATGAACAGCGTGATGGCTCGAATGATCCGCCCCTGGTAGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTGATACGTCTTCACAAGGAATCTTGGCTCAGATTGTGTAGAGGAGAGTCTTGATTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAGGTATAGGTGGGGCATAAAAGCCCTAATATCAGGGGTGATGTCCCGTTTTAAATTACCCTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTATATTTAATATAAATTGGATTTTTCGGGGTTTTGAGGGGGAGATAGCACGGATTTTTTTTTTTGGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAG.........................................................................................................TCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATCAGGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCCTAACTGGTGTCCTGCAAGATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCATAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTCAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCATGCTATTATGCTGTTACATGATGTACATACCTTGAAGCTTAGAATTTGGGTGCACAGGCCCTTTGTTACACTTTTCCGGTTATATGCTTTGCCATGTTAGCACTGACTGGCTTTCTTTCTTTTTCCTGTAAATATCCGGTTGAGATATTTAGGTGTCTTTCTATGATGTGAAGTGATCCGGCATTTTCGAGTGTGTCCTGTTTGGACTTGTAACAATTTGTTTATGTATCTTTAGTTTTGGCAGAGGATGTATGTTTTGATACATGAAGCTTAAAAGTGCAGAAATGCTTTGTAGTTTTCTGAGGTTAATGATTTTACTTCTGTTTCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572227" ref_strand="+" ref_description="SGN-U572227 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>aggattctatccgccgcctcgcaaataagtcggttgacaatctctctatatatagcctgtaattagatagtttctccagtcattctagccttcttttccgccggatgagtaacgtggattccttaagcaggttgctggggagcagggtcgttttgcccaaagtattgtcgatcaggtatgaacagcgtgatggctcgaatgatccgcccctggtagtaaggagtcttgattcgtcatctcagggctgagatggcgtagaaaggagtcttgatacgtcttcacaaggaatcttggctcagattgtgtagaggagagtcttgattcgtcatctcaaggaatcttggctcagatggctagggtgccagatgaatttgaattcttggcgttgttggatggatttccctgtcataatcagaagcgtcgagagcaatacccataggaagttgttgttgtatgaagatgtatagagatcagcagtctctcaacgagctatccttaatttgccgcccacccaaattcaaggcagaagaagattatgaaggtgaacgttcaagattgaacatcgatttcatcagtgctaacaactccaaatctagtgcactatctgtggacaaaatctactcggattcagatatgcataataggctcgtaattatggttgcttggattcctaataatagacctcaggtatgcttcgtggatgcttgtccttgatttgatttatgataaagcatgtgcagaacaaaaatactgaactaatttgtggtgttggagaacgtttccaactctgcacttccgaaattttgatttagaaaatttttactgtacatacactgcgatacttgaattcctagatattgacgcatcctaactggtgtcctgcaagattcaattataagaaactgagaactgaaatatataagttctctgcctgctgatgtcaattaagtctctttgcgcgagtggttgttgctcttcattacattcattagttgggccagaaggagctactgaattgcggttcttcaaatatttagttgataagcgatttgcatttaaataccaaatctcagatttgcatttaaattccaaaccttaatcgctttgcaaatatggtactgaactggcgggataatgcttattcaacttggagcggaagatgcatgcagaaatttttgtggtagtgagaaattttgataatagtgggaagaaaattttggctatggtcatctttggcattactcaactctggcgtttatttgctcaatcgacactctgcacatacacaatctgttcatgctattatgctgttacatgatgtacataccttgaagcttagaatttgggtgcacaggccctttgttacacttttccggttatatgctttgccatgttagcactgactggctttctttctttttcctgtaaatatccggttgagatatttaggtgtctttctatgatgtgaagtgatccggcattttcgagtgtgtcctgtttggacttgtaacaatttgtttatgtatctttagttttggcagaggatgtatgttttgatacatgaagcttaaaagtgcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="2970" stop="422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2670" g_stop="2202" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2201" i_stop="1943" i_length="259">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1942" g_stop="1895" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="517" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1894" i_stop="1785" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1784" g_stop="722" g_length="1063"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="1581" r_length="1064" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U572227" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1580</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2670" e_stop="2202"/>
          <exon e_start="1942" e_stop="1895"/>
          <exon e_start="1784" e_stop="722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTATATATAGCCTGTAATTAGATAGTTTCTCCAGTCATTCTAGCCTTCTTTTCCGCCGGATGAGTAACGTGGATTCCTTAAGCAGGTTGCTGGGGAGCAGGGTCGTTTTGCCCAAAGTATTGTCGATCAGGTATGAACAGCGTGATGGCTCGAATGATCCGCCCCTGGTAGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTGATACGTCTTCACAAGGAATCTTGGCTCAGATTGTGTAGAGGAGAGTCTTGATTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAGGTATAGGTGGGGCATAAAAGCCCTAATATCAGGGGTGATGTCCCGTTTTAAATTACCCTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTATATTTAATATAAATTGGATTTTTCGGGGTTTTGAGGGGGAGATAGCACGGATTTTTTTTTTTGGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAGGTACAGGCTAATTAGATAGCATTTGAACTTTGCAATTAATTAGACTAAAAAAACCCAGATAGCTAGTTTTTTGCAATTATCATATAGTATTGGTAGTTTGTGCAGTCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCCTAACTGGTGTCCTGCAAGATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCA-TAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTCAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCATGCTATTATGCTGTTACATGATGTACATACCTTGAAGCTTAGAATTTGGGTGCACAGGCCCTTTGTTACACTTTTCCGGTTATATGCTTTGCCATGTTAGCACTGACTGGCTTTCTTTCTTTTTCCTGTAAATATCCGGTTGAGATATTTAGGTGTCTTTCTATGATGTGAAGTGATCCGGCATTTTCGAGTGTGTCCTGTTTGGACTTGTAACAATTTGTTTATGTATCTTTAGTTTTGGCAGAGGATGTATGTTTTGATACATGAAGCTTAAAAGTGCAGAA</genome_strand>
        <mrna_strand>AGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTATATATAGCCTGTAATTAGATAGTTTCTCCAGTCATTCTAGCCTTCTTTTCCGCCGGATGAGTAACGTGGATTCCTTAAGCAGGTTGCTGGGGAGCAGGGTCGTTTTGCCCAAAGTATTGTCGATCAGGTATGAACAGCGTGATGGCTCGAATGATCCGCCCCTGGTAGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTGATACGTCTTCACAAGGAATCTTGGCTCAGATTGTGTAGAGGAGAGTCTTGATTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAG...................................................................................................................................................................................................................................................................ATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAAT..............................................................................................................TCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCCTAACTGGTGTCCTGCAAGATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCATTAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTCAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCATGCTATTATGCTGTTACATGATGTACATACCTTGAAGCTTAGAATTTGGGTGCACAGGCCCTTTGTTACACTTTTCCGGTTATATGCTTTGCCATGTTAGCACTGACTGGCTTTCTTTCTTTTTCCTGTAAATATCCGGTTGAGATATTTAGGTGTCTTTCTATGATGTGAAGTGATCCGGCATTTTCGAGTGTGTCCTGTTTGGACTTGTAACAATTTGTTTATGTATCTTTAGTTTTGGCAGAGGATGTATGTTTTGATACATGAAGCTTAAAAGTGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572229" ref_strand="+" ref_description="SGN-U572229 Tomato 200607#2 [7 ESTs aligned] ">
      <seq>gctaggattctatccgccgcctcgcaaataagtcggttgacaatctctctctatatatccttgtaattagatagtttctccagccattctagccttcttttcctccgggtaagtaacgtggattccttaagcagggttgttttgcccaaagtattgtcgatcaggtatgtacagcgtgatggctcggatgatccccccctggttgtaaggagtcttgattcgtcatctcagggctgagatggcgtagaaaggagtctttatacgtcttctcagggaatcttggctcagatggtgtagaggagagtcttgactcgtcatctcaaggaatcttggctcagatggctagggtgccagatgaatttgaattcttggcgttgttggatggatttccctgtcataatcagaagcgtcgagagcaatacccataggaagttgttgttgtatgaagatgtatagaggtatagttggggcataaaagccctaatatcaggggtgatgtcccgttttaaattactctgttactgctctggcctttgccatgtcgggtgcgcttgcatggcaggtccctatatttaatataaattggatttttcggggttttgagggggagatagcacggattttttttttggcccgggatctctcccctcttggtgtgtgtgtgtgttttatgccttctctgattcttgtttgcacgttatgctctgcatcgtcagatcagcagtctctcaacgagctatccttaatttgccgcccacccaaatgtaagtcaaggcagaagaagattatgaaggtgaacgttcaagattgaacatcgatttcatcagtgctaacaactccaaatctagtgcactatctgtggacaaaatctactcggattcagatatgcataataggctcgtaattatggttgcttggattcctaataatagacctcagattcaattataagaaactgagaactgaaatatataagttctctgcctgctgatgtcaattaagtctctttgcgcgagtggttgttgctcttcattacattcatagttgggccagaaggagctactgaattgcggttcttcaaatatttagttgataagcgatttgcatttaaataccaaatctcagatttgcatttaaattccaaaccttaatcgctttgcaaatatggtactgaactggcgggataatgcttattcaacttggagcggaagatgcatgcagaaatttttgtggtagtgagaaattttgataatagtgggaagaaaattttggctatggtcatctttggcattacttaactctggcgtttatttgctcaatcgacactctgcacatacacaatctgttcttgctattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="2972" stop="696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2673" g_stop="1890" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1889" i_stop="1785" i_length="105">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1784" g_stop="1615" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="939" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1614" i_stop="1416" i_length="199">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1415" g_stop="996" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1359" r_length="420" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U572229" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>1374</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2673" e_stop="1890"/>
          <exon e_start="1784" e_stop="1615"/>
          <exon e_start="1415" e_stop="996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTATATATAGCC-TGTAATTAGATAGTTTCTCCAGTCATTCTAGCCTTCTTTTCCGCCGGATGAGTAACGTGGATTCCTTAAGCAGGTTGCTGGGGAGCAGGGTCGTTTTGCCCAAAGTATTGTCGATCAGGTATGAACAGCGTGATGGCTCGAATGATCCGCCCCTGGTAGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTGATACGTCTTCACAAGGAATCTTGGCTCAGATTGTGTAGAGGAGAGTCTTGATTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAGGTATAGGTGGGGCATAAAAGCCCTAATATCAGGGGTGATGTCCCGTTTTAAATTACCCTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTATATTTAATATAAATTGGATTTTTCGGGGTTTTGAGGGGGAGATAGCACGGATTTTTTTTTTTGGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAGGTACAGGCTAATTAGATAGCATTTGAACTTTGCAATTAATTAGACTAAAAAAACCCAGATAGCTAGTTTTTTGCAATTATCATATAGTATTGGTAGTTTGTGCAGTCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCCTAACTGGTGTCCTGCAAGATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCATAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTCAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCATGCTATTATG</genome_strand>
        <mrna_strand>GCTAGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTCTATATATCCTTGTAATTAGATAGTTTCTCCAGCCATTCTAGCCTTCTTTTCCTCCGGGTAAGTAACGTGGATTCCTTAAGCAGG--G-T-----------T-GTTTTGCCCAAAGTATTGTCGATCAGGTATGTACAGCGTGATGGCTCGGATGATCCCCCCCTGGTTGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTTATACGTCTTCTCAGGGAATCTTGGCTCAGATGGTGTAGAGGAGAGTCTTGACTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAGGTATAGTTGGGGCATAAAAGCCCTAATATCAGGGGTGATGTCCCGTTTTAAATTACTCTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTATATTTAATATAAATTGGATTTTTCGGGGTTTTGAGGGGGAGATAGCACGGA-TTTTTTTTTTGGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAG.........................................................................................................TCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAG.......................................................................................................................................................................................................ATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCATAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTTAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCTTGCTATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572226" ref_strand="+" ref_description="SGN-U572226 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>ggcccgggatctctcccctcttggtgtgtgtgtgtgttttatgccttctctgattcttgtttgcacgttatgctctgcatcgtcagatcagcagtctctcaacgagctatccttaatttgccgcccacccaaatgtaaggtacaggctaattagatagcatttgaactttgcaattaattagactaaaaaaacccagatagctagttttttgcaattatcatatagtattggtagtttgtgcagtcaaggcagaagaagattatgaaggtgaacgttcaagattgaacatcgatttcatcagtgctaacaactccaaatctagtgcactatctgtggacaaaatctactcggattcagatatgcataataggctcgtaattatggttgcttggattcctaataatagacctcaggtatgcttcgtggatgcttgtccttgatttgatttatgataaagcatgtgcagaacaaaaatactgaactaatttgtggtgttgggagaacgtttccaactctgcacttccgaaattttgatttagaaaatttttactgtacatacactgcgatacttgaattcctagatattgacgcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="2328" stop="1134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2028" g_stop="1434" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U572226" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2028" e_stop="1434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAGGTACAGGCTAATTAGATAGCATTTGAACTTTGCAATTAATTAGACTAAAAAAACCCAGATAGCTAGTTTTTTGCAATTATCATATAGTATTGGTAGTTTGTGCAGTCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTT-GGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCC</genome_strand>
        <mrna_strand>GGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAGGTACAGGCTAATTAGATAGCATTTGAACTTTGCAATTAATTAGACTAAAAAAACCCAGATAGCTAGTTTTTTGCAATTATCATATAGTATTGGTAGTTTGTGCAGTCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596959" ref_strand="+" ref_description="SGN-U596959 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aggagcagggtttgcccaaagtaatgttgatcagatatacacagcatggtggttgggatgagccgcccctggtagaaaggagtcttgattcgtcgtctcagcgaagcttggatctgatggcgtagaaaggagtcttgattcgtcatctcagggaatcttggctcagatggccagggtgtagataaacttgaattcttggcgttgttggatggatttccctgtcgcgtggagagcaatatccatttgagtatgttgttgtatgaagatatataggtgtataatcgggatatagaaggcctactatcagggggtcatgtcctgtttatattactttgttactgctctggcctttgccatgtcgggtgcgcttgcatggcaggtccctaactttaatataaaatggatttttttggggtttcgaggggggagatggcacgggtttttttttctttttggcccgggttctctcccctcttgatgtgtgtgtgtttgtgccttttctgattcttgtttgcacgttatgctctcatcgtcagatcagcaacgaactatccttaattggccgcccaccgcccaccgcccaaatcaggtataggctaattagtttgaatttgaacttgggcaattaattagacaaaaaacgtagataactacaggttttttatatgatagccaacggaagccacttaatttgtattatcatatatattgttggtaggttctgctgttaacgccgtagaagatgatgaatatgacctttaagttttgagttttgaacatctccaaatctaacaaaaccaagcatctgtttctgaaaaatgtgcttgggcaaaatcctggaggactttagatgcgctatttggattcgggtgcatatcaagctcgtaaatatggtttgctcggattcctaataattgacgaccttagccaatatgacatgttggatcagataatcaatagtaagatctttggaactatcaaatcctaacttgtggagtctctaattggaagatgagggataagggaatgagcagacacttcgaattaggcctgccatgtaatgtaggtgccgagattcaactgatatttttgtaccaacatccaaggaaccttatggaactgcttacaggaaccttatggaattgcttgctgagatgatgacttgtgaagaggatatcggctctgtataatgcagtattttgtactttccacctcttctgcaaagatggatgggataacggtcaatctggcaaagtaagaatagattattgatctaattagtcaaggattagtggccatatttcagcggtattaccaccagctgtaaatgtcatccaacgacgactactagattgttgaagattgtagagatccattcagggagtggatgaggcgtttattctggaccttgttgtgttcagaaattttgaaatactagaggtgatcagtactagcttaagggtagtcaaaggagtacagataaccgtatatcatttctattaaggcgttacatgccaattgtaaatttaaaatctttatatgtgaacgtgaagctttgtgtattttccgtggagtataggcttgaacaaacttgtttgttcctctagtgtccgtgtattaaaacttgatttgtagtgcttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="7853" stop="4133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7553" g_stop="6627" g_length="927"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="927" r_length="927" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6626" i_stop="5263" i_length="1364">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5262" g_stop="5174" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="928" r_stop="1016" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5173" i_stop="5061" i_length="113">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5060" g_stop="4433" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1644" r_length="628" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U596959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7553" e_stop="6627"/>
          <exon e_start="5262" e_stop="5174"/>
          <exon e_start="5060" e_stop="4433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCAGGGTTTGCCCAAAGTAATGTTGATCAGATATACACAGCATGGTGGTTGGGATGAGCCGCCCCTGGTAGAAAGGAGTCTTGATTCGTCGTCTCAGCGAAGCTTGGATCTGATGGCGTAGAAAGGAGTCTTGATTCGTCATCTCAGGGAATCTTGGCTCAGATGGCCAGGGTGTAGATAAACTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCGCGTGGAGAGCAATATCCATTTGAGTATGTTGTTGTATGAAGATATATAGGTGTATAATCGGGATATAGAAGGCCTACTATCAGGGGGTCATGTCCTGTTTATATTACTTTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTAACTTTAATATAAAATGGATTTTTTTGGGGTTTCGAGGGGGGAGATGGCACGGGTTTTTTTTTCTTTTTGGCCCGGGTTCTCTCCCCTCTTGATGTGTGTGTGTTTGTGCCTTTTCTGATTCTTGTTTGCACGTTATGCTCTCATCGTCAGATCAGCAACGAACTATCCTTAATTGGCCGCCCACCGCCCACCGCCCAAATCAGGTATAGGCTAATTAGTTTGAATTTGAACTTGGGCAATTAATTAGACAAAAAACGTAGATAACTACAGGTTTTTTATATGATAGCCAACGGAAGCCACTTAATTTGTATTATCATATATATTGTTGGTAGGTTCTGCTGTTAACGCCGTAGAAGATGATGAATATGACCTTTAAGTTTTGAGTTTTGAACATCTCCAAATCTAACAAAACCAAGCATCTGTTTCTGAAAAATGTGCTTGGGCAAAATCCTGGAGGACTTTAGATGCGCTATTTGGATTCGGGTGCATATCAAGCTCGTAAATATGGTTTGCTCGGATTCCTAATAATTGACGACCTTAGGTACGCATTGTAGGCTTCGCTCGTCTTTTCAGTTGATTTATAATTAAGCATGTGCAGAACAGAAATACTGAAACAATTTTGTGGAATGTTTTTAATTCTATGCTCTCAGAATTTTGATTCAAAAATTATGTACTGCGATCAATAAATTTCGACTTGAGTTCCAGATATCGGCCTCGACTTATCCTAACTGGGGTCATGCAGTAAGATTGGATTATTAAAAACATAGAACTGTTTTAAGTTTGTGTCTGCTAATGTCAATTAAGTCTTTGTATGAGTGGGCTGTTACTCTTCATTTCATTAGAAGTTGGACTAGAAGAATCTGCAGTGAAGATTTGCATTTAGATATCGATCGCTTTGCAAATACGGTACTGAAGTGGCGGGATGCTGCTTTTCAACTTCGAACATGTAACTGTTGCGGAACTCATGTAGAAATTTGGCAGTAGTGTGATATTTTGGGGGGGGGGGGGGATTTTAATGATGTAAAGAATTATGTTAACTACGGTAATCTTTAGGCATACTCAATTCTGGCGTTCATTGTGGTGGATGTAATCGGCGGAGGAGAACTCACCCAAAGATCGTGGGATTATGCAATTGAGAAATCGAGCTAGGTTGCGGTTGAGATACTCTGTTCTATTGTTGGCTGCAGACGTACATCAGATATGTATCACGCCCTGGGCTGTGGTTTGGTATAGACACTCTTTTCTGTAGGCCTGTTTTATGATATAGGCAAATCCAGTCAAGTTTTATTTATTGTTCGGTCGTGGTGAAAGGTTTGAAAAAACCGATGTTATGCAGACTTGATAGGGAGAACTACTGGTATGAAAGGGTAATGTCAGGTTTTAGCTTTGCTCAATATGTGCTCGAAACACTTTACGCATGCATAGTTTGTTCATGCTATTGAATTTTTAAAATGTACATGTCTTGAAGCTTAGAATTTGGGTGCAAAGACCCTTCGTATACTAATCTGTTACATGCTTCGGTATGTTACCATTTTGATCGGCTGTTTCCTCTTTTTTGTTGGTTAAATTTGTAACTATCCAGTTGTGAGACATCTAGGTGACCAAGTAAGTGTGTTCTGTACGCAATTTTTAGCTTTTTATTTATGTAATTTTAGTTTTCGCGGAGTATTTGATTCTGGAACTTGGAATCTTTTGAATGTAGAAGTCCTTTTGTGGTCTTCTGATGTAAATGCGTTTGCTTTTGTTAAAGTTGATGTAATTCTATACTTCCAGTTTGATCAAGTTTGTGAATATTCTGTATATATTTTTCAGCCAATTGAGGTATATGCTTTTGCTTCTGTTACGGTTGATGTAATTTTTTACCAGCTTGATCAAGTTTGTGAATCTTCTGTATATACTTTTCAGCCAATATGACATGTTGGATCAGATAATCAATAGTAAGATCTTTGGAACTATCAAATCCTAACTTGTGGAGTCTCTAATTGGAAGATGAGGTGAGAATATTTATCAGAAATTTCAAAGTGACTTCTTGAGATGGTCTGTGTATACCTATTTCTATATAGTATTAGTATTTATGTGGTAAATAATGACAATCAGTTACATGAAGGGATAAGGGAATGAGCAGACACTTCGAATTAGGCCTGCCATGTAATGTAGGTGCCGAGATTCAACTGATATTTTTGTACCAACATCCAAGGAACCTTATGGAACTGCTTACAGGAACCTTATGGAATTGCTTGCTGAGATGATGACTTGTGAAGAGGATATCGGCTCTGTATAATGCAGTATTTTGTACTTTCCACCTCTTCTGCAAAGATGGATGGGATAACGGTCAATCTGGCAAAGTAAGAATAGATTATTGATCTAATTAGTCAAGGATTAGTGGCCATATTTCAGCGGTATTACCACCAGCTGTAAATGTCATCCAACGACGACTACTAGATTGTTGAAGATTGTAGAGATCCATTCAGGGAGTGGATGAGGCGTTTATTCTGGACCTTGTTGTGTTCAGAAATTTTGAAATACTAGAGGTGATCAGTACTAGCTTAAGGGTAGTCAAAGGAGTACAGATAACCGTATATCATTTCTATTAAGGCGTTACATGCCAATTGTAAATTTAAAATCTTTATATGTGAACGTGAAGCTTTGTGTATTTTCCGTGGAGTATAGGCTTGAACAAACTTGTTTGTTCCTCTAGTGTCCGTGTATTAAAACTTGATTTGTAGTGCTTGGCA</genome_strand>
        <mrna_strand>AGGAGCAGGGTTTGCCCAAAGTAATGTTGATCAGATATACACAGCATGGTGGTTGGGATGAGCCGCCCCTGGTAGAAAGGAGTCTTGATTCGTCGTCTCAGCGAAGCTTGGATCTGATGGCGTAGAAAGGAGTCTTGATTCGTCATCTCAGGGAATCTTGGCTCAGATGGCCAGGGTGTAGATAAACTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCGCGTGGAGAGCAATATCCATTTGAGTATGTTGTTGTATGAAGATATATAGGTGTATAATCGGGATATAGAAGGCCTACTATCAGGGGGTCATGTCCTGTTTATATTACTTTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTAACTTTAATATAAAATGGATTTTTTTGGGGTTTCGAGGGGGGAGATGGCACGGGTTTTTTTTTCTTTTTGGCCCGGGTTCTCTCCCCTCTTGATGTGTGTGTGTTTGTGCCTTTTCTGATTCTTGTTTGCACGTTATGCTCTCATCGTCAGATCAGCAACGAACTATCCTTAATTGGCCGCCCACCGCCCACCGCCCAAATCAGGTATAGGCTAATTAGTTTGAATTTGAACTTGGGCAATTAATTAGACAAAAAACGTAGATAACTACAGGTTTTTTATATGATAGCCAACGGAAGCCACTTAATTTGTATTATCATATATATTGTTGGTAGGTTCTGCTGTTAACGCCGTAGAAGATGATGAATATGACCTTTAAGTTTTGAGTTTTGAACATCTCCAAATCTAACAAAACCAAGCATCTGTTTCTGAAAAATGTGCTTGGGCAAAATCCTGGAGGACTTTAGATGCGCTATTTGGATTCGGGTGCATATCAAGCTCGTAAATATGGTTTGCTCGGATTCCTAATAATTGACGACCTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATATGACATGTTGGATCAGATAATCAATAGTAAGATCTTTGGAACTATCAAATCCTAACTTGTGGAGTCTCTAATTGGAAGATGAG.................................................................................................................GGATAAGGGAATGAGCAGACACTTCGAATTAGGCCTGCCATGTAATGTAGGTGCCGAGATTCAACTGATATTTTTGTACCAACATCCAAGGAACCTTATGGAACTGCTTACAGGAACCTTATGGAATTGCTTGCTGAGATGATGACTTGTGAAGAGGATATCGGCTCTGTATAATGCAGTATTTTGTACTTTCCACCTCTTCTGCAAAGATGGATGGGATAACGGTCAATCTGGCAAAGTAAGAATAGATTATTGATCTAATTAGTCAAGGATTAGTGGCCATATTTCAGCGGTATTACCACCAGCTGTAAATGTCATCCAACGACGACTACTAGATTGTTGAAGATTGTAGAGATCCATTCAGGGAGTGGATGAGGCGTTTATTCTGGACCTTGTTGTGTTCAGAAATTTTGAAATACTAGAGGTGATCAGTACTAGCTTAAGGGTAGTCAAAGGAGTACAGATAACCGTATATCATTTCTATTAAGGCGTTACATGCCAATTGTAAATTTAAAATCTTTATATGTGAACGTGAAGCTTTGTGTATTTTCCGTGGAGTATAGGCTTGAACAAACTTGTTTGTTCCTCTAGTGTCCGTGTATTAAAACTTGATTTGTAGTGCTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596958" ref_strand="+" ref_description="SGN-U596958 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctccctgaatggatctctacaatcttcaacaatctagtagtcgtcgttggatgacatttacagctggtggtaataccgctgaaatatggccactaatccttgactaattagatcaataatctattcttactttgccagattgaccgttatcccatccatctttgcagaagaggtggaaagtacaaaatactgcattatacagagccgatatcctcttcacaagtcatcatctcagcaagcaattccataaggttcctgtaagcagttccataaggttccttggatgttggtacaaaaatatcagttgaatctcggcacctacattacatggcaggcctaattcgaagtgtctgctcattcccttatcccttcatgtaactgattgtcattatttaccacataaatactaatactatatagaaataggtatacacagaccatctcaagaagtcactttgaaatttctgataaatattctcacctcatcttccaattagagactccacaagttaggatttgatagttccaaagatcttactattgattatctgatccaacatgtcatattggctgaaaagtatatacagaagattcacaaacttgatcaagctggtaaaaaattacatcaaccgtaacagaagcaaaagcatatacctcanntggctgaaaaatatatacagaatattcacaaacttgatcaaactggaagtatagaattacntcaactttaacaaaagcaaacgcatttacntcanaanancacaaaannacttctacnttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="4393" stop="5777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4693" g_stop="5477" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U596958" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4693" e_stop="5477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTGAATGGATCTCTACAATCTTCAACAATCTAGTAGTCGTCGTTGGATGACATTTACAGCTGGTGGTAATACCGCTGAAATATGGCCACTAATCCTTGACTAATTAGATCAATAATCTATTCTTACTTTGCCAGATTGACCGTTATCCCATCCATCTTTGCAGAAGAGGTGGAAAGTACAAAATACTGCATTATACAGAGCCGATATCCTCTTCACAAGTCATCATCTCAGCAAGCAATTCCATAAGGTTCCTGTAAGCAGTTCCATAAGGTTCCTTGGATGTTGGTACAAAAATATCAGTTGAATCTCGGCACCTACATTACATGGCAGGCCTAATTCGAAGTGTCTGCTCATTCCCTTATCCCTTCATGTAACTGATTGTCATTATTTACCACATAAATACTAATACTATATAGAAATAGGTATACACAGACCATCTCAAGAAGTCACTTTGAAATTTCTGATAAATATTCTCACCTCATCTTCCAATTAGAGACTCCACAAGTTAGGATTTGATAGTTCCAAAGATCTTACTATTGATTATCTGATCCAACATGTCATATTGGCTGAAAAGTATATACAGAAGATTCACAAACTTGATCAAGCTGGTAAAAAATTACATCAACCGTAACAGAAGCAAAAGCATATACCTCAATTGGCTGAAAAATATATACAGAATATTCACAAACTTGATCAAACTGGAAGTATAGAATTACATCAACTTTAACAAAAGCAAACGCATTTACATCAGAAGACCACAAAAGGACTTCTACATTCAAAA</genome_strand>
        <mrna_strand>CTCCCTGAATGGATCTCTACAATCTTCAACAATCTAGTAGTCGTCGTTGGATGACATTTACAGCTGGTGGTAATACCGCTGAAATATGGCCACTAATCCTTGACTAATTAGATCAATAATCTATTCTTACTTTGCCAGATTGACCGTTATCCCATCCATCTTTGCAGAAGAGGTGGAAAGTACAAAATACTGCATTATACAGAGCCGATATCCTCTTCACAAGTCATCATCTCAGCAAGCAATTCCATAAGGTTCCTGTAAGCAGTTCCATAAGGTTCCTTGGATGTTGGTACAAAAATATCAGTTGAATCTCGGCACCTACATTACATGGCAGGCCTAATTCGAAGTGTCTGCTCATTCCCTTATCCCTTCATGTAACTGATTGTCATTATTTACCACATAAATACTAATACTATATAGAAATAGGTATACACAGACCATCTCAAGAAGTCACTTTGAAATTTCTGATAAATATTCTCACCTCATCTTCCAATTAGAGACTCCACAAGTTAGGATTTGATAGTTCCAAAGATCTTACTATTGATTATCTGATCCAACATGTCATATTGGCTGAAAAGTATATACAGAAGATTCACAAACTTGATCAAGCTGGTAAAAAATTACATCAACCGTAACAGAAGCAAAAGCATATACCTCANNTGGCTGAAAAATATATACAGAATATTCACAAACTTGATCAAACTGGAAGTATAGAATTACNTCAACTTTAACAAAAGCAAACGCATTTACNTCANAANANCACAAAANNACTTCTACNTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563950" ref_strand="+" ref_description="SGN-U563950 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>caattctggcgttcattgtggtggatgtaatcggcggaggagaactcacccaaagatcgtgggattatgcaattgagaaatcgagctaggttgcggttgagatactctgttctattgttggctgcagacgtacatcagatatgtatcacgccctgggctgtggtttggtatagacactcttttctgtaggcctgttttatgatataggcaaatccagtcaagttttatttattgttcggtcgtggtgaaaggtttgaaaaaaccgatgttatgcagacttgatagggagaactactggtatgaaagggtaatgtcaggttttagctttgctcaatatgtgctcgaaacactttacgcatgcatagtttgttcatgctattgaatttttaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="6407" stop="5413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6107" g_stop="5713" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U563950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6107" e_stop="5713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTGGCGTTCATTGTGGTGGATGTAATCGGCGGAGGAGAACTCACCCAAAGATCGTGGGATTATGCAATTGAGAAATCGAGCTAGGTTGCGGTTGAGATACTCTGTTCTATTGTTGGCTGCAGACGTACATCAGATATGTATCACGCCCTGGGCTGTGGTTTGGTATAGACACTCTTTTCTGTAGGCCTGTTTTATGATATAGGCAAATCCAGTCAAGTTTTATTTATTGTTCGGTCGTGGTGAAAGGTTTGAAAAAACCGATGTTATGCAGACTTGATAGGGAGAACTACTGGTATGAAAGGGTAATGTCAGGTTTTAGCTTTGCTCAATATGTGCTCGAAACACTTTACGCATGCATAGTTTGTTCATGCTATTGAATTTTTAAAATGT</genome_strand>
        <mrna_strand>CAATTCTGGCGTTCATTGTGGTGGATGTAATCGGCGGAGGAGAACTCACCCAAAGATCGTGGGATTATGCAATTGAGAAATCGAGCTAGGTTGCGGTTGAGATACTCTGTTCTATTGTTGGCTGCAGACGTACATCAGATATGTATCACGCCCTGGGCTGTGGTTTGGTATAGACACTCTTTTCTGTAGGCCTGTTTTATGATATAGGCAAATCCAGTCAAGTTTTATTTATTGTTCGGTCGTGGTGAAAGGTTTGAAAAAACCGATGTTATGCAGACTTGATAGGGAGAACTACTGGTATGAAAGGGTAATGTCAGGTTTTAGCTTTGCTCAATATGTGCTCGAAACACTTTACGCATGCATAGTTTGTTCATGCTATTGAATTTTTAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596960" ref_strand="+" ref_description="SGN-U596960 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctatccgccgcctcgaaaataattcggttgacaatctctctgtatatagcctttaatgagatggtttttcctccaggtaagtatcgtgttgctgaggagcagggtttgcccaaagtaatgttgatcagatatacacagcatggtggttgggatgagccgcccctggtagaaaggagtcttgattcgtcgtctcagcgaagcttggatctgatggcgtagaaaggagtcttgattcgtcatctcagggaatcttggctcagatggccagggtgtagataaacttgaattcttggcgttgttggatggatttccctgtcgcgtggagagcaatatccatttgaatcagcaacgaactatccttaattggccgcccaccgcccaccgcccaaatcaggttctgctgttaacgccgtagaagatgatgaatatgacctttaagttttgagttttgaacatctccaaatctaacaaaaccaagcatctgtttctgaaaaatgtgcttgggcaaaatcctggaggactttagatgcgctatttggattcgggtgcatatcaagctcgtaaatatggtttgctcggattcctaataattgacgaccttaggtacgcattgtaggcttcgctcgtcttttcagttgatttataattaagcatgtgcagaacagaaatactgaaacaattttgtggaatgtttttaattctatgctctcagaattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="7947" stop="6209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7647" g_stop="7307" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7306" i_stop="7018" i_length="289">
            <donor d_prob="0.006" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7017" g_stop="6965" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="394" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6964" i_stop="6836" i_length="129">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6509" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="721" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U596960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7647" e_stop="7307"/>
          <exon e_start="7017" e_stop="6965"/>
          <exon e_start="6835" e_stop="6509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCCGCCGCCTCGAAAATAATTCGGTTGACAATCTCTCTGTATATAGCCTTTAATGAGATGGTTTTTCCTCCAGGTAAGTATCGTGTTGCTGAGGAGCAGGGTTTGCCCAAAGTAATGTTGATCAGATATACACAGCATGGTGGTTGGGATGAGCCGCCCCTGGTAGAAAGGAGTCTTGATTCGTCGTCTCAGCGAAGCTTGGATCTGATGGCGTAGAAAGGAGTCTTGATTCGTCATCTCAGGGAATCTTGGCTCAGATGGCCAGGGTGTAGATAAACTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCGCGTGGAGAGCAATATCCATTTGAGTATGTTGTTGTATGAAGATATATAGGTGTATAATCGGGATATAGAAGGCCTACTATCAGGGGGTCATGTCCTGTTTATATTACTTTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTAACTTTAATATAAAATGGATTTTTTTGGGGTTTCGAGGGGGGAGATGGCACGGGTTTTTTTTTCTTTTTGGCCCGGGTTCTCTCCCCTCTTGATGTGTGTGTGTTTGTGCCTTTTCTGATTCTTGTTTGCACGTTATGCTCTCATCGTCAGATCAGCAACGAACTATCCTTAATTGGCCGCCCACCGCCCACCGCCCAAATCAGGTATAGGCTAATTAGTTTGAATTTGAACTTGGGCAATTAATTAGACAAAAAACGTAGATAACTACAGGTTTTTTATATGATAGCCAACGGAAGCCACTTAATTTGTATTATCATATATATTGTTGGTAGGTTCTGCTGTTAACGCCGTAGAAGATGATGAATATGACCTTTAAGTTTTGAGTTTTGAACATCTCCAAATCTAACAAAACCAAGCATCTGTTTCTGAAAAATGTGCTTGGGCAAAATCCTGGAGGACTTTAGATGCGCTATTTGGATTCGGGTGCATATCAAGCTCGTAAATATGGTTTGCTCGGATTCCTAATAATTGACGACCTTAGGTACGCATTGTAGGCTTCGCTCGTCTTTTCAGTTGATTTATAATTAAGCATGTGCAGAACAGAAATACTGAAACAATTTTGTGGAATGTTTTTAATTCTATGCTCTCAGAATTTTGAT</genome_strand>
        <mrna_strand>CTATCCGCCGCCTCGAAAATAATTCGGTTGACAATCTCTCTGTATATAGCCTTTAATGAGATGGTTTTTCCTCCAGGTAAGTATCGTGTTGCTGAGGAGCAGGGTTTGCCCAAAGTAATGTTGATCAGATATACACAGCATGGTGGTTGGGATGAGCCGCCCCTGGTAGAAAGGAGTCTTGATTCGTCGTCTCAGCGAAGCTTGGATCTGATGGCGTAGAAAGGAGTCTTGATTCGTCATCTCAGGGAATCTTGGCTCAGATGGCCAGGGTGTAGATAAACTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCGCGTGGAGAGCAATATCCATTTGA.................................................................................................................................................................................................................................................................................................ATCAGCAACGAACTATCCTTAATTGGCCGCCCACCGCCCACCGCCCAAATCAG.................................................................................................................................GTTCTGCTGTTAACGCCGTAGAAGATGATGAATATGACCTTTAAGTTTTGAGTTTTGAACATCTCCAAATCTAACAAAACCAAGCATCTGTTTCTGAAAAATGTGCTTGGGCAAAATCCTGGAGGACTTTAGATGCGCTATTTGGATTCGGGTGCATATCAAGCTCGTAAATATGGTTTGCTCGGATTCCTAATAATTGACGACCTTAGGTACGCATTGTAGGCTTCGCTCGTCTTTTCAGTTGATTTATAATTAAGCATGTGCAGAACAGAAATACTGAAACAATTTTGTGGAATGTTTTTAATTCTATGCTCTCAGAATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596961" ref_strand="+" ref_description="SGN-U596961 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aggagcagggtttgcccaaagtaatgttgatcagatatacacagcatggtggttgggatgagccgcccctggtagaaaggagtcttgattcgtcgtctcagcgaagcttggatctgatggcgtagaaaggagtcttgattcgtcatctcagggaatcttggctcagatggccagggtgtagataaacttgaattcttggcgttgttggatggatttccctgtcgcgtggagagcaatatccatttgagtatgttgttgtatgaagatatataggtgtataatcgggatatagaaggcctactatcagggggtcatgtcctgtttatattactttgttactgctctggcctttgccatgtcgggtgcgcttgcatggcaggtccctaactttaatataaaatggatttttttggggtttcgaggggggagatggcacgggtttttttttctttttggcccgggttctctcccctcttgatgtgtgtgtgtttgtgccttttctgattcttgtttgcacgttatgctctcatcgtcagatcagcaacgaactatccttaattggccgcccaccgcccaccgcccaaatcaggtataggctaattagtttgaatttgaacttgggcaattaattanacaaaaaacgtanannnctacnngttttttatatgatagccnacggaagccacttaatttgtattatcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="7853" stop="6548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7553" g_stop="6848" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U596961" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7553" e_stop="6848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCAGGGTTTGCCCAAAGTAATGTTGATCAGATATACACAGCATGGTGGTTGGGATGAGCCGCCCCTGGTAGAAAGGAGTCTTGATTCGTCGTCTCAGCGAAGCTTGGATCTGATGGCGTAGAAAGGAGTCTTGATTCGTCATCTCAGGGAATCTTGGCTCAGATGGCCAGGGTGTAGATAAACTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCGCGTGGAGAGCAATATCCATTTGAGTATGTTGTTGTATGAAGATATATAGGTGTATAATCGGGATATAGAAGGCCTACTATCAGGGGGTCATGTCCTGTTTATATTACTTTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTAACTTTAATATAAAATGGATTTTTTTGGGGTTTCGAGGGGGGAGATGGCACGGGTTTTTTTTTCTTTTTGGCCCGGGTTCTCTCCCCTCTTGATGTGTGTGTGTTTGTGCCTTTTCTGATTCTTGTTTGCACGTTATGCTCTCATCGTCAGATCAGCAACGAACTATCCTTAATTGGCCGCCCACCGCCCACCGCCCAAATCAGGTATAGGCTAATTAGTTTGAATTTGAACTTGGGCAATTAATTAGACAAAAAACGTAGATAACTACAGGTTTTTTATATGATAGCCAACGGAAGCCACTTAATTTGTATTATCATATA</genome_strand>
        <mrna_strand>AGGAGCAGGGTTTGCCCAAAGTAATGTTGATCAGATATACACAGCATGGTGGTTGGGATGAGCCGCCCCTGGTAGAAAGGAGTCTTGATTCGTCGTCTCAGCGAAGCTTGGATCTGATGGCGTAGAAAGGAGTCTTGATTCGTCATCTCAGGGAATCTTGGCTCAGATGGCCAGGGTGTAGATAAACTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCGCGTGGAGAGCAATATCCATTTGAGTATGTTGTTGTATGAAGATATATAGGTGTATAATCGGGATATAGAAGGCCTACTATCAGGGGGTCATGTCCTGTTTATATTACTTTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTAACTTTAATATAAAATGGATTTTTTTGGGGTTTCGAGGGGGGAGATGGCACGGGTTTTTTTTTCTTTTTGGCCCGGGTTCTCTCCCCTCTTGATGTGTGTGTGTTTGTGCCTTTTCTGATTCTTGTTTGCACGTTATGCTCTCATCGTCAGATCAGCAACGAACTATCCTTAATTGGCCGCCCACCGCCCACCGCCCAAATCAGGTATAGGCTAATTAGTTTGAATTTGAACTTGGGCAATTAATTANACAAAAAACGTANANNNCTACNNGTTTTTTATATGATAGCCNACGGAAGCCACTTAATTTGTATTATCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567138" ref_strand="+" ref_description="SGN-U567138 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157348146|emb|CAO22856.1| (e_value=0) unnamed; (*ATH) AT5G66770.1 (e_value=0) | Symbol: None | scarecrow transcription factor family protein | chr5:26677826-26680120 FORWARD | Aliases: MUD21.1, MUD21_1; (*SWP) sp|Q8GVE1|CIGR2_ORYSJ (e_value=3e-57) Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2; ">
      <seq>ctttgtcctccttgaaaggctgagcttttctcaattaaagctaagcacttctaacccccttttcaactctctccctcttcttggggctactctgttagtccactcaaaacttgctcaccaatttcttcttataactgttgttgttgaggtaatgtgtgagtagtgtagcttagtaagatttggtgtggagaatggcctatatgtgtacggacagtgggaatctaatggcaattgctcagcaagtcataaagcaaaagcagcagcaggagcagctccaacagcaagagcaacagcagcagcagcaacaacaattcttgggtgttaatcctttgtgtctcagcccatggacttccaatcaccagaccttaactaatagccccactttaggatatggacttaccgggtcgggttttgcagacccatttcaggtcgccggaggaacagatagcgccgagccgggatttcagttccctaacttggaacatcattcgaccgggtttaggtttgctgatttcggcggtggaccgggtggtgagtttgactcagatgagtggatggagagcttgataggcggcggagattctaccggaagctctaatcttcaatctggttgcgaagcctggcagacgagttccgaattcactaccctctacggagatccgttcccgagttgtccgaatcgactcagtatcggttctgctcctccgcctccaccttcttccgatctcaatggggtcattttttcggaaacccagaaaaatctaagcccactacaaccacagacatctccatgggtcgcaccatcttcatctcctcctccaattgttcaacccgcgagcaaagaatccaaggtggtatcagttgatgtgcagccatgtagttcccctgaaagtttttcgtcaaaaccattgttgaaatccttggtggaatgtgcaagactcgctgaatcagagcctgaaaatgtagtaaaatcactgattcgactaagggaatcagtttcccaacaaggagatccaatggagcgagttgggttctatttcttagaagctctttacaataggctttcgtcgtgtcaagcagagagaactccgtcaatctttggtactgcgccggaggagctcactttgtcatacaaagcctttaatgatgcatgtccctactcaaagtttgctcacttaacggctaatcaggcgattcttgaagcaactgaaaaagcaacgaggattcacattgtagattttggaattgttcatggtatccaatgggcagcttttttacaagctttagcaactagatcagctggtaaaccagtcagtgttagaatctctggcattccatcagtggtattgggtaactctccgtcagcttcacttttagctacagggaatcgtcttcgtgacttcgcgaagcttctggatcttaacttcgaattcgaaccaatattgactccagttcaggaacttaacgggtctagttttcgagttgatccagatgaaatcttagctgtgaacttcatgttgcagctgtacaatttactggacgaaacaaatgttggtgtaaaaactgcactgagtttagccaaatcattgaatccaagcattgtgacattgggtgagtatgaggtgaatttgaatgatgttggattcctgcagcgatttaagaacgcactgaaatactactcaactattttcgagtcattggatccgagcttgacccgagactccgctgagagagtacaagtggaaagactgatacttggccggagaattgccggagcggtgggcctagacgatggcggaaccagaagagaatgtatggaagataaagaacattggaaagaattaatggaaggggctggttttaaaccagtaacacttagccattatgcaatgagtcaagcaaaaattcttctttggaactataattatagttcatcatttggattaattgattctgcccctgggtttctctccttggcttggaaagataatccccttttgactgtttcttcatggcactaattgtgttctacatcagttctgttaggtactttcttctaagtgcttaaatttaaatttcattgctctctgtagattaaaaagttagtatagaaagatgatatttttgagcaagtttaactttgaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="18600" stop="15852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18300" g_stop="16152" g_length="2149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2149" r_length="2149" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U567138" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2149</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18300" e_stop="16152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCCTCCTTGTAAGGCTGAGCTTTTCTCAATTAAAGCTAAGCACTTCTAACCCCCTTTTCAACTCTCTCCCTCTTCTTGGGGCTACTCTGTTAGTCCACTCAAAACTTGCTCACCAATTTCTTCTTATAACTGTTGTTGTTGAGGTAATGTGTGAGTAGTGTAGCTTAGTAAGATTTGGTGTGGAGAATGGCCTATATGTGTACGGACAGTGGGAATCTAATGGCAATTGCTCAGCAAGTCATAAAGCAAAAGCAGCAGCAGGAGCAGCTCCAACAGCAAGAGCAACAGCAGCAGCAGCAACAACAATTCTTGGGTGTTAATCCTTTGTGTCTCAGCCCATGGACTTCCAATCACCAGACCTTAACTAATAGCCCCACTTTAGGATATGGACTTACCGGGTCGGGTTTTGCAGACCCATTTCAGGTCGCCGGAGGAACAGATAGCGCCGAGCCGGGATTTCAGTTCCCTAACTTGGAACATCATTCGACCGGGTTTAGGTTTGCTGATTTCGGCGGTGGACCGGGTGGTGAGTTTGACTCAGATGAGTGGATGGAGAGCTTGATAGGCGGCGGAGATTCTACCGGAAGCTCTAATCTTCAATCTGGTTGCGAAGCCTGGCAGACGAGTTCCGAATTCACTACCCTCTACGGAGATCCGTTCCCGAGTTGTCCGAATCGACTCAGTATCGGTTCTGCTCCTCCGCCTCCACCTTCTTCCGATCTCAATGGGGTCATTTTTTCGGAAACCCAGAAAAATCTAAGCCCACTACAACCACAGACATCTCCATGGGTCGCACCATCTTCATCTCCTCCTCCAATTGTTCAACCCGCGAGCAAAGAATCCAAGGTGGTATCAGTTGATGTGCAGCCATGTAGTTCCCCTGAAAGTTTTTCGTCAAAACCATTGTTGAAATCCTTGGTGGAATGTGCAAGACTCGCTGAATCAGAGCCTGAAAATGTAGTAAAATCATTGATTCGACTAAGGGAATCAGTTTCCCAACAAGGAGATCCAATGGAGCGAGTTGGGTTCTATTTCTTAGAAGCTCTTTACAATAGGCTTTCGTCGTGTCAAGCAGAGAGAACTCCGTCAATCTTTGGTACTGCGCCGGAGGAGCTCACTTTGTCATACAAAGCCTTTAATGATGCATGTCCCTACTCAAAGTTTGCTCACTTAACGGCTAATCAGGCGATTCTTGAAGCAACTGAAAAAGCAACGAGGATTCACATTGTAGATTTTGGAATTGTTCATGGTATCCAATGGGCAGCTTTTTTACAAGCTTTAGCAACTAGATCAGCTGGTAAACCAGTCAGTGTTAGAATCTCTGGCATTCCATCAGTGGTATTGGGTAACTCTCCGTCAGCTTCACTTTTAGCTACAGGGAATCGTCTTCGTGACTTCGCGAAGCTTCTGGATCTTAACTTCGAATTCGAACCAATATTGACTCCAGTTCAGGAACTTAACGGGTCTAGTTTTCGAGTTGATCCAGATGAAATCTTAGCTGTGAACTTCATGTTGCAGCTGTACAATTTACTGGACGAAACAAATGTTGGTGTAAAAACTGCACTGAGTTTAGCCAAATCATTGAATCCAAGCATTGTGACATTGGGTGAGTATGAGGTGAATTTGAATGATGTTGGATTCCTGCAGCGATTTAAGAACGCACTGAAATACTACTCAACTATTTTCGAGTCATTGGATCCGAGCTTGACCCGAGACTCCGCTGAGAGAGTACAAGTGGAAAGACTGATACTTGGCCGGAGAATTGCCGGAGCGGTGGGCCTAGACGATGGCGGAACCAGAAGAGAATGTATGGAAGATAAAGAACATTGGAAAGAATTAATGGAAGGGGCTGGTTTTAAACCAGTAACACTTAGCCATTATGCAATGAGTCAAGCAAAAATTCTTCTTTGGAACTATAATTATAGTTCATCATTTGGATTAATTGATTCTGCCCCTGGGTTTCTCTCCTTGGCTTGGAAAGATAATCCCCTTTTGACTGTTTCTTCATGGCACTAATTGTGTTCTACATCAGTTCTGTTAGGTACTTTCTTCTAAGTGCTTAAATTTAAATTTCATTGCTCTCTGTAGATTAAAAAGTTAGTATAGAAAGATGATATTTTTGAGCAAGTTTAACTTTGAATTTC</genome_strand>
        <mrna_strand>CTTTGTCCTCCTTGAAAGGCTGAGCTTTTCTCAATTAAAGCTAAGCACTTCTAACCCCCTTTTCAACTCTCTCCCTCTTCTTGGGGCTACTCTGTTAGTCCACTCAAAACTTGCTCACCAATTTCTTCTTATAACTGTTGTTGTTGAGGTAATGTGTGAGTAGTGTAGCTTAGTAAGATTTGGTGTGGAGAATGGCCTATATGTGTACGGACAGTGGGAATCTAATGGCAATTGCTCAGCAAGTCATAAAGCAAAAGCAGCAGCAGGAGCAGCTCCAACAGCAAGAGCAACAGCAGCAGCAGCAACAACAATTCTTGGGTGTTAATCCTTTGTGTCTCAGCCCATGGACTTCCAATCACCAGACCTTAACTAATAGCCCCACTTTAGGATATGGACTTACCGGGTCGGGTTTTGCAGACCCATTTCAGGTCGCCGGAGGAACAGATAGCGCCGAGCCGGGATTTCAGTTCCCTAACTTGGAACATCATTCGACCGGGTTTAGGTTTGCTGATTTCGGCGGTGGACCGGGTGGTGAGTTTGACTCAGATGAGTGGATGGAGAGCTTGATAGGCGGCGGAGATTCTACCGGAAGCTCTAATCTTCAATCTGGTTGCGAAGCCTGGCAGACGAGTTCCGAATTCACTACCCTCTACGGAGATCCGTTCCCGAGTTGTCCGAATCGACTCAGTATCGGTTCTGCTCCTCCGCCTCCACCTTCTTCCGATCTCAATGGGGTCATTTTTTCGGAAACCCAGAAAAATCTAAGCCCACTACAACCACAGACATCTCCATGGGTCGCACCATCTTCATCTCCTCCTCCAATTGTTCAACCCGCGAGCAAAGAATCCAAGGTGGTATCAGTTGATGTGCAGCCATGTAGTTCCCCTGAAAGTTTTTCGTCAAAACCATTGTTGAAATCCTTGGTGGAATGTGCAAGACTCGCTGAATCAGAGCCTGAAAATGTAGTAAAATCACTGATTCGACTAAGGGAATCAGTTTCCCAACAAGGAGATCCAATGGAGCGAGTTGGGTTCTATTTCTTAGAAGCTCTTTACAATAGGCTTTCGTCGTGTCAAGCAGAGAGAACTCCGTCAATCTTTGGTACTGCGCCGGAGGAGCTCACTTTGTCATACAAAGCCTTTAATGATGCATGTCCCTACTCAAAGTTTGCTCACTTAACGGCTAATCAGGCGATTCTTGAAGCAACTGAAAAAGCAACGAGGATTCACATTGTAGATTTTGGAATTGTTCATGGTATCCAATGGGCAGCTTTTTTACAAGCTTTAGCAACTAGATCAGCTGGTAAACCAGTCAGTGTTAGAATCTCTGGCATTCCATCAGTGGTATTGGGTAACTCTCCGTCAGCTTCACTTTTAGCTACAGGGAATCGTCTTCGTGACTTCGCGAAGCTTCTGGATCTTAACTTCGAATTCGAACCAATATTGACTCCAGTTCAGGAACTTAACGGGTCTAGTTTTCGAGTTGATCCAGATGAAATCTTAGCTGTGAACTTCATGTTGCAGCTGTACAATTTACTGGACGAAACAAATGTTGGTGTAAAAACTGCACTGAGTTTAGCCAAATCATTGAATCCAAGCATTGTGACATTGGGTGAGTATGAGGTGAATTTGAATGATGTTGGATTCCTGCAGCGATTTAAGAACGCACTGAAATACTACTCAACTATTTTCGAGTCATTGGATCCGAGCTTGACCCGAGACTCCGCTGAGAGAGTACAAGTGGAAAGACTGATACTTGGCCGGAGAATTGCCGGAGCGGTGGGCCTAGACGATGGCGGAACCAGAAGAGAATGTATGGAAGATAAAGAACATTGGAAAGAATTAATGGAAGGGGCTGGTTTTAAACCAGTAACACTTAGCCATTATGCAATGAGTCAAGCAAAAATTCTTCTTTGGAACTATAATTATAGTTCATCATTTGGATTAATTGATTCTGCCCCTGGGTTTCTCTCCTTGGCTTGGAAAGATAATCCCCTTTTGACTGTTTCTTCATGGCACTAATTGTGTTCTACATCAGTTCTGTTAGGTACTTTCTTCTAAGTGCTTAAATTTAAATTTCATTGCTCTCTGTAGATTAAAAAGTTAGTATAGAAAGATGATATTTTTGAGCAAGTTTAACTTTGAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580353" ref_strand="+" ref_description="SGN-U580353 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|15240075|ref|NP_201477.1| (e_value=0) succinate dehydrogenase [ubiquinone], putative [Arabidopsis thaliana]; (*ATH) AT5G66760.1 (e_value=0)  Symbol: None | succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial / flavoprotein subunit of complex II, identical to SP:O82663 Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1) (FP) (Flavopro... ; (*SWP) sp|O82663|DHSA1_ARATH (e_value=0) Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1; ">
      <seq>gtttcntttagaattttaaaagaatgatatttcatattttcttgcgaaaaaacttttttttaggatttcattatattcaggtttggaatatctcaaaattaatatttttaaaataaaatttacacgttaaacgtaatactattattttaggtctacataaacataaattaattttgcgattaaattacgggtttgtcgtacagagcgtgacgtggccgtttagtaatattggttaacattangggtagttccagtaaagtgggaacataatcgtcagtcgccttatactttgtcccggtacccaaaaaaagagcatcccactttcacatccatttgattgctctacattgtattctgtacttcttcatctataactccattcaatctccgaacagaatccgcaccggcatattggtttccgatacgtttcagaatgtggcgctgtgtgtcgcgtggtcttcgcgcttcctccaacagatctatctccggcggcggccattttcgccgactcttctcctcacaaactaatgtgggaggctcgtcctacacggtagtcgatcacacatatgatgcggtggtggttggtgcaggcggtgctgggcttcgtgcagcaatagggttgtctgagcatggattcaatactgcttgcataaccaagctctttcctactcgatctcacactgttgcagctcagggtggtataaatgctgcattaggcaacatgacagaagacgattggaggtggcacatgtatgatacagtcaaaggaagtgattggttaggtgatcaggatgctatccaatacatgtgtagagaagctccaaaagcagttatagagcttgagaattatggtttgcctttctctcgaacagaagatggtaaaatatatcaacgtgcatttggtggtcaaagcctggactttgggaaaggaggacaagcatatcgttgtgcatgcgctgcagatcggactgggcatgctctattgcatactctttatggccaggccatgaagcataatacacagttttttgtggaatatttcgctttggatttactaatgaacagtgatgggagctgccaaggtgtaatagcactaaatatggaggatggtaccttgcatcgattccgtgctgccaatacaattttggccaccgggggttatggccgagcttacttctcggcaacatctgctcatacttgcactggagatggtaatgctatggttgcgcgtgctgggcttcctcttcaggatcttgagtttgtgcaatttcatccaactggtatatatggggctggttgcctcattactgaaggatctcgcggtgaaggtggtatcctgaggaatagtgagggtgagcgatttatggaaaggtatgccccaactgccaaggatcttgcctcaagagatgttgtttccagatctatgactatggaaattcgagaagggcgtggtgtaggacctttgaaggaccatatctatcttcacctcaatcacttacctccagaggttcttaaggagagacttccgggtatctctgaaacagctgccattttcgctggtgttgatgtaactaaggaaccaattcctgttttacctaccgtgcattataatatgggaggaatcccaactaattaccatggacaggtggtcactaaaaacggggatgatccagatgctgtgatccctggactgatggctgctggtgaagcagcatgcgcatctgttcatggtgccaatcgtcttggtgcaaattctcttctagatattgttgtttttggacgggcatgtgctaatagggttgcagagatccaaaaaccaggcgcggaacaaaagccacttgaaaaagatgctggggagaggaccattgcatggttggacaagattaggaactcaaatggttcattgcccacctcaaagataaggctggacatgcaaagagttatgcaaaacaatgctgctgtcttccgcacacaagagacattagaggaaggttgccagctcattgacaaaacatgggagagtttccatgatgttcagttgaaggacagaggtttaatatggaacacagatcttatagagactattgagttggaaaatcttttaattaatgcatgcatcaccatgcactcagccgaggcaagaaaagaaagcagaggagctcatgctcgtgaagattttacgaaaagagatgatgagaagtggatgaaacacaccataggatattgggaggacgagaaagttcggctagaatacagaccagtgcatatgaacactctagatgacgaagtcgagtcgttcccaccaaaggctcgtgtctactgatatactcatttatagggggatttggatggcgtagaagttgataataaggaaggttgcaataaatcgcgaaaattgtgaaattttggtaataactgtttgatttatttgtgcgatgaattgtaagcagcctgtgaagtgttcataaatattagaagcagaacaccgtttgtcttgtaatcaggaagcaaggcttcctgacttttcgatcttgtagaagatgatggaatcacttgtttatgctcttatatactctacttcttgcattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="36801" stop="29103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36501" g_stop="35975" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35974" i_stop="35536" i_length="439">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35535" g_stop="35368" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="694" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35367" i_stop="34830" i_length="538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34829" g_stop="34742" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="782" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34741" i_stop="34386" i_length="356">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34385" g_stop="34239" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="929" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34238" i_stop="34051" i_length="188">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34050" g_stop="33910" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="1070" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33909" i_stop="33615" i_length="295">
            <donor d_prob="0.500" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33614" g_stop="33529" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1071" r_stop="1156" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33528" i_stop="33440" i_length="89">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33439" g_stop="33347" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1157" r_stop="1249" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33346" i_stop="33252" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33251" g_stop="33188" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1250" r_stop="1313" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33187" i_stop="32985" i_length="203">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32984" g_stop="32841" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1314" r_stop="1457" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="32840" i_stop="32083" i_length="758">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="32082" g_stop="31895" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1458" r_stop="1645" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="31894" i_stop="31781" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="31780" g_stop="31606" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1646" r_stop="1820" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="31605" i_stop="31533" i_length="73">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="31532" g_stop="31362" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1821" r_stop="1991" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="31361" i_stop="31204" i_length="158">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="31203" g_stop="31134" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1992" r_stop="2061" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="31133" i_stop="31040" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="31039" g_stop="30919" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="2062" r_stop="2182" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="30918" i_stop="30831" i_length="88">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="30830" g_stop="30793" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="2183" r_stop="2220" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="30792" i_stop="29776" i_length="1017">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="29775" g_stop="29403" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="2221" r_stop="2593" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U580353" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36501" e_stop="35975"/>
          <exon e_start="35535" e_stop="35368"/>
          <exon e_start="34829" e_stop="34742"/>
          <exon e_start="34385" e_stop="34239"/>
          <exon e_start="34050" e_stop="33910"/>
          <exon e_start="33614" e_stop="33529"/>
          <exon e_start="33439" e_stop="33347"/>
          <exon e_start="33251" e_stop="33188"/>
          <exon e_start="32984" e_stop="32841"/>
          <exon e_start="32082" e_stop="31895"/>
          <exon e_start="31780" e_stop="31606"/>
          <exon e_start="31532" e_stop="31362"/>
          <exon e_start="31203" e_stop="31134"/>
          <exon e_start="31039" e_stop="30919"/>
          <exon e_start="30830" e_stop="30793"/>
          <exon e_start="29775" e_stop="29403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATTTAGAATTTTAAAAGAATGATATTTCATATTTTCTTGCGAAAAAACTTTTTTTTAGGATTTCATTATATTCAGGTTTGGAATATCTCAAAATTAATATTTTTAAAATAAAATTTACACGTTAAACGTAATACTATTATTTTAGGTCTACATAAACATAAATTAATTTTGCGATTAAATTACGGGTTTGTCGTACAGAGCGTGACGGTGGCCGTTTAGTAATATTGGTTAACATTAGGGGTAGTTCCAGTAAAGTGGGAACATAATCGTCAGTCGCCTTATACTTTGTCCCGGTACCCAAAAAAAGAGCATCCCACTTTCACATCCATTTGATTGCTCTACATTGTATTCTGTACTTCTTCATCTATAACTCCATTCAATCTCCGAACAGAATCCGCACCGGCATATTGGTTTCCGATACGTTTCAGAATGTGGCGCTGTGTGTCGCGTGGTCTTCGCGCTTCCTCCAACAGATCTATCTCCGGCGGCGGCCATTTTCGCCGACTCTTCTCCTCACAAACTGTACGGTCCCTCTCTCTTTTTCTCAGTCTATTTATTCGATCAACTAATTATAAGCACCCGATTCTATCGTTTTATTGAATCTTATTGATTTTCGATTGATACATTTTGTATTGAAGCGTGTTCTAATCATTGTTGGTGACCTAGCTGTTGGCGAATCTTAGGATCTTTGGTTGATTGAGTTTTAGTTTTGACATCGCATCAGGTTAACGACCTAGATGTTATTGCATTTGATCTTCTGTTTTGAAGGACTTTGTGTGCGATTGTTCTAGAATCTCCGAGCTTTTAAGATTTCTCAATTTAGCCTTAAAGCTCTTTTTTATTATCATTTTTACTATTTTTTACTTTTATAAGCTGAGGTTTCACTTTTCTATTTCATAATTATATATATAAGATTCTGATGATAATTTTTCATTGTTGAATACTGTGTGCTGCCTAGCAGAATGTGGGAGGCTCGTCCTACACGGTAGTCGATCACACATATGATGCGGTGGTGGTTGGTGCAGGCGGTGCTGGGCTTCGTGCAGCAATAGGGTTGTCTGAGCATGGATTCAATACTGCTTGCATAACCAAGCTCTTTCCTACTCGATCTCACACTGTTGCAGCTCAGGTACCTGGATTCTAACTCTGCCAATTTTTATTTATATTTATTTTCTTGGACTAGGCATTATTGTTGTATCATTGTATGGTAGGGAGGAGAAGACTCCAAATTTTAGAAGGAAATATTGTTGCACAAAGAACATCGAATAATATACTCTAATTGGGACTCTTTGCTCCTTGTTGTCGGGTTGCATGTTTATTTGGTGGGCTGGGCCAACTAGACAATACTCATTTTTACGCTGCATTTTCTTGGAGATGAATAGAAACTTGAACAAGGTTCACTGGATTTACTTTTAAAAAATTAAACTCATGACAGTGGCAGTTGAGATAGATTTGTGTTTTAGTTCGTACAGAATGCTATCTGCTAGTAAGTGAGAGATTACTTAAATATTATTGTTCTTGCTTGTGTCAATCTTGCTAACTTAGAGAAATTGGATAGAAAGCTGGTTTGCTCTGCAGTTTGATGGGTCTGGATTTGAAGATTGATTGACTAGAATAGGATTTTACATGTAATTGCTTAAGTTTTGGTTTGTGATTTTCCTTTGTAGGGTGGTATAAATGCTGCATTAGGCAACATGACAGAAGACGATTGGAGGTGGCACATGTATGATACAGTCAAAGGAAGTGATTGGTTAGGTAAGGTTTATCTTGAAGTCAGATTTTCTCTATGTCTGTTGGCATTAACTCAATGCTTCTTTTGTATGAATAAACCACGTGAAGCTCAAAAGTATAGATTAGAAATATGCAGCTTGACAGTTACAGTTTTATCTCTTACTTGGACCTGTTGTACTTCAAAATAGAACCAATTGCTTTCAATGGGCCAAAGTTACACGGTTTTAACCACTTTGATGTATAAACTCTATGACCTGTTTTACATTTTTGGCAAAACCAATAATTTTGTTTTGGAGAAAGGTATGAACTGGCCAACTTTTGGACCTTTGATATTATGGCTTGGGTTTTTCTTTGTCTCAATGCAAGTGTGTTGATTCCAGGTGATCAGGATGCTATCCAATACATGTGTAGAGAAGCTCCAAAAGCAGTTATAGAGCTTGAGAATTATGGTTTGCCTTTCTCTCGAACAGAAGATGGTAAAATATATCAACGTGCATTTGGTGGTCAAAGCCTGGACTTTGGGAAAGGTAAGAAGTTGAGCACTTGATCTAGTTGTATTATTTCCTGGGTGCCAAGTCGCATTTGTTAGGGAGCGCTTTACCCTCTGATATGGGACTTTTTGCGCGAATCCAGATTTAGTCGGACTCCAATCTGGGTATCCAGGAAACCAAAGAAAAAAAAATTCTCAATCTGACTCTTGTTTTCTCTTGGACAGGAGGACAAGCATATCGTTGTGCATGCGCTGCAGATCGGACTGGGCATGCTCTATTGCATACTCTTTATGGCCAGGCCATGAAGCATAATACACAGTTTTTTGTGGAATATTTCGCTTTGGATTTACTAATGAACAGTGATGGTATTGTCTTCTACTTAGAAACTCAGTTTTATGTCATATGATTAAATATTAGCCTAGTTTGATATTACTTGACTTGCACTGTATACTTTGAAACTTTGTGGTAGTAATCTAGCATGTCATACTAAAAATTATCCTGTATTTCTTTTGATTTTTTAACATTTTTCTGATATGAATATTTATCAGTATACATGTGGTTGAAGTTATATGGAGATTCATTGGACCTCTTGCTCATTTTTAGCTGTTTCATTCTACTAATCAACTCTTCTCTGTGCTTTAAATAATGTGTCGACATCAGGGAGCTGCCAAGGTGTAATAGCACTAAATATGGAGGATGGTACCTTGCATCGATTCCGTGCTGCCAATACAATTTTGGCCACCGGGGTACTTACTGGTTAACATTGACCTCTACTTAGACCTCTTGAAGTAGTAATGAATTTGTAAGCGTTCTCTTTTATAAATGTTTGGATTAGGGTTATGGCCGAGCTTACTTCTCGGCAACATCTGCTCATACTTGCACTGGAGATGGTAATGCTATGGTTGCGCGTGCTGGGCTTCCTCTTCAGGTCATTCTATAATGACATCTTCTGACCATGTCAATTCCCCCTCCCCCCTTCTATGGTACGTTATTTTAAATAAACTCTGCTATGTCTCTTTGCAGGATCTTGAGTTTGTGCAATTTCATCCAACTGGTATATATGGGGCTGGTTGCCTCATTACTGAAGGTTTGTTTCTTCTTCAATGCTATTAGTGATGGTTATAATTATATTGATTGTCCATTCTTCTGTCAATTGTTCTTCCATTCGTGTTTCCTGATGTACAGTGTTTTTCTTTCCTTTTTGAGAGTGATTTCTTGAGTATAGTATTTAACTTTTCTGTTGACATTCTTGAATTTCTATTTGTAACAAGTGCCTCATTCCATGCTTAGGATCTCGCGGTGAAGGTGGTATCCTGAGGAATAGTGAGGGTGAGCGATTTATGGAAAGGTATGCCCCAACTGCCAAGGATCTTGCCTCAAGAGATGTTGTTTCCAGATCTATGACTATGGAAATTCGAGAAGGGCGTGGTGTAGGTATGATGTCATTAATTTAGCCGAATTAAGAAGTTTATTCTTTTAGCACTCTTGTAAGAGCCCTTGTCTTAAGCTTAAGTCATTGTGGTCTGTGGTGGAGTAAGATTCTATAGGCTTAAAATGCACTGGATGGATATCGACCGCGAAGTTTATGATCTGTCTGTTTAAAGTCATCATGTTACGATGACCATAGTGAAAGTCTGAAATGCGAGACCTTTATCTAATTGGATGTATTATATTCAATTCATCTCTAGCTTCTGTCTGACTTAGACGTCATTGTTATTTTTATTTGTTTAGAGCATAATTATATAGGCATGCATGAGTATACTAACGTGAGTGCTCCTCCAATTTAGAAGCTTGTAAACTTTATCTCTAGACAATATGTTTGATGGTAAGCCACCTAAATCGTAAGGTAATTTTGCTATAAAGTCAACTGCATTTGTAATACAGCAACAATCTCAATTAAATAAATAGCAAATGTTTCAACTCTGCATTGAGATATACTAGTTCATGAGAACTACTCATCGACCAATTTCAATTATTAGTGACAAGTGAAGCTTGTTTGTTGTGAAAACTTTAAGTATCATAACTTCATAAGTGTGTGTGTGTGAGACTGCAAATGACAGTACTTATTCTGAGTATTTTGGATGTTTGTGGCACATGTGTTCAGGATGAACTCCTGCCCTGTTTCCTCCCCTTTTTCTTCCTCCTCTAAAGCAGTTTTCAAACGTCTGATATTATTGTCAAACTTTTGGTAGGACCTTTGAAGGACCATATCTATCTTCACCTCAATCACTTACCTCCAGAGGTTCTTAAGGAGAGACTTCCGGGTATCTCTGAAACAGCTGCCATTTTCGCTGGTGTTGATGTAACTAAGGAACCAATTCCTGTTTTACCTACCGTGCATTATAATATGGGAGGAATCCCAACTAATTACCATGGACAGGTATGAAAAATTAGTTAACGTCTCCCTCTCTGAAAATCTATTTTTCAACTTTTGTTTTTCTTACCTGCTCCATTTTTGAGTCTGAACTCATTTTTTGTATGTTTTGTTTGGAAGGTGGTCACTAAAAACGGGGATGATCCAGATGCTGTGATCCCTGGACTGATGGCTGCTGGTGAAGCAGCATGCGCATCTGTTCATGGTGCCAATCGTCTTGGTGCAAATTCTCTTCTAGATATTGTTGTTTTTGGACGGGCATGTGCTAATAGGGTTGCAGAGATCCAAAAACCAGGTTAGAGAATTTGTTTATATAATTTTTAGGCATGCATAACATGTTTAAGATTTCTGAACTTTCATATCTCCAGGCGCGGAACAAAAGCCACTTGAAAAAGATGCTGGGGAGAGGACCATTGCATGGTTGGACAAGATTAGGAACTCAAATGGTTCATTGCCCACCTCAAAGATAAGGCTGGACATGCAAAGAGTTATGCAAAACAATGCTGCTGTCTTCCGCACACAAGAGACATTAGAGGAAGGTAGGAAGAGGAGGTGTTTTCATATTTTTAAAGTTTATCTATATCATTTTTATTTTTTTTTGCAATAAGTGTCTTGGGAAGGTTTTATTTTTTATTTTCTTTTAAATATTCGGAGACTTTATCAGCTGAGCTGACTATTTTCTCTGTTGCGGTTACAGGTTGCCAGCTCATTGACAAAACATGGGAGAGTTTCCATGATGTTCAGTTGAAGGACAGAGGTTTAATATGGTATTATGGAGGAGATTATGAATCGTTATTAAATATTAGGTCTTCCTTTTCGTCTTGTTGTGTTCCTGAATTTCCTTCTATTTCAAATTCATAGGAACACAGATCTTATAGAGACTATTGAGTTGGAAAATCTTTTAATTAATGCATGCATCACCATGCACTCAGCCGAGGCAAGAAAAGAAAGCAGAGGAGCTCATGCTCGTGAAGATTTTACGGTCAGTTTCAATTTCTTATGAATCAGATAGTAGTGCTCTTTTTTTTCTTGTTTGTTCCTAATGGTTTGAACTTTTGATGGTTTTGCAGAAAAGAGATGATGAGAAGTGGATGAAACACACCATAGGGTAAGTGTTTTCCTTGTTTATTTTGATGGCTTACTTCTAGTCATCTTTCCTTAGTCTCTGCAATTGATGAAAGGTTTGCTTGATCATCCATTAAATCACCTTTCCATGAACATATCTTGTTGGGAGGGAGGGAAAGCGGAGGAGTATTGCAACCATTTTTGAGAATCTGTACCTAGTGTGATCTCACAAGTGGAATTTGGAAAGGTGGGGTGTATGCAGACCTTACGCCGACCTTGTTGAGGTAGAAAAGTAGTTTCTGACAGATCCTCGGCTCAAGAAAAGCATGATCTAAAACTGATCTGACAAATACTAAAGTAAAAGCTATAGTGAAAATTTTATGGAAATGAGAAGTAGGGGCAACAAAAACAATAAAGATAGCCTCAGTAAAAGAGACAACAACAAAAATAGCTGAAAAACTGAAGAATAGGATAATAATAATAATAATTCTGATAAGAGGGAGCAAACAAGGTGCTCTAAGCTAGTAGCCTGGAACCATGCTCTCCCGTGGGAAAGAGAGAAATTGCTTGATTACCTACTAACCCCCTCTACCCTGCCTTCATGTTTTCCCATCTTTGGTCATGTTCTCAATGAGCTGAAGATGTGTTATATTATGTCTTAATTGTTTCTCCCCAATTCTTTTTCGGTCTACCTCTACCTCTTGTTGGGCCCATCACTGGCAGCCTCTCTCAAGTCTCACCTCTTCATTGGAACTTTTGTGTTCCTTCTCTCTACATGTCCGAACAATCTCTAATCCTTCCTTCCTGCATCTTTTCTCTCGTAGTGTATCCATACATCCATCATCTCGTGAAATTGATGTAATACTTCAAAAAATTATTTTTTTTTTGTTAAAATAGTATTATCCTTCAAAAATTATTATCCATCGGAATGTGTTCCTGTGGTAGTGACTTAATTGTTCTCCAGTGCTCTTACCATGATTGATGCGCTCTACCGATTAAAGAAATCATGGTAGATGTACCCTACCAAGTGTTCAGCTTAACAAAGTTCATATATCTGCAGATATTGGGAGGACGAGAAAGTTCGGCTAGAATACAGACCAGTGCATATGAACACTCTAGATGACGAAGTCGAGTCGTTCCCACCAAAGGCTCGTGTCTACTGATATACTCATTTATAGGGGGATTTGGATGGCGTAGAAGTTGATAATAAGGAAGGTTGCAATAAATCGCGAAAATTGTGAAATTTTGGTAATAACTGTTTGATTTATTTGTGCGATGAATTGTAAGCAGCCTGTGAAGTGTTCATAAATATTAGAAGCAGAACACCGTTTGTCTTGTAATCAGGAAGCAAGGCTTCCTGACTTTTCGATCTTGTAGAAGATGATGGAATCACTTGTTTATGCTCTTATATACTCTACTTCTTGCATTTTGAC</genome_strand>
        <mrna_strand>GTTTCNTTTAGAATTTTAAAAGAATGATATTTCATATTTTCTTGCGAAAAAACTTTTTTTTAGGATTTCATTATATTCAGGTTTGGAATATCTCAAAATTAATATTTTTAAAATAAAATTTACACGTTAAACGTAATACTATTATTTTAGGTCTACATAAACATAAATTAATTTTGCGATTAAATTACGGGTTTGTCGTACAGAGCGTGAC-GTGGCCGTTTAGTAATATTGGTTAACATTANGGGTAGTTCCAGTAAAGTGGGAACATAATCGTCAGTCGCCTTATACTTTGTCCCGGTACCCAAAAAAAGAGCATCCCACTTTCACATCCATTTGATTGCTCTACATTGTATTCTGTACTTCTTCATCTATAACTCCATTCAATCTCCGAACAGAATCCGCACCGGCATATTGGTTTCCGATACGTTTCAGAATGTGGCGCTGTGTGTCGCGTGGTCTTCGCGCTTCCTCCAACAGATCTATCTCCGGCGGCGGCCATTTTCGCCGACTCTTCTCCTCACAAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGGGAGGCTCGTCCTACACGGTAGTCGATCACACATATGATGCGGTGGTGGTTGGTGCAGGCGGTGCTGGGCTTCGTGCAGCAATAGGGTTGTCTGAGCATGGATTCAATACTGCTTGCATAACCAAGCTCTTTCCTACTCGATCTCACACTGTTGCAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTATAAATGCTGCATTAGGCAACATGACAGAAGACGATTGGAGGTGGCACATGTATGATACAGTCAAAGGAAGTGATTGGTTAG....................................................................................................................................................................................................................................................................................................................................................................GTGATCAGGATGCTATCCAATACATGTGTAGAGAAGCTCCAAAAGCAGTTATAGAGCTTGAGAATTATGGTTTGCCTTTCTCTCGAACAGAAGATGGTAAAATATATCAACGTGCATTTGGTGGTCAAAGCCTGGACTTTGGGAAAG............................................................................................................................................................................................GAGGACAAGCATATCGTTGTGCATGCGCTGCAGATCGGACTGGGCATGCTCTATTGCATACTCTTTATGGCCAGGCCATGAAGCATAATACACAGTTTTTTGTGGAATATTTCGCTTTGGATTTACTAATGAACAGTGATG.......................................................................................................................................................................................................................................................................................................GGAGCTGCCAAGGTGTAATAGCACTAAATATGGAGGATGGTACCTTGCATCGATTCCGTGCTGCCAATACAATTTTGGCCACCGGG.........................................................................................GGTTATGGCCGAGCTTACTTCTCGGCAACATCTGCTCATACTTGCACTGGAGATGGTAATGCTATGGTTGCGCGTGCTGGGCTTCCTCTTCAG...............................................................................................GATCTTGAGTTTGTGCAATTTCATCCAACTGGTATATATGGGGCTGGTTGCCTCATTACTGAAG...........................................................................................................................................................................................................GATCTCGCGGTGAAGGTGGTATCCTGAGGAATAGTGAGGGTGAGCGATTTATGGAAAGGTATGCCCCAACTGCCAAGGATCTTGCCTCAAGAGATGTTGTTTCCAGATCTATGACTATGGAAATTCGAGAAGGGCGTGGTGTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTTGAAGGACCATATCTATCTTCACCTCAATCACTTACCTCCAGAGGTTCTTAAGGAGAGACTTCCGGGTATCTCTGAAACAGCTGCCATTTTCGCTGGTGTTGATGTAACTAAGGAACCAATTCCTGTTTTACCTACCGTGCATTATAATATGGGAGGAATCCCAACTAATTACCATGGACAG..................................................................................................................GTGGTCACTAAAAACGGGGATGATCCAGATGCTGTGATCCCTGGACTGATGGCTGCTGGTGAAGCAGCATGCGCATCTGTTCATGGTGCCAATCGTCTTGGTGCAAATTCTCTTCTAGATATTGTTGTTTTTGGACGGGCATGTGCTAATAGGGTTGCAGAGATCCAAAAACCAG.........................................................................GCGCGGAACAAAAGCCACTTGAAAAAGATGCTGGGGAGAGGACCATTGCATGGTTGGACAAGATTAGGAACTCAAATGGTTCATTGCCCACCTCAAAGATAAGGCTGGACATGCAAAGAGTTATGCAAAACAATGCTGCTGTCTTCCGCACACAAGAGACATTAGAGGAAG..............................................................................................................................................................GTTGCCAGCTCATTGACAAAACATGGGAGAGTTTCCATGATGTTCAGTTGAAGGACAGAGGTTTAATATG..............................................................................................GAACACAGATCTTATAGAGACTATTGAGTTGGAAAATCTTTTAATTAATGCATGCATCACCATGCACTCAGCCGAGGCAAGAAAAGAAAGCAGAGGAGCTCATGCTCGTGAAGATTTTACG........................................................................................AAAAGAGATGATGAGAAGTGGATGAAACACACCATAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGGGAGGACGAGAAAGTTCGGCTAGAATACAGACCAGTGCATATGAACACTCTAGATGACGAAGTCGAGTCGTTCCCACCAAAGGCTCGTGTCTACTGATATACTCATTTATAGGGGGATTTGGATGGCGTAGAAGTTGATAATAAGGAAGGTTGCAATAAATCGCGAAAATTGTGAAATTTTGGTAATAACTGTTTGATTTATTTGTGCGATGAATTGTAAGCAGCCTGTGAAGTGTTCATAAATATTAGAAGCAGAACACCGTTTGTCTTGTAATCAGGAAGCAAGGCTTCCTGACTTTTCGATCTTGTAGAAGATGATGGAATCACTTGTTTATGCTCTTATATACTCTACTTCTTGCATTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570387" ref_strand="+" ref_description="SGN-U570387 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>tgagaatctgtacctagtgtgatctcacaagtggaatttggaaaggtggggtgtatgcagaccttacgccgaccttgttgaggtagaaaagtagtttctgacagatcctcggctcaagaaaagcatgatctaaaactgatctgacaaatactaaaataaaagctatagtgaaaattttatggaaatgagaagtaggggcaacaaaaacaataaagatagcctcagtaaaagagacaacaacaaaaatagctgaaaaactgaagaataggataataataataataattctgataagagggagcaaacaaggtgctctaagctagtagcctggaaccatgctctcccgtgggaaagagagaaattgcttgattacctactaaccccctctaccctgccttcatgttttcccatctttggtcatgttctcaatgagctgaagatgtgttatattatgtcttaattgtatctccccaattctttttcggtctacctctacctcttgttgggcccatcactggcagcctctctcaagtctcacctcttcattggaacttttgtgttccttctctctacatgtccnaacaatctctaatccttccttcctgcatcttttctctcgtagtgtatccntacntccntcatctcgtgaaattgatgtaatacttcaaaaaattatttttttttttgttaaaatagtattatccttcaataatnantatccatcngna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="30933" stop="29606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30633" g_stop="29907" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U570387" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30633" e_stop="29907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATCTGTACCTAGTGTGATCTCACAAGTGGAATTTGGAAAGGTGGGGTGTATGCAGACCTTACGCCGACCTTGTTGAGGTAGAAAAGTAGTTTCTGACAGATCCTCGGCTCAAGAAAAGCATGATCTAAAACTGATCTGACAAATACTAAAGTAAAAGCTATAGTGAAAATTTTATGGAAATGAGAAGTAGGGGCAACAAAAACAATAAAGATAGCCTCAGTAAAAGAGACAACAACAAAAATAGCTGAAAAACTGAAGAATAGGATAATAATAATAATAATTCTGATAAGAGGGAGCAAACAAGGTGCTCTAAGCTAGTAGCCTGGAACCATGCTCTCCCGTGGGAAAGAGAGAAATTGCTTGATTACCTACTAACCCCCTCTACCCTGCCTTCATGTTTTCCCATCTTTGGTCATGTTCTCAATGAGCTGAAGATGTGTTATATTATGTCTTAATTGTTTCTCCCCAATTCTTTTTCGGTCTACCTCTACCTCTTGTTGGGCCCATCACTGGCAGCCTCTCTCAAGTCTCACCTCTTCATTGGAACTTTTGTGTTCCTTCTCTCTACATGTCCGAACAATCTCTAATCCTTCCTTCCTGCATCTTTTCTCTCGTAGTGTATCCATACATCCATCATCTCGTGAAATTGATGTAATACTTCAAAAAATTA-TTTTTTTTTTGTTAAAATAGTATTATCCTTCAAAAATTATTATCCATCGGAA</genome_strand>
        <mrna_strand>TGAGAATCTGTACCTAGTGTGATCTCACAAGTGGAATTTGGAAAGGTGGGGTGTATGCAGACCTTACGCCGACCTTGTTGAGGTAGAAAAGTAGTTTCTGACAGATCCTCGGCTCAAGAAAAGCATGATCTAAAACTGATCTGACAAATACTAAAATAAAAGCTATAGTGAAAATTTTATGGAAATGAGAAGTAGGGGCAACAAAAACAATAAAGATAGCCTCAGTAAAAGAGACAACAACAAAAATAGCTGAAAAACTGAAGAATAGGATAATAATAATAATAATTCTGATAAGAGGGAGCAAACAAGGTGCTCTAAGCTAGTAGCCTGGAACCATGCTCTCCCGTGGGAAAGAGAGAAATTGCTTGATTACCTACTAACCCCCTCTACCCTGCCTTCATGTTTTCCCATCTTTGGTCATGTTCTCAATGAGCTGAAGATGTGTTATATTATGTCTTAATTGTATCTCCCCAATTCTTTTTCGGTCTACCTCTACCTCTTGTTGGGCCCATCACTGGCAGCCTCTCTCAAGTCTCACCTCTTCATTGGAACTTTTGTGTTCCTTCTCTCTACATGTCCNAACAATCTCTAATCCTTCCTTCCTGCATCTTTTCTCTCGTAGTGTATCCNTACNTCCNTCATCTCGTGAAATTGATGTAATACTTCAAAAAATTATTTTTTTTTTTGTTAAAATAGTATTATCCTTCAATAATNANTATCCATCNGNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592750" ref_strand="+" ref_description="SGN-U592750 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115470493|ref|NP_001058845.1| (e_value=2e-136) Os07g0134800; (*ATH) AT5G66760.1 (e_value=6e-138)  Symbol: None | succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial / flavoprotein subunit of complex II, identical to SP:O82663 Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1) (FP) (Flavopro... ; (*SWP) sp|Q6ZDY8|DHSA_ORYSJ (e_value=1e-137) Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1; ">
      <seq>gtataaatgctgcattaggcaacatgacagaagacgattggaggtggcacatgtatgatacagtcaaaggaagtgattggttaggtgatcaggatgctatccaatacatgtgtagagaagctccaaaagcagttatagagcttgagaattatggtttgcctttctctcgaacagaagatggtaaaatatatcaacgtgcatttggtggtcaaagcctggactttgggaaaggaggacaagcatatcgttgtgcatgcgctgcagatcggactgggcatgctctattgcatactctttatggccaggccatgaagcataatacacagttttttgtggaatatttcgctttggatttactaatgaacagtgatgggagctgccaaggtgtaatagcactaaatatggaggatggtaccttgcatcgattccgtgctgccaatacaattttggccaccgggggttatggccgagcttacttctcggcaacatctgctcatacttgcactggagatggtaatgctatggttgcgcgtgctgggcttcctcttcaggatcttgagtttgtgcaatttcatccaactggtatatatggggctggttgcctcattactgaaggatctcgcggtgaaggtggtatcctgaggaatagtgagggtgagcgatttatggaaaggtatgccccaactgccaaggatcttgcctcaagagatgttgtttccatgatgttcagttgaaggacagaggtttaatatggaacacagatcttatagagactattgagttggaaaatcttttattaatgcatgcatcaccatgcactcagccgaggcaagaaaagaaagcagaggagctcatgctcgtgaagattttaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="35125" stop="30620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34825" g_stop="34742" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34741" i_stop="34386" i_length="356">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34385" g_stop="34239" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="231" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34238" i_stop="34051" i_length="188">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34050" g_stop="33910" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="372" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33909" i_stop="33615" i_length="295">
            <donor d_prob="0.500" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33614" g_stop="33529" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="458" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33528" i_stop="33440" i_length="89">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33439" g_stop="33347" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="551" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33346" i_stop="33252" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33251" g_stop="33188" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="615" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33187" i_stop="32985" i_length="203">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32984" g_stop="32887" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="713" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32886" i_stop="31174" i_length="1713">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31173" g_stop="31134" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="753" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31133" i_stop="31040" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31039" g_stop="30919" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="873" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U592750" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34825" e_stop="34742"/>
          <exon e_start="34385" e_stop="34239"/>
          <exon e_start="34050" e_stop="33910"/>
          <exon e_start="33614" e_stop="33529"/>
          <exon e_start="33439" e_stop="33347"/>
          <exon e_start="33251" e_stop="33188"/>
          <exon e_start="32984" e_stop="32887"/>
          <exon e_start="31173" e_stop="31134"/>
          <exon e_start="31039" e_stop="30919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAAATGCTGCATTAGGCAACATGACAGAAGACGATTGGAGGTGGCACATGTATGATACAGTCAAAGGAAGTGATTGGTTAGGTAAGGTTTATCTTGAAGTCAGATTTTCTCTATGTCTGTTGGCATTAACTCAATGCTTCTTTTGTATGAATAAACCACGTGAAGCTCAAAAGTATAGATTAGAAATATGCAGCTTGACAGTTACAGTTTTATCTCTTACTTGGACCTGTTGTACTTCAAAATAGAACCAATTGCTTTCAATGGGCCAAAGTTACACGGTTTTAACCACTTTGATGTATAAACTCTATGACCTGTTTTACATTTTTGGCAAAACCAATAATTTTGTTTTGGAGAAAGGTATGAACTGGCCAACTTTTGGACCTTTGATATTATGGCTTGGGTTTTTCTTTGTCTCAATGCAAGTGTGTTGATTCCAGGTGATCAGGATGCTATCCAATACATGTGTAGAGAAGCTCCAAAAGCAGTTATAGAGCTTGAGAATTATGGTTTGCCTTTCTCTCGAACAGAAGATGGTAAAATATATCAACGTGCATTTGGTGGTCAAAGCCTGGACTTTGGGAAAGGTAAGAAGTTGAGCACTTGATCTAGTTGTATTATTTCCTGGGTGCCAAGTCGCATTTGTTAGGGAGCGCTTTACCCTCTGATATGGGACTTTTTGCGCGAATCCAGATTTAGTCGGACTCCAATCTGGGTATCCAGGAAACCAAAGAAAAAAAAATTCTCAATCTGACTCTTGTTTTCTCTTGGACAGGAGGACAAGCATATCGTTGTGCATGCGCTGCAGATCGGACTGGGCATGCTCTATTGCATACTCTTTATGGCCAGGCCATGAAGCATAATACACAGTTTTTTGTGGAATATTTCGCTTTGGATTTACTAATGAACAGTGATGGTATTGTCTTCTACTTAGAAACTCAGTTTTATGTCATATGATTAAATATTAGCCTAGTTTGATATTACTTGACTTGCACTGTATACTTTGAAACTTTGTGGTAGTAATCTAGCATGTCATACTAAAAATTATCCTGTATTTCTTTTGATTTTTTAACATTTTTCTGATATGAATATTTATCAGTATACATGTGGTTGAAGTTATATGGAGATTCATTGGACCTCTTGCTCATTTTTAGCTGTTTCATTCTACTAATCAACTCTTCTCTGTGCTTTAAATAATGTGTCGACATCAGGGAGCTGCCAAGGTGTAATAGCACTAAATATGGAGGATGGTACCTTGCATCGATTCCGTGCTGCCAATACAATTTTGGCCACCGGGGTACTTACTGGTTAACATTGACCTCTACTTAGACCTCTTGAAGTAGTAATGAATTTGTAAGCGTTCTCTTTTATAAATGTTTGGATTAGGGTTATGGCCGAGCTTACTTCTCGGCAACATCTGCTCATACTTGCACTGGAGATGGTAATGCTATGGTTGCGCGTGCTGGGCTTCCTCTTCAGGTCATTCTATAATGACATCTTCTGACCATGTCAATTCCCCCTCCCCCCTTCTATGGTACGTTATTTTAAATAAACTCTGCTATGTCTCTTTGCAGGATCTTGAGTTTGTGCAATTTCATCCAACTGGTATATATGGGGCTGGTTGCCTCATTACTGAAGGTTTGTTTCTTCTTCAATGCTATTAGTGATGGTTATAATTATATTGATTGTCCATTCTTCTGTCAATTGTTCTTCCATTCGTGTTTCCTGATGTACAGTGTTTTTCTTTCCTTTTTGAGAGTGATTTCTTGAGTATAGTATTTAACTTTTCTGTTGACATTCTTGAATTTCTATTTGTAACAAGTGCCTCATTCCATGCTTAGGATCTCGCGGTGAAGGTGGTATCCTGAGGAATAGTGAGGGTGAGCGATTTATGGAAAGGTATGCCCCAACTGCCAAGGATCTTGCCTCAAGAGATGTTGTTTCCAGATCTATGACTATGGAAATTCGAGAAGGGCGTGGTGTAGGTATGATGTCATTAATTTAGCCGAATTAAGAAGTTTATTCTTTTAGCACTCTTGTAAGAGCCCTTGTCTTAAGCTTAAGTCATTGTGGTCTGTGGTGGAGTAAGATTCTATAGGCTTAAAATGCACTGGATGGATATCGACCGCGAAGTTTATGATCTGTCTGTTTAAAGTCATCATGTTACGATGACCATAGTGAAAGTCTGAAATGCGAGACCTTTATCTAATTGGATGTATTATATTCAATTCATCTCTAGCTTCTGTCTGACTTAGACGTCATTGTTATTTTTATTTGTTTAGAGCATAATTATATAGGCATGCATGAGTATACTAACGTGAGTGCTCCTCCAATTTAGAAGCTTGTAAACTTTATCTCTAGACAATATGTTTGATGGTAAGCCACCTAAATCGTAAGGTAATTTTGCTATAAAGTCAACTGCATTTGTAATACAGCAACAATCTCAATTAAATAAATAGCAAATGTTTCAACTCTGCATTGAGATATACTAGTTCATGAGAACTACTCATCGACCAATTTCAATTATTAGTGACAAGTGAAGCTTGTTTGTTGTGAAAACTTTAAGTATCATAACTTCATAAGTGTGTGTGTGTGAGACTGCAAATGACAGTACTTATTCTGAGTATTTTGGATGTTTGTGGCACATGTGTTCAGGATGAACTCCTGCCCTGTTTCCTCCCCTTTTTCTTCCTCCTCTAAAGCAGTTTTCAAACGTCTGATATTATTGTCAAACTTTTGGTAGGACCTTTGAAGGACCATATCTATCTTCACCTCAATCACTTACCTCCAGAGGTTCTTAAGGAGAGACTTCCGGGTATCTCTGAAACAGCTGCCATTTTCGCTGGTGTTGATGTAACTAAGGAACCAATTCCTGTTTTACCTACCGTGCATTATAATATGGGAGGAATCCCAACTAATTACCATGGACAGGTATGAAAAATTAGTTAACGTCTCCCTCTCTGAAAATCTATTTTTCAACTTTTGTTTTTCTTACCTGCTCCATTTTTGAGTCTGAACTCATTTTTTGTATGTTTTGTTTGGAAGGTGGTCACTAAAAACGGGGATGATCCAGATGCTGTGATCCCTGGACTGATGGCTGCTGGTGAAGCAGCATGCGCATCTGTTCATGGTGCCAATCGTCTTGGTGCAAATTCTCTTCTAGATATTGTTGTTTTTGGACGGGCATGTGCTAATAGGGTTGCAGAGATCCAAAAACCAGGTTAGAGAATTTGTTTATATAATTTTTAGGCATGCATAACATGTTTAAGATTTCTGAACTTTCATATCTCCAGGCGCGGAACAAAAGCCACTTGAAAAAGATGCTGGGGAGAGGACCATTGCATGGTTGGACAAGATTAGGAACTCAAATGGTTCATTGCCCACCTCAAAGATAAGGCTGGACATGCAAAGAGTTATGCAAAACAATGCTGCTGTCTTCCGCACACAAGAGACATTAGAGGAAGGTAGGAAGAGGAGGTGTTTTCATATTTTTAAAGTTTATCTATATCATTTTTATTTTTTTTTGCAATAAGTGTCTTGGGAAGGTTTTATTTTTTATTTTCTTTTAAATATTCGGAGACTTTATCAGCTGAGCTGACTATTTTCTCTGTTGCGGTTACAGGTTGCCAGCTCATTGACAAAACATGGGAGAGTTTCCATGATGTTCAGTTGAAGGACAGAGGTTTAATATGGTATTATGGAGGAGATTATGAATCGTTATTAAATATTAGGTCTTCCTTTTCGTCTTGTTGTGTTCCTGAATTTCCTTCTATTTCAAATTCATAGGAACACAGATCTTATAGAGACTATTGAGTTGGAAAATCTTTTAATTAATGCATGCATCACCATGCACTCAGCCGAGGCAAGAAAAGAAAGCAGAGGAGCTCATGCTCGTGAAGATTTTACG</genome_strand>
        <mrna_strand>GTATAAATGCTGCATTAGGCAACATGACAGAAGACGATTGGAGGTGGCACATGTATGATACAGTCAAAGGAAGTGATTGGTTAG....................................................................................................................................................................................................................................................................................................................................................................GTGATCAGGATGCTATCCAATACATGTGTAGAGAAGCTCCAAAAGCAGTTATAGAGCTTGAGAATTATGGTTTGCCTTTCTCTCGAACAGAAGATGGTAAAATATATCAACGTGCATTTGGTGGTCAAAGCCTGGACTTTGGGAAAG............................................................................................................................................................................................GAGGACAAGCATATCGTTGTGCATGCGCTGCAGATCGGACTGGGCATGCTCTATTGCATACTCTTTATGGCCAGGCCATGAAGCATAATACACAGTTTTTTGTGGAATATTTCGCTTTGGATTTACTAATGAACAGTGATG.......................................................................................................................................................................................................................................................................................................GGAGCTGCCAAGGTGTAATAGCACTAAATATGGAGGATGGTACCTTGCATCGATTCCGTGCTGCCAATACAATTTTGGCCACCGGG.........................................................................................GGTTATGGCCGAGCTTACTTCTCGGCAACATCTGCTCATACTTGCACTGGAGATGGTAATGCTATGGTTGCGCGTGCTGGGCTTCCTCTTCAG...............................................................................................GATCTTGAGTTTGTGCAATTTCATCCAACTGGTATATATGGGGCTGGTTGCCTCATTACTGAAG...........................................................................................................................................................................................................GATCTCGCGGTGAAGGTGGTATCCTGAGGAATAGTGAGGGTGAGCGATTTATGGAAAGGTATGCCCCAACTGCCAAGGATCTTGCCTCAAGAGATGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCATGATGTTCAGTTGAAGGACAGAGGTTTAATATG..............................................................................................GAACACAGATCTTATAGAGACTATTGAGTTGGAAAATCTTTT-ATTAATGCATGCATCACCATGCACTCAGCCGAGGCAAGAAAAGAAAGCAGAGGAGCTCATGCTCGTGAAGATTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567839" ref_strand="+" ref_description="SGN-U567839 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|119224824|dbj|BAF41219.1| (e_value=0) cytochrome; (*ATH) AT3G50660.1 (e_value=0) | Symbol: None | steroid 22-alpha-hydroxylase (CYP90B1) (DWF4), identical to gi:2935342 | chr3:18825122-18828214 REVERSE | Aliases: T3A5.40; (*SWP) sp|O64989|C90B1_ARATH (e_value=0) Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CYP90B1; ">
      <seq>gcttcagaaacagagcttattgagtgttgaaactgaaaaagaagaagaaagaaatagagaagaaggaataacatcaatgtctgacttagagttttttctttttcttattcctccaatcttagcagtacttataattcttaatctattcaaaagaaaacacaactttcaaaatcttccaccaggggatatgggttggccttttcttggtgaaactattggttatttgagaccttattcagctactactattggagatttcatgcaagatcatatttctaggtatgggaaaattttcaagtcaaatttgtttggagagccaacaatagtttcagcagatgcagggctaaacagatacattctgcagaatgaagggagattatttgagtgtaattatccaagaagtataggtgggatacttggtaaatggtctatgttagttcaagttggacaaatgcatagagatatgaggatgatttctctgaattttttgagcaatgctaggctaaggaatcaacttttaagtgaagttgaaaagcatactttgcttgttcttggctcttggaaacaggattctgttgtttgtgcacaagatgaagcaaagaagttaacattcaactttatggcagagcatatcatgagtctacaacctggaaatccagagacagagaagctgaaaaaagagtacatcacatttatgaaaggagtggtttctgctccattgaattttccaggaacagcttacagaaaggccttacagtctcgatcaacaattcttggatttattgagagaaaaatggaggagaggcttaaggaaatgaacagaaacgaaaacgaccttctaggttgggttctgaagaattcaaatctctcaaaagagcaaattcttgatttgctactgagtttgctctttgctggccatgaaacttcatcagtagcaatagctctgtctattttcttactcgaaagctgtcctgctgctgttcaacaattaacagaagagcacttggagatttcccgggcaaaaaaacagtcaggagaaacagaattaaattgggatgactacaagaaaatggaattcacccaatgtgttattaatgagactctaagacttgggaatgtagtgaggtttctgcacaggaaagctgtgaaagatgttcgatataaaggttatgatattccatgtggatggaaagtgttgccggtgatttcagcagcgcatttagatccttcacttttcgaccgacctcacgactttgatccttggagatggcagaacgcagaagagtcgccttcaggtaaaggaggaagcacaggcacaagcagcacaacaaaaagtagtaataatttcatgccatttgggggaggtccacgtctatgtgcaggatctgaactggccaaacttgagatggccattttcattcactatcttgttcttaattttcactggaaattagctgcaactgatcaggcttttgcctatccttacgtagattttcccaatgccctacctatcaatatccaacatcgatcgttaaataaattacatgactagccctaattcatcgtattagaatctacgttcgctcgcacatcgcatcgtctatgggtaaacattttattatattgtataaataaaaaatggtagctgaacaaatgggaaagaggatggtacttgaaatgattcaaaccaaaagagatgttttgtaaatctagctaattatctaggaggtgaagcagctgctacagtttttgttctctcttttttttttttgctttatctcttctcttgtttttttttttcttttttctttccgttacgtagtacataattttctatgtaattaaatacagcgaaattattcgattctccgtttttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="46913" stop="41803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46613" g_stop="46335" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46334" i_stop="46269" i_length="66">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46268" g_stop="45944" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="604" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45943" i_stop="45658" i_length="286">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45657" g_stop="45505" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="757" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45504" i_stop="45400" i_length="105">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45399" g_stop="45163" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="994" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45162" i_stop="45077" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45076" g_stop="44984" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="995" r_stop="1087" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44983" i_stop="44813" i_length="171">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44812" g_stop="44734" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1166" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44733" i_stop="44623" i_length="111">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44622" g_stop="44516" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1167" r_stop="1273" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44515" i_stop="42709" i_length="1807">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42708" g_stop="42103" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1274" r_stop="1880" r_length="607" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U567839" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1879</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46613" e_stop="46335"/>
          <exon e_start="46268" e_stop="45944"/>
          <exon e_start="45657" e_stop="45505"/>
          <exon e_start="45399" e_stop="45163"/>
          <exon e_start="45076" e_stop="44984"/>
          <exon e_start="44812" e_stop="44734"/>
          <exon e_start="44622" e_stop="44516"/>
          <exon e_start="42708" e_stop="42103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAAACAGAGCTTATTGAGTGTTGAAACTGAAAAAGAAGAAGAAAGAAATAGAGAAGAAGGAATAACATCAATGTCTGACTTAGAGTTTTTTCTTTTTCTTATTCCTCCAATCTTAGCAGTACTTATAATTCTTAATCTATTCAAAAGAAAACACAACTTTCAAAATCTTCCACCAGGGGATATGGGTTGGCCTTTTCTTGGTGAAACTATTGGTTATTTGAGACCTTATTCAGCTACTACTATTGGAGATTTCATGCAAGATCATATTTCTAGGTAAATCCCTTTTTTATTTGTGTGTTTGTTGAATTTTTGTACTGAAAAAATTGGATCTTTTTTCAGGTATGGGAAAATTTTCAAGTCAAATTTGTTTGGAGAGCCAACAATAGTTTCAGCAGATGCAGGGCTAAACAGATACATTCTGCAGAATGAAGGGAGATTATTTGAGTGTAATTATCCAAGAAGTATAGGTGGGATACTTGGTAAATGGTCTATGTTAGTTCAAGTTGGACAAATGCATAGAGATATGAGGATGATTTCTCTGAATTTTTTGAGCAATGCTAGGCTAAGGAATCAACTTTTAAGTGAAGTTGAAAAGCATACTTTGCTTGTTCTTGGCTCTTGGAAACAGGATTCTGTTGTTTGTGCACAAGATGAAGCAAAGAAGGTGAATAAGTGGCTTCGCACTATTTTGTTGTAGTTATTGATCGTATTTTTTCTTCTTTTTTCAATGTATTTTATCATGATTTTTGCACTTCCATAATTTCCTTAAGGTGAGTGTAAAACACTCTACCTTTCAAGGTAGGGTAAGGTTTACACGTTCAATGTACTCTTTCAGACCTCGTTCAATGTACTCTTTCAGACCTCATTTGTATGATTACACTGAGTATGTTATTATTGATGCTACTCTAACTTTGGAAATTGTTGTTGTTTTGTGTGTGAAATTTCTACAGTTAACATTCAACTTTATGGCAGAGCATATCATGAGTCTACAACCTGGAAATCCAGAGACAGAGAAGCTGAAAAAAGAGTACATCACATTTATGAAAGGAGTGGTTTCTGCTCCATTGAATTTTCCAGGAACAGCTTACAGAAAGGCCTTACAGGTACCATTATAAATCACTAGGACATGAACGTGCTTACCATCTGAACAACCCCTTTTACTTGTTCACTTATTTTCAAGTTACGAATTATTTTTCTCTTTTCAACAGTCTCGATCAACAATTCTTGGATTTATTGAGAGAAAAATGGAGGAGAGGCTTAAGGAAATGAACAGAAACGAAAACGACCTTCTAGGTTGGGTTCTGAAGAATTCAAATCTCTCAAAAGAGCAAATTCTTGATTTGCTACTGAGTTTGCTCTTTGCTGGCCATGAAACTTCATCAGTAGCAATAGCTCTGTCTATTTTCTTACTCGAAAGCTGTCCTGCTGCTGTTCAACAATTAACAGTAAGTTCAAATAATCAAACACTTTTATAGAATTTTCTTCTAGTCCACTCTTTAATATTTTTTCAACTTGTTGGTAATAAATTTAGGAAGAGCACTTGGAGATTTCCCGGGCAAAAAAACAGTCAGGAGAAACAGAATTAAATTGGGATGACTACAAGAAAATGGAATTCACCCAATGTGTAAGTTTATACTCTTTAGCTCTTATCAACTCATTTAAAAGATAACTGTTCGTACACAAAGTACAATTGTTTTGTTACATGTTACACACACATTAATAGTGTGAAAACTCTATATACATTGATAGTAACACATATGTAATGCTAAATTATTATTTTTTCCTTCACTTGCAGGTTATTAATGAGACTCTAAGACTTGGGAATGTAGTGAGGTTTCTGCACAGGAAAGCTGTGAAAGATGTTCGATATAAAGGTATTATTGTATGATGATGCATGGCTTCAGCTTTAAAATCTGATTTGTTTTTGCCTTTTTAACAATCTTTTTGTTATTGTTCTGTTTTTCAACTTGAAAACTCAAAAAAAGGTTATGATATTCCATGTGGATGGAAAGTGTTGCCGGTGATTTCAGCAGCGCATTTAGATCCTTCACTTTTCGACCGACCTCACGACTTTGATCCTTGGAGATGGCAGGTTAGTCAATTTGTGCATTTAAACCGACACTCAATTTAGTGTACAAAGCATCCCACGTTATTAAGGTCTTTAACTCAACTACTCTAGTGTGTGATGTATATCCAAATACAAGTATTGGTAAAAGCTTTCACGATTCAAAGTCGTAATCTATAAATCACACAAAGATAATTTTATTATTGTTCCAAGAGTTCATCCAATTTTAAAAATCTTTCATAGATAAATGTAAGTAGTAAACTAAACCTTGCAACTTTATGAGAAGAGCTAAAGGAAAGTTAAATTTGAAAGCAAAAAGTAGTTTTTAATGCATCCACCAATTTTAGTCGTCTTACGTCGTGGGATCATGTGATGAAAAATTGAAAGGAACGCACACCTCTAATTTTAAGAACCAAATATGTGCTTCAGCTTTAAGATTGGAATGTACTTATTAAGCTACGTTACGGGGATAATATTTTCCCAAAAGAGAAAACAATAATTTAATGGATAAGGGAGTGAATTAAGACTAGGTTGGGGAGAGTGGAAAAGAACATTCTATGTAGGCCGTTTGTTGAGTCGCATGATAGAACATATAAAATATCATCAATTAAAAGCAAGGTGGGATTTAGCCATCTTGGTAATCATAATAATCCATAGAAATGAACTGTCACAATCAATTCATGCACATATGCTGCTGCATTATGCACGAAGTAAAACCACACCTTAAGCTTAAAGATGTGAATTGGGTGCAAATAATATAAGCAAGGAATAAATATGGTGGGACGGACGAAATTCTCTTTTCTTTAGTTAGAGATTTTGAGTTCAAGTGTTCAGTTGGAATAGATGTGAAGAGTAATTAGTGTTCGGTTCATAGGAATGATCATTTTCAAACCTTGTGTATGTAATTAATATAATAAGTATAAACATTTGATTTAAAACTCATATCAATTGAGTCAGTAGTAAAATCCTTTAATTGAACCAATAAAGCTCACTCTTGAATTCTCCTATGGTTCTAGGACAATGACTTTAATACGTATATATTGGATGACTTCTTATTTTAGTTATTTTCTTGAGAAAAAAAATTGTCTCCATTTGAAGCAATCATTATAATAGCACTCTTTGAAATGCAATCTTTATGTTAATGTAATATGCTTTTTAGATTGAATTATCTTCTCTCTTTTTTTCGTATTTATCTTCTATCTATATAATATATTCCAACCAAAAACTAGTCCAAAGTCCTAATAGGGGAGGACCCAATCAAGGTAATTACACAATTAAAAGACTTGTCCAAACCCAACCCGCATGTGGGTGGTGGGGTTTTCATGTGCACGTGCACCTGTGCTTTTCATGGTGGCTCACCTCCACTCTACTCCATGCTGGTCCATCCATTTCCCATTCTATCCTCTGTCTTGGGGCCACAATTACATGTTATTTTAATTCCTATTTGTCAAAAATATTCAAAGTGCATTTACTGCTTTCAGCACCACTACTTGTTCCTCAATGCAGATACTCACTTATGCAATTTTCATTTTCTTCTGAAATCTAAACTTAATTATCGAATGGGAAGTACTGTACCGCACAGTGTGAAATGCATTGATAATGTCGGCAATATAGTTGAGAGGAACAAATGATACTTTATGTTTTACCATTTAAAGGGTATGAAGGATGTCAAAAAAAAGTATTTTTGTCATTTTCATTGCTTTATTCCAAATAACAAAATCTCGAGCAACTTATTGGGTACTAATAGTTAATTGAATTTGTTGTCTTTGGTTCATCGTACCAAAATGACACCTTAGATTTAAATTTAAAAGTGATGAGTAGTGTATTAATGCAGAACGCAGAAGAGTCGCCTTCAGGTAAAGGAGGAAGCACAGGCACAAGCAGCACAACAAAAAGTAGTAATAATTTCATGCCATTTGGGGGAGGTCCACGTCTATGTGCAGGATCTGAACTGGCCAAACTTGAGATGGCCATTTTCATTCACTATCTTGTTCTTAATTTTCACTGGAAATTAGCTGCAACTGATCAGGCTTTTGCCTATCCTTACGTAGATTTTCCCAATGCCCTACCTATCAATATCCAACATCGATCGTTAAATAAATTACATGACTAGCCCTAATTCATCGTATTAGAATCTACGTTCGCTCGCACATCGCATCGTCTATGGGTAAACATTTTATTATATTGTATAAATAAAAAATGGTAGCTGAACAAATGGGAAAGAGGATGGTACTTGAAATGATTCAAACCAAAAGAGATGTTTTGTAAATCTAGCTAATTATCTAGGAGGTGAAGCAGCTGCTACAGTTTTTGTTCTCTCTTTTTTTTTTTTGCTTTATCTCTTCTCTTG-TTTTTTTTTTCTTTTTTCTTTCCGTTACGTAGTACATAATTTTCTATGTAATTAAATACAGCGAAATTATTCGATTCTCCGTTTTTACTT</genome_strand>
        <mrna_strand>GCTTCAGAAACAGAGCTTATTGAGTGTTGAAACTGAAAAAGAAGAAGAAAGAAATAGAGAAGAAGGAATAACATCAATGTCTGACTTAGAGTTTTTTCTTTTTCTTATTCCTCCAATCTTAGCAGTACTTATAATTCTTAATCTATTCAAAAGAAAACACAACTTTCAAAATCTTCCACCAGGGGATATGGGTTGGCCTTTTCTTGGTGAAACTATTGGTTATTTGAGACCTTATTCAGCTACTACTATTGGAGATTTCATGCAAGATCATATTTCTAG..................................................................GTATGGGAAAATTTTCAAGTCAAATTTGTTTGGAGAGCCAACAATAGTTTCAGCAGATGCAGGGCTAAACAGATACATTCTGCAGAATGAAGGGAGATTATTTGAGTGTAATTATCCAAGAAGTATAGGTGGGATACTTGGTAAATGGTCTATGTTAGTTCAAGTTGGACAAATGCATAGAGATATGAGGATGATTTCTCTGAATTTTTTGAGCAATGCTAGGCTAAGGAATCAACTTTTAAGTGAAGTTGAAAAGCATACTTTGCTTGTTCTTGGCTCTTGGAAACAGGATTCTGTTGTTTGTGCACAAGATGAAGCAAAGAAG..............................................................................................................................................................................................................................................................................................TTAACATTCAACTTTATGGCAGAGCATATCATGAGTCTACAACCTGGAAATCCAGAGACAGAGAAGCTGAAAAAAGAGTACATCACATTTATGAAAGGAGTGGTTTCTGCTCCATTGAATTTTCCAGGAACAGCTTACAGAAAGGCCTTACAG.........................................................................................................TCTCGATCAACAATTCTTGGATTTATTGAGAGAAAAATGGAGGAGAGGCTTAAGGAAATGAACAGAAACGAAAACGACCTTCTAGGTTGGGTTCTGAAGAATTCAAATCTCTCAAAAGAGCAAATTCTTGATTTGCTACTGAGTTTGCTCTTTGCTGGCCATGAAACTTCATCAGTAGCAATAGCTCTGTCTATTTTCTTACTCGAAAGCTGTCCTGCTGCTGTTCAACAATTAACA......................................................................................GAAGAGCACTTGGAGATTTCCCGGGCAAAAAAACAGTCAGGAGAAACAGAATTAAATTGGGATGACTACAAGAAAATGGAATTCACCCAATGT...........................................................................................................................................................................GTTATTAATGAGACTCTAAGACTTGGGAATGTAGTGAGGTTTCTGCACAGGAAAGCTGTGAAAGATGTTCGATATAAAG...............................................................................................................GTTATGATATTCCATGTGGATGGAAAGTGTTGCCGGTGATTTCAGCAGCGCATTTAGATCCTTCACTTTTCGACCGACCTCACGACTTTGATCCTTGGAGATGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGAAGAGTCGCCTTCAGGTAAAGGAGGAAGCACAGGCACAAGCAGCACAACAAAAAGTAGTAATAATTTCATGCCATTTGGGGGAGGTCCACGTCTATGTGCAGGATCTGAACTGGCCAAACTTGAGATGGCCATTTTCATTCACTATCTTGTTCTTAATTTTCACTGGAAATTAGCTGCAACTGATCAGGCTTTTGCCTATCCTTACGTAGATTTTCCCAATGCCCTACCTATCAATATCCAACATCGATCGTTAAATAAATTACATGACTAGCCCTAATTCATCGTATTAGAATCTACGTTCGCTCGCACATCGCATCGTCTATGGGTAAACATTTTATTATATTGTATAAATAAAAAATGGTAGCTGAACAAATGGGAAAGAGGATGGTACTTGAAATGATTCAAACCAAAAGAGATGTTTTGTAAATCTAGCTAATTATCTAGGAGGTGAAGCAGCTGCTACAGTTTTTGTTCTCTCTTTTTTTTTTTTGCTTTATCTCTTCTCTTGTTTTTTTTTTTCTTTTTTCTTTCCGTTACGTAGTACATAATTTTCTATGTAATTAAATACAGCGAAATTATTCGATTCTCCGTTTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574325" ref_strand="+" ref_description="SGN-U574325 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|115454529|ref|NP_001050865.1| (e_value=8e-15) Os03g0669600; (*ATH) AT1G76185.1 (e_value=1e-12) | Symbol: None | expressed protein | chr1:28595219-28596412 FORWARD | Aliases: None; ">
      <seq>aatttgtttctcttaataaaatagcatactgtattaacaaaatcttctatcttatttcgtctaactgtgtactggggtcatgcgaatccctctcagtttagcattttcttcttcgttttccttttgcgttggaccagtgtaacagcttattcggagggatcgtttcttcaattgctaatctaccaatacctaggtgtagttcgttgcttctgaatttgcaattggtattgaaggcaaaaattaattgagatcggagaatcaggttttcgatcgttttggttaacatgataacaaggtctaaactggttgagcagctcagagattatcagatccgatctcaacacaagtgccctcctcttactttcttttcaccaaagctttatctctccaactgggctgatgttgcagttgctttattctgcgccttgttatttggtgtgcttatattatcatcatatgtggccctttatttacgacattactggagttcctttctcattataagccttgccattacccttccagtgcgtctgagaatgttacgacaggctcatgcaagaaagaaagtaagacagttacctttgtctatgtgaacttccttctacttctggaagcaccaaacagtggtttaagtgaaaggaataccttttgcacaaaagtgctctccaattgtagtaatacagttctttgatcttcgtcacataggctgaccaatcttctgctgtgaaagatgggacacacccttcatattactcttgatgactcattcattaagaaacaggatttagacgatcaattagcttcctatgaaatgaacaaccagagctcaaggtttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="65468" stop="58803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65168" g_stop="64775" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64774" i_stop="59548" i_length="5227">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59547" g_stop="59103" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="839" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U574325" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65168" e_stop="64775"/>
          <exon e_start="59547" e_stop="59103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTTTCTCTTAATAAAATAGCATACTGTATTAAAAAAATCTTCTATCTTATTTCGTCTAACTGTGTACTGGGGTCATGCGAATCCCTCTCAGTTTAGCATTTTCTTCTTCGTTTTCCTTTTGCGTTGGACCAGTGTAACAGCTTATTCGGAGGGATCGTTTCTTCAATTGCTAATCTACCAATACCTAGGTGTAGTTCGTTGCTTCTGAATTTGCAATTGGTATTGAAGGCAAAAATTAATTGAGATCGGAGAATCAGGTTTTCGATCGTTTTGGTTAACATGATAACAAGGTCTAAACTGGTTGAGCAGCTCAGAGATTATCAGATCCGATCTCAACACAAGTGCCCTCCTCTTACTTTCTTTTCACCAAAGCTTTATCTCTCCAACTGGTACGTCTCCATATTTCTCTCTGTAAATGTATTTATCCCTGCACATAGTAATATCAAGTTTAACAAATTTAGCAGGGAGAAGTTTCTGTTTAGACTTTTATGCTTTTTTTTTTTTATTTAGTTCAATTTATTTGTGTATACCTGAGCTATTTGTACAAAAAAAAACTGATTTTGTGATATTTAATTGTTCGCATTACCTGCCACCAGCAGGAATTTTGGCATGTTTGTAGTCCGATGAGTAGAAATCACTGAGCTATTTTTGTTATTTAACCGTGGTTTTTACTTACTTCATTAACAACTAAGCTACACCTTGTGTGCATTATTTTGAATTTATGAATATGTGATTTGGTAAACTACTTCAGTTATAGATATTTAAGCAGTTCAACTAGAATGTCATAGTTCAATTTATACAAACGATGAATCTAAAGCGTCTGCTGAGGCGTAAAGCCAACCAGCTTTGAATTGCAAAGGCAAAGCGTCTGCTGAGGCATAAAGCCAACCAGCTTTGAATTGCAAAGGCAGTGGACATGGACTCACTAATTCCAAAAAAATTATGATCTGCAATGATTTTGGCTAGACTGAAAGCCACCTTGGGTACAAATTGCTAAGGCATTCTACAAAATAAGAATCTGATCTATCCTGATTTTTTTGATAATTGAGATAATCCTCATACCAATGATACATAATTTGAAACACAGTGAATAATGGGTTTGTTCTTTTATCATTCTCCACTTAATTATCAAGTTATTATTTTTGGCAAGGTTCGAACCTGTGACATATGTATAACCTACACCAGCATTACACTAACAACTAGATCAAAGCCCTAGGGGGCAATTCTCTCCAGATATTTCTCCATCTGTTGAAGTTATTAAAGAGTAACTTTTTGTCTTTCTTTTATCTTGCAATTATTTTATGGTGGAGGAGGAGTCTTGGGTCTTTACTAAGTTTATTGTGGCGACATTCTCTTCTGATGTGGTCACCCAAATTCTGATCACCTTCCTTAAAACTGTGCTACCTCTGCTCTTCCAATATCTTCTTGATTACCAAGTAGCATCTGCTGCTCAGATCCGTTTTCAACCATAAAGCTTGAATGTAGTTTACTGACTTATTCTCCTTTATGGATCTCTCCACGTGATGAGTTCCACCAATACGATTTCTCCCCATAAAGAGGAAATGATTTTTGCATGATCTGGTACTCAAGCTTCTGAATTCACCAAAATTTTTGTCAGTTCAATTTTAGTGGGTTAATCACCTGAAGTTCATGGAATAAATCTATCTTATAAATTAATCCTTGTTGTTTTCTGGTCCATATAATTCTGCTTGGTATATGGTAAAGGAATGTCGGTTTTTGGCCCAATATGTGAAACCTGTTAGTTTGTTGGGCATTGTTAAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGTTCTAAGGGAGGAGAATCGCCCAGGCCTTATAAGGATTCACTTATCTTATTAACCGCAAATGTGGAACTTTTGTCATTCTTTATCACCCAACCTCATGCCCATGCTTAGCATTTGGTGCGTGGGCAATTTTGATTTTGGGGGTCCCAACATTTGGTGAGATGAGTCCTGCTCTGATACCACGTTAAAGTGTGTGACCATCTCATTTAAAAGCTTAAGTGGTTAGATTGAGCATACTTTTATTATTTAATTATATTCTTAACCGGCATCAATAGGAATGGTCGCACTTGTTCTAATTTGATTATTTGAACCTGTAAATGATTGTCAGTTTCCTTTCACACAGCTTTCTTTCATCCTTTCCCATTTGGTCACATCTCTTCCATCCATCTCAGAGATATTTGAACAGGCAAAGAGATACTCTTACACTGAAGAATGCTCCACCCATCTTCTCATTGATGTAGATCATCCCCGCGAATAATATTCTCTGCTAGTTCTGGTCACTGCTCTCCTTTCTTACCTTGCCAGAATCCTTTAAGTTGAACCTACTCTGAGGGAGTTGTTCTTAACGAGTGTTAATGATTTATCCAATACCCGTCCATCTTTCATCCTAGCCTTCTCAGTATCTCAATTCTTCAGAACTTTCCCCCTCTGTCAACTTAAGCCAAGTTGAAACACCTTTTTCATTTAAAGCTTGACCCATCAAAACCCCATCTCTCTCTGTAGTGTTTTATTGCCATAGTTATTTTTGCAAATTTACTAAGCTCTGGCTCCCGAACCAATAGAAACTCATTGTATTTCTTTCTACATATATTTCAAATATCCATTACTTCTACCGAGAGAAGAAACCTCATCCTTAAATACAGACCACCTTTCCTGGATAGGTCTTCCTCTCTATTTTCTGAGATTCCTCGAAGCCCTTGTTGCCTCTGAGTACCACTTCTTTGAAGCTTCCTTTTTTCTCACATATATCCATGCTATTAGTTGACCTATGCCTGTTTGAACAGCCTCGGTTAATTGTTACTGAAATGCCGTTTAGTTGGCTTATGTCTGTTTGAACAACCTCGGTTAATCTTACCTCTTTTTGTTCTCCCAATTGAGTAGAATTGAAATATCACCTCTCCTTTTTTCGTCTGTGAATGTCAATCACTGCACCTTCATCTTCTGATTGTCTAGAACTTTAGATTTCCTATAAGTATATCACTATAGCATCGTGTTCATGTTGGTTATTTAATGTAATTAAGCTTCCATGTCAAATACTTAATATTTTCGCCTTTCCATGTTTAGTTCTTTCTTTATTTTTTTTGGAATGGGCTTGGAGGGAAGCTGTAAGGCTATAGCATCACTCATCGATAATTTTGAGTGTACATTTGGTAATTTTAGAATATCAAACTCCTAATTTTTTCTAAAAATTGTCAAATCAGGACACAAATCCCTCCTTAAATTTTGCAACGGATCATGTGTTGTATCTTGAACAGTATAATGGAATATGGTACAGAGTAATACACATATTTTCAAATAACTGATTACTGTTTATGGATAACTCATCAACATTATGCCAGAAATTGCACCCAAGGTGTTGCCTAGTGGTCAATGAAGTGAGAAGAGAACCATGAGGTCTCAAGTTCAAATCCTAGCGGAGATAAAAAGACTTGGGGGTTTCTTCCCATTTGCCTAAGCCTTTGAGGCAAAATTATCTGGTACCTATGCTGGTGGGAGATAACAGGTGCCCAATGGAATAATTAAGGCACAAGCAAGCAGGCTCGGACACCACGATTATTTTAAAAAGAAGTATGCTGGAAATTGCTTTTTTTGTTTTGCATGTGAATAATTTAGAGAACGCCACAGATGCACCAATATCTCCAGTACACATGTTACGTAGATACTCAACCAACTGCCATTCAACTTCAGACAAATTCCGATCTAAACACACAAACAAATGCAAATCAACAAAATCCAATCTATATATATACCCACGTACAAAAGGTAAACAAAACTTCATCTGGATATAATCTCTTCCCCAATAGACAACCCCCTGTTAGCTCCTTTCCTTTGTTACCTGACATTACATTCCATCTATCATAGATGATTTTTCTGTGTCATTCTCTCTTTATAGGTGATTTTCTTATACTTAGTTGCTATCTTTTTACTGGCCCTTCTCAAATTGCATCATTATTTGCTTAGTCTGACTCCCATAGGATGCCTGGAAATTCCTTGACTGATCCCCATGAAAGTGAAACACCTAAAAGTTCCCTAGATTCTTATTACTTTGACATTCTTATCTGAACCGTCCTGGTTCATCAACACTTTGATTTCATTTACTATTTTTACGCATAATCTCTGTTATAAAAGATTGACTCATTTGCCTTGTTGATCTTTGTTGGTTCTGTTTCAAGATATCACTTTTCTTCTTCATTGTTGGTCTCCTAGCATGAAAATTACTCTCCTCATCTCCTAGAATGTCCCTCTCCGAGATCATTTAGGTAGGTATCTGCTGCAATCTCGCATGTTGCGTTAATTCTCCAATATCAGATGTTTCCCCTGTCTGATTTACTTATTCTCTTTGTGCATCAAATACCATAATCCTCTTTCCCGAATGACAAGAATGGATATGTAGCATTAAAGGCTCATATCTAGCATATTAGAGCATAAGTATTGCATTTTGTAAGTTACTCTTATTCTCAGTTTGACTTGCTTTCATCTGCTCTCTCCATTTCAAATGTGGAGTACCGTTTGACTTGGTCGCTTATAAGAGAAAATACTAGATGCTTAATATCTGTCGAGGAAACATCTTGGACTGTGATATGATTAATGTATTTTTAAGGTGAAAATAGAAAAAGCAAACGTATTGAAAAGTGTTGAGTGGATCCACCAGAAACAAAGTTGTAGTATACATAATGAAAAAATTTAAAGAGAAATAGTTTGATAAATTACTATTTCAGATACAAAATTTTGCTGGAAGATTATGAGAGTATTGTATATTAATAGTGGTGGAACTTGTAAAAGGAACATTTAGTTGCTCCATCAATCACAATTTATATCGTATTTCATGTGTTCTCAAGGAGTAAGCTGTAAAAGGAGTAGATGTCCTGAATGATATTACAGGTTCATTCTGTAAAAATTAAATTTGGCGTTAGAATTGCAGAAAGTGAACACCATTGAAACGGCAATAAAAGTAGACTAATTATTTTTAGAATCACAATATCAGATGTTGATAAAATATTATAAACAACTTTTTGTTACTCCCTCCATATACTATATTACGTAGTAATGTTTGACTTGGTACAAAATTAAAATGTTTGTTTACAATTTGTGTTATATTAGATGTAGTGGAAGTAACTACTAAAAGAGTTTAAGAAGTTATTTTAGAGAGATAAAATTTAACTTGTTGAAAGTTGTATAGTATAATATTTTTAGTGTAATGGCTCAAACATTTTAGGACGTTGTGAAAGGGATGGTTGTCATAAAATTGGGACAAACTCCTTTGTTAATGGTATGTCAGGCAATTGCACTTGTAAATGGATGCAGTGCTAGTAGTAGTATATTAGCTCATCATCTGTTATGTGTAACTTGAAAATTTCTTTTCTCGTATATTTACGAGCTTGGATGCGCAAGATCTGAATCTACTCACACACTCAAACTAAATTACCCTCTGTTTTGCACCTTCAGTTATGCCTTGTCATTAGAATAATATTTACATGATGCAATCTTCATTCCACAAGTTTATAATCTAAACAGTTTTGGGAGACCTGTGCATTTGTTAATAGTGTTCCAAATTTGTAATTGTCTCAATTTTTATGTAGGGCTGATGTTGCAGTTGCTTTATTCTGCGCCTTGTTATTTGGTGTGCTTATATTATCATCATATGTGGCCCTTTATTTACGACATTACTGGAGTTCCTTTCTCATTATAAGCCTTGCCATTACCCTTCCAGTGCGTCTGAGAATGTTACGACAGGCTCATGCAAGAAAGAAAGTAAGACAGTTACCTTTGTCTATGTGAACTTCCTTCTACTTCTGGAAGCACCAAACAGTGGTTTAAGTGAAAGGAATACCTTTTGCACAAAAGTGCTCTCCAATTGTAGTAATACAGTTCTTTGATCTTCGTCACATAGGCTGACCAATCTTCTGCTGTGAAAGATGGGACACACCCTTCATATTACTCTTGATGACTCATTCATTAAGAAACAGGATTTAGACGATCAATTAGCTCCCTATGAAATGAACAACCAGAGCTCAAGGTTTCAGC</genome_strand>
        <mrna_strand>AATTTGTTTCTCTTAATAAAATAGCATACTGTATTAACAAAATCTTCTATCTTATTTCGTCTAACTGTGTACTGGGGTCATGCGAATCCCTCTCAGTTTAGCATTTTCTTCTTCGTTTTCCTTTTGCGTTGGACCAGTGTAACAGCTTATTCGGAGGGATCGTTTCTTCAATTGCTAATCTACCAATACCTAGGTGTAGTTCGTTGCTTCTGAATTTGCAATTGGTATTGAAGGCAAAAATTAATTGAGATCGGAGAATCAGGTTTTCGATCGTTTTGGTTAACATGATAACAAGGTCTAAACTGGTTGAGCAGCTCAGAGATTATCAGATCCGATCTCAACACAAGTGCCCTCCTCTTACTTTCTTTTCACCAAAGCTTTATCTCTCCAACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGATGTTGCAGTTGCTTTATTCTGCGCCTTGTTATTTGGTGTGCTTATATTATCATCATATGTGGCCCTTTATTTACGACATTACTGGAGTTCCTTTCTCATTATAAGCCTTGCCATTACCCTTCCAGTGCGTCTGAGAATGTTACGACAGGCTCATGCAAGAAAGAAAGTAAGACAGTTACCTTTGTCTATGTGAACTTCCTTCTACTTCTGGAAGCACCAAACAGTGGTTTAAGTGAAAGGAATACCTTTTGCACAAAAGTGCTCTCCAATTGTAGTAATACAGTTCTTTGATCTTCGTCACATAGGCTGACCAATCTTCTGCTGTGAAAGATGGGACACACCCTTCATATTACTCTTGATGACTCATTCATTAAGAAACAGGATTTAGACGATCAATTAGCTTCCTATGAAATGAACAACCAGAGCTCAAGGTTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596222" ref_strand="+" ref_description="SGN-U596222 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gtttcttcaattgctaatctaccaatacctaggtgtagttcgttgcttctgaatttgcaattggtattgaaggcaaaaattaattgagatcggagaatcaggttttcgatcgttttggttaacatgataacaaggtctaaactggttgagcagctcagagattatcagatccgatctcaacacaagtgccctcctcttactttcttttcaccaaagctttatctctccaactgaaattgcacccaaggtgttgcctagtggtcaatgaagtgagaagagaaccatgaggtctcaagttcaaatcctagcggagataaaaagacttgggggtttcttcccatttgcctaagcctttgaggcaaaattatctggtacctatgctggtgggagataacaggtgcccaatggaataattaaggcacaagcaagcaggctcggacaccacgattattttaaaaagaagtatgctggaaattgctttttttgttttgcatgtgaataatttagagaacgccacagatgcaccaatatctccagtacacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="65307" stop="61176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65007" g_stop="64775" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64774" i_stop="61789" i_length="2986">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61788" g_stop="61476" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="546" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U596222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65007" e_stop="64775"/>
          <exon e_start="61788" e_stop="61476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCAATTGCTAATCTACCAATACCTAGGTGTAGTTCGTTGCTTCTGAATTTGCAATTGGTATTGAAGGCAAAAATTAATTGAGATCGGAGAATCAGGTTTTCGATCGTTTTGGTTAACATGATAACAAGGTCTAAACTGGTTGAGCAGCTCAGAGATTATCAGATCCGATCTCAACACAAGTGCCCTCCTCTTACTTTCTTTTCACCAAAGCTTTATCTCTCCAACTGGTACGTCTCCATATTTCTCTCTGTAAATGTATTTATCCCTGCACATAGTAATATCAAGTTTAACAAATTTAGCAGGGAGAAGTTTCTGTTTAGACTTTTATGCTTTTTTTTTTTTATTTAGTTCAATTTATTTGTGTATACCTGAGCTATTTGTACAAAAAAAAACTGATTTTGTGATATTTAATTGTTCGCATTACCTGCCACCAGCAGGAATTTTGGCATGTTTGTAGTCCGATGAGTAGAAATCACTGAGCTATTTTTGTTATTTAACCGTGGTTTTTACTTACTTCATTAACAACTAAGCTACACCTTGTGTGCATTATTTTGAATTTATGAATATGTGATTTGGTAAACTACTTCAGTTATAGATATTTAAGCAGTTCAACTAGAATGTCATAGTTCAATTTATACAAACGATGAATCTAAAGCGTCTGCTGAGGCGTAAAGCCAACCAGCTTTGAATTGCAAAGGCAAAGCGTCTGCTGAGGCATAAAGCCAACCAGCTTTGAATTGCAAAGGCAGTGGACATGGACTCACTAATTCCAAAAAAATTATGATCTGCAATGATTTTGGCTAGACTGAAAGCCACCTTGGGTACAAATTGCTAAGGCATTCTACAAAATAAGAATCTGATCTATCCTGATTTTTTTGATAATTGAGATAATCCTCATACCAATGATACATAATTTGAAACACAGTGAATAATGGGTTTGTTCTTTTATCATTCTCCACTTAATTATCAAGTTATTATTTTTGGCAAGGTTCGAACCTGTGACATATGTATAACCTACACCAGCATTACACTAACAACTAGATCAAAGCCCTAGGGGGCAATTCTCTCCAGATATTTCTCCATCTGTTGAAGTTATTAAAGAGTAACTTTTTGTCTTTCTTTTATCTTGCAATTATTTTATGGTGGAGGAGGAGTCTTGGGTCTTTACTAAGTTTATTGTGGCGACATTCTCTTCTGATGTGGTCACCCAAATTCTGATCACCTTCCTTAAAACTGTGCTACCTCTGCTCTTCCAATATCTTCTTGATTACCAAGTAGCATCTGCTGCTCAGATCCGTTTTCAACCATAAAGCTTGAATGTAGTTTACTGACTTATTCTCCTTTATGGATCTCTCCACGTGATGAGTTCCACCAATACGATTTCTCCCCATAAAGAGGAAATGATTTTTGCATGATCTGGTACTCAAGCTTCTGAATTCACCAAAATTTTTGTCAGTTCAATTTTAGTGGGTTAATCACCTGAAGTTCATGGAATAAATCTATCTTATAAATTAATCCTTGTTGTTTTCTGGTCCATATAATTCTGCTTGGTATATGGTAAAGGAATGTCGGTTTTTGGCCCAATATGTGAAACCTGTTAGTTTGTTGGGCATTGTTAAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGTTCTAAGGGAGGAGAATCGCCCAGGCCTTATAAGGATTCACTTATCTTATTAACCGCAAATGTGGAACTTTTGTCATTCTTTATCACCCAACCTCATGCCCATGCTTAGCATTTGGTGCGTGGGCAATTTTGATTTTGGGGGTCCCAACATTTGGTGAGATGAGTCCTGCTCTGATACCACGTTAAAGTGTGTGACCATCTCATTTAAAAGCTTAAGTGGTTAGATTGAGCATACTTTTATTATTTAATTATATTCTTAACCGGCATCAATAGGAATGGTCGCACTTGTTCTAATTTGATTATTTGAACCTGTAAATGATTGTCAGTTTCCTTTCACACAGCTTTCTTTCATCCTTTCCCATTTGGTCACATCTCTTCCATCCATCTCAGAGATATTTGAACAGGCAAAGAGATACTCTTACACTGAAGAATGCTCCACCCATCTTCTCATTGATGTAGATCATCCCCGCGAATAATATTCTCTGCTAGTTCTGGTCACTGCTCTCCTTTCTTACCTTGCCAGAATCCTTTAAGTTGAACCTACTCTGAGGGAGTTGTTCTTAACGAGTGTTAATGATTTATCCAATACCCGTCCATCTTTCATCCTAGCCTTCTCAGTATCTCAATTCTTCAGAACTTTCCCCCTCTGTCAACTTAAGCCAAGTTGAAACACCTTTTTCATTTAAAGCTTGACCCATCAAAACCCCATCTCTCTCTGTAGTGTTTTATTGCCATAGTTATTTTTGCAAATTTACTAAGCTCTGGCTCCCGAACCAATAGAAACTCATTGTATTTCTTTCTACATATATTTCAAATATCCATTACTTCTACCGAGAGAAGAAACCTCATCCTTAAATACAGACCACCTTTCCTGGATAGGTCTTCCTCTCTATTTTCTGAGATTCCTCGAAGCCCTTGTTGCCTCTGAGTACCACTTCTTTGAAGCTTCCTTTTTTCTCACATATATCCATGCTATTAGTTGACCTATGCCTGTTTGAACAGCCTCGGTTAATTGTTACTGAAATGCCGTTTAGTTGGCTTATGTCTGTTTGAACAACCTCGGTTAATCTTACCTCTTTTTGTTCTCCCAATTGAGTAGAATTGAAATATCACCTCTCCTTTTTTCGTCTGTGAATGTCAATCACTGCACCTTCATCTTCTGATTGTCTAGAACTTTAGATTTCCTATAAGTATATCACTATAGCATCGTGTTCATGTTGGTTATTTAATGTAATTAAGCTTCCATGTCAAATACTTAATATTTTCGCCTTTCCATGTTTAGTTCTTTCTTTATTTTTTTTGGAATGGGCTTGGAGGGAAGCTGTAAGGCTATAGCATCACTCATCGATAATTTTGAGTGTACATTTGGTAATTTTAGAATATCAAACTCCTAATTTTTTCTAAAAATTGTCAAATCAGGACACAAATCCCTCCTTAAATTTTGCAACGGATCATGTGTTGTATCTTGAACAGTATAATGGAATATGGTACAGAGTAATACACATATTTTCAAATAACTGATTACTGTTTATGGATAACTCATCAACATTATGCCAGAAATTGCACCCAAGGTGTTGCCTAGTGGTCAATGAAGTGAGAAGAGAACCATGAGGTCTCAAGTTCAAATCCTAGCGGAGATAAAAAGACTTGGGGGTTTCTTCCCATTTGCCTAAGCCTTTGAGGCAAAATTATCTGGTACCTATGCTGGTGGGAGATAACAGGTGCCCAATGGAATAATTAAGGCACAAGCAAGCAGGCTCGGACACCACGATTATTTTAAAAAGAAGTATGCTGGAAATTGCTTTTTTTGTTTTGCATGTGAATAATTTAGAGAACGCCACAGATGCACCAATATCTCCAGTACACATGT</genome_strand>
        <mrna_strand>GTTTCTTCAATTGCTAATCTACCAATACCTAGGTGTAGTTCGTTGCTTCTGAATTTGCAATTGGTATTGAAGGCAAAAATTAATTGAGATCGGAGAATCAGGTTTTCGATCGTTTTGGTTAACATGATAACAAGGTCTAAACTGGTTGAGCAGCTCAGAGATTATCAGATCCGATCTCAACACAAGTGCCCTCCTCTTACTTTCTTTTCACCAAAGCTTTATCTCTCCAACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGCACCCAAGGTGTTGCCTAGTGGTCAATGAAGTGAGAAGAGAACCATGAGGTCTCAAGTTCAAATCCTAGCGGAGATAAAAAGACTTGGGGGTTTCTTCCCATTTGCCTAAGCCTTTGAGGCAAAATTATCTGGTACCTATGCTGGTGGGAGATAACAGGTGCCCAATGGAATAATTAAGGCACAAGCAAGCAGGCTCGGACACCACGATTATTTTAAAAAGAAGTATGCTGGAAATTGCTTTTTTTGTTTTGCATGTGAATAATTTAGAGAACGCCACAGATGCACCAATATCTCCAGTACACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600903" ref_strand="+" ref_description="SGN-U600903 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157335336|emb|CAO61166.1| (e_value=7e-79) unnamed; (*ATH) AT2G18460.2 (e_value=9e-81) | Symbol: None | expressed protein, contains Pfam domain, PF04367: Protein of unknown function (DUF502); contains non-consensus splice sites | chr2:8008393-8009949 FORWARD | Aliases: None; ">
      <seq>gtattcatttttggggaagaagaaggagggagatctataatggcgacgccaagagcagatagggaattagagcttctcataccaatgggaggcgttgagaatattaatgctagtcactccaaatcttcttctccttctcattcccctaagattccatcttcttctaggtctcatcactcttctggcaaagaggcatttagcaaagttattcgtagctggacttggaaaaagttcatcagcggatgtgtcatcttatttcccatagccataactttttacatcacctggtggttcattcattttgtggatgccttcttttccccgatctataaccaccttggaatcaatgtatttggccttggatttgttacctccatgactttcatcttcttcgttggggtgttcatgtcctcatggttaggtgcatctcttcttagtttaggagagtggttcataaaaaaaatgcccctcatgagctacatctactctgcctccaagcaaattagctcagcaatttcaccagataaaacttcacatgccttcaaagaagtggccataataaggcatccgcgtcttgntgaatatgcatttggttttatcacttcaacagtcatacttcacaagcattcnngtgcagaggaactctgctgtgtttatgtgccaactaatcacctctatcttggnnatatctttcttgngaattctaaanacgttatgaggnccnatctctctgntcganagggtatagaaattgtaatctccgggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="66653" stop="68890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66952" g_stop="67143" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67144" i_stop="67430" i_length="287">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67431" g_stop="67483" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="245" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67484" i_stop="67587" i_length="104">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67588" g_stop="67697" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="355" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67698" i_stop="68013" i_length="316">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68014" g_stop="68181" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="523" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68182" i_stop="68252" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68253" g_stop="68477" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="748" r_length="225" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68478" i_stop="68569" i_length="92">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68570" g_stop="68590" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="769" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U600903" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66952" e_stop="67143"/>
          <exon e_start="67431" e_stop="67483"/>
          <exon e_start="67588" e_stop="67697"/>
          <exon e_start="68014" e_stop="68181"/>
          <exon e_start="68253" e_stop="68477"/>
          <exon e_start="68570" e_stop="68590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCATTTTTGGGGAAGAAGAAGGAGGGAGATCTATAATGGCGACGCCAAGAGCAGATAGGGAATTAGAGCTTCTCATACCAATGGGAGGCGTTGAGAATATTAATGCTAGTCACTCCAAATCTTCTTCTCCTTCTCATTCCCCTAAGATTCCATCTTCTTCTAGGTCTCATCACTCTTCTGGCAAAGAGGTTTCTCTCTATCATTCATACGCCATTTTGTTATCATCAATCTGATCCGTTACATTTCTCATTATATTTTCTATGGGTTAATCTGAAGCTTATTAGACTATATATAACATGAATCCTGTATTTGCCTTGACGTACTTGTATCAAATGTGCGCTTATTATTTCATGAAAATTCTCCATAAAAAATTGCGCAAAATCACAGTGATTACTTATATACTGAATTTCTATCCGGAAATCAGTCCAGGTAACATAGAGCTTGAATTGTGATGAATTTTTATCTGTCTATGCAGGCATTTAGCAAAGTTATTCGTAGCTGGACTTGGAAAAAGTTCATCAGCGGATGGTTAGTTTTGTATTGTTCAGAAATCTGTTCCTCCTGTTGTTATGCAGTGCTTTTCTCTTTGCTGAATGGTTTATTTGCATGAATGTTCTATAATTGTTTTGCAGTGTCATCTTATTTCCCATAGCCATAACTTTTTACATCACCTGGTGGTTCATTCATTTTGTGGATGCCTTCTTTTCCCCGATCTATAACCACCTTGGAATCAATGTATTTGGTTAGTACCTACGATCTTTATGTATTCATCTATTTAACTGTACAAAAACTGATGAAGATTAAGATTAAGATGGTTTTAAGTGTTGAATGACTGTGTGCGCGCGCCTCTCATTTTATGTATGCATACCGATACGTCTCTCCAATTTGAGTGCCTGTATTCTATATTACCATATTTAATTTGAGTATGTGGATGCTCTTCTGAGAAATGTCTACATGAAGTACTTTCAGTATCTGGTCTTTCTTTTGAGCATGAAAAGATTTATTGCTGTTGTTAAATGCACATTACATTTATGGTTAGTGTTCATATTAATTCACAGGCCTTGGATTTGTTACCTCCATGACTTTCATCTTCTTCGTTGGGGTGTTCATGTCCTCATGGTTAGGTGCATCTCTTCTTAGTTTAGGAGAGTGGTTCATAAAAAAAATGCCCCTCATGAGCTACATCTACTCTGCCTCCAAGCAAATTAGCTCAGCAATTTCACCAGGTATTCTACCAAAATTTGAAATTATGTTTGAACATTCCAAATACTAAACAGAATGTAGCAATTGTTTCCAGATAAAACTTCACATGCCTTCAAAGAAGTGGCCATAATAAGGCATCCGCGTCTTGGTGAATATGCATTTGGTTTTATCACTTCAACAGTCATACTTCACAAGCATTCAGGTGCAGAGGAACTCTGCTGTGTTTATGTGCCAACTAATCACCTCTATCTTGGAGATATCTTTCTTGTGAATTCTAAAGACGTTATGAGGCCCAATCTCTCTGTTCGAGAGGGTATAGGTAAGAGTCTAAATTCGAGCTTTTTGACAAACTAACTTTGCAGTTTTTACCTTCATCTCTTTTTAACGACGTTTAAATTTCAAACTATGTAGAAATTGTAATCTCCGGGGGCA</genome_strand>
        <mrna_strand>GTATTCATTTTTGGGGAAGAAGAAGGAGGGAGATCTATAATGGCGACGCCAAGAGCAGATAGGGAATTAGAGCTTCTCATACCAATGGGAGGCGTTGAGAATATTAATGCTAGTCACTCCAAATCTTCTTCTCCTTCTCATTCCCCTAAGATTCCATCTTCTTCTAGGTCTCATCACTCTTCTGGCAAAGAG...............................................................................................................................................................................................................................................................................................GCATTTAGCAAAGTTATTCGTAGCTGGACTTGGAAAAAGTTCATCAGCGGATG........................................................................................................TGTCATCTTATTTCCCATAGCCATAACTTTTTACATCACCTGGTGGTTCATTCATTTTGTGGATGCCTTCTTTTCCCCGATCTATAACCACCTTGGAATCAATGTATTTG............................................................................................................................................................................................................................................................................................................................GCCTTGGATTTGTTACCTCCATGACTTTCATCTTCTTCGTTGGGGTGTTCATGTCCTCATGGTTAGGTGCATCTCTTCTTAGTTTAGGAGAGTGGTTCATAAAAAAAATGCCCCTCATGAGCTACATCTACTCTGCCTCCAAGCAAATTAGCTCAGCAATTTCACCAG.......................................................................ATAAAACTTCACATGCCTTCAAAGAAGTGGCCATAATAAGGCATCCGCGTCTTGNTGAATATGCATTTGGTTTTATCACTTCAACAGTCATACTTCACAAGCATTCNNGTGCAGAGGAACTCTGCTGTGTTTATGTGCCAACTAATCACCTCTATCTTGGNNATATCTTTCTTGNGAATTCTAAANACGTTATGAGGNCCNATCTCTCTGNTCGANAGGGTATAG............................................................................................AAATTGTAATCTCCGGGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581967" ref_strand="+" ref_description="SGN-U581967 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ctggcaaggaaaaattccttggtttcatgaacttacaaatgacccataccaatcttagattatttacatgctcctctataacataatattgtacttgttctcatccaaaaagaaatatatgcaagttgttgagaagagaggggaaaaaatatatcagaggcagcctccttgttccaatctgtataggtatgagttgagctcagtttctaacttgagctcatttgacaaaatcttggttgttcaatattgttgtactaaaatcagataaatgtaccaaaaaatcacaaagataagaggagaaagattggagatattttcttgtaagagcctctatccatgcattattaaccctcatttctacgtctgtatgtccagtttactcgtcgagcagtatcttttccttggtttcttgtttaaatggttgagtaatcaaacttgtggtactgcaaattttccaactctcggagataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="69405" stop="68334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69105" g_stop="68634" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U581967" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69105" e_stop="68634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCAAGGAAAAATTCCTTGGTTTCATGAACTTACAAATGACCCATACCAATCTTAGATTATTTACATGCTCCTCTATAACATAATATTGTACTTGTTCTCATCCAAAAAGAAATATATGCAAGTTGTTGAGAAGAGAGGGGAAAAAATATATCAGAGGCAGCCTCCTTGTTCCAATCTGTATAGGTATGAGTTGAGCTCAGTTTCTAACTTGAGCTCATTTGACAAAATCTTGTTTGTTCAATATTGTTGTACTAAAATCAGATAAATGTACCAAAAAATCACAAAGATAAGAGGAGAAAGATTGGAGATATTTTCTTGTAAGAGCCTCTATCCATGCATTATTAACCCTCATTTCTACGTCTGTATGTCCAGTTTACTCGTCGAGCAGTATCTTTTCCTTGGTTTCTTGTTTAAATGGTTGAGTAATCAAACTTGTGGTACTGCAAATTTTCCAACTCTCGGAGATAAA</genome_strand>
        <mrna_strand>CTGGCAAGGAAAAATTCCTTGGTTTCATGAACTTACAAATGACCCATACCAATCTTAGATTATTTACATGCTCCTCTATAACATAATATTGTACTTGTTCTCATCCAAAAAGAAATATATGCAAGTTGTTGAGAAGAGAGGGGAAAAAATATATCAGAGGCAGCCTCCTTGTTCCAATCTGTATAGGTATGAGTTGAGCTCAGTTTCTAACTTGAGCTCATTTGACAAAATCTTGGTTGTTCAATATTGTTGTACTAAAATCAGATAAATGTACCAAAAAATCACAAAGATAAGAGGAGAAAGATTGGAGATATTTTCTTGTAAGAGCCTCTATCCATGCATTATTAACCCTCATTTCTACGTCTGTATGTCCAGTTTACTCGTCGAGCAGTATCTTTTCCTTGGTTTCTTGTTTAAATGGTTGAGTAATCAAACTTGTGGTACTGCAAATTTTCCAACTCTCGGAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599720" ref_strand="+" ref_description="SGN-U599720 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348153|emb|CAO22863.1| (e_value=2e-57) unnamed; (*ATH) AT2G25737.1 (e_value=5e-45) | Symbol: None | expressed protein, contains Pfam profile: PF01925 domain of unknown function DUF81 | chr2:10984014-10986978 FORWARD | Aliases: None; ">
      <seq>ggggatgcttcgcaacgtttactggaaagaattgggacttctaatgtttgtttgggtggctttccttgctattcaagttgtcaagacctacaccgtgacatgctccatcgggtactggattttaaatttattgcaggtacctgttgctgtttcggtttcgttgtatgaagcaatatgtctgtacaaggggacaagggtgattgcatcaaaaggaaaggagataacaaactggaagccacatctactcttcttttactgttgttgtggcatagttgctggtattgttggcggattgcttggtctcggaggtggcttcatccttggaccactgtttctagaacttggaattcctcctcaggtagcaagtgcaacatcaaccttttcaatgactttctcatcctctatgtcagttgtgcaatattacctattgaagcgtttccctgttccatacgctacttatttcgtttcaatagcaacaattgctgcagtagttggtcaacacgttataanaanagtanttgcactgcttggaagagcctctataatcatattcntactggncatgacaatanttaccagtgcaatcagcttnnnnggtgtgggganagcaaatatgatagagaanctnaannnnngactatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="80582" stop="78798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80286" g_stop="80202" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80201" i_stop="80105" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80104" g_stop="80054" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="136" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80053" i_stop="79968" i_length="86">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79967" g_stop="79746" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="358" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79745" i_stop="79551" i_length="195">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79550" g_stop="79457" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="452" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79456" i_stop="79358" i_length="99">
            <donor d_prob="0.843" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79357" g_stop="79217" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="593" r_length="141" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79216" i_stop="79135" i_length="82">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79134" g_stop="79081" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="645" r_length="52" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U599720" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80286" e_stop="80202"/>
          <exon e_start="80104" e_stop="80054"/>
          <exon e_start="79967" e_stop="79746"/>
          <exon e_start="79550" e_stop="79457"/>
          <exon e_start="79357" e_stop="79217"/>
          <exon e_start="79134" e_stop="79081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATGCTTCGCAACGTTTACTGGAAAGAATTGGGACTTCTAATGTTTGTTTGGGTGGCTTTCCTTGCTATTCAAGTTGTCAAGGTAAACAATAATCTTTCTAGTCTCCAACACATACTCATGGTGTATATGCTGCTTCTTTATTTTTATACCAAAGGTTTATTCATTTTTTTGCTTGCAGACCTACACCGTGACATGCTCCATCGGGTACTGGATTTTAAATTTATTGCAGGTAATTCCCATTTAGTTTGGGAATTAAGACAAAAACTTTTTTGAATGAGCAAGAAGGATGACGATTTGATATATGTGTTAAATTAGGTACCTGTTGCTGTTTCGGTTTCGTTGTATGAAGCAGTATGTCTGTACAAGGGGACAAGGGTGATTGCATCAAAAGGAAAGGAGATAACAAACTGGAAGCCACATCTACTCTTCTTTTACTGTTGTTGTGGCATAGTTGCTGGTATTGTTGGCGGATTGCTTGGTCTCGGAGGTGGCTTCATCCTTGGACCACTGTTTCTAGAACTTGGAATTCCTCCTCAGGTACATGTTGCCTTTTAATACTCCATATATTCTATCTGCTTCTTCCCTGTTTCTTCTTTCTTGTACCTATACAATAACTCTGTTCATGTAAAACCAATCGTGTTTAACTTCCATACATTGACAGTCGGGTAATACAATAACTATTACTCACAATAAGTACTCGAATTGACAAAGTGATCAAAACAAATATGGCAGGTAGCAAGTGCAACATCAACCTTTTCAATGACTTTCTCATCCTCTATGTCAGTTGTGCAATATTACCTATTGAAGCGTTTCCCTGTCCCATACGGTACGCAACATAGACAAAAAAAAATTATGAAGAAATTATCTTCACTATAACTACCTTACGAAGAAATTTAATCTTGACAGTTTATATTTCAAAATGCAGCTACTTATTTCGTTTCAATAGCAACAATTGCTGCAGTAGTTGGTCAACACGTTATAAGAAGAGTAATTGCACTGCTTGGAAGAGCCTCTATAATCATATTCATACTGGCCATGACAATATTTACCAGTGCAATCAGCTTAGGTATAAATCATCTTTCATCCTGTCAATTGCTTCTTTCTGTTTTCTGAGCCTTAAAAATAACCTTATGTTGGATAACTGGCAGGTGGTGTGGGGATAGCAAATATGATAGAGAAGCTGAAGAACAATGACTATATGG</genome_strand>
        <mrna_strand>GGGGATGCTTCGCAACGTTTACTGGAAAGAATTGGGACTTCTAATGTTTGTTTGGGTGGCTTTCCTTGCTATTCAAGTTGTCAAG.................................................................................................ACCTACACCGTGACATGCTCCATCGGGTACTGGATTTTAAATTTATTGCAG......................................................................................GTACCTGTTGCTGTTTCGGTTTCGTTGTATGAAGCAATATGTCTGTACAAGGGGACAAGGGTGATTGCATCAAAAGGAAAGGAGATAACAAACTGGAAGCCACATCTACTCTTCTTTTACTGTTGTTGTGGCATAGTTGCTGGTATTGTTGGCGGATTGCTTGGTCTCGGAGGTGGCTTCATCCTTGGACCACTGTTTCTAGAACTTGGAATTCCTCCTCAG...................................................................................................................................................................................................GTAGCAAGTGCAACATCAACCTTTTCAATGACTTTCTCATCCTCTATGTCAGTTGTGCAATATTACCTATTGAAGCGTTTCCCTGTTCCATACG...................................................................................................CTACTTATTTCGTTTCAATAGCAACAATTGCTGCAGTAGTTGGTCAACACGTTATAANAANAGTANTTGCACTGCTTGGAAGAGCCTCTATAATCATATTCNTACTGGNCATGACAATANTTACCAGTGCAATCAGCTTNN..................................................................................NNGGTGTGGGGANAGCAAATATGATAGAGAANCT-NA-ANNNNNGACTATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597385" ref_strand="+" ref_description="SGN-U597385 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348153|emb|CAO22863.1| (e_value=2e-37) unnamed; (*ATH) AT2G25737.1 (e_value=1e-29) | Symbol: None | expressed protein, contains Pfam profile: PF01925 domain of unknown function DUF81 | chr2:10984014-10986978 FORWARD | Aliases: None; ">
      <seq>gaaaggatattcaagcatacaaattaaaagtttgtttctgctcttttaattcccctcaggttcttcaaagtggaatatatatagaagtagccaatttattacctcagaggaagctacttctatatatatttcttaattaaggctatttgagttgaactttttatgatggctaatgaagagataaaaaagagaatgaaggcgtttttcgtatcagcagtatggatactatgctggggattattcataataagcgaagctgggattaatgcagaaaggcttactctgaaggataaattagagccagctgctacttataacattagttatgtagagaataatgagatgagaccacaaacctttgcagtaaggcttgtgcattttctgtggagtggaaagtcctcttatgagcacgtttggccggagatggagtttggatggagagtaattgttggatccattgtgggattctttggtgctgctttgggaagcgttggaggggttggcggcggtggaatttttgttccaatgctaactcttattattggctttgatccaaaatcatctacagctatatccaagtgcatgataatgggagcagctggatcaacagtgtactacaacatgaggctgaggcacccaactctagatatgcctataattgactatgatttggctttgctcttacaacctatgctcatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="82253" stop="80681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81953" g_stop="81534" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81533" i_stop="81348" i_length="186">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81347" g_stop="81188" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="580" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81187" i_stop="81104" i_length="84">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81103" g_stop="80981" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="703" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U597385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81953" e_stop="81534"/>
          <exon e_start="81347" e_stop="81188"/>
          <exon e_start="81103" e_stop="80981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGATATTCAAGCATACAAATTAAAAGTTTGTTTCTGCTCTTTTAATTCCCCTCAGGTTCTTCAAAGTGGAATATATATAGAAGTAGCCAATTTATTACCTCAGAGGAAGCTACTTCTATATATATTTCTTAATTAAGGCTATTTGAGTTGAACTTTTTATGATGGCTAATGAAGAGATAAAAAAGAGAATGAAGGCGTTTTTCGTATCAGCAGTATGGATACTATGCTGGGGATTATTCATAATAAGCGAAGCTGGGATTAATGCAGAAAGGCTTACTCTGAAGGATAAATTAGAGCCAGCTGCTACTTATAACATTAGTTATGTAGAGAATAATGAGATGAGACCACAAACCTTTGCAGTAAGGCTTGTGCATTTTCTGTGGAGTGGAAAGTCCTCTTATGAGCACGTTTGGCCGGTAAGATTATAGAGAGCATATTTTGTTTACTCAATATCAACATGAAAATATATATGACTTGTTTTAGATTACTAGTTTCAAAAATCTTTTTTTTATTTCTCAAATTCCGTAACCTGACAAACAACATGATCACATAAAAAGTAGTAATGAAATGTAAATAATGTTTTTTCCTTTGGGAGCTTGCAGGAGATGGAGTTTGGATGGAGAGTAATTGTTGGATCCATTGTGGGATTCTTTGGTGCTGCTTTGGGAAGCGTTGGAGGGGTTGGCGGCGGTGGAATTTTTGTTCCAATGCTAACTCTTATTATTGGCTTTGATCCAAAATCATCTACAGCTATATCCAAGTGTAAGTATTTATGTACCATATACTAACATGTAGTTAGTATGTATATTTGTGAAACAGTACTAAACTATATTGATTTTGTTAAAGGCATGATAATGGGAGCAGCTGGATCAACAGTGTACTACAACATGAGGCTGAGGCACCCAACTCTAGATATGCCTATAATTGACTATGATTTGGCTTTGCTCTTACAACCTATGCTCATGCTTG</genome_strand>
        <mrna_strand>GAAAGGATATTCAAGCATACAAATTAAAAGTTTGTTTCTGCTCTTTTAATTCCCCTCAGGTTCTTCAAAGTGGAATATATATAGAAGTAGCCAATTTATTACCTCAGAGGAAGCTACTTCTATATATATTTCTTAATTAAGGCTATTTGAGTTGAACTTTTTATGATGGCTAATGAAGAGATAAAAAAGAGAATGAAGGCGTTTTTCGTATCAGCAGTATGGATACTATGCTGGGGATTATTCATAATAAGCGAAGCTGGGATTAATGCAGAAAGGCTTACTCTGAAGGATAAATTAGAGCCAGCTGCTACTTATAACATTAGTTATGTAGAGAATAATGAGATGAGACCACAAACCTTTGCAGTAAGGCTTGTGCATTTTCTGTGGAGTGGAAAGTCCTCTTATGAGCACGTTTGGCCG..........................................................................................................................................................................................GAGATGGAGTTTGGATGGAGAGTAATTGTTGGATCCATTGTGGGATTCTTTGGTGCTGCTTTGGGAAGCGTTGGAGGGGTTGGCGGCGGTGGAATTTTTGTTCCAATGCTAACTCTTATTATTGGCTTTGATCCAAAATCATCTACAGCTATATCCAAGT....................................................................................GCATGATAATGGGAGCAGCTGGATCAACAGTGTACTACAACATGAGGCTGAGGCACCCAACTCTAGATATGCCTATAATTGACTATGATTTGGCTTTGCTCTTACAACCTATGCTCATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602892" ref_strand="+" ref_description="SGN-U602892 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cacataacaaacacattaccgggcacacatccccaataaattcgcatttaacaagtcacattagaactcagcaagtaatttaccaaacaattccaaaagaagatacaaaattcaaaacatgggctgatgcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="85838" stop="86569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86138" g_stop="86269" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U602892" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>132</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86138" e_stop="86269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATAACAAACACATTACCGCGCACACATCCCCAATAAATTCGCATTTAACAAGTCACATTAGAACTCAGCAAGTAATTTACCAAACAATTCCAAAAGAAGATACAAAATTCAAAACATGGGCTGATGCGC</genome_strand>
        <mrna_strand>CACATAACAAACACATTACCGGGCACACATCCCCAATAAATTCGCATTTAACAAGTCACATTAGAACTCAGCAAGTAATTTACCAAACAATTCCAAAAGAAGATACAAAATTCAAAACATGGGCTGATGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582681" ref_strand="+" ref_description="SGN-U582681 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>tgcaggacagtccccaattggcgtccacgcagacttggtggcggacttggaacaacaagagttggaaatgaagatgctactagagaggcggttcagcctggaagggcagcatctcgctctgaggagccaagagcacgagatgacagggatagggatcgggagaagtcccgtgaaagggtgcgagataaggacagagagaaatctcgtgagcgttctcatgacaggccaagggaacgtgaaagagatgacaaacatcatagggaacgcgagagaaccagagaaagagaaaaagatcgtggtcgtgaccgtgatcgagaccgcgaacgtgatagagaatatgattatgagcatgttgattcaaaacacgagcgagaccgacacggtgacaaagagaggaattatgatcctgcagaacctgaagatgatcatggacattatgactattatgatcaccaccaaggtcgaggagattatgagaatccagatgcacaaggtggggatgatcgctataaagatgccagtcgtggtcatgatcgttatgatcaaatggaagaggataattatgcttatgaccacggggcatctgagacaaaagaaagggatcgggattacaagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="88215" stop="86236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87916" g_stop="87834" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87833" i_stop="87390" i_length="444">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87389" g_stop="87321" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="152" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87320" i_stop="87137" i_length="184">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87136" g_stop="86964" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="325" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86963" i_stop="86829" i_length="135">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86828" g_stop="86536" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="618" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U582681" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87916" e_stop="87834"/>
          <exon e_start="87389" e_stop="87321"/>
          <exon e_start="87136" e_stop="86964"/>
          <exon e_start="86828" e_stop="86536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAACAGTCCCCAATTGGCGTCCCCGCAGACTTGGTGGTGGACTTGGAACAACAAGAGTTGGAAATGAAGATGCTACTAGGTATTGCATGAACTTGTCATATGTGCATTGCATAGTGCTATAACGGACATTGATCTCAGCTCTTCTTTAGTGCAATAATGGTTCCTGTAGTGTCTATGGAGTAAGAACGCTATTTTGATAGATACAGCAAGACATGTTTGCTTGTAGTTGACATGAACTGCTTTTTTGAATTTCAACTCATCTTTTGGGTTATATGGATGCTTCAGTTTGTGTTTTTTTCCCTATAAAGGACTTGCTGCTCTGAGCATTTATGTATGACGTCTTGCTTAGAAGTTGAATTTATTATTGTTTGGCATTCAGTTTGATAATTACTCGTAAAATGTTCTTAAAAGTAGTTTTTTTTTTGTGTAGTTGCCCTCTTGGTATGATTGTAAAAGTGAAAAGCTTAAATTCTTGGATGGAATTTTAATTATTGAAGACTCTAATACTCCTTTTATTTTTCAGAGAGGTGGTTCAGCCTGGAAGGGCAGCATCTCGCTCTGAGGAGCCAAGAGCACGAGATGACAGGGATAGGTAACAACCTAGGCATTTATAGCTTATGCTTGCTTTGAGTTTCTTTCTCCCAATTTGACTCCCAGACAAATTTCTACTTCTCCAAGGATGAGTTGTCTGATTTACTACTCTGTTTAGTTTAAATGTGAGTTAATACTATAATGTGTTTCACGTCTAATACAATTATGAATTCCCATATTAGCAGGGATCGGGAGAAGTCCCGTGAAAGGGTGCGAGATAAGGACAGAGAGAAATCTCGTGAGCGTTCTCATGACAGGCCAAGGGAACGTGAAAGAGATGACAAACATCATAGGGAACGCGAGAGAACCAGAGAAAGAGAAAAAGATCGTGGTCGTGACCGTGATCGAGACCGCGAACGTGATAGGACACGTGACCGTGAGCGAGGCAAAGACAGAGACCGGGATGGTCACCGTGAGCGAGATCGTCACCGTGAGAAGGACAGGGAAAGAGGTAGGGATGAAGGTGAGGTTGACCAGGGTCGTGGGCGTTCTCGTGATAGAGAATATGATTATGAGCATGTTGATTCAAAACACGAGCGAGACCGACACGGTGACAAAGAGAGGAATTATGATCCTGCAGAACCTGAAGATGATCATGGACATTATGACTATTATGATCACCACCAAGGTCGAGGAGATTATGAGAATCCAGATGCACAAGGTGGGGATGATCGCTATAAAGATGCCAGTCGTGGTCATGATCGTTATGATCAAATGGAAGAGGATAATTATGCTTATGACCACGGGGCATCTGAGACAAAAGAAAGGGATCGGGATTACAAGCGT</genome_strand>
        <mrna_strand>TGCAGGACAGTCCCCAATTGGCGTCCACGCAGACTTGGTGGCGGACTTGGAACAACAAGAGTTGGAAATGAAGATGCTACTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGGTTCAGCCTGGAAGGGCAGCATCTCGCTCTGAGGAGCCAAGAGCACGAGATGACAGGGATAG........................................................................................................................................................................................GGATCGGGAGAAGTCCCGTGAAAGGGTGCGAGATAAGGACAGAGAGAAATCTCGTGAGCGTTCTCATGACAGGCCAAGGGAACGTGAAAGAGATGACAAACATCATAGGGAACGCGAGAGAACCAGAGAAAGAGAAAAAGATCGTGGTCGTGACCGTGATCGAGACCGCGAAC.......................................................................................................................................GTGATAGAGAATATGATTATGAGCATGTTGATTCAAAACACGAGCGAGACCGACACGGTGACAAAGAGAGGAATTATGATCCTGCAGAACCTGAAGATGATCATGGACATTATGACTATTATGATCACCACCAAGGTCGAGGAGATTATGAGAATCCAGATGCACAAGGTGGGGATGATCGCTATAAAGATGCCAGTCGTGGTCATGATCGTTATGATCAAATGGAAGAGGATAATTATGCTTATGACCACGGGGCATCTGAGACAAAAGAAAGGGATCGGGATTACAAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574992" ref_strand="+" ref_description="SGN-U574992 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157348154|emb|CAO22864.1| (e_value=1e-67) unnamed; (*ATH) AT3G50670.1 (e_value=1e-69) | Symbol: None | U1 small nuclear ribonucleoprotein 70 (U1-70k) | chr3:18837281-18840568 REVERSE | Aliases: T3A5.50; (*SWP) sp|Q42404|RU17_ARATH (e_value=1e-68) U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1; ">
      <seq>tccaatcgtccgattaacgtaactccacttcttggggcggcgattcccatctagcaaaaaccctagtcggcttcaatgggagacttcaacgatgccttcatgcggaacaaccctaacgttcaggcccgtgcaaaggcccagaatcgcgctaatgtcatgcaactcaagctgattggtcaaagtcatccaactgggttgactgctaatcttctgaagttgtttgagccccgaccacctttggagtacaaaccaccccctgagaagagaaaatgcccttcatatactgggatggcacaatttgttagtaacttcgctcaacctggtgatccagaatatgctccaccaatccctgaggttgaaaccccgactgaacgaagagctaggatccacaagatacggctggaggagggtgctaaaaaggctgctgaggagcttgaaaaatatgatcctagcagcgacccaaatgctaccggggatccatacaagacactatttgttgcaagacttaattatgagacaacagaaagcagagtcaaacgcgaatttgaggcttatggtccaatcaagcgggttcgcttggttatggacaagacaaacaataaacccaggggttatgctttcattgagtatgtgccatacacgggatatgaaagctgcgtataaacaagctgatggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="92257" stop="87656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91957" g_stop="91787" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91786" i_stop="91011" i_length="776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91010" g_stop="90896" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="286" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90895" i_stop="90810" i_length="86">
            <donor d_prob="0.768" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90809" g_stop="90730" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="366" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90729" i_stop="90011" i_length="719">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90010" g_stop="89935" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="442" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89934" i_stop="89855" i_length="80">
            <donor d_prob="0.606" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89854" g_stop="89790" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="507" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89789" i_stop="89676" i_length="114">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89675" g_stop="89613" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="570" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89612" i_stop="88138" i_length="1475">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88137" g_stop="88056" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="653" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88055" i_stop="87982" i_length="74">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87981" g_stop="87956" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="679" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U574992" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91957" e_stop="91787"/>
          <exon e_start="91010" e_stop="90896"/>
          <exon e_start="90809" e_stop="90730"/>
          <exon e_start="90010" e_stop="89935"/>
          <exon e_start="89854" e_stop="89790"/>
          <exon e_start="89675" e_stop="89613"/>
          <exon e_start="88137" e_stop="88056"/>
          <exon e_start="87981" e_stop="87956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCGTCCGATTAACGTAACTCCACTTCTTGTGGCGGCGATTCGCATCTAGCAAAAACCCTAGTCGGCTTCAATGGGAGACTTCAACGATGCCTTCATGCGGAACAACCCTAACGTTCAGGCCCGTGCAAAGGCCCAGAATCGCGCTAATGTCATGCAACTCAAGCTGGTAAGTTATAACCCTCGATCTGTTGTCTTTGTTGTTTACTGGCTTAGATTGTTAAACTAGGCCTTTTTTTTGTGTTAGTGTTTTTTGATTGTTTAGGTTTTCCGTAGGTTCTTTCTTGATGAGTATTAGGTTATAAATTTAGATGATTTTATGTCCTGTTGCTACAATTTGTTTGGTCTTTCGTTATTCAGCAAAGGAAAAATTAGAGTAGAAGTGAAGTACCGATATAGACTATACCGACTTGTTGGGATTATGGTCTAGTCAGTTGTTGTTGGTAAACTCATATTAAGTCCCTCTCTTAATTTGGTTGGGGATTCTCAATGTCGATTTATTTATAATCTTAGGTACCTATAATCTTTCCCAAAATATTAATTGTATGATACTGGGGGAAACAGACCTGGATGGAGTGGAATTGATGTGGATTCATATGTCAACCCCCAAGTTGTTGGTTTCTTGATGTCTTGGTGATTTGTTATTATGGGTAGTGAGTAAGGTTTTGTGGTTTAATTCTTGTTTCGTGATATTTTAGAACTCGTCCAGTTCCAACTCAAGGTTCATTATTTTTGTTTTTTGTGAAATGAGATTCGAAATTGTCTAAGATGCATATTTGTTGTGCTTTTATGACATCTAAATATACTGTGTGATTAGATAGTTGGCTTAGAATAACAGTAGAACTATGTTGTCAGGCTGCTGCACTATTGGATATCCTTTTCTTTGTTCTTCACTGGTGCTACAAGTTTGTGTACTAACTTTGTTAATATACTTAATATATGCAGATTGGTCAAAGTCATCCAACTGGGTTGACTGCTAATCTTCTGAAGTTGTTTGAGCCCCGACCACCTTTGGAGTACAAACCACCCCCTGAGAAGAGAAAATGCCCTTCATATACTGGTTAACATTCTTCATGGATTGAGTCATTTCTTGTTCCATCAGTCATCTCGTATAATTCTTAGATATATTCTCATTTCTCTTTTTAGGGATGGCACAATTTGTTAGTAACTTCGCTCAACCTGGTGATCCAGAATATGCTCCACCAATCCCTGAGGTTGAAACCCCGGTAAGACTTCATTTTATGTACTGCAAATTTTTTTTCTGATCTTTTTGGGTAAGCCGATATATTTAATTGAGGGTTGCATATTCATTCTTCTCCCTTCTTCTTCTCTTAACAGTGATATTAATTTCATGAATATGATGTTTGCTTGATTATTTATGTGTGCTCTGCCATTTCATGTGCTGCTGAATTGTTTTCTATTTCGAGATGAATGAATCTTGAATGTCCAGCAAATGACACTAAAACATTGTGTTGTTGTTGAATTATTGGTAATATCATGTCTTGTTCTTTATCTTTTTCTTTAGGGTACTTCTTTAGTTCTGTGTTTTATGTTTGTCTTCACTGAATAATGCAAAGATGTCCTGTGTAATGGGAAGGTGCTATTATCATCTCTCCAAGTTGTAGAGCTGTTGTAACCATTGGATCTCATCTTAGAAGATACTGTTGTCTCCCCAAGTCAGTGGAGCTGAAACTGTTGTAAATTGGTAGTGCATGTAGTTAGAGTAGTGCATTATAATTACTATTTAACTTGAGATGTGGGTTATCTAATCCAACTCATTTGGGATTGAGACAGTTATATCCTTTGGTATCCAACCGGTTCTGAAGAGTTACTTTTTCCAGAAAAGTATAATAAGATGTAACATAAGCTGTGCAATTACATACTATGGTGAATCTGTGTATATTTTTTCTTTATGCTCATAGATTGCTTTTGGTACTGCATGCAGACTGAACGAAGAGCTAGGATCCACAAGATACGGCTGGAGGAGGGTGCTAAAAAGGCTGCTGAGGAGCTTGAAAAATGTATCAAGTGCTTAAATTTTCTGAATATTTGAGAGACATTTATGGGAAAAATGGAATAATTTTTTATTTCTGCTGGACAGATGATCCTAGCAGCGACCCAAATGCTACCGGGGATCCATACAAGACACTATTTGTTGCAAGACTTGTGAGTGAAGATCTTTTTAGATCATTTTTGCTGCTGTGAATATAATCTTTTTCTTTTTTTTTGACAATGGAATATCTCCTTAATTTTGTTGATTGTCTTTTACATGTTTTTCAGAATTATGAGACAACAGAAAGCAGAGTCAAACGCGAATTTGAGGCTTATGGTCCAATCAAGCGGGTAGGTATTATAGAGCATCCCTTTTGGGGCTCAGGTTACTGGCTTTTGGTTGGTAAGATGTGTACTTTTATGGTGGCATGGTACTTCCTCCGTTTCTCAAATTGATATTTCCACAACTTATTATTTCTTAAAGCATAGAACATCTTACGATTTTAGCAGCTTCTCTTTATGTACTTCATAAAAAAAATTAGCATCTTATTAAAACAGATTTTGATAACCAAAATTTAAAGAACTGTGGGGTCGATACACTTTCTGAAATGAGGGTGGATTACCTAAAAGGAAGTGTCACTCATTACTCTTCTAAGTTTCAAACTTCCACTTAAAGGTGCATGCGATTCACATTCTGTGTATAAACTTATAGCATGGATTGCACTTCAGTATTTTGATAAGAACTTATTGAATTCGGCAGTTGTCTGTTAAATAATAAACTGATTAGCTCTCGACTTTCTTAGTGCTTCAGATCATCAAAAAACACGTTTTATCCGGAGAACTTTTTTTTCAATTGTATCTTTGGGTGCATCTCTTCAGGCTGTAGTTAAGAAATGGATTGTTTTTTAAACTGCTAGCACTCTTCCCTGGTGTTCGAGGTGCATACTGCTCTCTGAAAATGGGTGATTTTTTTTGTGAAGTTACTAGTTTTTCTTTGCTTTGTAAAATAAAGGTCAGATTGCCAGTATGCCCTTCCTCAGGTAACAGTACTCCAATTATTGAGTATCAGTTTGATGCCTTTATCCTCTTATCCTGGTTTGGATATCATTAGTTTCAAGTACTATTCATTCTGGTATTCCTTTAGTTTCTAGAACCACAAAGGTAAAGATGTTCAACTCCTAGGTATTTTCCTGGTAAGGGTAAAACTTAATTATCTGGTAGCTTTATGTTTTTTTGAGTTGCCAAACATAACCATTCAATTTCCAAGTCCGAGCTACATTACATGAAACAAAGCTGAACACTTAGATGAGCAGAGCAATGATGCAATATATCTTTGGCCTCTTATTCCAAGCAACACCGGAGATTGATACTTGCCTTTACTTGGTAAAAAAACTGTTGGGAGTATCGACCTTTTCTCTTCTTTACTCTTCTTACATCCCATCTATGCTGCTAAGATTTTACTTTTGGATTCAAAGGCTATCAAAAAAGTTTCAAGCATTTCAGGAGACACCTGGTATTTGACTATACTTCTATAATAATTTATTTTATTTTAAAATGTTCCCTGGTAAGGGGAGTTAGAATATATTGCAAACATAAGGCCACAGTTCTTGTGCAACTCTAGCAGTGATGGTGAAGCATCTCGCCTGGGAGCTCTTTGATTCAAAGGTGAGCACGGCTAATTAGGCATAGTGCCTGCCGTGCCATTAGGAGCTTACTATACCTAATCGCGTTGAGTAGATAAAAAACATTAACTTTTTTGACCGCTGCATCGAAAATGATTATAATGTTATTAGTAGTGTCAATTCCATAAATTGTTTGAGTTTCAGGTTCGCTTGGTTATGGACAAGACAAACAATAAACCCAGGGGTTATGCTTTCATTGAGTATGTG-CATACACGGGATATGAAAGGTTTCTCTAAACTCCTGTTCTTCTGTCTTTTCGAAGTCTCACTTCCATCTCTAATTCTTTTGGATATAATTCAGCTGCGTATAAACAAGCTGATGGAAAG</genome_strand>
        <mrna_strand>TCCAATCGTCCGATTAACGTAACTCCACTTCTTGGGGCGGCGATTCCCATCTAGCAAAAACCCTAGTCGGCTTCAATGGGAGACTTCAACGATGCCTTCATGCGGAACAACCCTAACGTTCAGGCCCGTGCAAAGGCCCAGAATCGCGCTAATGTCATGCAACTCAAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTCAAAGTCATCCAACTGGGTTGACTGCTAATCTTCTGAAGTTGTTTGAGCCCCGACCACCTTTGGAGTACAAACCACCCCCTGAGAAGAGAAAATGCCCTTCATATACTG......................................................................................GGATGGCACAATTTGTTAGTAACTTCGCTCAACCTGGTGATCCAGAATATGCTCCACCAATCCCTGAGGTTGAAACCCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAACGAAGAGCTAGGATCCACAAGATACGGCTGGAGGAGGGTGCTAAAAAGGCTGCTGAGGAGCTTGAAAAAT................................................................................ATGATCCTAGCAGCGACCCAAATGCTACCGGGGATCCATACAAGACACTATTTGTTGCAAGACTT..................................................................................................................AATTATGAGACAACAGAAAGCAGAGTCAAACGCGAATTTGAGGCTTATGGTCCAATCAAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTGGTTATGGACAAGACAAACAATAAACCCAGGGGTTATGCTTTCATTGAGTATGTGCCATACACGGGATATGAAAG..........................................................................CTGCGTATAAACAAGCTGATGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600046" ref_strand="+" ref_description="SGN-U600046 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tacatctttcaggagcattgaagatttgttgagacgagcagttaacgggagaggttgaatttctgggctgccggaaatttcaccgttgttgaaatatgcaatcacctcctagtactgcttcgtccgacaaagatgacactacttcctcctctccttctaattcctccccgtctcccccaccaccagctccgcctacctccccacccccagaatctcctccacctgtaaattctccgccgccgtcaaaggaatcttctcctccgtcatcaccaccaccctcagcttctgaatcaccaccacctccgtcagattccacttccacatcacccaatgctcctgaggcgtctcctcctacctcatccaaatttaatcctccaccaccagtttcctcaggatcaccttcattatctgctggaaaattttctcctcctccaccttcagaaaaatcagcaccttttgaaaaaccagacggtgcacaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="96779" stop="95705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96592" g_stop="96581" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96580" i_stop="96475" i_length="106">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96474" g_stop="96005" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="482" r_length="470" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U600046" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96592" e_stop="96581"/>
          <exon e_start="96474" e_stop="96005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCTTTCAGGTAAATTTCTTCTCTTTCATGTCCAAATTGAATCATTTTTATTACTATATGTTGTGTAGGATCTGTAAAGATAACATTTTTTTTTTCGTTTTTCATGGAAATATAGGAGCATTGAAGATTTGTTGAGACGAGCAGCTAACGGGAGAGGTTGAATTTCTGGGCTGCCGGAAATTTCACCGTTGTTGAAATATGCAATCACCTCCTAGTACTGCTTCGTCCGACAAAGATGAGACTACTTCCTCTTCTCCTTCTAATTCCTCCCCGTCTCCCCCACCACCAGCTCCGCCTACCTCCCCACCCCCAGAATCTCCTCCACCTGTAAATTCTCCGCCACCGTCAAAGGAATCTTCTCCTCCGTCATCACCACCACCCTCAGCTTCTGAATCACCACCACCTCCGTCAGATTCCACTACCACGTCACTCAATGCTCCTGAGGCGTCTCCTCCTACCTCATCCAAATTTAATCCTCCACCACCAGTTTCCTCAGGATCACCTTCATTATCTGCTGGAAAATTATCTCCTCCTCCACCTTCAGAAAAATCAGCACCTTTTGAAAAACCAGACGGTGCACAACAT</genome_strand>
        <mrna_strand>TACATCTTTCAG..........................................................................................................GAGCATTGAAGATTTGTTGAGACGAGCAGTTAACGGGAGAGGTTGAATTTCTGGGCTGCCGGAAATTTCACCGTTGTTGAAATATGCAATCACCTCCTAGTACTGCTTCGTCCGACAAAGATGACACTACTTCCTCCTCTCCTTCTAATTCCTCCCCGTCTCCCCCACCACCAGCTCCGCCTACCTCCCCACCCCCAGAATCTCCTCCACCTGTAAATTCTCCGCCGCCGTCAAAGGAATCTTCTCCTCCGTCATCACCACCACCCTCAGCTTCTGAATCACCACCACCTCCGTCAGATTCCACTTCCACATCACCCAATGCTCCTGAGGCGTCTCCTCCTACCTCATCCAAATTTAATCCTCCACCACCAGTTTCCTCAGGATCACCTTCATTATCTGCTGGAAAATTTTCTCCTCCTCCACCTTCAGAAAAATCAGCACCTTTTGAAAAACCAGACGGTGCACAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598849" ref_strand="+" ref_description="SGN-U598849 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agttccaaactgtaagtattatcgtcaaaagagaacctgactatacaattccaacagtttgcacttgtttagaaccaaaactgaaaactagcagcaagaaagtaaaatgactggaggacaaaaacaaatcatactactagcccaaatgaaacaatcatcaagggcactacttcatattctccagatccttgtaacataacgaggcagcttatgtaggctgagaacctctcatcagtattcgtcccagactccacactgttctgctcccttgggttattctccagcattgtgtaccataacaaggctgtttatgtagggtaagaacctcttatcagtatccactcgtcccggactctgcagtgtctcaaccttctggtccctaaggtgataaaagtatattgttgtgtccgtgtggatcaccacagtatcactgacagtacaaggtagtacctcacaacacttctcattgggtattccaagcacttgagtacgaggcttcttgctaccaagatttacactgacactgcgcttcaggcccatgtctacacctccatagatgtctattatgaaaacacttccacagtcattataagcagtaacatagcaaacctcatctcctatctgcgtcaaggcaccacgttgtccagattgaagaacaggtaaatgtagaactgctggaatctcatttttcacatcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="96775" stop="98075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97075" g_stop="97775" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U598849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97075" e_stop="97775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCAAACTGTAAGTATTATCGTCAAAAGAGAACCTGACTATACAATTCCAACAGTTTGCACTTGTTTAGAACCAAAACTGAAAACTAGCAGCAAGAAAGTAAAATGACTGGAGGACAAAAACAAATCATACTACTAGCCCAAATGAAACAATCATCAAGGGCACTACTTCATATTCTCCAGATCCTTGTAACATAACGAGGCAGCTTATGTAGGCTGAGAACCTCTCATCAGTATTCGTCCCAGACTCCACACTGTTCTGCTCCCTTGGGTTATTCTCCAGCATTGTGTACCATAACAAGGCTGTTTATGTAGGGTAAGAACCTCTTATCAGTATCCACTCGTCCCGGACTCTGCAGTGTCTCAACCTTCTGGTCCCTAAGGTGATAAAAGTATATTGTTGTGTCCGTGTGGATCACCACAGTATCACTGACAGTACAAGGTAGTACCTCACAACACTTCTCATTGGGTATTCCAAGCACTTGAGTACGAGGCTTCTTGCTACCAAGATTTACACTGACACTGCGCTTCAGGCCCATGTCTACACCTCCATAGATGTCTATTATGAAAACACTTCCACAGTCATTATAAGCAGTAACATAGCAAACCTCATCTCCTATCTGCGTCAAGGCACCACGTTGTCCAGATTGAAGAACAGGTAAATGTAGAACTGCTGGAATCTCATTTTTCACATCGAATG</genome_strand>
        <mrna_strand>AGTTCCAAACTGTAAGTATTATCGTCAAAAGAGAACCTGACTATACAATTCCAACAGTTTGCACTTGTTTAGAACCAAAACTGAAAACTAGCAGCAAGAAAGTAAAATGACTGGAGGACAAAAACAAATCATACTACTAGCCCAAATGAAACAATCATCAAGGGCACTACTTCATATTCTCCAGATCCTTGTAACATAACGAGGCAGCTTATGTAGGCTGAGAACCTCTCATCAGTATTCGTCCCAGACTCCACACTGTTCTGCTCCCTTGGGTTATTCTCCAGCATTGTGTACCATAACAAGGCTGTTTATGTAGGGTAAGAACCTCTTATCAGTATCCACTCGTCCCGGACTCTGCAGTGTCTCAACCTTCTGGTCCCTAAGGTGATAAAAGTATATTGTTGTGTCCGTGTGGATCACCACAGTATCACTGACAGTACAAGGTAGTACCTCACAACACTTCTCATTGGGTATTCCAAGCACTTGAGTACGAGGCTTCTTGCTACCAAGATTTACACTGACACTGCGCTTCAGGCCCATGTCTACACCTCCATAGATGTCTATTATGAAAACACTTCCACAGTCATTATAAGCAGTAACATAGCAAACCTCATCTCCTATCTGCGTCAAGGCACCACGTTGTCCAGATTGAAGAACAGGTAAATGTAGAACTGCTGGAATCTCATTTTTCACATCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565261" ref_strand="+" ref_description="SGN-U565261 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157348156|emb|CAO22866.1| (e_value=4e-39) unnamed; ">
      <seq>tcgagggtcgttagggttttccggcgattctttgccattctttcttggttttccggcgactttactcaccagaattttagcgcattgcacttttacagtgaaatttcttgaaacccaagttatcatcaagggctctgctgatagaaaaatggcatgttctgggattgacatgctgaatgatgaatctttggaggaggacatgtattctgactcctctgagttttacgttgctgttaaacctcagggtggtgggattgactcgttagcagagtttgacttgagaactgctgcttataaggtggaggaagggaacaatggttctaaatatcctgtcgaaatcataatgagagtgaacatgacgatcaaagatgtagcgaagagacatatactgcctttcctccccgctaaatcactgatgaagcttcgggcagtctccaaagaatggaatcagtggatagctagtccattacttgcgtacaatcaaagttcaacatttcagaagctttcaggctacttttatcaaagactggataatgtagatgatcctcctatacttttgtctctgcatcgttctgcaattggagtcccgagtccttcacttcgtttcttgcctgtgaaggttaaagtactaagttctagcagcgggttgctcctttgtcaagggaaggacagctattatgtttgcaatcctgcaaccaaagactggaaaaagcttcctcctcctcaatattaccacggatctgatcctgctgttgctcttgcatttgatcctcagttcaatattgaatcattttatcgtgtggtcgctgcagtccctgttcttgataatccagttgtatgctttgagatttactgttctgaatcagattcatggaggtgctctccttcagactgtctagagctggaaaatacaagacttgcaggtggaggatattatatgaagggggtggcttactggaggaatacatcatcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="100237" stop="97485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99944" g_stop="99851" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99850" i_stop="99510" i_length="341">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99509" g_stop="99459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="144" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99458" i_stop="99368" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99367" g_stop="99250" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="262" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99249" i_stop="98500" i_length="750">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98499" g_stop="97785" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="977" r_length="715" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U565261" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99944" e_stop="99851"/>
          <exon e_start="99509" e_stop="99459"/>
          <exon e_start="99367" e_stop="99250"/>
          <exon e_start="98499" e_stop="97785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGTCGTCGTTAGGGTTTTCCGGCGATTCTTTGCCATTCTTTCTTGGTTTTCCGGCGACTTTACTCACCAGAATTTTAGCGCATTGCACTTTGTGAGTTCTTCTTCTTCTTAATTCTTCTGTTGCTTACCGGTACTGATCATCACATGCTGTTGTTTATTTATTTAAAAAAAAAATAAGAAAAAATACTGAATTTCTCCGTTTTACAATTGCTGATCAATTTTGTCATGAAAAGATAGGATCATTTTCGTTTTTCTTTTGATCCAATTTTTGGTAGTGTTGTTGTTTCCTTTACATCTTCGAATGTATCGTTTTATGTTCTTGCTTTCTTGAGGAAATAAATGTAGCTATATTTAGTGCTCTATTCAATCTGGGGTTTTCTTGTTTCTTCTTTTTTTCGTTACTAATATTTTTCGTGATTTTCTCATTTACAGTACAGTGAAATTTCTTGAAACCCAAGTTATCATCAAGGGCTCTGCTGATAGGTGATACGGAGATGAATTTCTTGATTTTCTCATTTTCATATTATTATTTTTGTTAAGTAATAGACGCTGTAATTTTTAAATGTCTATGCAGAAAAATGGCATGTTCTGGGATTGACATGCTGAATGATGAATCTTTGGAGGAGGACATGTATTCTGACTCCTCTGAGTTTTACGTTGCTGTTAAACCTCAGGGTGGTGGGATTGACTCGGTATAGTTTTCTTCCCTTTTATTTCGCTTTCTTGTTTCTTGTTTCAATTGTTCAACAGTTCTTTTTTTTTTATCATCGTCTCTTCTATCCAACTTTCTAATGTTACTTTTTACTTGCTTTGGGATGTTAAGGTCTTGAAATCTCAATAGCAGAACTTGAAGTTTCTTGTTGAACGTTAATGTCCTTTTTTTGTGTCTTAAATGACTTATACTGAACATGACTCTATACTTTGCGTTTTCATGTTTTTTATTTCTAAGTGGTGGTTTCTAAGATGTCCATTTCGAAATTGGCAGATGGCAGATGTATTAAAGTAGTGTAAGTTAGTCCTCATAAATGTCCTTGGATCTCAGTTCTGCCCTATTCCGGTTTGCCTAAAGTTACAATTGTAACAATGACCTCAATTCCAAGCTAGTTTGGGCCAAATGTACTAATCCACTATCCTTTTATTTTCACAATGCCATGGTGTCATGGACAATCTCTGCTTCCCTGTTTTGCTAGGAAGCTACTTCATAAGATCTTGCTTTCTAGTCCTGATTTTTCTATTGTTCCTTTTCCCATTTTTCTTACATTAATGAATATATTTACTTTTTAAATGAGTCTTTCTGAGTGAACAACATGCCTAGCCTAAAAAGAGGAGTGGATACAAATATAGATCATCCTAACTAGTATGATATTGCAGCATAGTTAGTATATCGCTCTTGCTAATGATTACTGTACTACTTTTAACAAGTCTTTCGGTTTGGATTGCAGTTAGCAGAGTTTGACTTGAGAACTGCTGCTTATAAGGTGGAGGAAGGGAACAATGGTTCTAAATATCCTGTCGAAATCATAATGAGAGTGAACATGACGATCAAAGATGTAGCGAAGAGACATATACTGCCTTTCCTCCCCGCTAAATCACTGATGAAGCTTCGGGCAGTCTCCAAAGAATGGAATCAGTGGATAGCTAGTCCATTACTTGCGTACAATCAAAGTTCAACATTTCAGAAGCTTTCAGGCTACTTTTATCAAAGACTGGATAATGTAGATGATCCTCCTATACTTTTGTCTCTGCATCGTTCTGCAATTGGAGTCCCGAGTCCTTCACTTCGTTTCTTGCCTGTGAAGGTTAAAGTACTAAGTTCTAGCAGCGGGTTGCTCCTTTGTCAAGGGAAGGACAGCTATTATGTTTGCAATCCTGCAACCAAAGACTGGAAAAAGCTTCCTCCTCCTCAATATTACCACGGATCTGATCCTGCTGTTGCTCTTGCATTTGATCCTCAGTTCAATATTGAATCATTTTATCGTGTGGTCGCTGCAGTCCCTGTTCTTGATAATCCAGTTGTATGCTTTGAGATTTACTGTTCTGAATCAGATTCATGGAGGTGCTCTCCTTCAGACTGTCTAGAGCTGGAAAATACAAGACTTGCAGGTGGAGGATATTATATGAAGGGGGTGGCTTACTGGAGGAATACATCATCGAATG</genome_strand>
        <mrna_strand>TCGAG-GGTCGTTAGGGTTTTCCGGCGATTCTTTGCCATTCTTTCTTGGTTTTCCGGCGACTTTACTCACCAGAATTTTAGCGCATTGCACTTT.....................................................................................................................................................................................................................................................................................................................................................TACAGTGAAATTTCTTGAAACCCAAGTTATCATCAAGGGCTCTGCTGATAG...........................................................................................AAAAATGGCATGTTCTGGGATTGACATGCTGAATGATGAATCTTTGGAGGAGGACATGTATTCTGACTCCTCTGAGTTTTACGTTGCTGTTAAACCTCAGGGTGGTGGGATTGACTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCAGAGTTTGACTTGAGAACTGCTGCTTATAAGGTGGAGGAAGGGAACAATGGTTCTAAATATCCTGTCGAAATCATAATGAGAGTGAACATGACGATCAAAGATGTAGCGAAGAGACATATACTGCCTTTCCTCCCCGCTAAATCACTGATGAAGCTTCGGGCAGTCTCCAAAGAATGGAATCAGTGGATAGCTAGTCCATTACTTGCGTACAATCAAAGTTCAACATTTCAGAAGCTTTCAGGCTACTTTTATCAAAGACTGGATAATGTAGATGATCCTCCTATACTTTTGTCTCTGCATCGTTCTGCAATTGGAGTCCCGAGTCCTTCACTTCGTTTCTTGCCTGTGAAGGTTAAAGTACTAAGTTCTAGCAGCGGGTTGCTCCTTTGTCAAGGGAAGGACAGCTATTATGTTTGCAATCCTGCAACCAAAGACTGGAAAAAGCTTCCTCCTCCTCAATATTACCACGGATCTGATCCTGCTGTTGCTCTTGCATTTGATCCTCAGTTCAATATTGAATCATTTTATCGTGTGGTCGCTGCAGTCCCTGTTCTTGATAATCCAGTTGTATGCTTTGAGATTTACTGTTCTGAATCAGATTCATGGAGGTGCTCTCCTTCAGACTGTCTAGAGCTGGAAAATACAAGACTTGCAGGTGGAGGATATTATATGAAGGGGGTGGCTTACTGGAGGAATACATCATCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589792" ref_strand="+" ref_description="SGN-U589792 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|9858770|gb|AAG01117.1|AF273333_2 (e_value=6e-98) BAC19.2; ">
      <seq>gccaaaatcaaatgcttatcatggatcagatccagcaattgtgctcttatttgaaccatcattgctcaactttgtagcagagtacaaaattatatgtgcttttccatcgacagattttgacaaggcaactgaatttgatatatattactcaagagagggttgttggaaaattgctgaggagatgtgctttggaagtagaacaatatttccaaaatcagggatccatgtgaatggcgttgtttactggatgacaagtaagaatattcttgcttttgatctaacaaagggtaggacacagctccttgaaagctatggcactcgtgggttcttggggacttttagtggaaagctctgtaaggttgatgtcagtggtgatataatcagcttaaacgttttggctaatacccactcaaatacaatgcaaataggtagccaaatcaaaatgtggtcagagaaagagattgttgttcttgacagtgaaattgttggggatggtgcagcaagggaccacacagttttacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="105435" stop="104308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105136" g_stop="104608" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U589792" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105136" e_stop="104608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATCAAATGCTTATCATGGATCAGATCCAGCAATTGTGCTCTTATTTGAACCATCATTGCTCAACTTTGTAGCAGAGTACAAAATTATATGTGCTTTTCCATCGACAGATTTTGACAAGGCAACTGAATTTGATATATATTACTCAAGAGAGGGTTGTTGGAAAATTGCTGAGGAGATGTGCTTTGGAAGTAGAACAATATTTCCAAAATCAGGGATCCATGTGAATGGCGTTGTTTACTGGATGACAAGTAAGAATATTCTTGCTTTTGATCTAACAAAGGGTAGGACACAGCTCCTTGAAAGCTATGGCACTCGTGGGTTCTTGGGGACTTTTAGTGGAAAGCTCTGTAAGGTTGATGTCAGTGGTGATATAATCAGCTTAAACGTTTTGGCTAATACCCACTCAAATACAATGCAAATAGGTAGCCAAATCAAAATGTGGTCAGAGAAAGAGATTGTTGTTCTTGACAGTGAAATTGTTGGGGATGGTGCAGCAAGGAACCACACAGTTTTACATGTTGAC</genome_strand>
        <mrna_strand>GCCAAAATCAAATGCTTATCATGGATCAGATCCAGCAATTGTGCTCTTATTTGAACCATCATTGCTCAACTTTGTAGCAGAGTACAAAATTATATGTGCTTTTCCATCGACAGATTTTGACAAGGCAACTGAATTTGATATATATTACTCAAGAGAGGGTTGTTGGAAAATTGCTGAGGAGATGTGCTTTGGAAGTAGAACAATATTTCCAAAATCAGGGATCCATGTGAATGGCGTTGTTTACTGGATGACAAGTAAGAATATTCTTGCTTTTGATCTAACAAAGGGTAGGACACAGCTCCTTGAAAGCTATGGCACTCGTGGGTTCTTGGGGACTTTTAGTGGAAAGCTCTGTAAGGTTGATGTCAGTGGTGATATAATCAGCTTAAACGTTTTGGCTAATACCCACTCAAATACAATGCAAATAGGTAGCCAAATCAAAATGTGGTCAGAGAAAGAGATTGTTGTTCTTGACAGTGAAATTGTTGGGGATGGTGCAGCAAGGGACCACACAGTTTTACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568633" ref_strand="+" ref_description="SGN-U568633 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|9858771|gb|AAG01118.1|AF273333_3 (e_value=3e-128) BAC19.3; (*ATH) AT4G36650.1 (e_value=4e-82) | Symbol: None | transcription factor IIB (TFIIB) family protein, contains Pfam domain, PF00382: Transcription factor TFIIB repeat | chr4:17283288-17285532 REVERSE | Aliases: AP22.23, AP22_23; (*SWP) sp|P62915|TF2B_MOUSE (e_value=2e-16) Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b; ">
      <seq>ctgtatgcttattttttgcaactgtgtggaaatatcagttgcggccaatttacctcagaaggaaatcgggaagtacataaagattcttggagaagcgttacaactcagtcaacctatcaatagtaattctatatcagtccatatgccaaggttttgtacactccttcagctgaataaatctgctcaggagctggcgactcacattggtgaagtaatcatcaataaatgcttttgcactagaaggaatccaattagcatctctgctgctgctatatatttggcatgtcaactagaggacaagcggaagacccaggctgaaatatgtaaggtgactggactaactgaagttactcttcgtaaggtgtacaaggagcttttggagaactgggatgatctcctaccatcaagttataaaccagttgttccaccagagaaggcttttccttcagctaccattgctacaggccgttcatcaacaccgagagttgatatagttgagggaacttcatctgagagggacaagccagttaaaccagtcgactcattagatatatctcctcagatcagaggcaaggaggactccgacagcaaagataatattaatacaactcaattatcttggccaccaccattttggaagcctcaagctcctgctgaaggtggtgttaaatcagctacagataagagtcagaatgctactgaagaaatggagattgatttataatataaatctcaccttttcacgaatagcaaaaactgcttctagttctttgatgtcagccagttctgttatcacctgtgtcaactgcaacttcaacttcagtgttctgaatctccagcctgctgtatcacctggctcttttgcaatgttcaagcgctactaccacaaaaggttgcatataataatcatgtagatagaggattcattaagtaaagttagaatgaggagccatatgtggctggataataagcaattactttggttagaagatggggggcctataagagggagaaatagtttattcaaaaaggcgtcgcataaatttcagttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="109904" stop="107912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109604" g_stop="109577" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109576" i_stop="109491" i_length="86">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109490" g_stop="109332" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="187" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109331" i_stop="109079" i_length="253">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109078" g_stop="108212" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="1054" r_length="867" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U568633" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1054</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109604" e_stop="109577"/>
          <exon e_start="109490" e_stop="109332"/>
          <exon e_start="109078" e_stop="108212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATGCTTATTTTTTGCAACTGAGTGGTAGTCTGAGATGCATTTCATAAAAAAACTTCCATGAACTTTCTGATTTTTCTGTGCTTTTCTAATTTGGATTAATTGATAACTAGGAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTCCATATGCCAAGGTTTTGTACACTCCTTCAGCTGAATAAATCTGCTCAGGTACCTAACTGGTTCATTCAGAAGTTAGTAATCAGTTAACTTAGATAATTGTATATACTATTGCCATTAACAAAAAATCAATAGCCGATAAAAACTCTATTTCCCAATCAATTTGTTTGAGACTGCGAATAAGTCATGTCATGTTGGTCCTATGTTTTTACTCAATTTCATCAAGAAGTTATTGTTTAGTTTACTTACGTTCCTCTGTATTTACTAAATCTTTTGACTGTATGTTGCACAACCATTGCATCAGGAGCTGGCGACTCACATTGGTGAAGTAATCATCAATAAATGCTTTTGCACTAGAAGGAATCCAATTAGCATCTCTGCTGCTGCTATATATTTGGCATGTCAACTAGAGGACAAGCGGAAGACCCAGGCTGAAATATGTAAGGTGACTGGACTAACTGAGGTTACTCTTCGTAAGGTGTACAAGGAGCTTTTGGAGAACTGGGATGATCTCCTACCATCAAGTTATAAACCAGTTGTTCCACCAGAGAAGGCTTTTCCTTCAGCTACCATTGCTACAGGCCGTTCATCAACACCGAGAGTTGATATAGTTGAGGGAACTTCATCTGAGAGGGACAAGCCAGTTAAACCAGTCGACTCATTAGATATATCTCCTCAGATCAGAGGCAAGGAGGACTCCGACAGCAAAGATAATATTAATACAACTCAATTATCTTGGCCACCACCATTTTGGAAGCCTCAAGCTCCTGCTGAAGGTGGTGTTAAATCAGCTACAGATAAGAGTCAGAATGCTACTGAAGAAATGGAGATTGATTTATAATATAAATCTCACCTTTTCACGAATAGCAAAAACTGCTTCTAGTTCTTTGATGTCAGCCAGTTCTGTTATCACCTGTGTCAACTGCAACTTCAGCTTCAGTGTTCTGAATCTCCAGCCTGCTGTATCACCTGGCTCTTTTGCAATGTTCAAGCGCTACTACCACAAAAGGTTGCATATAATAATCATGTAGATAGAGGATTCATTAAGTAAAGTTAGAATGAGGAGCCATATGTGGCTGGATAATAAGCAATTACTTTGGTTAGAAGATGGGGGGCCTATAAGAGGGAGAAATAGTTTATTCAAAAAGGCCTCGCATAAATTTCAGTTAGT</genome_strand>
        <mrna_strand>CTGTATGCTTATTTTTTGCAACTGTGTG......................................................................................GAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTCCATATGCCAAGGTTTTGTACACTCCTTCAGCTGAATAAATCTGCTCAG.............................................................................................................................................................................................................................................................GAGCTGGCGACTCACATTGGTGAAGTAATCATCAATAAATGCTTTTGCACTAGAAGGAATCCAATTAGCATCTCTGCTGCTGCTATATATTTGGCATGTCAACTAGAGGACAAGCGGAAGACCCAGGCTGAAATATGTAAGGTGACTGGACTAACTGAAGTTACTCTTCGTAAGGTGTACAAGGAGCTTTTGGAGAACTGGGATGATCTCCTACCATCAAGTTATAAACCAGTTGTTCCACCAGAGAAGGCTTTTCCTTCAGCTACCATTGCTACAGGCCGTTCATCAACACCGAGAGTTGATATAGTTGAGGGAACTTCATCTGAGAGGGACAAGCCAGTTAAACCAGTCGACTCATTAGATATATCTCCTCAGATCAGAGGCAAGGAGGACTCCGACAGCAAAGATAATATTAATACAACTCAATTATCTTGGCCACCACCATTTTGGAAGCCTCAAGCTCCTGCTGAAGGTGGTGTTAAATCAGCTACAGATAAGAGTCAGAATGCTACTGAAGAAATGGAGATTGATTTATAATATAAATCTCACCTTTTCACGAATAGCAAAAACTGCTTCTAGTTCTTTGATGTCAGCCAGTTCTGTTATCACCTGTGTCAACTGCAACTTCAACTTCAGTGTTCTGAATCTCCAGCCTGCTGTATCACCTGGCTCTTTTGCAATGTTCAAGCGCTACTACCACAAAAGGTTGCATATAATAATCATGTAGATAGAGGATTCATTAAGTAAAGTTAGAATGAGGAGCCATATGTGGCTGGATAATAAGCAATTACTTTGGTTAGAAGATGGGGGGCCTATAAGAGGGAGAAATAGTTTATTCAAAAAGGCGTCGCATAAATTTCAGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567161" ref_strand="+" ref_description="SGN-U567161 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|9858771|gb|AAG01118.1|AF273333_3 (e_value=1e-97) BAC19.3; (*ATH) AT4G36650.2 (e_value=6e-79) |; ">
      <seq>cctttttcactaattgctatttaaatacttgttgtggttttttttacagcttttgaaacctgcaattccccacgcctagctagttgaaatcagaaaaatgcggtgtccgtactgctcggcggagcaagggcggtgtaccagcagcaccagtggcagaccgataaccgagtgcacatcctgcggccgggtagtggaggagcgattaacccaatcccaccatctttttcatacccgtgcccaagattctcctctgtgcctggctacttctgatctccccactcttcccatctccgccactaacgacgatgaagacccatttgaacccactggtttcatcaccactttctctacttggtctctcgaaccctacccagtatttgcccaatcctccatttcattcgccggtcaccttgcagagctcgagcgggtcctcgaaatgacgtcaacttcctccagttcgtcctcttcttctgtcgtggtggaaaatctccgggcttatttgcagattattgatgtggcttctattctgcgactggattctgatatttcggaccacgcgtttcagctcttcagggattgttcttcagcaacttgcttaaggaatcggagtgttgaagcgcttgctactgctgctcttgtgcacgctatcagggaagcccaagagccgagaactctccaggtcaactgaacatttggcttttttcgcctcttccactggatgcttattttttgcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="111956" stop="109281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111655" g_stop="111037" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="679" r_length="619" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111036" i_stop="109640" i_length="1397">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109639" g_stop="109581" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="738" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U567161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111655" e_stop="111037"/>
          <exon e_start="109639" e_stop="109581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTCCCCACGCCTAGCTAGTTGAAATCAGAAAAATGCGGTGTCCGTACTGCTCGGCGGAGCAAGGGCGGTGTACCAGCAGCACCAGTGGCAGACCGATAACCGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCTGATCTCCCCACTCTTCCCATCTCCGCCACTAACGACGATGAAGACCCATTTGAACCCACTGGTTTCATCACCACTTTCTCTACTTGGTCTCTCGAACCCTACCCAGTATTTGCCCAATCCTCCATTTCATTCGCCGGTCACCTTGCAGAGCTCGAGCGGGTCCTCGAAATGACGTCAACTTCCTCCAGTTCGTCCTCTTCTTCTGTCGTGGTGGAAAATCTCCGGGCTTATTTGCAGATTATTGATGTGGCTTCTATTCTGCGACTGGATTCTGATATTTCGGACCACGCGTTTCAGCTCTTCAGGGATTGTTCTTCAGCAACTTGCTTAAGGAATCGGAGTGTTGAAGCGCTTGCTACTGCTGCTCTTGTGCACGCTATCAGGGAAGCCCAAGAGCCGAGAACTCTCCAGGTATGTTAAATTGGTAAATGGATGCCATAAATACTATGCCAAAAATCTCAATAGCAATAACATATTAGCTAATATTTCAATTCAAAAACTCAAAATAGATAGTACATGTTAAAAGTCTAGAACTTGAATGAGAAAAAAAAAGAATATAAGTCAAAACAGAGGTAGAAGTGACTCTGAAATCTGAGGAAGAACAAGGAAAAGAACTGAGGAAGAAGAAGAAAAGAAGAAATATGTATTGATTGGACTTTGGAGTTGCCAGAGAAGTCTGGCTGGCCGTCGGAGGAGTGTAGTCGAAAACCCTAAATGTACCTTTTAGCTTTTAAAATCCTAAATTTGTCGCCTTTTTTAACGAAAATACAAAATGCGACGCCTTTCTCGCCTCTCGCCTTTGTCGTAATGGCGTCGCCTGTCGAAGATGGCCTCGCCACAAAGCTAAAAAGCAATGAAGGGTCGCCTCGCCTCTCGCCATTGGCGACGAGGCAATCGCCTTTCACAACACTGGTAATTGCAGCTATGTAACTTCGTTTTTCTCAGTGCACCAACTGATTCAGCTGAACCTTTGTGATTGTAGTTTGTTTCGTATTGCTATTTCCTTTCTTGTTCTCTTGTTCAAGCTTATTTCCATCCTAGGGTTTATTCTAATGTTGATAACCTTTTGCCTTCTCCAAACCTCTCTTTTTCACTTACTACTTTTCCTCTTTCTTATCTTAAGTGGAAGATACCCTATATGTAGAAAATCATGGAAGGGAAAAAACAAAGAACAAAGAGGGAAATAGAAGAGAAAAGACAGGAAACTTTTGGTGGGCTGTAAGGGAACTTCTTCCTCCTCACCCCCCCCCCCTCACCCAGTCCCCCACCCAATGTTCTTTTCCTGTGTTTTTCTATGAGGGAACTCTTGTACTTCTTTCCTCTTCCCTTTCCTTGTTTCCTTTATTAGTGTGCCGAACCTGGAGTTGCAGTATAGTTGCATCGATGATATGCCCTGGGATTGACCATCAACAATAAATTTGCTGCTAACTTTAAAGTGGTTTAGAGATACTACCCATTTGATTGCACTTAAACCCAAGTAAATGGTCAATAACCTTAAGCTCACAATTTGAATTTTGTTTCTTGGTCTATTTTAAACATATACTCCGTGAAATAGAACAGTGCTTCAAAATAGCAATGACAATGTGGAAAGCAACATTCATGTATTGAATGTGAAGTACTGCCATTGTGTTACTATTGTCAATTGTCATTCTTGTAGTAAGTGAGCTAGAGAGAGAGAGAGAGAGGGGTCTCAATATTGCTAACTTGTCATTTTTTATATTATGCTAGTGTGTCTTTGTCAATGGTTGTTGATTGTAATTTGTATACCATGTTTAATTTGAAATAATCAGACATTCTTCCAATTGTAGGTCAACTGAACATTTGGCTTTTTTCGCCTCTTCCACTGGATGCTTATTTTTTGCAACTG</genome_strand>
        <mrna_strand>TGCAATTCCCCACGCCTAGCTAGTTGAAATCAGAAAAATGCGGTGTCCGTACTGCTCGGCGGAGCAAGGGCGGTGTACCAGCAGCACCAGTGGCAGACCGATAACCGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCTGATCTCCCCACTCTTCCCATCTCCGCCACTAACGACGATGAAGACCCATTTGAACCCACTGGTTTCATCACCACTTTCTCTACTTGGTCTCTCGAACCCTACCCAGTATTTGCCCAATCCTCCATTTCATTCGCCGGTCACCTTGCAGAGCTCGAGCGGGTCCTCGAAATGACGTCAACTTCCTCCAGTTCGTCCTCTTCTTCTGTCGTGGTGGAAAATCTCCGGGCTTATTTGCAGATTATTGATGTGGCTTCTATTCTGCGACTGGATTCTGATATTTCGGACCACGCGTTTCAGCTCTTCAGGGATTGTTCTTCAGCAACTTGCTTAAGGAATCGGAGTGTTGAAGCGCTTGCTACTGCTGCTCTTGTGCACGCTATCAGGGAAGCCCAAGAGCCGAGAACTCTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACTGAACATTTGGCTTTTTTCGCCTCTTCCACTGGATGCTTATTTTTTGCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586799" ref_strand="+" ref_description="SGN-U586799 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|156070789|gb|ABU45201.1| (e_value=1e-17) unknown; (*ATH) AT4G36650.2 (e_value=1e-13) |; ">
      <seq>agggcggcgtaccagcagcaccaggggcataccgatcaccgagtgcacatcctgcggccgggtagtggaggagcgattaacccaatcccaccatctttttcatacccgagcccaagattcttctctgagcctggctacttctgatctcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="111889" stop="111139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111589" g_stop="111439" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U586799" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111589" e_stop="111439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCGGTGTACCAGCAGCACCAGTGGCAGACCGATAACCGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCTGATCTCCCC</genome_strand>
        <mrna_strand>AGGGCGGCGTACCAGCAGCACCAGGGGCATACCGATCACCGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGAGCCCAAGATTCTTCTCTGAGCCTGGCTACTTCTGATCTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567388" ref_strand="+" ref_description="SGN-U567388 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|9858772|gb|AAG01119.1|AF273333_4 (e_value=2e-60) BAC19.4; (*ATH) AT5G65650.1 (e_value=6e-45) | Symbol: None | expressed protein | chr5:26256728-26258741 FORWARD | Aliases: K21L13.17, K21L13_17; ">
      <seq>tgaaaatagattatccaggagaatcccagaatagagatgcaatcaaattcaaataaaccaaacgtacatataaaagggaaaagggaaaaggcaaaaaggaattttatttgttcaaaaaagagaaagaaggaatgagggatgacgatcttcccatatcaacgccaacagcaccttcatcgtcgttcacgacttcgaagaaggaaacttcctattttgccattttcggtagaggtcgttataagttttgggcctttgccgctatctcattgttagctttgtggtctatgttcaccggaactgttaccctccgttggtccgccggtaacctcaacgccatatccgatgacatcgacattcccctccccgaagatcttgacgttctcgaaatggaagaaagggagaagttagtgaagcatatgtgggatgtatacacaaacagccgtgggatcaaattgttaaagttttggcaggaagcatttgaggctgcctatgaggagttagccagtgacgtccctggagtcccagaggatgccctttctgagattgctaagatgtctgtacgctacattcctattgaatcaccacctcttcattcgtcgggaattcgtgaattaagtctaaggcaaatgaagagggagcaaacaactgcaacagggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="112638" stop="117532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112938" g_stop="113320" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113321" i_stop="113483" i_length="163">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113484" g_stop="113699" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="599" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113700" i_stop="117173" i_length="3474">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117174" g_stop="117232" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="658" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U567388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112938" e_stop="113320"/>
          <exon e_start="113484" e_stop="113699"/>
          <exon e_start="117174" e_stop="117232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATAGATTATCCAGGAGAATCCCAGAATAGAGATGCAATCAAATTCAAATAAACCAAACGTACATATAAAAGGGAAAAGGGAAAAGGCAAAAAGGAATTTTATTTGTTCAAAAAAGAGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACGTTCTCGTCCGTACATTTCCCATTTTCAAACCTTTTGTTTTTTTAATTTATGTCGTCCTATTGGAAATGCTGGGGCTAGTTTGGAATTGAGTGATTGGATTACGTACTTATTAATAAATTGATATTTTTCATTGGTTGATTTTCGGAAATTGTTATGAATTTTTGGCAGGAAATGGAAGAAAGGGAGAAGTTAGTGAAGCATATGTGGGATGTATACACAAACAGCCGTGGGATCAAATTGTTAAAGTTTTGGCAGGAAGCATTTGAGGCTGCCTATGAGGAGTTAGCCAGTGACGTCCCTGGAGTCCCAGAGGATGCCCTTTCTGAGATTGCTAAGATGTCTGTACGCTACATTCCTATTGAATCACCACCTCTTCATTCGTCGGTTAGCTCTCTCTTTCATTTTTGAATCCAATTCTCATGGCGATTTGGGTGTTTTTTAGACAAGCAATAAGCCTCGTAGCGCTCTTGTGATCTTTACCACTGTTAATTGATTGTTACAATGTGAATTGTCATTTTAACGGTGTGCTGATAGAAGCTTTAACAACAATAGCAACCATACTTCAAAGTCTCTGTTTGATTGGGGTTTACTATATAGATTTTTCATTTTTCGTTTTGACTCGATTTGTTCATGTTTCATTTCAATACTCTTATGATTTCTTTGTAAGACAAATTTGCAGCTCTCTAACCCTATTGTATTTATCTTACTTTTATACAAATCTCTAAATGTATATAGAAGATGTCCAGCATACTCCAGACTGTAAGTGTATCAACATTACCAAGTCTTAATCTCGACTAGTTGGCATTGCTCAAATGATCTTTTGCTTTCATTGTGTTTTGCTCTTCACCAAGTCTAGCTAACTTTCTTCCATGTGATTTTAGGATTACCTCATTTCCTTTAAAATAACTTCAATCATTATTTGGTAATGCTGACAGATCAGTGCACTTAAAGATCTACCTAAACTCTTTTATGAATCTTTTCTTTCAAGTGTCCTATTTTAATTCTTAGACTTACTTTTTCATGTATTGCACCATTCTCTTAGATTACTAGGCTAGATCTCTGAATTGTGTGCATTTAGACATCACACCTGTTGAATCTCAACTTCATTTGTGCTGGCAGAGTTTATGTAAAAAAAAATAACTAGAATTTGCTTGTATGTTCCCCTTGTCATCTTTAGTTTCGTTATTTTGGCGATACTATATACTTAGAATGTTGCAAATGCTTCACTTGTCTATCATCACTCATAACAATGAATTTTAAGTAGTTTTTCCTTGAACTTTAAGGTATATGGTAAGTCCAAGTCAAAGGAAACTGAAAAATGCAACATAATTTGGTCTATATTCTTTGCAATGCAACTTTTAGGTAGTTGCCATTTCTTAAACTTTTCACAATCCACTAACTTAATCTGATGGTTGTGTGAGTTTATTATATTTAAGAAGATATCATAATGAACTGAAGCACATTGGGAAGTATACTTTTCTGCTCTTTGGCTCACAACTATCATAATGTCGACTTGGTCAGAAATAATACACTGAGTAGACTGTTCTATTTGGTACTTCTTAGAAAAAACATAATTTGTTTCAGATTAGGTAAGGTAGTATTTGACCTCTACACATTAAATATGAATTTAATACTGAAGTTAGCCATTTTGACTAAAGCATCTCCCTGATTTATTTAATTCTAATCTCCTTGGATGCTAAATCAAATTTACCCAATAAACTGGTATCTGCTGCAATTTCGTAAGTTGACTTTCCTGAGACAGTCGCTATTTCATATATATATATATATATACATGTACACGTAGAGATAGGGGTGGGCATTCGGTATTTCGGTTCGGTTCGGGTTTTTTTTCGGTTTTTAGTTTTTGTAAATTGCGTACCGAATACCGAACCGAAATATTTCGGTTCGGTTCGGTTTTTTAATGGGCCTGTTTAGTGGGCTTTTTAAAATTTTAAACTTAACAATTTTTTCAATTTTTTGTTTGATTTTTCAACTTAATGGACTTTGATATTTCAACTTAGGGTTTCTTATTTTTTTTAAAAAGATTATTTAATATTAATAATTATTAAATATAATATAATTTATAAATTATAATATAATATTTCGGTTTAAACCGAAATACCGAATTCCAAAGTAACATGTACCGAAAACCGAATCGAAATATCAAAAATACAAAAAATTAAACCGAATACCGAACCGAAAACCGAAATACCGAAACCGAAATTCTGAAAAATTTCGATTCGGTTCGGTGTTTTGATTTTCCGGTTTTTATGCCCACCCCTACGTAGAGAGAGAAGTTCCAACTATCCCTAACTGACGCTGGTAGGGAAATTTGGAAATTCTCTCCCACGTCACGCTAGATTATGATTATGGGCTAAAATTCAACAGCTGATGTCACCAGCCCATAATGGAAGATTTTTCACTATTAGTATTGTTATATTATTATTTCTAGTTTTTAAACTTGCACTACTCTTTTTCTTGTTCATTGTTTGCTTCTGGGAAATGCTTTTCTTTTTGTAATGGTGGTGTCCGAGCAAGCTTATGTGTGTCTTGACTTTTCCACAGGGTACCTGCTACCTCCCACCAACATAGGTACCAGGTTGGCTTAGGCAAATGGGAAGCTGGGATTCATACATGATACCTCATTTTCTAATCCCACTTCGCTGACCATTAGGCAATACCCTTGAGTTCCACTTTGGTGCAATGTTAATGCTTACATTCTATTTGCTTCTTAATTTGAGATTTCATTGATTACATTTTATCATTAATGTGGCGATATTCTACAGCCGCAAGTTTACTAGTTTTATGTTCTGTGTTCCTTATGGTTGCTTCCTTCGACTATTTGAAACCATCTAATTGTGGTTTGTTGTGTGGACCCATTCATAGGGAGAAGTGTTCTCAGTAACTAGATTCATGAGTTGTATTTTTAGATAACTTTGATATGAAAACTTATTTTTCTTTCTTCCTTGGCTAGAATTTACCTGCATGTTGACTGTACTTGGCTATTTTGCTATGTTGAACTTTAGCGATTTGCATATGGAAAAGTTTAAAAAAACAGTCCTCCCGTTCCATCTTGCTTATTGAATCACATGATAGTGTAAATCATCTGTTGTTAACTTGTTATTTTCGATAATATTGGTGATAGGTCTACCATTTCTGTCTTTCACTTTTACCATCAACATGAGATGATCTTCTATAATTCGTTTGCTCCAGTCGAAAATTTCTCCTTGTTTACATTGACAAAATACAACTTCCTCGTTGGAGCTGATTGGACCTGATAATAACACAGTTCTCTTTTCGACTTTGATGTGCGTATTCTTGTGTTATTTCTTTGTTTTCTCTGATGAAGCTTATGAAATTTCTTGTTGCTCCATATAAGAGTTGAAGAAAGTTCTCAGTATTTATATATGTATGTAATAAAGAGTTGAAGGGAAGTTCTCTTTGCCTCTTAGAGGGCAGTTTACATGAAATATGCAGTAACTTCCTATTAAGTACACTGTGATAAAATAGTAGCTTTTCTTTCTGCAACTTAATTGGTCAAGTTGGTTGGCGTGAAACACGATAGCCTAACAATATTGTGCCCAAGGTTGGCAGGTGATGGATAATAAGATGTTCCGTTTTTCCTTTCTATAGGCCAATAACTTTGGCTGGAAAAACAACATTCTTTATGGCTGGATCTCTCTCTTTAGCCTCTAACGTGCGCTGATTGTTGCTGCTATTTTGTGTTGTCTTTTGTTAAAAGTTACAGTCAAAGATAACTTTCTTAATTCCACCCAGTTTGCTCTCCTAGATTCTTGTTATGTTGTGATTGTTCCTAATGTTAATGATGCGTTTTGATCCCATTTTAAACTATTTCAGGGAATTCGTGAATTAAGTCTAAGGCAAATGAAGAGGGAGCAAACAACTGCAACAGGGAG</genome_strand>
        <mrna_strand>TGAAAATAGATTATCCAGGAGAATCCCAGAATAGAGATGCAATCAAATTCAAATAAACCAAACGTACATATAAAAGGGAAAAGGGAAAAGGCAAAAAGGAATTTTATTTGTTCAAAAAAGAGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACGTTCTC...................................................................................................................................................................GAAATGGAAGAAAGGGAGAAGTTAGTGAAGCATATGTGGGATGTATACACAAACAGCCGTGGGATCAAATTGTTAAAGTTTTGGCAGGAAGCATTTGAGGCTGCCTATGAGGAGTTAGCCAGTGACGTCCCTGGAGTCCCAGAGGATGCCCTTTCTGAGATTGCTAAGATGTCTGTACGCTACATTCCTATTGAATCACCACCTCTTCATTCGTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATTCGTGAATTAAGTCTAAGGCAAATGAAGAGGGAGCAAACAACTGCAACAGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582169" ref_strand="+" ref_description="SGN-U582169 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|23429649|gb|AAN17752.1| (e_value=1e-138) ovate protein [Lycopersicon esculentum]; (*ATH) AT2G18500.1 (e_value=1e-25)  Symbol: OFP7 | ovate family protein, 69% similar to ovate protein (GI:23429649) (Lycopersicon esculentum); contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568 | chr2:8034116-8035333 FORWARD | Aliases: F24H14.15, F24H14_15, A... ; ">
      <seq>atgggaaaaagtttgaagcttcggttctccagagttattgcttctttcaattcgtgccgttcgaaaaacccttcttctcttccccaaaatcctaatttcttcccacataagctcactagtacaaaacacatttcccccgatttccctcttattgatcaaaatcaaaatcaaaatcaccgtaattacgtgccagaatccacgatgatctccgttgggtgttgtagatcagaattcaagtgggagaaagaagagaagtttcacgtggtttctagttccttcgtgtctgaagaagaagaatgtgaagaggagatcaatttggccttacgacctcctcttacacctccgcgattcagtagaattgttgttgagaagaagaagaagaaacaacagcgagttaaaaaaacgaaaacaaaaagtagaatcatccgaatgagtacttcctcagctgatgagtacagcgggatattaagcggtactaatactgattgggataataatgaagaggaaactgaatctttagtttcatcttccagaagctgttacgatttctcaagcgatgactcatctactgatttcaaccctcacttagaaaccatatgtgagaccactacaatgaggcgtcgtcacaagagaaatgccaacaccaagaggagatcaatcaagcaatccagaccaagtttttcctcttcaaaaggtagaagatcgtcggtttctacgtcatcagatagcgagctaccggcaaggttatcggtgtttaagaagctgataccgtgtagtgtggatgggaaagtgaaggagagtttcgcgatagtgaagaaatctcaggacccgtacgaagatttcaagagatcgatgatggaaatgattttagagaaggaaatgtttgagaagaatgagctggaacagcttttacaatgttttctgtcgttgaacggaaagcattatcatggagtgatagttgaggcgttctcagacatttgggagactttgtttttaggtaataatgatagagtaaggaggatgtcaattcatgatcccacacccacctactgtaggtagtagtagaagaacctcctttgattaatcatgatttagttgttaattaataaatttaacttttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="126440" stop="128711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126740" g_stop="127433" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127434" i_stop="127980" i_length="547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127981" g_stop="128411" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="1125" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U582169" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1125</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126740" e_stop="127433"/>
          <exon e_start="127981" e_stop="128411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATATGTGAGACCACTACAATGAGGCGTCGTCACAAGAGAAATGCCAACACCAAGAGGAGATCAATCAAGCAATCCAGACCAAGTTTTTCCTCTTCAAAAGGTAAAAGTACTATTTGTGCGATCAAATCTTTTATATTTACAGATAATTTTACAGTCACATTAATAAGTATTGCTTTTCGCGTGTGGAATTTGGAGAGGACAGAGTAAACATAGATCTTATAGCTATTTTGTGGAGAGATTAATTTCAAAAGACACCCAATAACAATAACATATTCAATAAAATTCCACTAACTAGAGTAGAAAAAGGATAGAGTTTACACGGAGCTTACCGTTCAAAAATTCTGGCTCAAAGCAAATGCATATCTTATTTAGAGATCAATAATTTTATTTTAAATATTTTTATCGTCTTTTTCTTTGGGAAATAGTGTATATGTAATTGTCGTACAAAAATATATGAAGCTTAATCAAAATTCATTACATTAATTAAAACGGAAAACTATTTAATTTATAATTATGTCTCAACATGCATGCTTCCTTTGTTACTTGTTTATTATTGGGTCGAATATATGAAAATATATTTTGGAAAGACTTTTGTTGCGCTAGTATTTAAAAAACTAGTACTGATTAATTATATTATGTTTGAACAGGTAGAAGATCGTCGGTTTCTACGTCATCAGATAGCGAGCTACCGGCAAGGTTATCGGTGTTTAAGAAGCTGATACCGTGTAGTGTGGATGGGAAAGTGAAGGAGAGTTTCGCGATAGTGAAGAAATCTCAGGACCCGTACTAAGATTTCAAGAGATCGATGATGGAAATGATTTTAGAGAAGGAAATGTTTGAGAAGAATGAGCTGGAACAGCTTTTACAATGTTTTCTGTCGTTGAACGGAAAGCATTATCATGGAGTGATAGTTGAGGCGTTCTCAGACATTTGGGAGACTTTGTTTTTAGGTAATAATGATAGAGTAAGGAGGATGTCAATTCATGATCCCACACCCACCTACTGTAGGTAGTAGTAGAAGAACCTCCTTTGATTAATCATGATTTAGTTGTTAATTAATAAATTTAACTTTTCTTTT</genome_strand>
        <mrna_strand>ATGGGAAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATATGTGAGACCACTACAATGAGGCGTCGTCACAAGAGAAATGCCAACACCAAGAGGAGATCAATCAAGCAATCCAGACCAAGTTTTTCCTCTTCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGATCGTCGGTTTCTACGTCATCAGATAGCGAGCTACCGGCAAGGTTATCGGTGTTTAAGAAGCTGATACCGTGTAGTGTGGATGGGAAAGTGAAGGAGAGTTTCGCGATAGTGAAGAAATCTCAGGACCCGTACGAAGATTTCAAGAGATCGATGATGGAAATGATTTTAGAGAAGGAAATGTTTGAGAAGAATGAGCTGGAACAGCTTTTACAATGTTTTCTGTCGTTGAACGGAAAGCATTATCATGGAGTGATAGTTGAGGCGTTCTCAGACATTTGGGAGACTTTGTTTTTAGGTAATAATGATAGAGTAAGGAGGATGTCAATTCATGATCCCACACCCACCTACTGTAGGTAGTAGTAGAAGAACCTCCTTTGATTAATCATGATTTAGTTGTTAATTAATAAATTTAACTTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580447" ref_strand="-" ref_description="SGN-U580447 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|156070792|gb|ABU45204.1| (e_value=2e-92) unknown; (*ATH) AT3G57610.1 (e_value=1e-83)  Symbol: None | adenylosuccinate synthetase (ADSS), identical to adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Swiss-Prot:Q96529) (Arabidopsis thaliana) | chr3:21345261-21347635 REVERSE | A... ; (*SWP) sp|Q96529|PURA_ARATH (e_value=1e-82) Adenylosuccinate synthetase, chloroplastic OS=Arabidopsis thaliana GN=At3g57610; ">
      <seq>gcattgctcccaaagttgtnggtgatcttgttggtgtggttaaggcatataccacaagagttggttctggtccttttccaacagaaatcatgggcaaaggtggtgaccttcttcgttttgctgggcaggagtttggcacaaccactggacgtccgcgtcgttgtggttggctagacatagttgcgctgaaattctgctgtcaaataaatggatttgcttctcttaaccttacaaaactagacgtgctgtcagatctaccagaaattcaattgggtgttacttacaggcatcctgatggctcagcattacattcttttccctctgatcttcgtcttcttgagcaaataaaggtggagtatgaagttttgcctgggtggaagagtgatatttcttccatcaggaagtattctgacttgcctaaggctgcacgcgagtatgtagaaaggatagaggagcttgttggggtacctatccattacattggtataggacctggtcgtgatgcccttatctacaagtgattttagatttttatcatcatattgccagagtcatattcttcaaattgttggtaaaccttagactaagcttgtagtaacatcatgaattatcattttgatgttattgcttaatgtaaaaattatgtctctgttgtctttaaagctagaaattttgttagacctcccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="138550" stop="136536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138250" g_stop="138213" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138212" i_stop="137904" i_length="309">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137903" g_stop="137592" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="350" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137591" i_stop="137179" i_length="413">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137178" g_stop="136836" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="693" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U580447" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580447" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="138250" e_stop="138213"/>
          <exon e_start="137903" e_stop="137592"/>
          <exon e_start="137178" e_stop="136836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTGGTAAGCAAACTTGATTTATTTTCTTAAGGGAGCTTTTCCCTTGCACTGAAGAATGAAGAATTCTCATGACGTTCAATTTTATCTGATAGTCTAGCTAATATTATGGGAATAAAGCTAGTATTATCTTTCCAAAAACATATTGCAGTACATATATCATCGTCAATCGGTTTAACATGAAATGTACCCAGCTCTTTGCGAAAGAATATGATCTTCATATCAACTAGCTCTTTGGAACCGATTCACAGCATGGTCTTTCATTTTGCATTTAGTGTAGAGCAGTAAACATTTTTAACTGATGTTTCCCTGCAGGTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAGGTAAGTTTCTTTTATCTTTCTTTCTTCTTTCAACATCCTTTTGCATGATATTGTGGTGTTTGGAAATCCAGATTATTAGTTTCAACTTCATGGGGAAATTGAGCTGTATTAACACATTGTGTCACTGAAAAGCATAGATCATTGAAGTTTCATTTGTGAGGAGTTAACTTTTGTTTGATTTCCTTTACCCTGTTATTGAGAGATGAAAAAAACTAAGTTTTCTGATTTTTTTGGTACTTCTTTGTTCTTTCAGTCTGTCGTTTTCTCCCATGTATCTTGATTTTTTCCTATTTTTTGTTCATATCTGGAGACCTTCATTATGCATATTGAATCTTTTTCCCTCCTGTTGTGTGTCTTAATACCATTTTGTACTTTCCTGTATTTTGACTTCTATTATTTATCATCTACATCAGGTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAGGAAA</genome_strand>
        <mrna_strand>GCATTGCTCCCAAAGTTGTNGGTGATCTTGTTGGTGTG.....................................................................................................................................................................................................................................................................................................................GTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592053" ref_strand="+" ref_description="SGN-U592053 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>taaaaatctaaaatcacttggagataagggctttacgaccaggtcctataccaatgtaatggattggtcccccaacaaggtcctttattctttttacatactcgggggcagccttaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="136695" stop="137415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136995" g_stop="137115" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U592053" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>121</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136995" e_stop="137115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATCTAAAATCACTTGTAGATAAGGGCATCACGACCAGGTCCTATACCAATGTAATGGATAGGTACCCCAACAAGCTCCTCTATCCTTTCTACATACTCGCGTGCAGCCTTAGGCAA</genome_strand>
        <mrna_strand>TAAAAATCTAAAATCACTTGGAGATAAGGGCTTTACGACCAGGTCCTATACCAATGTAATGGATTGGTCCCCCAACAAGGTCCTTTATTCTTTTTACATACTCGGGGGCAGCCTTAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580707" ref_strand="+" ref_description="SGN-U580707 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|9858775|gb|AAG01122.1|AF273333_7 (e_value=7e-117) BAC19.7; (*ATH) AT3G57610.1 (e_value=1e-75)  Symbol: None | adenylosuccinate synthetase (ADSS), identical to adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Swiss-Prot:Q96529) (Arabidopsis thaliana) | chr3:21345261-21347635 REVERSE | A... ; (*SWP) sp|Q96529|PURA_ARATH (e_value=9e-75) Adenylosuccinate synthetase, chloroplastic OS=Arabidopsis thaliana GN=At3g57610; ">
      <seq>tcttattcctctctcttgcatatctccgtttatagcgtgcacagcgcaaccgcacgccgccgcggcactaccattaccatgaacatctcaactctaagactcgattccaatccaatcactacggcaacggcgactcaccggaatgggatcctcggttgcaatgggacctatagttataggttcaatcagttccagcagaggaagaagactgcttcaattgtcgtttgttcgacaaagcctcttgcctcggtagtggaccatcagggggttaatgagtcaggactgagacgaattgagtcactcagtcaggtatccggcgtgttgggttgccaatggggcgatgaaggaaagggaaagctcgttgatatactggctaaacatttcgacattgttgctcgttgtcagggtggagccaatgctgggcatactatatacaattctgaggggaagaagtttgctctgcaccttgtcccttctgggattctcaacgaggaaactctgtgtgttattggtaatggagttgtggtgcatctaccgggactttttaaagaaattgatggtcttgaagctaatggagtttcttgccaaggaaggatcttggtatctgatcgtgcacacttgttatttgattttcaccaagaaatagatgggcttagagaagctganctagctaantcctttattggnaccaccaagagangcattgggcnatgctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="140090" stop="138292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139790" g_stop="139386" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139385" i_stop="138906" i_length="480">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138905" g_stop="138592" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="719" r_length="314" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U580707" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139790" e_stop="139386"/>
          <exon e_start="138905" e_stop="138592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAGGTATATTTATATGAGTTTATGTTCATAAACAATTTGATATGCATGATATCTTAACCTTGTAAAGGTGAGTAATAACTTGCTTTAACCGCTTAAATAACACTCATACTGCAAAGCTAACATCTTGGAGTAAATTTTAGGCCATATCAAGAACAGTATTTGCTTTGTTATGTGGAAATTCTGTGAGATATGCTTGGTTGCAGTAAGTGGGTGAATTAGGGTAAAGGAGGCCTCCTAAAGATGCCTAGTGGAACCTTGGTTTCATAGTTCTGTAGAGAACTGTTTCAAATTCTATATTATGAAATTATCAATGTTTATATCAAATATTTTTTTTTTAATGTTTCATACGTATTACTTATTACCAATTTGTTTTAAACTTAATATTTTTTTGCTATCCTGTCATTCCATTTTACTTATATTGCCTGAGAGATAAACTTGTTAGCTATGATAGCTAAGCTTTTCAATAACGTTTCTTGCTGTCAGGGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTC</genome_strand>
        <mrna_strand>TCTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGANCTAGCTAANTCCTTTATTGGNACCACCAAGAGANGCATTGGGCNATGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601814" ref_strand="+" ref_description="SGN-U601814 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|156070795|gb|ABU45207.1| (e_value=2e-93) unknown; (*ATH) AT4G36680.1 (e_value=5e-61)  Symbol: None | pentatricopeptide (PPR) repeat-containing protein, low similarity to fertility restorer (Petunia x hybrida) GI:22128587; contains Pfam profile PF01535: PPR repeat; identical to cDNA membrane-associated salt-inducible protein like GI:2... ; (*SWP) sp|Q9LG23|PPR82_ARATH (e_value=4e-25) Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890; ">
      <seq>tcaaaatttatcatcagatggatgatttaggcacccccagatcagctatttccttcaatgtgcttttatcagcttgcgtgcgctcaaaactatatgatcgtgtcccccagctgtttgatgaaattccagtgaagtatagatttttacctgataaagtgtcgtacggtatactgattaggtcatattgtgaaacggggttgccggaaatggcaatggaaatactcaaggtgatggaggagaaaagtgtggagattacaacggttactttcactactatactacattcattctacaagaaagggaagagtgatgaggcggagaaggtatggaatgagatggtgaacagagggtgtggtccagatgttggtgcatacaatgtgaagattatgaacattcaggggggtgatctggagggcgtgaaagctttaattgaggaaatgaacgatgctggattgaaacctgatacgattagctacaattatttgatgacttgttattgtaagaatgaattgatggacgaggcacagatggtttatgatgatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="145032" stop="143888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144732" g_stop="144188" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U601814" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144732" e_stop="144188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGACCAGTTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATTGTGTCCCCCAGCTGCTTGATGAAATTTCAGTGAAGTATGGATTTTTACCAGATAAAGTGTCGTACGATATACTAATTAGGTCATATTGTGAAATGAGATCGTCGAAAATGGCAATAAAAATACTCAAGGTGATAGAGGAGAAAAGTGTGGAGATTACAACGATTACTTTCACTACCATACTTCATTCATTCTACAAGAAAGGGAAGAATGATGAGGCGGAGAAGGTATGGAACGAGATGGTGAACAAAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATCATAAACATTCAGGGGGGTGATTTGGAGGGCGTGAAAGCTTTAATTGAGGAAATG-ACGATGTTGGATTGAAACCTGATACGACTAGCTACAATTACTTGATGACTTGTTATTGTAACAATGAATTGATGGACGAGGCACAAATAGTTTATGATGATCTGG</genome_strand>
        <mrna_strand>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGATCAGCTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATCGTGTCCCCCAGCTGTTTGATGAAATTCCAGTGAAGTATAGATTTTTACCTGATAAAGTGTCGTACGGTATACTGATTAGGTCATATTGTGAAACGGGGTTGCCGGAAATGGCAATGGAAATACTCAAGGTGATGGAGGAGAAAAGTGTGGAGATTACAACGGTTACTTTCACTACTATACTACATTCATTCTACAAGAAAGGGAAGAGTGATGAGGCGGAGAAGGTATGGAATGAGATGGTGAACAGAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATTATGAACATTCAGGGGGGTGATCTGGAGGGCGTGAAAGCTTTAATTGAGGAAATGAACGATGCTGGATTGAAACCTGATACGATTAGCTACAATTATTTGATGACTTGTTATTGTAAGAATGAATTGATGGACGAGGCACAGATGGTTTATGATGATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589561" ref_strand="+" ref_description="SGN-U589561 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|9858778|gb|AAG01125.1|AF273333_10 (e_value=6e-123) BAC19.10; (*ATH) AT5G49530.1 (e_value=3e-35) | Symbol: None | SIN-like family protein, low similarity to Sex-lethal interactor (Drosophila melanogaster) GI:6049274; contains Pfam profile PF04801: Sin-like protein conserved region | chr5:20117805-20121673 FORWARD | Aliases: K6M13.8, K6M13_8; ">
      <seq>atttggagttgaagtttcacttttccatccagaaaattgcagtgatggatttggacttcgacggtccaagtaaagtcccgagcaggcaagctcgtttcgctcccaagaactccaaattaaagccccaacccaaaagtgaaacactgccattgaaggtagattcagagattccgactaaaaaggaagaatttgtatcacaaccccctctaagagatcatatagtgaaaaacggagaggcaaaagttgaggacgacgttcttttgaatggagagactacgggaaacgatcttgcagaagaacaagtcggaatggaaactgatagcgatcaggatgaagttgttcgtgaagttgacgtgtggcttaccccttccgccaatgagttctatgtactccaatatccgttgaggtccgaatggcgtccctatggtttggatgaaagatgccaagatgtgaggttgagaccttcatcggcagaaatggaagttgatttggcaatagattttgattctaaaaatttcgacagagactctgtacatgcagcaacaataaaaaaacagattgtttctacnaaatgggtgccatcatctacttgtgctgactttgctgntgggatcttcattggtgataagttccacctcaatcctgntcatgcaattgtacagctccgaccatcactgcagcatcgtaanggaaagtgagttgaanaancttaccaccagcantgatgaaaaaagttgtgaaaacnaanacntcangganaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="145891" stop="149014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146191" g_stop="146570" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146571" i_stop="146659" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146660" g_stop="146728" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="449" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146729" i_stop="146867" i_length="139">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146868" g_stop="146975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="557" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146976" i_stop="147882" i_length="907">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="147883" g_stop="147954" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="629" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="147955" i_stop="148581" i_length="627">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148582" g_stop="148714" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="763" r_length="134" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U589561" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146191" e_stop="146570"/>
          <exon e_start="146660" e_stop="146728"/>
          <exon e_start="146868" e_stop="146975"/>
          <exon e_start="147883" e_stop="147954"/>
          <exon e_start="148582" e_stop="148714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGAGTTGAAGTTTCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAGGTAGATTTTCTTGATTCAATATACGTCTGTTTTATTGTTGAATTTGCAAATTTTTCTATTTGTGAAGTATATTTTCTTTTCTTTTTCAGTTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGATGTGAGTTACAACTGCTTTTAGTGTTTTCCTTTGAACAAATTGGTCACTGTTATGTGATATTGCTAAAGACAGGAATTGATTGGCTGGTTTTAAATGACCAGTTTGGATGTCTAAAATCGATTTTTTAATCATTTTGCAGGTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAGGTTCTTTTAGAGCTATGGAAGCTAGACTTTTATTGTTTTTTCTCTTCTTAAACCAGCAATAAAGACAAAAAAAAGAATCTAGGTGATTTATTTTTATATGTGTAAGACTTGTGCAGGAGCTACCAGCTACATTTGTTGGTTAGGGGCATATTACTTAGTCGGAAAAACATTGCAGCTCTTTTCGTCATGTCGCTTTCCTTTTGTTTGGTAACTCTTTAATTTTAGCATGTTTAAAACCACAAAATGAAAGGACATTTAGTCCCTTCTACCTTTTCTTAGTTTACGACCACAAGATTCAAAACTCTTCATATCTTAAACTATGTGCCAAGTCGAAACGAGTCAAACAAATTAAAATGGAGGGAGTATTACATTCCTCCCATTTCTCTGCCTTAAATTCCATTTGTAATACCATCTGTTTTGGGCCTACTCCTTGCTCTTAATGGACACGTGTATATACAGACAAAGGCAGACCCGCGTGTGGGAGGAGGTGGGGTGGGGGGTCATGGGATCCTGTTGACTTTAGGAGGAGTCGAGTGTTCAATTTTGTTTTCTTTAAGCCTCAATTTTCTTAACAAAAGAGGCTCAAAAATTTTCAAATGTAATGTTTAGAGCAAGAGTCGATCCTACACCCTTTACAGAGCAAATGAGGTGTTGGAACAAGAATCACTTTGTTAAGCTTTGTCATTTTTGCTTAATATATCCACTTCTTTGTAATCAGGTGGTGTCACATTCAACATGCATTCGACTTCACGGTTGTAACTTTGTTGTTAGTAGTAGGATAAGGAGGTTGTATTTTGAGAACTTTGACAATTAGAGTCTGGAAACTCCGCACTTGATATTTGTTCCCTTAGCAGGAATTACAGTTCTAATTGTTTGACCCAGAATCTGATTGGTTCTGAATTTCTAGATTGTTTCTACAAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGTTGGGATCTTCATTGGTGATAAGGTAAATGATTTGTTGTTGATGGCTTGAATGCATATTTAGCATCTGGTCTCGTGGAGTTCTGATTGACTAAAAGTTAGTCCTTCACAGGTTTTATATGTGCTTATCCTGTTCTGCTTTTGTCCTTTTTTTGTAATTATTAAAAAATAACTAATTTGGACCAGAACAATATCGGGCGGCTACACTCTCAACCTCAAATGTAATCAAGTCAATCTTTTATCAGCTTCAAGTTGAAGCAAACTATTTGCTGTCTGCTGTCAAATCTAACTCAACTGTTACCTATGGAGTTGGAAATTGTTATAATACCTCTGGCTCTCTTATTTAGCCCAAGTTCTGCCACTTAATATTAAAAAATTGTCAAGTCCTAGTTATATTCTTCTGTTTCTTATATAAATTGGTGTGAGGAACTTCAAGTAAAATCTCTAAGTTTGATGATAACTATCTGAAGCTCATTGCTGCAGTCAAAAGAAAAAATATACTGTAAAAATGCTTTTTACTTTTCAGTACAACCTATATACTGTACTTGTCAGTATACACAAATGTTACCTTCTCAAAAAAATTGATAAAATAAGTATCAAAGCTTATTAATGTTCTCAATAGTCACACTCTTGCTTCCTGTTTGTTATGCAGTTCCACCTCAATCCTGTTCATGCAATTGTACAGCTCCGACCATCACTGCAGCATCGTAA-GGAAAGTGAGTTGAAGAACCTTACCACCAGCAATGATGAAAAAAGTTGTGAAAACGAAGACGTCAAGGAGAAAA</genome_strand>
        <mrna_strand>ATTTGGAGTTGAAGTTTCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAG.........................................................................................TTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGAT...........................................................................................................................................GTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTCTACNAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGNTGGGATCTTCATTGGTGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACCTCAATCCTGNTCATGCAATTGTACAGCTCCGACCATCACTGCAGCATCGTAANGGAAAGTGAGTTGAANAANCTTACCACCAGCANTGATGAAAAAAGTTGTGAAAACNAANACNTCANGGANAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572730" ref_strand="+" ref_description="SGN-U572730 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|156070796|gb|ABU45208.1| (e_value=0) unknown; (*ATH) AT5G49530.1 (e_value=9e-106) | Symbol: None | SIN-like family protein, low similarity to Sex-lethal interactor (Drosophila melanogaster) GI:6049274; contains Pfam profile PF04801: Sin-like protein conserved region | chr5:20117805-20121673 FORWARD | Aliases: K6M13.8, K6M13_8; (*SWP) sp|Q9CZT4|RPC5_MOUSE (e_value=3e-24) DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus GN=Polr3e; ">
      <seq>ttcacttttccatccagaaaattgcagagatggatttggacttcgacggtgcaagtaaagtcccgagcaggcaagcccgttttgctcccaagaactccaaattaaagccccaacccaaaagcgaaacactgccattgaaggtagattcagatattccgactaaaaaggaagaatttgtatcacaaccccctctaagagatcatatagtgaaaaacggagaggcaacagttgaggacgacgttcctttgaatggagagactacgggaaacgatcttgcagaagaacaagtcggaatggaaactgatagcgatcaggatgaagttgttcgtgaagttgacgtgtggcttaccccttccgccaatgagttctatgtactccaatatccgttgaggtccgaatggcgtccctatggattggatgaaagatgccaagacgtgaggttgagaccttcatcggcagaaatggaagttgatttggcaatagattttgattctaaaaatttcgacagagactctgtacatgcagcaacaataaaaaaacagattgtttctacaaaatgggtgccatcatctacttgcgctgactttgctgttgggatcttgattggtgataagttccacctcaatcctgttcatgcagttgtacagctccgaccatcactgcagcatcgtaaggaaagtgagttgaagaaccttaccaccagcaatgatgaaaaaagttgtgaaaacgaagacgtcaaggagaaaaagcctgtgggtccgtcaaagaagcagaacaaactacctgggaactacaaggatattggagagcattggttacatctaaaataccatgggactaggagtgacatttcagccagacatcttcagaaaatggccatggagggaggctccccagtaccattttcaatgatcccgagtgattatctgaacgccatttgtcctgcaagaccaactgacattgacagattaagaaatcttagaacaaggttgtctcagaaaccttttgaagaacgtgttagaacttggcttcttgagggacctccaattcatcgttttgatactctaaagcacctagctccagataatcctgttgatgagattctggaagttctcaaaagttgcgcacaattagttcaaggattgtgggttgcaaaaagttcattagtctatgacacaaacaacggagtcgaagttttagcgaggaattttgttctttatgagtttaccaagagtactttaatcaagaagtcactgtttggcaggaggcctgaattccttaaagctgcgacaccagttctaaaatcattagctgttgagaggcctgacctggatgattggaagctcaaagagcttcctgacaagaaatttgaaaacctttatggtgatgttgttagagagcagcaagctatctgggagtccatggggaaacagatcaatgatattatgcatggaggaagaaacaggcctactttgaagaatcctctaaacccaaaggccaacattcctgcgttgtcaagtagtgataagcccactcctacgacatttttgagaacatctctgtcagaagaaattcgtggagctttaccaaaggcgcttcaaaatgtttttagaatccataaggtttgcagtttgcttcaaatttgcgaactgatggaaaaggaagatccaaagaaagctataatttcacccgcgggtgtttctgatgcacatcaaaaggagatagaggcagtggttaatcagattgctgtaaacatccacggtgtctatgttttgaagtcatcgccagataatccacagtatgatgcattgaggaaagttgtaattgatctttttatggccgaagggtcgactgcaaagctaaagaaagcatctatagttgaagctgccaagttgcaactgggaagggatgttaccactgtggagtttcaaaaggttatgaaggaactatgtcgttcagaaaactcagcgtgggttttgggaagcagtgacagcaatccacaacagtagtctgctatttttgattaagttgtacaggtcatggaaagttcactgctagctgcagaaattctcaatgctgaggagaagttggcttttcttgaagtttcactttactcttgagaggcttaattgttcagttttgaggttaacaggagtctcgcgtatatggttgagctgttgaaacgcttcgcggtgcatttgcaaatctgggatgtcaagccttttttgctcattcttttatcattcaattcattcttttcatgaacgaaaatatagtcagatgtttcttttcaatgtcttgaatatctctgttaaaatgtatgaattgttgcatctctctacttgcagaagaaaatcattcagcatctttgtaccatcagaagaaaaatataagttaaaaagtttgccattcttttaattatatacgtatttgattcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="145906" stop="159991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146206" g_stop="146570" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146571" i_stop="146659" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146660" g_stop="146728" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="434" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146729" i_stop="146867" i_length="139">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146868" g_stop="146975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="542" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146976" i_stop="147882" i_length="907">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="147883" g_stop="147954" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="614" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="147955" i_stop="148581" i_length="627">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148582" g_stop="148740" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="773" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="148741" i_stop="149333" i_length="593">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="149334" g_stop="149369" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="809" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="149370" i_stop="149624" i_length="255">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="149625" g_stop="149731" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="916" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="149732" i_stop="150741" i_length="1010">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="150742" g_stop="150813" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="917" r_stop="988" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="150814" i_stop="153172" i_length="2359">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="153173" g_stop="153221" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="989" r_stop="1037" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="153222" i_stop="153353" i_length="132">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="153354" g_stop="153946" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1630" r_length="593" r_score="0.985"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="153947" i_stop="155208" i_length="1262">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="155209" g_stop="155391" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1631" r_stop="1813" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="155392" i_stop="155464" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="155465" g_stop="155585" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1814" r_stop="1934" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="155586" i_stop="159161" i_length="3576">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="159162" g_stop="159692" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1935" r_stop="2440" r_length="506" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U572730" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>2465</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146206" e_stop="146570"/>
          <exon e_start="146660" e_stop="146728"/>
          <exon e_start="146868" e_stop="146975"/>
          <exon e_start="147883" e_stop="147954"/>
          <exon e_start="148582" e_stop="148740"/>
          <exon e_start="149334" e_stop="149369"/>
          <exon e_start="149625" e_stop="149731"/>
          <exon e_start="150742" e_stop="150813"/>
          <exon e_start="153173" e_stop="153221"/>
          <exon e_start="153354" e_stop="153946"/>
          <exon e_start="155209" e_stop="155391"/>
          <exon e_start="155465" e_stop="155585"/>
          <exon e_start="159162" e_stop="159692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAGGTAGATTTTCTTGATTCAATATACGTCTGTTTTATTGTTGAATTTGCAAATTTTTCTATTTGTGAAGTATATTTTCTTTTCTTTTTCAGTTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGATGTGAGTTACAACTGCTTTTAGTGTTTTCCTTTGAACAAATTGGTCACTGTTATGTGATATTGCTAAAGACAGGAATTGATTGGCTGGTTTTAAATGACCAGTTTGGATGTCTAAAATCGATTTTTTAATCATTTTGCAGGTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAGGTTCTTTTAGAGCTATGGAAGCTAGACTTTTATTGTTTTTTCTCTTCTTAAACCAGCAATAAAGACAAAAAAAAGAATCTAGGTGATTTATTTTTATATGTGTAAGACTTGTGCAGGAGCTACCAGCTACATTTGTTGGTTAGGGGCATATTACTTAGTCGGAAAAACATTGCAGCTCTTTTCGTCATGTCGCTTTCCTTTTGTTTGGTAACTCTTTAATTTTAGCATGTTTAAAACCACAAAATGAAAGGACATTTAGTCCCTTCTACCTTTTCTTAGTTTACGACCACAAGATTCAAAACTCTTCATATCTTAAACTATGTGCCAAGTCGAAACGAGTCAAACAAATTAAAATGGAGGGAGTATTACATTCCTCCCATTTCTCTGCCTTAAATTCCATTTGTAATACCATCTGTTTTGGGCCTACTCCTTGCTCTTAATGGACACGTGTATATACAGACAAAGGCAGACCCGCGTGTGGGAGGAGGTGGGGTGGGGGGTCATGGGATCCTGTTGACTTTAGGAGGAGTCGAGTGTTCAATTTTGTTTTCTTTAAGCCTCAATTTTCTTAACAAAAGAGGCTCAAAAATTTTCAAATGTAATGTTTAGAGCAAGAGTCGATCCTACACCCTTTACAGAGCAAATGAGGTGTTGGAACAAGAATCACTTTGTTAAGCTTTGTCATTTTTGCTTAATATATCCACTTCTTTGTAATCAGGTGGTGTCACATTCAACATGCATTCGACTTCACGGTTGTAACTTTGTTGTTAGTAGTAGGATAAGGAGGTTGTATTTTGAGAACTTTGACAATTAGAGTCTGGAAACTCCGCACTTGATATTTGTTCCCTTAGCAGGAATTACAGTTCTAATTGTTTGACCCAGAATCTGATTGGTTCTGAATTTCTAGATTGTTTCTACAAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGTTGGGATCTTCATTGGTGATAAGGTAAATGATTTGTTGTTGATGGCTTGAATGCATATTTAGCATCTGGTCTCGTGGAGTTCTGATTGACTAAAAGTTAGTCCTTCACAGGTTTTATATGTGCTTATCCTGTTCTGCTTTTGTCCTTTTTTTGTAATTATTAAAAAATAACTAATTTGGACCAGAACAATATCGGGCGGCTACACTCTCAACCTCAAATGTAATCAAGTCAATCTTTTATCAGCTTCAAGTTGAAGCAAACTATTTGCTGTCTGCTGTCAAATCTAACTCAACTGTTACCTATGGAGTTGGAAATTGTTATAATACCTCTGGCTCTCTTATTTAGCCCAAGTTCTGCCACTTAATATTAAAAAATTGTCAAGTCCTAGTTATATTCTTCTGTTTCTTATATAAATTGGTGTGAGGAACTTCAAGTAAAATCTCTAAGTTTGATGATAACTATCTGAAGCTCATTGCTGCAGTCAAAAGAAAAAATATACTGTAAAAATGCTTTTTACTTTTCAGTACAACCTATATACTGTACTTGTCAGTATACACAAATGTTACCTTCTCAAAAAAATTGATAAAATAAGTATCAAAGCTTATTAATGTTCTCAATAGTCACACTCTTGCTTCCTGTTTGTTATGCAGTTCCACCTCAATCCTGTTCATGCAATTGTACAGCTCCGACCATCACTGCAGCATCGTAAGGAAAGTGAGTTGAAGAACCTTACCACCAGCAATGATGAAAAAAGTTGTGAAAACGAAGACGTCAAGGAGAAAAAGCCTGTGGGTCTGTCAAAGAAGCAGGTTCATTCATGATTTGCTATTTGATGCCAGCTTCTAAGCTCAACTTATATGAACCTTGTATACAGTTACCTTTCATGTGATATTATGGTACATATCAGTGGCTAGCACTTAAAATATCATATGTCAAGGCTTTTCCCCTTCTCCGGTTAACTTCATTTTTTGAACCGAGGGTTTATCGGAAACGATCTCTCTACCCCACAAAGGTAGGGGTAAGATCTGTATACATCTTAGTTCTTACCGTCCCAAACCACACTTGGGGGATTACACTGGGGGATGTAGTTGTAGTATGTTAAGGACTTCTTTGTTCCTGATTTACTAGCTTTGCCACAATTTTGGATAAATAATGATAAAAGGAATACCTAAAGATAAGTCTTCTATGGTTAAGCACTTTCTGCTATTTTCAAGACTTCTTGTCTAGAATGGTGAACTTCACAATCTTACCCAGGACTCAGGAGCCCAGTATCTGCCTTCCCAGTTTGCCTCACTTGGTGACCTGATTCAACCCTATCCCTCCCCTGATGCTGTTCAAACTTTTCGTATAAGTGCTTTACCTTTTCTTTGATCTATTCTTGAAACACGTATCCTTTGTGCAGAACAAACTACCTGGGAACTACAAGGATATTGGAGAGGTATGAACACCTGTTAACATGACAAAATTTCCGCTTTTCAGTATTAGCTAATAACTCTTCATAATGTTCATTTGCTTGAGTGGCTGCCGTTTTTTCGTCTACAATTTTGGATTTGACGTTTCTGTTGCAAGTGTTTTCTATTTATTTGTACTCAAGAGCAGTTAACTTTCTCCATGCAGTTGCCAATATCATTTCAAACAGTTTCATTAATGCGGATCCTTGACTTATTGATATCTGTTTCATTTCCTGTTTTAGCATTGGTTACATCTAAAATACCATGGGACTAGGAGTGACATTTCAGCCAGACATCTTCAAAAAATGGCTATGGAGGGAGGCTCCCCAGTACCATTTTCAATGATCCCGTATGTATCTGCTAATATGGTTGATTTTTCTTCGCTTGAGCCATATATATTTTTTGCAAACTGCTTCTGTTCTGGACAATTAAAAGATACATTTCCTGCCTCAGAGCATACATTTATCTACTCTCATTCTTCTATGATGAACTAAGGGTAATTCACTAAAAAGCATCCAGAAGATGCAAGCAGAAAATTACAAGAGAGGGAGATAGTGTCTGCTCGTATCCTCATACCACTACATACCCAGTGTTATCCCACAGAGATAGTGTCTGCTCATAGCCTCATACCACTGCATACCCAGTGTTTTCTCGCAGAGATAGTGCCTGCTCATAGACACACTAAAACACTATTCTATCACTAAGGAGTAGTGAACAACAACACACCCAGTGTAGACCAAAAATTGAACACAACTAGTTACAGGGGCCTGATTGAGCCAACTATTACAAAAACAAATTCAGTAAGTATTTTGCTTTGAGTACACGAGTAGGAGTTGAAATCCCACAAAACATCTATGATTCCATTCATTCCCCATGTACCAAAAAATAGCAGCAGAGACTGTTTCCTAAACACCAGCTTTCATACGCTTCTTGATGCTGTAAGGCTTGACCCAAGCTAGTCAACAACAACAACAACAAATCCAGTGTAATCCCAGAAGTGTTGTCTGGGAGGGTAGTGGGTACTCAAACCTTACACCCCTACCTTGAGAATATTGACTGTTTTCGATAGGACCTTTTGCTCCAAAAGATATGTAAAAGAAGTCAAAACAACAGCAAGATAACACAATAATCTAAGAATATTAAAATACATGAATGATACTACTGCGGGAATAATATCTACTAACCTTCTACTCTAATTGACCCAGGCTAGTGCAAGAATAGAAAAGAACATGCTCCAAATATCATATGCTACTGAACGATGCAAAAAAAAGATTTCTTAACACTTTCAGAATCCAAATTGCACATCTACTCTCATTTTTATTCTAATACCAGTTTTCTTCCTGCAAATTTGATACACAGGAGTGATTATCTGAATGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAGGTACTGCAGACACTTTAGTTGGTCCTTCACATCTATTGTTTTGACATTGAAAGGTCTGGAGGTGCTGCTAAAGACAAAAAGAAAATTTTATTTACATCTATGATCGTAGAGCTGTCTTCTTCTTTGATATGTGGCGTAATCATCCTCTAGTATTGTTGGACCATTCAACTAACTGCAAATTATCATCTTCTTTTTCAAAGAAATCACATATTACTGTAATCTGTTTCCTTATCTCCCCCTTCCACTTTATTTATTTAATTAGTTAATCTCTTTTTGCTTTCTGTACAATGTTAAGATGAGATTTTGATGATCTTTGATTACTTGTTGATAATCTAGTTTTTAGTTAGCAATTGACTCGTCTTTGGTTGATGGACTGGTAATTTCCTACAGTGTCAGAGATTAGATTCACATAGTAGCTTAAGCCTAGGCACAACGTCAATGGATGTAATTCTGATTGACTAAATTTGTAGATCAAATTGGGAAGGAGAACGTTTTTCTGAGATGGGGAAAAATCTCTCTAGTGGCGGATCCAGATTTTTTCACTACAAGGGTTCAAAAAATGAAAATGTAGTACTTGAGATTTGAACTTGGAACCTCATGGTGAATTTTGAACCCCCTCAGCCAACGTCATCTTATATTTAGGAGGTTCAAAATCTCTATATGTACACAAAAATTTAAAAATATCCAAATGGTGTCATTTTTAGTCGAGGGTTTGGGTGAACCCTCTAGATCCACCTTGACATGAATGCTTCTGCTGGCTTGGACTCAGGGGAGAAAGGAGAATTTCACTAACAGATCAAGTTCAACAAAATATTGTGGAGGGGATTTCTAAAAATGCAGCATTGGGAGGTTTAGCTAATCTTTGACGATGTGTGATGTTGGATCAAATAATATTTTGGGGGGAAAATTAGTAGAGAATGTGAACACAAGAAAATACTGGAAGCTATTAGGTGCTCAAACTCTAAGGTCCAGTCTGTCCCCCCACCCCTCACCCCACCCCCACCCATTTTGATGGTTGAACTTGGTCTATATTTCGGTCAAGTACATATTGGTGTTCCCTCTAAGGTGTGCTTTAGAAACAATCTAGATTCTGAATTCTCTCAGTATTGCATATGTCAGTCAAAAGTTGGAAAAAAGTCTCCAGTCTGCTGGGGCTATGAAGATTTTGATACTAACACCATGAAGTGGTAGGCTAAGCAGGAAAAGGAGAGAACTCAGACTTGAATTGCGAGGCAAAATTAAAGCGTGCATTTTACTGAAGAAAACTGAATCAAGACCATAAAAATTTAAAAAAGTTATACTTGTAAAGATAAATTAACTATAAACACAAACAACTATATGGACAAATCAAAGCAGACAGGTGTCCTGACTTTGAGCTTCACAACCACCATTACGAAAAAAATTCCTCGTGCTTGACCCATGGAAAAGAATAAGACTTGCATGTTTGGGGTGTGTTGTAAGCACGACTAAATAAATAAGAGTATGCTCTGTTAATCCGCCTCAACTTTTAGATGAGGTGTTCACTCACTCCAACATCTATTTTTATAGTATATGCAGGAAGCATTGTTGTCCCCGGTTTATAAAAAAATGTGTTACGGAATTAATTTTGGCATTGTGGTGGTAGGTGGGGGTGGGGGAGGGGGAGAGGGAGAGTAGGTTAAAGGCTTAAAGCTTTGTTGCTTTCTTGGTTTGTCATTGTAATAAATATGAGCTGTATGAAATGCAAGTTTACATTATGCTTTGTTTGCTAGAGAACCTAATCTTCCAGAAAGTAGTTTTTGTTCTCGATGTTCTAGCAATGAAATAAATAAGAAAACATGGTCTTGCTTCTTTCTAGTTTTGGAGTGATTGGCAGATCTACAAAAATCTTCGGGGCATTTTTATGTGATAAATCTTATTTCCATTTCTTTTGTTCATCACTTCTTGAGGCCGAGGACGGGAGTGGACTGTTGTTCCAGAATATGCTGTTGGATACATTTTCACCATGTTACTTGGCCAAACTTGCACCTCACTGGTCATCTTATCCTTGGTGTTCTACCTTTGTCATCTATCAAATTGATTTCTTTTCATTTAAAAAGAACTTTGTTCTAAATAGCCATCAGTTGTTAAAGTTGATTCCTTGGAATTAATTATTATTGACTGGTGTGACTTGTATTCATTCTAGGTGTGCTGGTGTAGTAAAATATAAATATGCAGTTTCTCTAGCCAGAAGTTTGCTGTTTCTTCCATTCAGTATCCAAGCCATGTAGAATAGATATCAGTACTGGATATGCCATATTTCTCAATTATGTTAAATTAGCATTCTTTCCCAGTCATTTTATGCTCCTAACTTGTAAATTGCCAAATGGATGGTTTTCAGGTTGTCTCAGAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTCTTGAGGTTTGTACCTACTATTTGGATTTTGCACTGCTTATATTTTTATGCCTGCAAGGCTGCAACAAAGTTTGTTTAGATGGCCCCATGGTGCTTATAACTCAGCACATTTCTAAATATGAATTCTTTTCGCAACAGGGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTTTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCAAAAAGTTCATTAGTCTATGACACAAACAATGGAGTCGAAGTTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTAATTAAGAAGTCAGTGTTTGGCAGGAGGCCTGAATTCCTTAAAGCTGCGACACCAGTTCTAAAATCATTAGCTGTTGAGAGGCCTGACCTGGATGATTGGAAGCTCAAAGAGCTTCCTGACAAGAAATTCGAAAACCTCTATGGTGATGTTGTAAGAGAGCAGGAAGCTATCTGGGAGTCCATGGGGAAACAGATCAATGATATTATGCATGGAGGAAGAAACAGGCCTACTTTGAAGAATCCTCTAAACCCAAAGGCCAACATTCCTGCGTTGTCAAGTAGTGATAAGCCCACTCCTACGACATTTTTGAGAACATCTCTGTCAGAAGAAATTCGTGGAGCTTTACCTAAGGCGCTTCAAAATGTTTTTAGAATCCATAAGGTTTGCAGGTGAGGTCTCTGAAAATGACTTATGAACTTTCTGCCTTTGCTGTTTATTATATAGTTAAACGTAATTTTAGGTATTCATAATTGTTAGAGCATGCAGAAACCTGGGTCAAGCAGGTGGTTTATTGACCTTGGTTTGATTGCTCAACATTTTTACAATTATTTTGGGGCTTTTTAAAATAGCTATTCTCCCTTTAACTTCTGCCACCTGTTGTCCTCCCTTTCTGTTTGGGTCAAGAACCCTCACCTTTTTGTGGGTAAACTGTAAGTTACCTCTTTATTCAATTCTTCCTGATTTCACCCTCCATTTATTTGATTGTTTCATCCTTTCTTTTCTTTTTCTTTTGATGAAGTAAGAGAATTTCATAGATGGCATCAAGAAGATGCAGAGATTACGAAAGTAAGTAGATACTCAAAAGGTTATCAGCCATAGCCGCTACAAAACTAAGCTAATGCACTCTTAGACTACAACTCTAACCAATCGACATGATTAGACTTCTCCGGCGACTCCAAAGTCCAACCAATACGTATTTCTTCTTCCTCTGTTTCTTTTTTCTTTCATCTTCTTTAGACTTCAAAGTTCTTCTACCTCTGTTTTTTTCTCTGTTGGGACTTCTGTTCTGTTTTTTTCTTATTCAAGTTCTAGACTTTTTTAGTATGTACTATCTATTTTTAGTTTTTGAATTAAAATATTTGCTAATATGCTATTGCTATTGAGATTTTGATTATTTATATATGCAATTAAATATCTTAATTTTTTTATATTTATTGGCGCCATACTTCAAAAGGCGAGTGCCCTTGCCTTGTTGCGGGCCAGACCCGTTTCGCCCTTCACTGACCAAAACACTGGTATGATCAGTCTTCTGAAAAGATGAGATGGTCTAGTTATAGGACATTTCTTTTTGCTTTGGAATGTTTTGATACCTTTGAGCAGTGGTATCACTCAGAGTCCTGTTTATATTGACTTATTGTTAGAGGTGAGCTGTGCGAGGATTTAGGTCGAAATTGTCCATCGCAAGATTTATGTTGCCTTTTCAGTATGTTGTATATCTACTTTACCTTTCTCGAATGGTAATGTATCATAACATAGAATATACAACATTGTCTTTTTCCTGTGCTCCTCATCTGTCTGAGATTTAGAAGGAACAGAGTAATTTCGTTGTTCAAGAAAAAAAACAAACTGTGCACTACTTGTTTTATTTACCTGATCCATCTAAACTTGTGACCCCTAACCAATTTAGAATCTACTGTTTACTTTTTGCCAGTTTGCTTCAAATTTGCGAACTGATGGAAAAGGAAGATCCAATGAAAGCTATAATTTCACCCGCGGGTATTTCTGATGCACTTCGAAAGGAGATAGAGGCAGTGGTTAATCAGATTGCTGTAAACATCCACGGTGTCTATGTTTTGAAGTCATCGCCAGATAATCCACAGTATGATGCATTGAGGTTAGTAACTATTGCTATATAACTAACACTTAAACACCTTGCTCCGTGGCTAATACATAGTTTTTGTTCTCAGGAAAGTTGTAATTGATCTTTTTATGGCCGAAGGGTCGAATGCAAAGCTAAAGAAAGCATCTATAGTTGAAGCTGCCAAGTTGCAACTGGGAAGGGATGTCACCACTGTGGAGTTTCAAAAGGTGAGTACTTTTCTTACTTGTCATGAGAATTAAGTTATATCTTCTTTGACTTTATTGTATGGGGTTTCAGGTAGTGGCAGAAGTCAATAATTGAACAGTTTTTTTAATCATAGTTGATGCAGCGATTTCGATTAGTCAATCAATCAAATATGCCTACTTCGGGTTATTTAAATACTTGTAAGAAATTTGTCTTGAGGGCATATTTTAGGGGTCTCAAAAAATAGAGGTTCTCTATATCTCAAACTTGTATGTACTCGAACCTAATGTATGTGTAGCTACAACCATGAAAGCTTAGTACAAGTAGTTCTGTAGTTGTATTCTATCTAACCAAGTCCACATTAACTCCAATTGATTTTAGGTCTTTGATCCACCTCCAAATAATTTTAGGTCTATTTCATCTTTTTAACACTTTCAATCACTAGAATGCACATATGAACTGGTAACTTTCATGGTAAAGAAGCGTTTCAATGTTTCATGGACTTGCAAGTAATGGGATGTCGATGGAGGTTTTGTTGGATTTGGTCCTATAGATTGGTGAGACTTGACCCTCAGATAACCCCCAAGAAAGATTGTTTCAAGTACATTGGGTCTCTAATCCAGGGAAGCTGAGACATTGATGATGATATCATACATCGTATTAGTGGGCGTGAATGAAGTGTAGGCTTGCATTCAGAGTCTTTATGATAAAATGGTATCATCAAAACTTAGAGATAAGTTTTATAAAATGATGGTTAGACCGACTTTGTTGTATGAAGCAGAGTCCTAACCAATCAAGAACTCCCATGTTCAAAAGATGCATATCGCGGAAATGAGGATGTTGATCAAGAACTCCCATGTTCAAAAGATGCATATCGCGGAAATGAGGATGTTGAGGTGGATATGTGGGCACATATGGAGCGATAAGATCTTGAATGAGGATTTTTAAGATAAGGGGGGAGTGGACTTCGTGGTGGAAAAGATATGAGGGAGGCGAGATGAAATGGTTTAGACATGTGTAGAGGAGATGCGAAGATGCTCCAATAAGGAGGTGCAAGAGGTTGATTATAGTAGGGTACGAAGAGAGGTAGAAGTAGACTGAAAAAGTATTACGGAGAGCTAATTAGACAGGATATGACTCAACTTCGGGTTATTGAGGAAATGGCCTTAAGAGTTAAGATAAAAGGGTGTGGAGGACGCGTACTAGGGTAGATGGTTAGTAACCAGGAGTGTTGTCTTGCTTTTCGAGGGTTTTAGGTGTGTTGGTGTTTGTCCTCATACTGATTGTATTATTGTAGTTCTTGCTTTTGATATCTATCATAATTTGTTGTTTAATGTGTTTCGGTTAGAGCATTATTTTGTTCTTGTTCCTTTCTTGTAGGATTTGCACTGCTTCCTTGTTAGTTCTATGTTTTCCCCTCCACTGCTTTCTTACTCTTTGTTTGGATTTACTAAATTTGAGCCGAAAGTCTTTCAAAAAGCAGCCTTTCTACCTCCATGAGGTAGCGATTAGGTCAGTGTACACTCTATCCTCCATAGAACCCTTTTGTGGGATTCAGTGGGTATATTGTTGTTGTTGTCTGCTAGTTAAAAAGAATTTCCTTTTTAATTTTCCATTGAGTTTCAAGAACTGTTATTTTCTTTTTTCCCCTTCTTTTTATTATTATTGGATCTATGGTTTGGAAAGTTTTAATTTAGGGTGTGTGTTCGTTACAAAGGGAAATGCTTTTTTGAAAAAAGTCAGTTTCTTATTTTTCCGTGTTTTTAGTATTTAAGCAAAACATATTATTTTAAAAACATTTTTACATACTCTAGATAGTGAAATACTATGGAGATGGGGTTGTAGGTGTGGTGGGGATGGGGATGGGGCTAAGAGGGATGGGGTGAAGATGAGGTGTGTTGTGGAGGGTAGGGGAGATTAAATCAATGTGAAATCCCACTTTTAGAACTTGTTTTCCCTACTTTCCACTAGGCAAGTCATTTTCCTCATTTTTTTTCCACGAAGTTCCTCATTTTCAAGGAACTTGTTTTCCTAGAGAAAATGATCTCCAATTTTTTTAACCAACTGTACAGGGGAAAATGAGGAAACATATTCTGGGTCTTGTTTTCGTCCATTCCGGACACACCCTTATGTTCAAATTAATGACTGTCTTTTTCAAATTACTACAGGTAACAGAAAAAAATTGATTACGACAAATGTGAAAGTTCACCACAGACCAAGCTAATCATGTAGAGAAAACTGTGCATGATATTTTTTTTCATGGAACTGCTCTGTGTTTTAGCTATCAACGTAATCCTAGAATAGGAAATGATCTTCGGCACTGTTTTATGCAAACTGCTCATTTGTTATAAAATTAAGCCGATCAGACCTTTTTTAAAAAATAATAATTTTGAAGACCAAGTTAAGGTGGAATGCAGTATGTTTTAATCTCTTCTCCACCCCTCCTAGTACCATTTACCCCTCATATTTTTATGACTTGCAGCAGTGGTGATTTTGCACATTCAGATAACTAGAGACCAGAGAGAACAATATAAAAAAGGAAATGGAAGTGTAATCACCTATCTGTTTAGTATGTGCAAAGAAGAGAAAGAGACAGTCTCCAATCAGCTTTTTATTGAGGAGTGAGTGGAGAAAATTGTTTCCCAGTAGGTCTCGTAAAACAATGGCTAGACAAGTAACAAACCTCTTATCTATCCCAAGCTAGCTCTCATAGCTCCCCTGATTTTAAACAGTACATGTTTCTACTTTTGGGTAAACCACTAAAAACTTGTTATAAAATTACTTTAAGAAATTTAAATTTTGTAAGTTTTATATTGGAACTTCACCCTTCATCGCAGATGTTTCTGACCTTTAAATTGGGGTGTTATTATTTCATGCCTTAGTCCTGTTTGAATGTTTAGAGATGATCAAAGACATTTTCTGGAGTACGATAAAAGTTGGCAATTCTGCCTGACTATGCCAAATGAGTTGGAGATATCACTGCAAAAGAAACAAAAATGGCAAAGTTAACACTAGCATTTGACAGGATGCATTTCTTATCCTCTTTTGTATGGTGTGGTGATGTTTCTACCTCAGGCTTTGTTTTTTCTCCTGGCCTCCTGTCAGGTTTCTCTGTATTGCTCTTCTTTTATGTAAATTGGATCCAAGCAACTCTGTCATGATCCTGCTTATGTGCTGACACAGGCGGCTTGGCCTTGGAAAGTTATTGGGATTTAAATAACTTGGACATACGTGCACTATATTATGAAGTTGATCTATTTACCAGCACATGCAGATGTATCCGATAGATGTTTGCAGTATCCTGTTTCCGATCCTCTTATCCCAGTTCCCCATTATTTTTTTCCTTTTCTGATAGAATATAAAATGTGACAGTTCCAAACTTCCATGTCATCTGACTCTATACTACACCTATTGTGGTCTAGAATCTTTCAAGTTGCCTGGAACTTTGTATTGTGAAATATTGGCGTTTTGTCATATTGCAGTGAATTTTAAAAAATTCGTGCAGAAGCTTCATTTCTTTTGTCTAATTCCTGATGGAAAAATATAGAAAATCTTTTCTTGACGACATGAATCCTATATATTTTTCTATGCTTGTGCAGGTTATGAAGGAACTATGTCGTTCAGAAAACTCAGCATGGGTTTTGGGAATCAGTGACAGCAATCCACAACAGTAGTCTGCTATTTTTGATTAAGTCGTACAGGTCATGGGAAGTTCACTGCTAGCTGCAGAAATTCTCAATGCTGAGGAGAAGTTGGCTTTTCTTGAAGTTCCACTTTACTCTTGAGAGTCATAATTGTTCAGTTTTGAGGTTAACACGGAGTCTCGCGTATATGGTTGAGCTGTTGATACGCTTCGCGGTGCATTTGCAAATCTGGGAGAAAATTTAGTTAGGATTAGCAGATGTCAAGCCTTTTTTGCTCATTCTTTTATCATTCAATTTATTCTTTTCATGAACGAAAATATAGTCAGATGTTTCTTTTCAATGTCTTGAATATCTCTGTTAAAATGTATGAATTGTTGCATCTCTTTACTTGCAGAAGAAAATCATTCAGCATATTTGTACCATCAGAAGAAAAATACAAGTTAAAAAGTTTGCCGTTCTTGTAATTATATACGTATTTGATTCACC</genome_strand>
        <mrna_strand>TTCACTTTTCCATCCAGAAAATTGCAGAGATGGATTTGGACTTCGACGGTGCAAGTAAAGTCCCGAGCAGGCAAGCCCGTTTTGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGCGAAACACTGCCATTGAAGGTAGATTCAGATATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAACAGTTGAGGACGACGTTCCTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAG.........................................................................................TTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGATTGGATGAAAGATGCCAAGAC...........................................................................................................................................GTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTCTACAAAATGGGTGCCATCATCTACTTGCGCTGACTTTGCTGTTGGGATCTTGATTGGTGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACCTCAATCCTGTTCATGCAGTTGTACAGCTCCGACCATCACTGCAGCATCGTAAGGAAAGTGAGTTGAAGAACCTTACCACCAGCAATGATGAAAAAAGTTGTGAAAACGAAGACGTCAAGGAGAAAAAGCCTGTGGGTCCGTCAAAGAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACTACCTGGGAACTACAAGGATATTGGAGAG...............................................................................................................................................................................................................................................................CATTGGTTACATCTAAAATACCATGGGACTAGGAGTGACATTTCAGCCAGACATCTTCAGAAAATGGCCATGGAGGGAGGCTCCCCAGTACCATTTTCAATGATCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGATTATCTGAACGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTCAGAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTCTTGAG....................................................................................................................................GGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTCTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCAAAAAGTTCATTAGTCTATGACACAAACAACGGAGTCGAAGTTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTAATCAAGAAGTCACTGTTTGGCAGGAGGCCTGAATTCCTTAAAGCTGCGACACCAGTTCTAAAATCATTAGCTGTTGAGAGGCCTGACCTGGATGATTGGAAGCTCAAAGAGCTTCCTGACAAGAAATTTGAAAACCTTTATGGTGATGTTGTTAGAGAGCAGCAAGCTATCTGGGAGTCCATGGGGAAACAGATCAATGATATTATGCATGGAGGAAGAAACAGGCCTACTTTGAAGAATCCTCTAAACCCAAAGGCCAACATTCCTGCGTTGTCAAGTAGTGATAAGCCCACTCCTACGACATTTTTGAGAACATCTCTGTCAGAAGAAATTCGTGGAGCTTTACCAAAGGCGCTTCAAAATGTTTTTAGAATCCATAAGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTTCAAATTTGCGAACTGATGGAAAAGGAAGATCCAAAGAAAGCTATAATTTCACCCGCGGGTGTTTCTGATGCACATCAAAAGGAGATAGAGGCAGTGGTTAATCAGATTGCTGTAAACATCCACGGTGTCTATGTTTTGAAGTCATCGCCAGATAATCCACAGTATGATGCATTGAG.........................................................................GAAAGTTGTAATTGATCTTTTTATGGCCGAAGGGTCGACTGCAAAGCTAAAGAAAGCATCTATAGTTGAAGCTGCCAAGTTGCAACTGGGAAGGGATGTTACCACTGTGGAGTTTCAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGAAGGAACTATGTCGTTCAGAAAACTCAGCGTGGGTTTTGGGAAGCAGTGACAGCAATCCACAACAGTAGTCTGCTATTTTTGATTAAGTTGTACAGGTCATGGAAAGTTCACTGCTAGCTGCAGAAATTCTCAATGCTGAGGAGAAGTTGGCTTTTCTTGAAGTTTCACTTTACTCTTGAGAGGCTTAATTGTTCAGTTTTGAGGTTAACA-GGAGTCTCGCGTATATGGTTGAGCTGTTGAAACGCTTCGCGGTGCATTTGCAAATC----------------T--G----G--GATGTCAAGCCTTTTTTGCTCATTCTTTTATCATTCAATTCATTCTTTTCATGAACGAAAATATAGTCAGATGTTTCTTTTCAATGTCTTGAATATCTCTGTTAAAATGTATGAATTGTTGCATCTCTCTACTTGCAGAAGAAAATCATTCAGCATCTTTGTACCATCAGAAGAAAAATATAAGTTAAAAAGTTTGCCATTCTTTTAATTATATACGTATTTGATTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594355" ref_strand="+" ref_description="SGN-U594355 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|9858779|gb|AAG01126.1|AF273333_11 (e_value=1e-10) BAC19.11; ">
      <seq>caggcaaaactcatttctagccctagttttgtactgaagagaaaaattagggtaaaaacgtagtggaacgatgcaggaatatgaaggtaatggagaagatatagagaataatggttcttctccttacagtgactccaagtctcagcatacttctcgtgaccccgagaaagaaaggggctcatcaagaagcagggagaaggagagggagaaagggcgtgataaagaccgggacagggacaggaatagagatagagatagagacagggacagaggtaaggaaagggacaaagatagggatagggacagagagagggagaaggaccgtgatcgtcatcacagagatcgtcatagggatcggagtgataggagggagaggatcagagatcgagatgaagatgatcttcagcgaactcgagattacgataggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="159874" stop="161577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160172" g_stop="160316" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="160317" i_stop="160992" i_length="676">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160993" g_stop="161273" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="426" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U594355" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160172" e_stop="160316"/>
          <exon e_start="160993" e_stop="161273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCAAAACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAGGTATTTTTTTTTTCGATAAAAAAATGGATTTGAACTTATAAAGGTGATGAAGTAATACACGTAGATATTTGCTTTAATTAGGGTTACGTATATGCTTTTGATTGTTTTATGTTCGATGACTGGGAAAGTTTTATATGAATTGCTTGATGGGATGCGATAGCTGGGTATATCTCTGTCTCTGTGTGTAGTTATGGTTTATGGAGTGTTGTGTTGATGAATTTCTTTTCTTAAGGGCGTTTATTCGACTACTTGTTCCGCTAGAAAGAGTGATGGGATTTGGAATAGAAGCATCAAAACATGTATAATCGGACAATTATTTTTTGAATTCAAATTACACTGTTGGAGTTATGGAATAGAGCCGATTACATAAAAGATGTAGGCTGTTTTTGTTGGTGGTCGGGTTGAGGAGTATTGCCTATGGTTGGCCTCTGGTAGGATCCAGAGAGGAGCTGGTTTGCTCCTGTTGGACAGCAGTTCTGATCTTTAACCTGTAAACGTAGCCAAAACAAAAATTTTATGATATAAAATTATTTTCCCTGATTTGTGTTGCTCTTTGTTTTAATTTCCTTAGCTTTAGATTAGTATGGCTTCTGCTGTATGGTATTCCGTTTTTGTTTATATTTTTAAGTTTTGTTGTTCTCTTCATAGACTAAACATTTTTATTATCATTTTCCAGCATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG</genome_strand>
        <mrna_strand>CAGGCAAAACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567081" ref_strand="+" ref_description="SGN-U567081 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|156070797|gb|ABU45209.1| (e_value=0) unknown; (*ATH) AT4G36690.1 (e_value=0) | Symbol: ATU2AF65A | U2 snRNP auxiliary factor large subunit, putative, similar to U2 snRNP auxiliary factor, large subunit (Nicotiana plumbaginifolia) GI:3850823 | chr4:17294019-17297725 REVERSE | Aliases: AP22.29, AP22_29, ATU2AF65A; (*SWP) sp|P26369|U2AF2_MOUSE (e_value=1e-71) Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2; ">
      <seq>gctcatttctagccctagttttgtactgaagagaaaaattagggtaaaaacgtagtggaacgatgcaggaatatgaaggtaatggagaagatatagagaataatggttcttctccttacagtgactccaagtctcagcatacttctcgtgaccccgagaaagaaaggggctcatcaagaagcagggagaaggagagggagaaagggcgtgataaagaccgggacagggacaggaatagagatagagatagagacagggacagaggtaaggaaagggacaaagatagggatagggacagagagagggagaaggaccgtgatcgtcatcacagagatcgtcatagggatcggagtgataggagggagaggatcagagatcgagatgaagatgatcttcagcgaactcgagattacgataggcgaagagacaatgacaaagatagagaggaccgacagagacacaagcctagctctaggggtagatccgagcatagatcaaggtctagatcacggtcaccatctaagagcaaaaggatcagtggttttgatatggcacctcccaccagtgcattgctatctggcgctactgatgttgcaggtcaagttcctgggaccactaacccatcaatacctggaatgttttctaacatgtttcctctagcagcaggccagtttggagctctccctattatgccagtccaggcaatgacacagcaggctaccagacatgctcggcgagtttatgttggtggacttccgcctactgcaaatgaacagtcggttgctaccttctttagtcatgtcatgtatgcaatcggaggaaatactgctggtccaggggatgctgttgtcaacgtttatataaaccatgagaagaagtttgcctttgttgaaatgagatctgttgaggaagctagtaatgcaatggctttggatggtgtcatttttgagggcggaccggttaaggttagaagacccagtgattacaatccttccttggcagctacacttggtcctagtcaaccgagccccaacctcaacctggcagctgttggattgacaccaggttcttccggagggcttgaaggacctgaccgtatatttgttggtggtttaccctattattttacagaatcacaaatcagggaacttttagagtcttttggtcaacttcgaggatttgatctggtcaaagatagagaaactgggaattcaaaaggttatgctttttgtgtgtaccaggatgtctctgttactgatattgcttgtgcagctcttaatgggattaagatgggggataaaactcttactgttaggcgggctaaccagggcacaacccaacccaaccctgagcaagagagtgtattgttgcatgcacaacagcagatagctttgcagaggttcatgttacaacctggtgcattagccacaaaggttttgtgcttgacagaagtggttagcgtagatgagctcaaagatgatgatgactatcaagatattttggaagatatgaggattgaatgtggtaaatttggagctctcctgaatgttgtcattccacgtccaaatcctaatggcgagcctacacctggactcgggaaggtattcctggagtatgcagatgttgacagttccagcaaagctcgccaagggctgaatggaagaaaatttggtggtaaccaagttattgctgtcttctatccagagaacaagttctctgagggagattacgaggcttaactgtaaccactatagctgtgacataatattcagattattacagggagttgtttgcatgtcctataggaattatatcccccttttgacaaagattattagtgtcctgtctttttttcttttgcttttttgttttggtgagcatgggatattttattctggattaaatttagtttgtggttaaagctggtgtaaagtatcaaacaggaatagtgttatcgggttgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="159881" stop="166507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160180" g_stop="160316" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="160317" i_stop="160992" i_length="676">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160993" g_stop="161273" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="418" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="161274" i_stop="161563" i_length="290">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="161564" g_stop="161671" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="526" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="161672" i_stop="162326" i_length="655">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="162327" g_stop="162397" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="597" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="162398" i_stop="163006" i_length="609">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="163007" g_stop="163080" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="671" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="163081" i_stop="163157" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="163158" g_stop="163202" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="716" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="163203" i_stop="163288" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="163289" g_stop="163348" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="776" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="163349" i_stop="164062" i_length="714">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="164063" g_stop="164123" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="837" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="164124" i_stop="164211" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="164212" g_stop="164324" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="950" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="164325" i_stop="164676" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="164677" g_stop="165123" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="951" r_stop="1397" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="165124" i_stop="165229" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="165230" g_stop="165365" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1398" r_stop="1533" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="165366" i_stop="165469" i_length="104">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="165470" g_stop="165537" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1534" r_stop="1601" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="165538" i_stop="165841" i_length="304">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="165842" g_stop="166207" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1602" r_stop="1967" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U567081" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1967</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160180" e_stop="160316"/>
          <exon e_start="160993" e_stop="161273"/>
          <exon e_start="161564" e_stop="161671"/>
          <exon e_start="162327" e_stop="162397"/>
          <exon e_start="163007" e_stop="163080"/>
          <exon e_start="163158" e_stop="163202"/>
          <exon e_start="163289" e_stop="163348"/>
          <exon e_start="164063" e_stop="164123"/>
          <exon e_start="164212" e_stop="164324"/>
          <exon e_start="164677" e_stop="165123"/>
          <exon e_start="165230" e_stop="165365"/>
          <exon e_start="165470" e_stop="165537"/>
          <exon e_start="165842" e_stop="166207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAGGTATTTTTTTTTTCGATAAAAAAATGGATTTGAACTTATAAAGGTGATGAAGTAATACACGTAGATATTTGCTTTAATTAGGGTTACGTATATGCTTTTGATTGTTTTATGTTCGATGACTGGGAAAGTTTTATATGAATTGCTTGATGGGATGCGATAGCTGGGTATATCTCTGTCTCTGTGTGTAGTTATGGTTTATGGAGTGTTGTGTTGATGAATTTCTTTTCTTAAGGGCGTTTATTCGACTACTTGTTCCGCTAGAAAGAGTGATGGGATTTGGAATAGAAGCATCAAAACATGTATAATCGGACAATTATTTTTTGAATTCAAATTACACTGTTGGAGTTATGGAATAGAGCCGATTACATAAAAGATGTAGGCTGTTTTTGTTGGTGGTCGGGTTGAGGAGTATTGCCTATGGTTGGCCTCTGGTAGGATCCAGAGAGGAGCTGGTTTGCTCCTGTTGGACAGCAGTTCTGATCTTTAACCTGTAAACGTAGCCAAAACAAAAATTTTATGATATAAAATTATTTTCCCTGATTTGTGTTGCTCTTTGTTTTAATTTCCTTAGCTTTAGATTAGTATGGCTTCTGCTGTATGGTATTCCGTTTTTGTTTATATTTTTAAGTTTTGTTGTTCTCTTCATAGACTAAACATTTTTATTATCATTTTCCAGCATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAGGTGAGTTCAAATGCAGTTCTAAAAGTTAGTTGGATTCATGTTCTGTACCTCTTTTCAGGTACTCATGTATGATGATAATACATAATTGTGGTATTCATTTTAAGAATCATGTTTGATTTAATTTTGAAGTGCTGTTTTTTCTTTGTCACTGTTCTCTATGCTCGACATGCTTTAGTGTGAGCTTCATATGAGATTCACCATTCATGTGTTTGGTGCTTGCTGATTTAGTGTCTCAACCAATTTCTTATCTTTCTTATGTTCTTGTATATGATTGTTTATTTATCCCTCAGGCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAGGTTTGTCTTACTCCTATATCTTCTTGTAGGAGCATTATCAAGATACGTTTTATTGGTTATTTTTGATGTCCTAATGCTCCGTTAGACTGGTTTCTTTCTTTTGAACTTTGAGTGAAGCAAATTGTAATTTGCTGTGATGTTGGCAAGACTGGTCATTGGACTATTTGATCTGTCAATTTGGAAAGAAATCACAAGTGTTGATGTTTTAGAAATTAGAACTATAGATAGAATTGGGCTAAAACATTAGGTGAAGACTTTGTTATTTGGCCATATGAGCTGATGTTGCCATGTTGGCTTACAAAAGTATTTGTTCTTGCAAAATCTTAAAGCTACTATGATGACTTTCACTCTCTAATTACTGGAACCTATTGGATTTTAACTGTTTGTTCTTTTCCTTTATTTTTTTTTCCTTTTGAATTCTCTGGGGTAAAGTCTGTTTATATTCTACTTTACATTCTATTGGCCTCCCTAGACCTCACTTGTGGGATTGCACTGGGTATGTTGTTATTGTGATTTTTCTGTCAGTGGCTAACTTCTATACAGATCGTAGAAAGTTAAATTTTCAACCATTTTATTATTTCATTCTCAAAAAGAATAATTCATTCTCAAAAAAATTTATCACTTCGCTGTTGGTACTAATGATGGTTCTTTTCAGCAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAGGTTTATAATTTGTGACATTTCCTATTCTCTCTCGCTTATGGGCTTCTTTTACCTGAAAAGCATTTTATTAAATGTTGCTTTTTCAGGCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAGGTAGCAAACTTCCTCCCATGACTTTGCACATTGGCTGTTCTAAGATTTTGTCTGCTCAAGTTTGGAAGCCGCTGTTGTCTTTCTAGTTATTCTTTGTGGAATCATTTTAGTTTTTCCTTCACAAGCTACTGCTTGTAATATGGTGCAATATAGTGTCTTCACGTACATTTTCACAGCTGTGTATTCCATCTAATTAACTTTTTGACATAAACACTAACACATAGCTTTTCTGATTTACTGATGTCGTGCAGTCTGAAACCATTTGTAGTTGTAGGTATTTTTGTGTTTTTTTGCTAGACATCTTTATATTTTCTTCTAAATATATGGAATTGCTGCATCTGATCCTATAGTCTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTATATTCTACCCTCCCACACCCCACTTGTAGGATTTCAGCAGGTATGTTGTAGTTTTGGTTAGACCATTAATTCTTATGTTAGCATTTTTGAAATTTTATTCTCACGTGTGATGTTTCGTTCTCCATTGTAGTATTTTTTGTACTATGTCGGCCAAATTAGGCTTTTTTATGTGTCGTGTATGGAATCATCAAGTTTTGTCGTCCTCCAAAATTATCATTTGTTTGAGCTTCCTAATTTCATGATTTGGGTTAATTCTGCACTGCCATATTTTTGAGTACTTCCTATGTTTGCTGAAAGTTAATCTATATGCAGTCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAGGTTAGTTCATAGATTTATGTGGTTTTCCTTCTAGTATCACTATAAGTTTTCCTTTTTTAGGTGCTTAAAATATTGTTGAAATTTTCAGGGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAGGTACTAAAAATCATCTGATAGGTGTTTATATGTTAGCTTTCTACTTATGGTTGTAGGGTGTTCCTTGAAAACGAAGTAAAGAAAGAGAAGATTTTAGTTTCACCTCATTCACAGACTCTGATTCTCCCTATCTTGTTCGCCACCAGATAAAGTTTGGAACTAATGTCCCTTTGCCCCTTTCCCATTATATAATCTGGAGTCTGCAAACCCTGTCTTTCTGTGGTTTTTTATTTGTTTGTCTTCTTATGGTGATTTGTGGTGGTGGATAATGTATGACCAAAGCATCATGCTGCATTATGTCAAGTATTCTTATACATACATTTGTTTTCTGTGCACTTGATGTTTTGTTCAGGGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAGGTAGAGATACTTCTATGCTCTTCCATTCAGTTTTCAAGTTCTTAGGCTTTAACACTTTTATAAAAAGGACTTTCAAGCTCACCCTTAGTGTTTTTTTCTTCTACAGAGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTGGTGAGTAGCCATATCTAGTGTTCTGTTTCCTCTAGCATACCTTATGCCTTGAACTTAGGTTGAGAATTTTAACTTGTATTTGCTTTTGTATGTCTACTTTGCAGGAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAGGTACATGTCTGCTGATCTGTTGAGTCATCATCTAGATTAGTTACGTCTACAATCTGATCTTGACGTTCCTATATATGTTTGTTAAAATGAGATTCAACTTGTTTCTAATTTTCTTCACAATGACCAGCTGAAAAATGACTATTCTGTTAAGTGTCTTTCACTACGATTATTTATTGCTTCCTTAAACTGTTTGTGCATGGTTTGGAACAATTACAAAAGGGCTCCAATACCTTGCTCTTTTTTTTTTCTGGTGGTTTCTACTTCTGAATGTACAATGGTTAAGACTTGTATCCTGGTTCTTCAGGTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGA</genome_strand>
        <mrna_strand>GCTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG..................................................................................................................................................................................................................................................................................................GCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAG.............................................................................TTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG......................................................................................GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG........................................................................................GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG................................................................................................................................................................................................................................................................................................................................................................GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG..........................................................................................................AGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG........................................................................................................GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG................................................................................................................................................................................................................................................................................................................GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567082" ref_strand="+" ref_description="SGN-U567082 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|156070797|gb|ABU45209.1| (e_value=5e-86) unknown; (*ATH) AT4G36690.3 (e_value=2e-89) | Symbol: None | U2 snRNP auxiliary factor large subunit, putative, similar to U2 snRNP auxiliary factor, large subunit (Nicotiana plumbaginifolia) GI:3850823 | chr4:17294019-17297725 REVERSE | Aliases: None; (*SWP) sp|P26369|U2AF2_MOUSE (e_value=1e-24) Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2; ">
      <seq>tagtggatcccctaagatgcaggaattccgcacgaggttttgatatggcacctcccaccagtgcattgctatctggcgctactgatgttgcaggtcaagttcctgggaccactaacccatcaatacctggaatgttttctaacatgtttcctctagcagcaggccaggtactgtgacagatccttcttagcataccttcactggttatctatattctcatatatttgttttgtggcttctctagtttggagctctccctattatgccagtccaggcaatgacacagcaggctaccagacatgctcggcgagtttatgttggtggacttccgcctactgcaaatgaacagtcggttgctaccttctttagtcatgtcatgtatgcaatcggaggaaatactgctggtccaggggatgctgttgtcaacgtttatataaaccatgagaagaagtttgcctttgttgaaatgagatctgttgaggaagctagtaatgcaatggctttggatggtgtcatttttgagggcggaccggttaaggttagaagacccagtgattacaatccttccttggcagctacacttggtcctagtcaaccgagccccaacctcaacctggcagctgttggattgacaccaggttcttccggagggcttgaaggacctgaccgtatattttgttggtggtttaccctattattttacagaatcacaaatcagggaacttttagagtcttttggtcaaacttcgaggatttgatctggtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="162036" stop="165218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162339" g_stop="162397" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="93" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="162398" i_stop="163006" i_length="609">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="163007" g_stop="163202" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="289" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="163203" i_stop="163288" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="163289" g_stop="163348" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="349" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="163349" i_stop="164062" i_length="714">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="164063" g_stop="164123" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="410" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="164124" i_stop="164211" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="164212" g_stop="164324" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="523" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="164325" i_stop="164676" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="164677" g_stop="164918" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="767" r_length="244" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U567082" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162339" e_stop="162397"/>
          <exon e_start="163007" e_stop="163202"/>
          <exon e_start="163289" e_stop="163348"/>
          <exon e_start="164063" e_stop="164123"/>
          <exon e_start="164212" e_stop="164324"/>
          <exon e_start="164677" e_stop="164918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAGGTACACGGTCCATCAATTTCATTACAATTTAAGTATCTTGAAAACTGTCATGTTTTTCCTGGACATAGTGTGGAAGTTCGTATCGAAATGCATGGTTACATTTTGGTAAGCTTTTTGTTTCTTTGACTTCCACCTATACTAGTAGCGAGTCCTAGTTAGATTAGCTCTTTTGCTTTTCTTTACTTTTTACTTGGTGAAATAATTCTGAGACTGAGGGTTTTGGTTTCTTGTTGTGTTTGGTGTTTGTTTGTTTGTTTTGTATTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTATATGTACAAGGAAGAATCGATACAGGTCTTGTTCATCTTCAAGGAATTGCTAGTTTGGTAGTTTACAAATATTTTCTCTAGTAATGAATTCACATTAAAATTCTCCATTCCTAAAATTGTTTTACTTCAATTTGATTACAAACTCTTCTATTTTTTCAAATACATCGAAAGACAAAAAAGATTTTAGTGTAAATATCCATTTATTTTAGCCACTTGAAGTATGTATGTATTTTCACTCACTGATTTGTAATTTACATGCCGCGCAGGTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAGGTTTATAATTTGTGACATTTCCTATTCTCTCTCGCTTATGGGCTTCTTTTACCTGAAAAGCATTTTATTAAATGTTGCTTTTTCAGGCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAGGTAGCAAACTTCCTCCCATGACTTTGCACATTGGCTGTTCTAAGATTTTGTCTGCTCAAGTTTGGAAGCCGCTGTTGTCTTTCTAGTTATTCTTTGTGGAATCATTTTAGTTTTTCCTTCACAAGCTACTGCTTGTAATATGGTGCAATATAGTGTCTTCACGTACATTTTCACAGCTGTGTATTCCATCTAATTAACTTTTTGACATAAACACTAACACATAGCTTTTCTGATTTACTGATGTCGTGCAGTCTGAAACCATTTGTAGTTGTAGGTATTTTTGTGTTTTTTTGCTAGACATCTTTATATTTTCTTCTAAATATATGGAATTGCTGCATCTGATCCTATAGTCTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTATATTCTACCCTCCCACACCCCACTTGTAGGATTTCAGCAGGTATGTTGTAGTTTTGGTTAGACCATTAATTCTTATGTTAGCATTTTTGAAATTTTATTCTCACGTGTGATGTTTCGTTCTCCATTGTAGTATTTTTTGTACTATGTCGGCCAAATTAGGCTTTTTTATGTGTCGTGTATGGAATCATCAAGTTTTGTCGTCCTCCAAAATTATCATTTGTTTGAGCTTCCTAATTTCATGATTTGGGTTAATTCTGCACTGCCATATTTTTGAGTACTTCCTATGTTTGCTGAAAGTTAATCTATATGCAGTCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAGGTTAGTTCATAGATTTATGTGGTTTTCCTTCTAGTATCACTATAAGTTTTCCTTTTTTAGGTGCTTAAAATATTGTTGAAATTTTCAGGGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAGGTACTAAAAATCATCTGATAGGTGTTTATATGTTAGCTTTCTACTTATGGTTGTAGGGTGTTCCTTGAAAACGAAGTAAAGAAAGAGAAGATTTTAGTTTCACCTCATTCACAGACTCTGATTCTCCCTATCTTGTTCGCCACCAGATAAAGTTTGGAACTAATGTCCCTTTGCCCCTTTCCCATTATATAATCTGGAGTCTGCAAACCCTGTCTTTCTGTGGTTTTTTATTTGTTTGTCTTCTTATGGTGATTTGTGGTGGTGGATAATGTATGACCAAAGCATCATGCTGCATTATGTCAAGTATTCTTATACATACATTTGTTTTCTGTGCACTTGATGTTTTGTTCAGGGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATA-TTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTC-AACTTCGAGGATTTGATCTGGTCAA</genome_strand>
        <mrna_strand>AGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG......................................................................................GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG........................................................................................GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG................................................................................................................................................................................................................................................................................................................................................................GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAAACTTCGAGGATTTGATCTGGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576090" ref_strand="+" ref_description="SGN-U576090 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|9858780|gb|AAG01127.1|AF273333_12 (e_value=2e-25) BAC19.12; (*ATH) AT5G66730.1 (e_value=2e-16) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr5:26658878-26661628 REVERSE | Aliases: MSN2.12, MSN2_12; (*SWP) sp|Q700D2|JKD_ARATH (e_value=2e-13) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD; ">
      <seq>ggactttttttgcggtctctgttttcacattaaatttcctctctttctctctattgatttccgagccgccgacttgcgttgtcacaactgcttctcattttcatcgagtttttcttcattacttttacttataagcaaacccatttactcgaacttagcgactttcccggcagaaagttcacgccggtgattgactttctggtgattttggaatctgggtttttcagctaatttctatgttatggggatttgctattttagcttggtttgatcaaaactggtagttgggtgtatgaaagaaagaaaaacgaaaaagcaagattgactggtagatacggcgaaaagagagaaagtattgactcccccaagaaaagattgatatcaaaaaggtttttttaacataaatgttctaaagatttgcttttttgagcaacccccccccccaaaaaaaaaaaaaaaaaacatgccggccgacccagataactcatccgccatgaacgattctacaggctcaggtgaagcaagcgtttcgtcttcaggtaatcaagtagttcctctgaaagaatcagccaagaagaaacggaatcttcctgggatgccagatttgattttctgtttttggttgctttgattagatcccgatgcagaggttattgctttgtcaccaacaactttgctggcgacgaacagatttgtttgtgaaatttgtagtaaagggtttcaaagaaccagaatttgcagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="170441" stop="171843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="170740" g_stop="171341" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="171342" i_stop="171399" i_length="58">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="171400" g_stop="171543" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="745" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U576090" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="170740" e_stop="171341"/>
          <exon e_start="171400" e_stop="171543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTTTTTTGCGGTCTCTGTTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCCAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAGGTAAATCATGTTCCGTTACGATTCTTGATGAACCCAATTTTACTAATATTCAGCGAAGATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTGGCGACGAACAGATTTGTTTGTGAAATTTGTAGTAAAGGGTTTCAAAGAGACCAGAATTTGCAGCTTC</genome_strand>
        <mrna_strand>GGACTTTTTTTGCGGTCTCTGTTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCAAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAG..........................................................ATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTGGCGACGAACAGATTTGTTTGTGAAATTTGTAGTAAAGGGTTTCAAAGA-ACCAGAATTTGCAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576548" ref_strand="+" ref_description="SGN-U576548 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|9858780|gb|AAG01127.1|AF273333_12 (e_value=3e-110) BAC19.12; (*ATH) AT5G66730.1 (e_value=1e-26) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr5:26658878-26661628 REVERSE | Aliases: MSN2.12, MSN2_12; ">
      <seq>accgtcaactgccgtaatgtcatttgcttcctctgttcaaaatcgagaattgcgggagaatccagtcacaaattctgctggagctgctacgaagcaagttctggaggaagcagcagcggtagcaagcttgactggaaactgtagcagctcttgtagtaatggaagtagtagcagcaatgtctttggaagtttgtttgcttcatcaacagcttcgggaagtttgccatctcaagctcctgttttttctgatatatttcgagccatggcgcctgagcacactcttgagatggcaccaccttcatctacagaaccaatatctctcggcctagcgatgagtcacagttcgtcaatttttagaccagctggtcaagaacggaggcaatatgctcccgcaccacaaccagctatgtcggcaacagcattactgcagaaggcagctcagatgggtgcagcagcaaccagctcatcgttcttgaggggcattggggttatgtcctccacgtcatcttcaaacggtcatcaagaatggagtgggagacccagtgatgccaatggtgcatcattagctgcaggtcttggtcttggactaccgtgtgacgctggttctggtctaaaggaattaatgttgggaactccctcggtgtttggtcccaaacatcccactcttgacctccttggattaggaatggcagctagtgtcggtccatcgcctggattatctgcccttttaacatccatgggtagcaatcttgacatggtgacttcagctggatcatttggtagtgcagatttcagtgggaaagacttgggaagaaattcatgatatcttagagtcaggtttaatttattctgtataggacaatgaatttcacttgatgcagcaaaaaacatattggcaagctctcagccccaaagatttgagcataggatggcaggaggaaagaaggcagttggacacttttaagattgttctactgtctcctttgtgtaggaaaagtagaaaggttttttttctgctgtacagtagaagttgaatgtatagctgtattaaaactcctctgctttttgttacagatgaagctgttaatgtgtttagtatataatttgctataagcatatttaaccaagagaggctcatctagtgggaatttttatcaaatggtatctctatttcagacagtgcaaatttttataaaatttgtataattcagatgcataactaatgcagacagggttaaactctttgagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="+" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="171840" stop="174150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="172140" g_stop="172186" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172187" i_stop="172648" i_length="462">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="172649" g_stop="173851" g_length="1203"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="1251" r_length="1204" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="+" ref_id="SGN-U576548" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1250</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="172140" e_stop="172186"/>
          <exon e_start="172649" e_stop="173851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAGGTACCTTCTCTGCGTTTGATGTTTGTCGCATTTGTGTTTGTTACATATCAAACAAAATAACTTTGTTGTTTCTATATCTTGGAAGCTAGTTAATTTTGTCATTTATTGATCTTTGTTCTTATCTGTATTTATTCTTTGTACAAAATCATTTATCTTTTTCTATTAATCAATCAGAATCTTGTAGACAGAAGTAGGGTCTAAAATAGGAAGGAAAAAAATGAAGAAAATGATCGGATAATTAATTATAAACTAAGATTCAATGTCATGAAACCGTTGGCTAAAGAAAGAATAAGTAGTATAATGCTTAAATAAGGTAAAGATTGTAAAGAAAAGATACTATATTTGGATCTCCTTTTGCAATAGATAATGTTCTTTTTCTATGAAAAGTTTTAACTTTCTCTGTTTCCTTAAAGAAGTATGCTTCTTTTCATCTTTTTAATATAACTGCTACAATTTGTGCAGAATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATGTCCTCCACGTCATCTTCAAACGGTCATCAAGAATGGAGTGGGAGACCCAGTGATGCCAATGGTGCATCATTAGCTGCAGGTCTTGGTCTTGGACTACCGTGTGACGCTGGTTCTGGTCTAAAGGAATTAATGTTGGGAACTCCCTCGGTGTTTGGTCCCAAACATCCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAG-CAGTGTTAAACTCTTTGAGCAA</genome_strand>
        <mrna_strand>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCTGTTCAAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTCTGGAGGAAGCAGCAGCGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTTTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATGTCCTCCACGTCATCTTCAAACGGTCATCAAGAATGGAGTGGGAGACCCAGTGATGCCAATGGTGCATCATTAGCTGCAGGTCTTGGTCTTGGACTACCGTGTGACGCTGGTTCTGGTCTAAAGGAATTAATGTTGGGAACTCCCTCGGTGTTTGGTCCCAAACATCCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGACAGGGTTAAACTCTTTGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568990" ref_strand="+" ref_description="SGN-U568990 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ccttagagaggcagagcaagcaaggagagaagaggaagaagcagaaaaaagaaggcaggaggaggaagaatcaaggagagaggagaaagcaagaagaaggcaacaggaggaagcaaggaggagagaggaggaagaagcagcaaaaaggcaacatgaggaagaagcagagagagaggcagaggaagcaagaaggatagaggaggaagaagcacaaagagaggcagaagaagcaaggagaatacaacaggaggaagaagcagagagagcaaggagaagagaagaagaagcagaaacaagaaggaaggaggaggaggaggaagaatcaaggagacaagaggaggaatcaaggaggagtgaagaagaggcagcaagagaggcagagagggaaaggcaagaggaagctgaaagacaagaagaagctaggagacgggaggaagaaacagaagagaggcatcaacaagaagaaaccgaggaagaggagccaggccaacctgaaatgaacggatattcctcaaactagcctatgagtgtgttgtgtaactagtgtactcagcaagttctcaggagctgaatagtctctacgtttttgtataatctcatgtgtgtgtacgtcttttcatttacttttgctgtcatatttatgagtttatgtaataacaccgaaacaagttttcatagatcacttttccctggcaagtctccagcaatgtagcagaaggtgttaggatgttatctggatgaaagcagttcatacatttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0128E12-iyPDT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0128E12.1" temp_strand="-" temp_description="C02SLm0128E12.1  AC215492.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0128E12 sequenced_by:kribb upload_account_name:korea">
        <position start="178572" stop="177215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="178276" g_stop="177515" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0128E12.1" gen_strand="-" ref_id="SGN-U568990" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0128E12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="178276" e_stop="177515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</genome_strand>
        <mrna_strand>CCTTAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>44</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2683" PGL_stop="674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2683" e_stop="1890"/>
            <exon e_start="1784" e_stop="674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.703" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2683" e_stop="1890" e_length="794"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.703">
            <gDNA_intron_boundary i_start="1889" i_stop="1785" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="1784" e_stop="674" e_length="1111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2683" stop="1890"/>
              <exon start="1784" stop="674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572228" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTTTTCTTCTAGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTATATATAGCCTGTAATTAGATAGTTTCTCCAGTCATTCTAGCCTTCTTTTCCGCCGGATGAGTAACGTGGATTCCTTAAGCAGGTTGCTGGGGAGCAGGGTCGTTTTGCCCAAAGTATTGTCGATCAGGTATGAACAGCGTGATGGCTCGAATGATCCGCCCCTGGTAGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTGATACGTCTTCACAAGGAATCTTGGCTCAGATTGTGTAGAGGAGAGTCTTGATTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAGGTATAGGTGGGGCATAAAAGCCCTAATATCAGGGGTGATGTCCCGTTTTAAATTACCCTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTATATTTAATATAAATTGGATTTTTCGGGGTTTTGAGGGGGAGATAGCACGGATTTTTTTTTTTGGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAG : TCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCCTAACTGGTGTCCTGCAAGATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCATAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTCAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCATGCTATTATGCTGTTACATGATGTACATACCTTGAAGCTTAGAATTTGGGTGCACAGGCCCTTTGTTACACTTTTCCGGTTATATGCTTTGCCATGTTAGCACTGACTGGCTTTCTTTCTTTTTCCTGTAAATATCCGGTTGAGATATTTAGGTGTCTTTCTATGATGTGAAGTGATCCGGCATTTTCGAGTGTGTCCTGTTTGGACTTGTAACAATTTGTTTATGTATCTTTAGTTTTGGCAGAGGATGTATGTTTTGATACATGAAGCTTAAAAGTGCAGAAATGCTTTGTAGTTTTCTGAGGTTAATGATTTTACTTCTGTTTCAGTTG</gDNA_template>
            <first_frame> I  F  F  F  *  D  S  I  R  R  L  A  N  K  S  V  D  N  L  S  I  Y  S  L  *  L  D  S  F  S  S  H  S  S  L  L  F  R  R  M  S  N  V  D  S  L  S  R  L  L  G  S  R  V  V  L  P  K  V  L  S  I  R  Y  E  Q  R  D  G  S  N  D  P  P  L  V  V  R  S  L  D  S  S  S  Q  G  *  D  G  V  E  R  S  L  D  T  S  S  Q  G  I  L  A  Q  I  V  *  R  R  V  L  I  R  H  L  K  E  S  W  L  R  W  L  G  C  Q  M  N  L  N  S  W  R  C  W  M  D  F  P  V  I  I  R  S  V  E  S  N  T  H  R  K  L  L  L  Y  E  D  V  *  R  Y  R  W  G  I  K  A  L  I  S  G  V  M  S  R  F  K  L  P  C  Y  C  S  G  L  C  H  V  G  C  A  C  M  A  G  P  Y  I  *  Y  K  L  D  F  S  G  F  *  G  G  D  S  T  D  F  F  F  W  P  G  I  S  P  L  L  V  C  V  C  V  L  C  L  L  *  F  L  F  A  R  Y  A  L  H  R  Q  I  S  S  L  S  T  S  Y  P  *  F  A  A  H  P  N  V  S :   Q  G  R  R  R  L  *  R  *  T  F  K  I  E  H  R  F  H  Q  C  *  Q  L  Q  I  *  C  T  I  C  G  Q  N  L  L  G  F  R  Y  A  *  *  A  R  N  Y  G  C  L  D  S  *  *  *  T  S  G  M  L  R  G  C  L  S  L  I  *  F  M  I  K  H  V  Q  N  K  N  T  E  L  I  C  G  V  G  E  R  F  Q  L  C  T  S  E  I  L  I  *  K  I  F  T  V  H  T  L  R  Y  L  N  S  *  I  L  T  H  P  N  W  C  P  A  R  F  N  Y  K  K  L  R  T  E  I  Y  K  F  S  A  C  *  C  Q  L  S  L  F  A  R  V  V  V  A  L  H  Y  I  H  S  W  A  R  R  S  Y  *  I  A  V  L  Q  I  F  S  *  *  A  I  C  I  *  I  P  N  L  R  F  A  F  K  F  Q  T  L  I  A  L  Q  I  W  Y  *  T  G  G  I  M  L  I  Q  L  G  A  E  D  A  C  R  N  F  C  G  S  E  K  F  *  *  *  W  E  E  N  F  G  Y  G  H  L  W  H  Y  S  T  L  A  F  I  C  S  I  D  T  L  H  I  H  N  L  F  M  L  L  C  C  Y  M  M  Y  I  P  *  S  L  E  F  G  C  T  G  P  L  L  H  F  S  G  Y  M  L  C  H  V  S  T  D  W  L  S  F  F  F  L  *  I  S  G  *  D  I  *  V  S  F  Y  D  V  K  *  S  G  I  F  E  C  V  L  F  G  L  V  T  I  C  L  C  I  F  S  F  G  R  G  C  M  F  *  Y  M  K  L  K  S  A  E  M  L  C  S  F  L  R  L  M  I  L  L  L  F  Q  L </first_frame>
            <second_frame>  Y  F  S  S  R  I  L  S  A  A  S  Q  I  S  R  L  T  I  S  L  Y  I  A  C  N  *  I  V  S  P  V  I  L  A  F  F  S  A  G  *  V  T  W  I  P  *  A  G  C  W  G  A  G  S  F  C  P  K  Y  C  R  S  G  M  N  S  V  M  A  R  M  I  R  P  W  *  *  G  V  L  I  R  H  L  R  A  E  M  A  *  K  G  V  L  I  R  L  H  K  E  S  W  L  R  L  C  R  G  E  S  *  F  V  I  S  R  N  L  G  S  D  G  *  G  A  R  *  I  *  I  L  G  V  V  G  W  I  S  L  S  *  S  E  A  S  R  A  I  P  I  G  S  C  C  C  M  K  M  Y  R  G  I  G  G  A  *  K  P  *  Y  Q  G  *  C  P  V  L  N  Y  P  V  T  A  L  A  F  A  M  S  G  A  L  A  W  Q  V  P  I  F  N  I  N  W  I  F  R  G  F  E  G  E  I  A  R  I  F  F  F  G  P  G  S  L  P  S  W  C  V  C  V  F  Y  A  F  S  D  S  C  L  H  V  M  L  C  I  V  R  S  A  V  S  Q  R  A  I  L  N  L  P  P  T  Q  M  *   : V  K  A  E  E  D  Y  E  G  E  R  S  R  L  N  I  D  F  I  S  A  N  N  S  K  S  S  A  L  S  V  D  K  I  Y  S  D  S  D  M  H  N  R  L  V  I  M  V  A  W  I  P  N  N  R  P  Q  V  C  F  V  D  A  C  P  *  F  D  L  *  *  S  M  C  R  T  K  I  L  N  *  F  V  V  L  E  N  V  S  N  S  A  L  P  K  F  *  F  R  K  F  L  L  Y  I  H  C  D  T  *  I  P  R  Y  *  R  I  L  T  G  V  L  Q  D  S  I  I  R  N  *  E  L  K  Y  I  S  S  L  P  A  D  V  N  *  V  S  L  R  E  W  L  L  L  F  I  T  F  I  V  G  P  E  G  A  T  E  L  R  F  F  K  Y  L  V  D  K  R  F  A  F  K  Y  Q  I  S  D  L  H  L  N  S  K  P  *  S  L  C  K  Y  G  T  E  L  A  G  *  C  L  F  N  L  E  R  K  M  H  A  E  I  F  V  V  V  R  N  F  D  N  S  G  K  K  I  L  A  M  V  I  F  G  I  T  Q  L  W  R  L  F  A  Q  S  T  L  C  T  Y  T  I  C  S  C  Y  Y  A  V  T  *  C  T  Y  L  E  A  *  N  L  G  A  Q  A  L  C  Y  T  F  P  V  I  C  F  A  M  L  A  L  T  G  F  L  S  F  S  C  K  Y  P  V  E  I  F  R  C  L  S  M  M  *  S  D  P  A  F  S  S  V  S  C  L  D  L  *  Q  F  V  Y  V  S  L  V  L  A  E  D  V  C  F  D  T  *  S  L  K  V  Q  K  C  F  V  V  F  *  G  *  *  F  Y  F  C  F  S   </second_frame>
            <third_frame>   I  F  L  L  G  F  Y  P  P  P  R  K  *  V  G  *  Q  S  L  Y  I  *  P  V  I  R  *  F  L  Q  S  F  *  P  S  F  P  P  D  E  *  R  G  F  L  K  Q  V  A  G  E  Q  G  R  F  A  Q  S  I  V  D  Q  V  *  T  A  *  W  L  E  *  S  A  P  G  S  K  E  S  *  F  V  I  S  G  L  R  W  R  R  K  E  S  *  Y  V  F  T  R  N  L  G  S  D  C  V  E  E  S  L  D  S  S  S  Q  G  I  L  A  Q  M  A  R  V  P  D  E  F  E  F  L  A  L  L  D  G  F  P  C  H  N  Q  K  R  R  E  Q  Y  P  *  E  V  V  V  V  *  R  C  I  E  V  *  V  G  H  K  S  P  N  I  R  G  D  V  P  F  *  I  T  L  L  L  L  W  P  L  P  C  R  V  R  L  H  G  R  S  L  Y  L  I  *  I  G  F  F  G  V  L  R  G  R  *  H  G  F  F  F  L  A  R  D  L  S  P  L  G  V  C  V  C  F  M  P  S  L  I  L  V  C  T  L  C  S  A  S  S  D  Q  Q  S  L  N  E  L  S  L  I  C  R  P  P  K  C  K  :  S  R  Q  K  K  I  M  K  V  N  V  Q  D  *  T  S  I  S  S  V  L  T  T  P  N  L  V  H  Y  L  W  T  K  S  T  R  I  Q  I  C  I  I  G  S  *  L  W  L  L  G  F  L  I  I  D  L  R  Y  A  S  W  M  L  V  L  D  L  I  Y  D  K  A  C  A  E  Q  K  Y  *  T  N  L  W  C  W  R  T  F  P  T  L  H  F  R  N  F  D  L  E  N  F  Y  C  T  Y  T  A  I  L  E  F  L  D  I  D  A  S  *  L  V  S  C  K  I  Q  L  *  E  T  E  N  *  N  I  *  V  L  C  L  L  M  S  I  K  S  L  C  A  S  G  C  C  S  S  L  H  S  *  L  G  Q  K  E  L  L  N  C  G  S  S  N  I  *  L  I  S  D  L  H  L  N  T  K  S  Q  I  C  I  *  I  P  N  L  N  R  F  A  N  M  V  L  N  W  R  D  N  A  Y  S  T  W  S  G  R  C  M  Q  K  F  L  W  *  *  E  I  L  I  I  V  G  R  K  F  W  L  W  S  S  L  A  L  L  N  S  G  V  Y  L  L  N  R  H  S  A  H  T  Q  S  V  H  A  I  M  L  L  H  D  V  H  T  L  K  L  R  I  W  V  H  R  P  F  V  T  L  F  R  L  Y  A  L  P  C  *  H  *  L  A  F  F  L  F  P  V  N  I  R  L  R  Y  L  G  V  F  L  *  C  E  V  I  R  H  F  R  V  C  P  V  W  T  C  N  N  L  F  M  Y  L  *  F  W  Q  R  M  Y  V  L  I  H  E  A  *  K  C  R  N  A  L  *  F  S  E  V  N  D  F  T  S  V  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2163" stop="1891"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPVLNYPVTALAFAMSGALAWQVPIFNINWIFRGFEGEIARIFFFGPGSLPSWCVCVFYAFSDSCLHVMLCIVRSAVSQRAILNLPPTQM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1115" stop="906"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILIIVGRKFWLWSSLALLNSGVYLLNRHSAHTQSVHAIMLLHDVHTLKLRIWVHRPFVTLFRLYALPC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1890" stop="1588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKAEEDYEGERSRLNIDFISANNSKSSALSVDKIYSDSDMHNRLVIMVAWIPNNRPQVCFVDACP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2045" stop="1890"/>
                    <exon start="1784" stop="1743"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGFFFLARDLSPLGVCVCFMPSLILVCTLCSASSDQQSLNELSLICRPPKCKSRQKKIMKVNVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2028" e_stop="1434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="2028" e_stop="1434" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2028" stop="1434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAGGTACAGGCTAATTAGATAGCATTTGAACTTTGCAATTAATTAGACTAAAAAAACCCAGATAGCTAGTTTTTTGCAATTATCATATAGTATTGGTAGTTTGTGCAGTCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCC</gDNA_template>
            <first_frame> G  P  G  S  L  P  S  W  C  V  C  V  F  Y  A  F  S  D  S  C  L  H  V  M  L  C  I  V  R  S  A  V  S  Q  R  A  I  L  N  L  P  P  T  Q  M  *  G  T  G  *  L  D  S  I  *  T  L  Q  L  I  R  L  K  K  P  R  *  L  V  F  C  N  Y  H  I  V  L  V  V  C  A  V  K  A  E  E  D  Y  E  G  E  R  S  R  L  N  I  D  F  I  S  A  N  N  S  K  S  S  A  L  S  V  D  K  I  Y  S  D  S  D  M  H  N  R  L  V  I  M  V  A  W  I  P  N  N  R  P  Q  V  C  F  V  D  A  C  P  *  F  D  L  *  *  S  M  C  R  T  K  I  L  N  *  F  V  V  L  E  N  V  S  N  S  A  L  P  K  F  *  F  R  K  F  L  L  Y  I  H  C  D  T  *  I  P  R  Y  *  R  I  </first_frame>
            <second_frame>  A  R  D  L  S  P  L  G  V  C  V  C  F  M  P  S  L  I  L  V  C  T  L  C  S  A  S  S  D  Q  Q  S  L  N  E  L  S  L  I  C  R  P  P  K  C  K  V  Q  A  N  *  I  A  F  E  L  C  N  *  L  D  *  K  N  P  D  S  *  F  F  A  I  I  I  *  Y  W  *  F  V  Q  S  R  Q  K  K  I  M  K  V  N  V  Q  D  *  T  S  I  S  S  V  L  T  T  P  N  L  V  H  Y  L  W  T  K  S  T  R  I  Q  I  C  I  I  G  S  *  L  W  L  L  G  F  L  I  I  D  L  R  Y  A  S  W  M  L  V  L  D  L  I  Y  D  K  A  C  A  E  Q  K  Y  *  T  N  L  W  C  W  R  T  F  P  T  L  H  F  R  N  F  D  L  E  N  F  Y  C  T  Y  T  A  I  L  E  F  L  D  I  D  A  S </second_frame>
            <third_frame>   P  G  I  S  P  L  L  V  C  V  C  V  L  C  L  L  *  F  L  F  A  R  Y  A  L  H  R  Q  I  S  S  L  S  T  S  Y  P  *  F  A  A  H  P  N  V  R  Y  R  L  I  R  *  H  L  N  F  A  I  N  *  T  K  K  T  Q  I  A  S  F  L  Q  L  S  Y  S  I  G  S  L  C  S  Q  G  R  R  R  L  *  R  *  T  F  K  I  E  H  R  F  H  Q  C  *  Q  L  Q  I  *  C  T  I  C  G  Q  N  L  L  G  F  R  Y  A  *  *  A  R  N  Y  G  C  L  D  S  *  *  *  T  S  G  M  L  R  G  C  L  S  L  I  *  F  M  I  K  H  V  Q  N  K  N  T  E  L  I  C  G  V  G  E  R  F  Q  L  C  T  S  E  I  L  I  *  K  I  F  T  V  H  T  L  R  Y  L  N  S  *  I  L  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1827" stop="1588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFCNYHIVLVVCAVKAEEDYEGERSRLNIDFISANNSKSSALSVDKIYSDSDMHNRLVIMVAWIPNNRPQVCFVDACP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="2670" e_stop="2202"/>
            <exon e_start="1942" e_stop="1895"/>
            <exon e_start="1784" e_stop="722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.451" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.703" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2670" e_stop="2202" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.451">
            <gDNA_intron_boundary i_start="2201" i_stop="1943" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1942" e_stop="1895" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.703">
            <gDNA_intron_boundary i_start="1894" i_stop="1785" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="1784" e_stop="722" e_length="1063"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2670" stop="2202"/>
              <exon start="1942" stop="1895"/>
              <exon start="1784" stop="722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTATATATAGCCTGTAATTAGATAGTTTCTCCAGTCATTCTAGCCTTCTTTTCCGCCGGATGAGTAACGTGGATTCCTTAAGCAGGTTGCTGGGGAGCAGGGTCGTTTTGCCCAAAGTATTGTCGATCAGGTATGAACAGCGTGATGGCTCGAATGATCCGCCCCTGGTAGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTGATACGTCTTCACAAGGAATCTTGGCTCAGATTGTGTAGAGGAGAGTCTTGATTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAG : ATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAAT : TCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAGGTATGCTTCGTGGATGCTTGTCCTTGATTTGATTTATGATAAAGCATGTGCAGAACAAAAATACTGAACTAATTTGTGGTGTTGGAGAACGTTTCCAACTCTGCACTTCCGAAATTTTGATTTAGAAAATTTTTACTGTACATACACTGCGATACTTGAATTCCTAGATATTGACGCATCCTAACTGGTGTCCTGCAAGATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCATAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTCAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCATGCTATTATGCTGTTACATGATGTACATACCTTGAAGCTTAGAATTTGGGTGCACAGGCCCTTTGTTACACTTTTCCGGTTATATGCTTTGCCATGTTAGCACTGACTGGCTTTCTTTCTTTTTCCTGTAAATATCCGGTTGAGATATTTAGGTGTCTTTCTATGATGTGAAGTGATCCGGCATTTTCGAGTGTGTCCTGTTTGGACTTGTAACAATTTGTTTATGTATCTTTAGTTTTGGCAGAGGATGTATGTTTTGATACATGAAGCTTAAAAGTGCAGAA</gDNA_template>
            <first_frame> R  I  L  S  A  A  S  Q  I  S  R  L  T  I  S  L  Y  I  A  C  N  *  I  V  S  P  V  I  L  A  F  F  S  A  G  *  V  T  W  I  P  *  A  G  C  W  G  A  G  S  F  C  P  K  Y  C  R  S  G  M  N  S  V  M  A  R  M  I  R  P  W  *  *  G  V  L  I  R  H  L  R  A  E  M  A  *  K  G  V  L  I  R  L  H  K  E  S  W  L  R  L  C  R  G  E  S  *  F  V  I  S  R  N  L  G  S  D  G  *  G  A  R  *  I  *  I  L  G  V  V  G  W  I  S  L  S  *  S  E  A  S  R  A  I  P  I  G  S  C  C  C  M  K  M  Y  R   : D  Q  Q  S  L  N  E  L  S  L  I  C  R  P  P  K   : F  K  A  E  E  D  Y  E  G  E  R  S  R  L  N  I  D  F  I  S  A  N  N  S  K  S  S  A  L  S  V  D  K  I  Y  S  D  S  D  M  H  N  R  L  V  I  M  V  A  W  I  P  N  N  R  P  Q  V  C  F  V  D  A  C  P  *  F  D  L  *  *  S  M  C  R  T  K  I  L  N  *  F  V  V  L  E  N  V  S  N  S  A  L  P  K  F  *  F  R  K  F  L  L  Y  I  H  C  D  T  *  I  P  R  Y  *  R  I  L  T  G  V  L  Q  D  S  I  I  R  N  *  E  L  K  Y  I  S  S  L  P  A  D  V  N  *  V  S  L  R  E  W  L  L  L  F  I  T  F  I  V  G  P  E  G  A  T  E  L  R  F  F  K  Y  L  V  D  K  R  F  A  F  K  Y  Q  I  S  D  L  H  L  N  S  K  P  *  S  L  C  K  Y  G  T  E  L  A  G  *  C  L  F  N  L  E  R  K  M  H  A  E  I  F  V  V  V  R  N  F  D  N  S  G  K  K  I  L  A  M  V  I  F  G  I  T  Q  L  W  R  L  F  A  Q  S  T  L  C  T  Y  T  I  C  S  C  Y  Y  A  V  T  *  C  T  Y  L  E  A  *  N  L  G  A  Q  A  L  C  Y  T  F  P  V  I  C  F  A  M  L  A  L  T  G  F  L  S  F  S  C  K  Y  P  V  E  I  F  R  C  L  S  M  M  *  S  D  P  A  F  S  S  V  S  C  L  D  L  *  Q  F  V  Y  V  S  L  V  L  A  E  D  V  C  F  D  T  *  S  L  K  V  Q   </first_frame>
            <second_frame>  G  F  Y  P  P  P  R  K  *  V  G  *  Q  S  L  Y  I  *  P  V  I  R  *  F  L  Q  S  F  *  P  S  F  P  P  D  E  *  R  G  F  L  K  Q  V  A  G  E  Q  G  R  F  A  Q  S  I  V  D  Q  V  *  T  A  *  W  L  E  *  S  A  P  G  S  K  E  S  *  F  V  I  S  G  L  R  W  R  R  K  E  S  *  Y  V  F  T  R  N  L  G  S  D  C  V  E  E  S  L  D  S  S  S  Q  G  I  L  A  Q  M  A  R  V  P  D  E  F  E  F  L  A  L  L  D  G  F  P  C  H  N  Q  K  R  R  E  Q  Y  P  *  E  V  V  V  V  *  R  C  I  E  :  I  S  S  L  S  T  S  Y  P  *  F  A  A  H  P  N  :  S  R  Q  K  K  I  M  K  V  N  V  Q  D  *  T  S  I  S  S  V  L  T  T  P  N  L  V  H  Y  L  W  T  K  S  T  R  I  Q  I  C  I  I  G  S  *  L  W  L  L  G  F  L  I  I  D  L  R  Y  A  S  W  M  L  V  L  D  L  I  Y  D  K  A  C  A  E  Q  K  Y  *  T  N  L  W  C  W  R  T  F  P  T  L  H  F  R  N  F  D  L  E  N  F  Y  C  T  Y  T  A  I  L  E  F  L  D  I  D  A  S  *  L  V  S  C  K  I  Q  L  *  E  T  E  N  *  N  I  *  V  L  C  L  L  M  S  I  K  S  L  C  A  S  G  C  C  S  S  L  H  S  *  L  G  Q  K  E  L  L  N  C  G  S  S  N  I  *  L  I  S  D  L  H  L  N  T  K  S  Q  I  C  I  *  I  P  N  L  N  R  F  A  N  M  V  L  N  W  R  D  N  A  Y  S  T  W  S  G  R  C  M  Q  K  F  L  W  *  *  E  I  L  I  I  V  G  R  K  F  W  L  W  S  S  L  A  L  L  N  S  G  V  Y  L  L  N  R  H  S  A  H  T  Q  S  V  H  A  I  M  L  L  H  D  V  H  T  L  K  L  R  I  W  V  H  R  P  F  V  T  L  F  R  L  Y  A  L  P  C  *  H  *  L  A  F  F  L  F  P  V  N  I  R  L  R  Y  L  G  V  F  L  *  C  E  V  I  R  H  F  R  V  C  P  V  W  T  C  N  N  L  F  M  Y  L  *  F  W  Q  R  M  Y  V  L  I  H  E  A  *  K  C  R  </second_frame>
            <third_frame>   D  S  I  R  R  L  A  N  K  S  V  D  N  L  S  I  Y  S  L  *  L  D  S  F  S  S  H  S  S  L  L  F  R  R  M  S  N  V  D  S  L  S  R  L  L  G  S  R  V  V  L  P  K  V  L  S  I  R  Y  E  Q  R  D  G  S  N  D  P  P  L  V  V  R  S  L  D  S  S  S  Q  G  *  D  G  V  E  R  S  L  D  T  S  S  Q  G  I  L  A  Q  I  V  *  R  R  V  L  I  R  H  L  K  E  S  W  L  R  W  L  G  C  Q  M  N  L  N  S  W  R  C  W  M  D  F  P  V  I  I  R  S  V  E  S  N  T  H  R  K  L  L  L  Y  E  D  V  *  R :   S  A  V  S  Q  R  A  I  L  N  L  P  P  T  Q  I :   Q  G  R  R  R  L  *  R  *  T  F  K  I  E  H  R  F  H  Q  C  *  Q  L  Q  I  *  C  T  I  C  G  Q  N  L  L  G  F  R  Y  A  *  *  A  R  N  Y  G  C  L  D  S  *  *  *  T  S  G  M  L  R  G  C  L  S  L  I  *  F  M  I  K  H  V  Q  N  K  N  T  E  L  I  C  G  V  G  E  R  F  Q  L  C  T  S  E  I  L  I  *  K  I  F  T  V  H  T  L  R  Y  L  N  S  *  I  L  T  H  P  N  W  C  P  A  R  F  N  Y  K  K  L  R  T  E  I  Y  K  F  S  A  C  *  C  Q  L  S  L  F  A  R  V  V  V  A  L  H  Y  I  H  S  W  A  R  R  S  Y  *  I  A  V  L  Q  I  F  S  *  *  A  I  C  I  *  I  P  N  L  R  F  A  F  K  F  Q  T  L  I  A  L  Q  I  W  Y  *  T  G  G  I  M  L  I  Q  L  G  A  E  D  A  C  R  N  F  C  G  S  E  K  F  *  *  *  W  E  E  N  F  G  Y  G  H  L  W  H  Y  S  T  L  A  F  I  C  S  I  D  T  L  H  I  H  N  L  F  M  L  L  C  C  Y  M  M  Y  I  P  *  S  L  E  F  G  C  T  G  P  L  L  H  F  S  G  Y  M  L  C  H  V  S  T  D  W  L  S  F  F  F  L  *  I  S  G  *  D  I  *  V  S  F  Y  D  V  K  *  S  G  I  F  E  C  V  L  F  G  L  V  T  I  C  L  C  I  F  S  F  G  R  G  C  M  F  *  Y  M  K  L  K  S  A  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2259" stop="2202"/>
                    <exon start="1942" stop="1895"/>
                    <exon start="1784" stop="1588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEASRAIPIGSCCCMKMYRDQQSLNELSLICRPPKFKAEEDYEGERSRLNIDFISANNSKSSALSVDKIYSDSDMHNRLVIMVAWIPNNRPQVCFVDACP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1115" stop="906"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILIIVGRKFWLWSSLALLNSGVYLLNRHSAHTQSVHAIMLLHDVHTLKLRIWVHRPFVTLFRLYALPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="2673" e_stop="1890"/>
            <exon e_start="1784" e_stop="1615"/>
            <exon e_start="1415" e_stop="996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.703" e_score="0.954"/>
          <exon-intron don_prob="0.968" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="2673" e_stop="1890" e_length="784"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.703">
            <gDNA_intron_boundary i_start="1889" i_stop="1785" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1784" e_stop="1615" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1614" i_stop="1416" i_length="199"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="1415" e_stop="996" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2673" stop="1890"/>
              <exon start="1784" stop="1615"/>
              <exon start="1415" stop="996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAGGATTCTATCCGCCGCCTCGCAAATAAGTCGGTTGACAATCTCTCTATATATAGCCTGTAATTAGATAGTTTCTCCAGTCATTCTAGCCTTCTTTTCCGCCGGATGAGTAACGTGGATTCCTTAAGCAGGTTGCTGGGGAGCAGGGTCGTTTTGCCCAAAGTATTGTCGATCAGGTATGAACAGCGTGATGGCTCGAATGATCCGCCCCTGGTAGTAAGGAGTCTTGATTCGTCATCTCAGGGCTGAGATGGCGTAGAAAGGAGTCTTGATACGTCTTCACAAGGAATCTTGGCTCAGATTGTGTAGAGGAGAGTCTTGATTCGTCATCTCAAGGAATCTTGGCTCAGATGGCTAGGGTGCCAGATGAATTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCATAATCAGAAGCGTCGAGAGCAATACCCATAGGAAGTTGTTGTTGTATGAAGATGTATAGAGGTATAGGTGGGGCATAAAAGCCCTAATATCAGGGGTGATGTCCCGTTTTAAATTACCCTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTATATTTAATATAAATTGGATTTTTCGGGGTTTTGAGGGGGAGATAGCACGGATTTTTTTTTTTGGCCCGGGATCTCTCCCCTCTTGGTGTGTGTGTGTGTTTTATGCCTTCTCTGATTCTTGTTTGCACGTTATGCTCTGCATCGTCAGATCAGCAGTCTCTCAACGAGCTATCCTTAATTTGCCGCCCACCCAAATGTAAG : TCAAGGCAGAAGAAGATTATGAAGGTGAACGTTCAAGATTGAACATCGATTTCATCAGTGCTAACAACTCCAAATCTAGTGCACTATCTGTGGACAAAATCTACTCGGATTCAGATATGCATAATAGGCTCGTAATTATGGTTGCTTGGATTCCTAATAATAGACCTCAG : ATTCAATTATAAGAAACTGAGAACTGAAATATATAAGTTCTCTGCCTGCTGATGTCAATTAAGTCTCTTTGCGCGAGTGGTTGTTGCTCTTCATTACATTCATAGTTGGGCCAGAAGGAGCTACTGAATTGCGGTTCTTCAAATATTTAGTTGATAAGCGATTTGCATTTAAATACCAAATCTCAGATTTGCATTTAAATTCCAAACCTTAATCGCTTTGCAAATATGGTACTGAACTGGCGGGATAATGCTTATTCAACTTGGAGCGGAAGATGCATGCAGAAATTTTTGTGGTAGTGAGAAATTTTGATAATAGTGGGAAGAAAATTTTGGCTATGGTCATCTTTGGCATTACTCAACTCTGGCGTTTATTTGCTCAATCGACACTCTGCACATACACAATCTGTTCATGCTATTATG</gDNA_template>
            <first_frame> S  R  I  L  S  A  A  S  Q  I  S  R  L  T  I  S  L  Y  I  A  C  N  *  I  V  S  P  V  I  L  A  F  F  S  A  G  *  V  T  W  I  P  *  A  G  C  W  G  A  G  S  F  C  P  K  Y  C  R  S  G  M  N  S  V  M  A  R  M  I  R  P  W  *  *  G  V  L  I  R  H  L  R  A  E  M  A  *  K  G  V  L  I  R  L  H  K  E  S  W  L  R  L  C  R  G  E  S  *  F  V  I  S  R  N  L  G  S  D  G  *  G  A  R  *  I  *  I  L  G  V  V  G  W  I  S  L  S  *  S  E  A  S  R  A  I  P  I  G  S  C  C  C  M  K  M  Y  R  G  I  G  G  A  *  K  P  *  Y  Q  G  *  C  P  V  L  N  Y  P  V  T  A  L  A  F  A  M  S  G  A  L  A  W  Q  V  P  I  F  N  I  N  W  I  F  R  G  F  E  G  E  I  A  R  I  F  F  F  G  P  G  S  L  P  S  W  C  V  C  V  F  Y  A  F  S  D  S  C  L  H  V  M  L  C  I  V  R  S  A  V  S  Q  R  A  I  L  N  L  P  P  T  Q  M  *   : V  K  A  E  E  D  Y  E  G  E  R  S  R  L  N  I  D  F  I  S  A  N  N  S  K  S  S  A  L  S  V  D  K  I  Y  S  D  S  D  M  H  N  R  L  V  I  M  V  A  W  I  P  N  N  R  P  Q  :  I  Q  L  *  E  T  E  N  *  N  I  *  V  L  C  L  L  M  S  I  K  S  L  C  A  S  G  C  C  S  S  L  H  S  *  L  G  Q  K  E  L  L  N  C  G  S  S  N  I  *  L  I  S  D  L  H  L  N  T  K  S  Q  I  C  I  *  I  P  N  L  N  R  F  A  N  M  V  L  N  W  R  D  N  A  Y  S  T  W  S  G  R  C  M  Q  K  F  L  W  *  *  E  I  L  I  I  V  G  R  K  F  W  L  W  S  S  L  A  L  L  N  S  G  V  Y  L  L  N  R  H  S  A  H  T  Q  S  V  H  A  I  M </first_frame>
            <second_frame>  L  G  F  Y  P  P  P  R  K  *  V  G  *  Q  S  L  Y  I  *  P  V  I  R  *  F  L  Q  S  F  *  P  S  F  P  P  D  E  *  R  G  F  L  K  Q  V  A  G  E  Q  G  R  F  A  Q  S  I  V  D  Q  V  *  T  A  *  W  L  E  *  S  A  P  G  S  K  E  S  *  F  V  I  S  G  L  R  W  R  R  K  E  S  *  Y  V  F  T  R  N  L  G  S  D  C  V  E  E  S  L  D  S  S  S  Q  G  I  L  A  Q  M  A  R  V  P  D  E  F  E  F  L  A  L  L  D  G  F  P  C  H  N  Q  K  R  R  E  Q  Y  P  *  E  V  V  V  V  *  R  C  I  E  V  *  V  G  H  K  S  P  N  I  R  G  D  V  P  F  *  I  T  L  L  L  L  W  P  L  P  C  R  V  R  L  H  G  R  S  L  Y  L  I  *  I  G  F  F  G  V  L  R  G  R  *  H  G  F  F  F  L  A  R  D  L  S  P  L  G  V  C  V  C  F  M  P  S  L  I  L  V  C  T  L  C  S  A  S  S  D  Q  Q  S  L  N  E  L  S  L  I  C  R  P  P  K  C  K  :  S  R  Q  K  K  I  M  K  V  N  V  Q  D  *  T  S  I  S  S  V  L  T  T  P  N  L  V  H  Y  L  W  T  K  S  T  R  I  Q  I  C  I  I  G  S  *  L  W  L  L  G  F  L  I  I  D  L  R :   F  N  Y  K  K  L  R  T  E  I  Y  K  F  S  A  C  *  C  Q  L  S  L  F  A  R  V  V  V  A  L  H  Y  I  H  S  W  A  R  R  S  Y  *  I  A  V  L  Q  I  F  S  *  *  A  I  C  I  *  I  P  N  L  R  F  A  F  K  F  Q  T  L  I  A  L  Q  I  W  Y  *  T  G  G  I  M  L  I  Q  L  G  A  E  D  A  C  R  N  F  C  G  S  E  K  F  *  *  *  W  E  E  N  F  G  Y  G  H  L  W  H  Y  S  T  L  A  F  I  C  S  I  D  T  L  H  I  H  N  L  F  M  L  L   </second_frame>
            <third_frame>   *  D  S  I  R  R  L  A  N  K  S  V  D  N  L  S  I  Y  S  L  *  L  D  S  F  S  S  H  S  S  L  L  F  R  R  M  S  N  V  D  S  L  S  R  L  L  G  S  R  V  V  L  P  K  V  L  S  I  R  Y  E  Q  R  D  G  S  N  D  P  P  L  V  V  R  S  L  D  S  S  S  Q  G  *  D  G  V  E  R  S  L  D  T  S  S  Q  G  I  L  A  Q  I  V  *  R  R  V  L  I  R  H  L  K  E  S  W  L  R  W  L  G  C  Q  M  N  L  N  S  W  R  C  W  M  D  F  P  V  I  I  R  S  V  E  S  N  T  H  R  K  L  L  L  Y  E  D  V  *  R  Y  R  W  G  I  K  A  L  I  S  G  V  M  S  R  F  K  L  P  C  Y  C  S  G  L  C  H  V  G  C  A  C  M  A  G  P  Y  I  *  Y  K  L  D  F  S  G  F  *  G  G  D  S  T  D  F  F  F  W  P  G  I  S  P  L  L  V  C  V  C  V  L  C  L  L  *  F  L  F  A  R  Y  A  L  H  R  Q  I  S  S  L  S  T  S  Y  P  *  F  A  A  H  P  N  V  S :   Q  G  R  R  R  L  *  R  *  T  F  K  I  E  H  R  F  H  Q  C  *  Q  L  Q  I  *  C  T  I  C  G  Q  N  L  L  G  F  R  Y  A  *  *  A  R  N  Y  G  C  L  D  S  *  *  *  T  S   : D  S  I  I  R  N  *  E  L  K  Y  I  S  S  L  P  A  D  V  N  *  V  S  L  R  E  W  L  L  L  F  I  T  F  I  V  G  P  E  G  A  T  E  L  R  F  F  K  Y  L  V  D  K  R  F  A  F  K  Y  Q  I  S  D  L  H  L  N  S  K  P  *  S  L  C  K  Y  G  T  E  L  A  G  *  C  L  F  N  L  E  R  K  M  H  A  E  I  F  V  V  V  R  N  F  D  N  S  G  K  K  I  L  A  M  V  I  F  G  I  T  Q  L  W  R  L  F  A  Q  S  T  L  C  T  Y  T  I  C  S  C  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2163" stop="1891"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPVLNYPVTALAFAMSGALAWQVPIFNINWIFRGFEGEIARIFFFGPGSLPSWCVCVFYAFSDSCLHVMLCIVRSAVSQRAILNLPPTQM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2045" stop="1890"/>
                    <exon start="1784" stop="1743"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGFFFLARDLSPLGVCVCFMPSLILVCTLCSASSDQQSLNELSLICRPPKCKSRQKKIMKVNVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7647" PGL_stop="4433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7553" e_stop="6627"/>
            <exon e_start="5262" e_stop="5174"/>
            <exon e_start="5060" e_stop="4433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.811" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7553" e_stop="6627" e_length="927"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.868">
            <gDNA_intron_boundary i_start="6626" i_stop="5263" i_length="1364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5262" e_stop="5174" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.811">
            <gDNA_intron_boundary i_start="5173" i_stop="5061" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5060" e_stop="4433" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7553" stop="6627"/>
              <exon start="5262" stop="5174"/>
              <exon start="5060" stop="4433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7553" stop="6848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGCAGGGTTTGCCCAAAGTAATGTTGATCAGATATACACAGCATGGTGGTTGGGATGAGCCGCCCCTGGTAGAAAGGAGTCTTGATTCGTCGTCTCAGCGAAGCTTGGATCTGATGGCGTAGAAAGGAGTCTTGATTCGTCATCTCAGGGAATCTTGGCTCAGATGGCCAGGGTGTAGATAAACTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCGCGTGGAGAGCAATATCCATTTGAGTATGTTGTTGTATGAAGATATATAGGTGTATAATCGGGATATAGAAGGCCTACTATCAGGGGGTCATGTCCTGTTTATATTACTTTGTTACTGCTCTGGCCTTTGCCATGTCGGGTGCGCTTGCATGGCAGGTCCCTAACTTTAATATAAAATGGATTTTTTTGGGGTTTCGAGGGGGGAGATGGCACGGGTTTTTTTTTCTTTTTGGCCCGGGTTCTCTCCCCTCTTGATGTGTGTGTGTTTGTGCCTTTTCTGATTCTTGTTTGCACGTTATGCTCTCATCGTCAGATCAGCAACGAACTATCCTTAATTGGCCGCCCACCGCCCACCGCCCAAATCAGGTATAGGCTAATTAGTTTGAATTTGAACTTGGGCAATTAATTAGACAAAAAACGTAGATAACTACAGGTTTTTTATATGATAGCCAACGGAAGCCACTTAATTTGTATTATCATATATATTGTTGGTAGGTTCTGCTGTTAACGCCGTAGAAGATGATGAATATGACCTTTAAGTTTTGAGTTTTGAACATCTCCAAATCTAACAAAACCAAGCATCTGTTTCTGAAAAATGTGCTTGGGCAAAATCCTGGAGGACTTTAGATGCGCTATTTGGATTCGGGTGCATATCAAGCTCGTAAATATGGTTTGCTCGGATTCCTAATAATTGACGACCTTAG : CCAATATGACATGTTGGATCAGATAATCAATAGTAAGATCTTTGGAACTATCAAATCCTAACTTGTGGAGTCTCTAATTGGAAGATGAG : GGATAAGGGAATGAGCAGACACTTCGAATTAGGCCTGCCATGTAATGTAGGTGCCGAGATTCAACTGATATTTTTGTACCAACATCCAAGGAACCTTATGGAACTGCTTACAGGAACCTTATGGAATTGCTTGCTGAGATGATGACTTGTGAAGAGGATATCGGCTCTGTATAATGCAGTATTTTGTACTTTCCACCTCTTCTGCAAAGATGGATGGGATAACGGTCAATCTGGCAAAGTAAGAATAGATTATTGATCTAATTAGTCAAGGATTAGTGGCCATATTTCAGCGGTATTACCACCAGCTGTAAATGTCATCCAACGACGACTACTAGATTGTTGAAGATTGTAGAGATCCATTCAGGGAGTGGATGAGGCGTTTATTCTGGACCTTGTTGTGTTCAGAAATTTTGAAATACTAGAGGTGATCAGTACTAGCTTAAGGGTAGTCAAAGGAGTACAGATAACCGTATATCATTTCTATTAAGGCGTTACATGCCAATTGTAAATTTAAAATCTTTATATGTGAACGTGAAGCTTTGTGTATTTTCCGTGGAGTATAGGCTTGAACAAACTTGTTTGTTCCTCTAGTGTCCGTGTATTAAAACTTGATTTGTAGTGCTTGGCA</gDNA_template>
            <first_frame> R  S  R  V  C  P  K  *  C  *  S  D  I  H  S  M  V  V  G  M  S  R  P  W  *  K  G  V  L  I  R  R  L  S  E  A  W  I  *  W  R  R  K  E  S  *  F  V  I  S  G  N  L  G  S  D  G  Q  G  V  D  K  L  E  F  L  A  L  L  D  G  F  P  C  R  V  E  S  N  I  H  L  S  M  L  L  Y  E  D  I  *  V  Y  N  R  D  I  E  G  L  L  S  G  G  H  V  L  F  I  L  L  C  Y  C  S  G  L  C  H  V  G  C  A  C  M  A  G  P  *  L  *  Y  K  M  D  F  F  G  V  S  R  G  E  M  A  R  V  F  F  S  F  W  P  G  F  S  P  L  L  M  C  V  C  L  C  L  F  *  F  L  F  A  R  Y  A  L  I  V  R  S  A  T  N  Y  P  *  L  A  A  H  R  P  P  P  K  S  G  I  G  *  L  V  *  I  *  T  W  A  I  N  *  T  K  N  V  D  N  Y  R  F  F  I  *  *  P  T  E  A  T  *  F  V  L  S  Y  I  L  L  V  G  S  A  V  N  A  V  E  D  D  E  Y  D  L  *  V  L  S  F  E  H  L  Q  I  *  Q  N  Q  A  S  V  S  E  K  C  A  W  A  K  S  W  R  T  L  D  A  L  F  G  F  G  C  I  S  S  S  *  I  W  F  A  R  I  P  N  N  *  R  P  *  :  P  I  *  H  V  G  S  D  N  Q  *  *  D  L  W  N  Y  Q  I  L  T  C  G  V  S  N  W  K  M  R :   D  K  G  M  S  R  H  F  E  L  G  L  P  C  N  V  G  A  E  I  Q  L  I  F  L  Y  Q  H  P  R  N  L  M  E  L  L  T  G  T  L  W  N  C  L  L  R  *  *  L  V  K  R  I  S  A  L  Y  N  A  V  F  C  T  F  H  L  F  C  K  D  G  W  D  N  G  Q  S  G  K  V  R  I  D  Y  *  S  N  *  S  R  I  S  G  H  I  S  A  V  L  P  P  A  V  N  V  I  Q  R  R  L  L  D  C  *  R  L  *  R  S  I  Q  G  V  D  E  A  F  I  L  D  L  V  V  F  R  N  F  E  I  L  E  V  I  S  T  S  L  R  V  V  K  G  V  Q  I  T  V  Y  H  F  Y  *  G  V  T  C  Q  L  *  I  *  N  L  Y  M  *  T  *  S  F  V  Y  F  P  W  S  I  G  L  N  K  L  V  C  S  S  S  V  R  V  L  K  L  D  L  *  C  L  A </first_frame>
            <second_frame>  G  A  G  F  A  Q  S  N  V  D  Q  I  Y  T  A  W  W  L  G  *  A  A  P  G  R  K  E  S  *  F  V  V  S  A  K  L  G  S  D  G  V  E  R  S  L  D  S  S  S  Q  G  I  L  A  Q  M  A  R  V  *  I  N  L  N  S  W  R  C  W  M  D  F  P  V  A  W  R  A  I  S  I  *  V  C  C  C  M  K  I  Y  R  C  I  I  G  I  *  K  A  Y  Y  Q  G  V  M  S  C  L  Y  Y  F  V  T  A  L  A  F  A  M  S  G  A  L  A  W  Q  V  P  N  F  N  I  K  W  I  F  L  G  F  R  G  G  R  W  H  G  F  F  F  L  F  G  P  G  S  L  P  S  *  C  V  C  V  C  A  F  S  D  S  C  L  H  V  M  L  S  S  S  D  Q  Q  R  T  I  L  N  W  P  P  T  A  H  R  P  N  Q  V  *  A  N  *  F  E  F  E  L  G  Q  L  I  R  Q  K  T  *  I  T  T  G  F  L  Y  D  S  Q  R  K  P  L  N  L  Y  Y  H  I  Y  C  W  *  V  L  L  L  T  P  *  K  M  M  N  M  T  F  K  F  *  V  L  N  I  S  K  S  N  K  T  K  H  L  F  L  K  N  V  L  G  Q  N  P  G  G  L  *  M  R  Y  L  D  S  G  A  Y  Q  A  R  K  Y  G  L  L  G  F  L  I  I  D  D  L  S :   Q  Y  D  M  L  D  Q  I  I  N  S  K  I  F  G  T  I  K  S  *  L  V  E  S  L  I  G  R  *   : G  I  R  E  *  A  D  T  S  N  *  A  C  H  V  M  *  V  P  R  F  N  *  Y  F  C  T  N  I  Q  G  T  L  W  N  C  L  Q  E  P  Y  G  I  A  C  *  D  D  D  L  *  R  G  Y  R  L  C  I  M  Q  Y  F  V  L  S  T  S  S  A  K  M  D  G  I  T  V  N  L  A  K  *  E  *  I  I  D  L  I  S  Q  G  L  V  A  I  F  Q  R  Y  Y  H  Q  L  *  M  S  S  N  D  D  Y  *  I  V  E  D  C  R  D  P  F  R  E  W  M  R  R  L  F  W  T  L  L  C  S  E  I  L  K  Y  *  R  *  S  V  L  A  *  G  *  S  K  E  Y  R  *  P  Y  I  I  S  I  K  A  L  H  A  N  C  K  F  K  I  F  I  C  E  R  E  A  L  C  I  F  R  G  V  *  A  *  T  N  L  F  V  P  L  V  S  V  Y  *  N  L  I  C  S  A  W   </second_frame>
            <third_frame>   E  Q  G  L  P  K  V  M  L  I  R  Y  T  Q  H  G  G  W  D  E  P  P  L  V  E  R  S  L  D  S  S  S  Q  R  S  L  D  L  M  A  *  K  G  V  L  I  R  H  L  R  E  S  W  L  R  W  P  G  C  R  *  T  *  I  L  G  V  V  G  W  I  S  L  S  R  G  E  Q  Y  P  F  E  Y  V  V  V  *  R  Y  I  G  V  *  S  G  Y  R  R  P  T  I  R  G  S  C  P  V  Y  I  T  L  L  L  L  W  P  L  P  C  R  V  R  L  H  G  R  S  L  T  L  I  *  N  G  F  F  W  G  F  E  G  G  D  G  T  G  F  F  F  F  L  A  R  V  L  S  P  L  D  V  C  V  F  V  P  F  L  I  L  V  C  T  L  C  S  H  R  Q  I  S  N  E  L  S  L  I  G  R  P  P  P  T  A  Q  I  R  Y  R  L  I  S  L  N  L  N  L  G  N  *  L  D  K  K  R  R  *  L  Q  V  F  Y  M  I  A  N  G  S  H  L  I  C  I  I  I  Y  I  V  G  R  F  C  C  *  R  R  R  R  *  *  I  *  P  L  S  F  E  F  *  T  S  P  N  L  T  K  P  S  I  C  F  *  K  M  C  L  G  K  I  L  E  D  F  R  C  A  I  W  I  R  V  H  I  K  L  V  N  M  V  C  S  D  S  *  *  L  T  T  L   : A  N  M  T  C  W  I  R  *  S  I  V  R  S  L  E  L  S  N  P  N  L  W  S  L  *  L  E  D  E  :  G  *  G  N  E  Q  T  L  R  I  R  P  A  M  *  C  R  C  R  D  S  T  D  I  F  V  P  T  S  K  E  P  Y  G  T  A  Y  R  N  L  M  E  L  L  A  E  M  M  T  C  E  E  D  I  G  S  V  *  C  S  I  L  Y  F  P  P  L  L  Q  R  W  M  G  *  R  S  I  W  Q  S  K  N  R  L  L  I  *  L  V  K  D  *  W  P  Y  F  S  G  I  T  T  S  C  K  C  H  P  T  T  T  T  R  L  L  K  I  V  E  I  H  S  G  S  G  *  G  V  Y  S  G  P  C  C  V  Q  K  F  *  N  T  R  G  D  Q  Y  *  L  K  G  S  Q  R  S  T  D  N  R  I  S  F  L  L  R  R  Y  M  P  I  V  N  L  K  S  L  Y  V  N  V  K  L  C  V  F  S  V  E  Y  R  L  E  Q  T  C  L  F  L  *  C  P  C  I  K  T  *  F  V  V  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7155" stop="6925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGFFWGFEGGDGTGFFFFLARVLSPLDVCVFVPFLILVCTLCSHRQISNELSLIGRPPPTAQIRYRLISLNLNLGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5226" stop="5174"/>
                    <exon start="5060" stop="4919"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLWNYQILTCGVSNWKMRDKGMSRHFELGLPCNVGAEIQLIFLYQHPRNLMELLTGTLWNCLLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6107" e_stop="5713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6107" e_stop="5713" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6107" stop="5713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTCTGGCGTTCATTGTGGTGGATGTAATCGGCGGAGGAGAACTCACCCAAAGATCGTGGGATTATGCAATTGAGAAATCGAGCTAGGTTGCGGTTGAGATACTCTGTTCTATTGTTGGCTGCAGACGTACATCAGATATGTATCACGCCCTGGGCTGTGGTTTGGTATAGACACTCTTTTCTGTAGGCCTGTTTTATGATATAGGCAAATCCAGTCAAGTTTTATTTATTGTTCGGTCGTGGTGAAAGGTTTGAAAAAACCGATGTTATGCAGACTTGATAGGGAGAACTACTGGTATGAAAGGGTAATGTCAGGTTTTAGCTTTGCTCAATATGTGCTCGAAACACTTTACGCATGCATAGTTTGTTCATGCTATTGAATTTTTAAAATGT</gDNA_template>
            <first_frame> Q  F  W  R  S  L  W  W  M  *  S  A  E  E  N  S  P  K  D  R  G  I  M  Q  L  R  N  R  A  R  L  R  L  R  Y  S  V  L  L  L  A  A  D  V  H  Q  I  C  I  T  P  W  A  V  V  W  Y  R  H  S  F  L  *  A  C  F  M  I  *  A  N  P  V  K  F  Y  L  L  F  G  R  G  E  R  F  E  K  T  D  V  M  Q  T  *  *  G  E  L  L  V  *  K  G  N  V  R  F  *  L  C  S  I  C  A  R  N  T  L  R  M  H  S  L  F  M  L  L  N  F  *  N   </first_frame>
            <second_frame>  N  S  G  V  H  C  G  G  C  N  R  R  R  R  T  H  P  K  I  V  G  L  C  N  *  E  I  E  L  G  C  G  *  D  T  L  F  Y  C  W  L  Q  T  Y  I  R  Y  V  S  R  P  G  L  W  F  G  I  D  T  L  F  C  R  P  V  L  *  Y  R  Q  I  Q  S  S  F  I  Y  C  S  V  V  V  K  G  L  K  K  P  M  L  C  R  L  D  R  E  N  Y  W  Y  E  R  V  M  S  G  F  S  F  A  Q  Y  V  L  E  T  L  Y  A  C  I  V  C  S  C  Y  *  I  F  K  M  </second_frame>
            <third_frame>   I  L  A  F  I  V  V  D  V  I  G  G  G  E  L  T  Q  R  S  W  D  Y  A  I  E  K  S  S  *  V  A  V  E  I  L  C  S  I  V  G  C  R  R  T  S  D  M  Y  H  A  L  G  C  G  L  V  *  T  L  F  S  V  G  L  F  Y  D  I  G  K  S  S  Q  V  L  F  I  V  R  S  W  *  K  V  *  K  N  R  C  Y  A  D  L  I  G  R  T  T  G  M  K  G  *  C  Q  V  L  A  L  L  N  M  C  S  K  H  F  T  H  A  *  F  V  H  A  I  E  F  L  K  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0128E12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7647" e_stop="7307"/>
            <exon e_start="7017" e_stop="6965"/>
            <exon e_start="6835" e_stop="6509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.006" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7647" e_stop="7307" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.006" acc_prob="0.797">
            <gDNA_intron_boundary i_start="7306" i_stop="7018" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7017" e_stop="6965" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.930">
            <gDNA_intron_boundary i_start="6964" i_stop="6836" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6835" e_stop="6509" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7647" stop="7307"/>
              <exon start="7017" stop="6965"/>
              <exon start="6835" stop="6509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATCCGCCGCCTCGAAAATAATTCGGTTGACAATCTCTCTGTATATAGCCTTTAATGAGATGGTTTTTCCTCCAGGTAAGTATCGTGTTGCTGAGGAGCAGGGTTTGCCCAAAGTAATGTTGATCAGATATACACAGCATGGTGGTTGGGATGAGCCGCCCCTGGTAGAAAGGAGTCTTGATTCGTCGTCTCAGCGAAGCTTGGATCTGATGGCGTAGAAAGGAGTCTTGATTCGTCATCTCAGGGAATCTTGGCTCAGATGGCCAGGGTGTAGATAAACTTGAATTCTTGGCGTTGTTGGATGGATTTCCCTGTCGCGTGGAGAGCAATATCCATTTGA : ATCAGCAACGAACTATCCTTAATTGGCCGCCCACCGCCCACCGCCCAAATCAG : GTTCTGCTGTTAACGCCGTAGAAGATGATGAATATGACCTTTAAGTTTTGAGTTTTGAACATCTCCAAATCTAACAAAACCAAGCATCTGTTTCTGAAAAATGTGCTTGGGCAAAATCCTGGAGGACTTTAGATGCGCTATTTGGATTCGGGTGCATATCAAGCTCGTAAATATGGTTTGCTCGGATTCCTAATAATTGACGACCTTAGGTACGCATTGTAGGCTTCGCTCGTCTTTTCAGTTGATTTATAATTAAGCATGTGCAGAACAGAAATACTGAAACAATTTTGTGGAATGTTTTTAATTCTATGCTCTCAGAATTTTGAT</gDNA_template>
            <first_frame> L  S  A  A  S  K  I  I  R  L  T  I  S  L  Y  I  A  F  N  E  M  V  F  P  P  G  K  Y  R  V  A  E  E  Q  G  L  P  K  V  M  L  I  R  Y  T  Q  H  G  G  W  D  E  P  P  L  V  E  R  S  L  D  S  S  S  Q  R  S  L  D  L  M  A  *  K  G  V  L  I  R  H  L  R  E  S  W  L  R  W  P  G  C  R  *  T  *  I  L  G  V  V  G  W  I  S  L  S  R  G  E  Q  Y  P  F  E :   S  A  T  N  Y  P  *  L  A  A  H  R  P  P  P  K  S   : G  S  A  V  N  A  V  E  D  D  E  Y  D  L  *  V  L  S  F  E  H  L  Q  I  *  Q  N  Q  A  S  V  S  E  K  C  A  W  A  K  S  W  R  T  L  D  A  L  F  G  F  G  C  I  S  S  S  *  I  W  F  A  R  I  P  N  N  *  R  P  *  V  R  I  V  G  F  A  R  L  F  S  *  F  I  I  K  H  V  Q  N  R  N  T  E  T  I  L  W  N  V  F  N  S  M  L  S  E  F  *  </first_frame>
            <second_frame>  Y  P  P  P  R  K  *  F  G  *  Q  S  L  C  I  *  P  L  M  R  W  F  F  L  Q  V  S  I  V  L  L  R  S  R  V  C  P  K  *  C  *  S  D  I  H  S  M  V  V  G  M  S  R  P  W  *  K  G  V  L  I  R  R  L  S  E  A  W  I  *  W  R  R  K  E  S  *  F  V  I  S  G  N  L  G  S  D  G  Q  G  V  D  K  L  E  F  L  A  L  L  D  G  F  P  C  R  V  E  S  N  I  H  L   : N  Q  Q  R  T  I  L  N  W  P  P  T  A  H  R  P  N  Q  :  V  L  L  L  T  P  *  K  M  M  N  M  T  F  K  F  *  V  L  N  I  S  K  S  N  K  T  K  H  L  F  L  K  N  V  L  G  Q  N  P  G  G  L  *  M  R  Y  L  D  S  G  A  Y  Q  A  R  K  Y  G  L  L  G  F  L  I  I  D  D  L  R  Y  A  L  *  A  S  L  V  F  S  V  D  L  *  L  S  M  C  R  T  E  I  L  K  Q  F  C  G  M  F  L  I  L  C  S  Q  N  F  D </second_frame>
            <third_frame>   I  R  R  L  E  N  N  S  V  D  N  L  S  V  Y  S  L  *  *  D  G  F  S  S  R  *  V  S  C  C  *  G  A  G  F  A  Q  S  N  V  D  Q  I  Y  T  A  W  W  L  G  *  A  A  P  G  R  K  E  S  *  F  V  V  S  A  K  L  G  S  D  G  V  E  R  S  L  D  S  S  S  Q  G  I  L  A  Q  M  A  R  V  *  I  N  L  N  S  W  R  C  W  M  D  F  P  V  A  W  R  A  I  S  I  *  :  I  S  N  E  L  S  L  I  G  R  P  P  P  T  A  Q  I  R :   F  C  C  *  R  R  R  R  *  *  I  *  P  L  S  F  E  F  *  T  S  P  N  L  T  K  P  S  I  C  F  *  K  M  C  L  G  K  I  L  E  D  F  R  C  A  I  W  I  R  V  H  I  K  L  V  N  M  V  C  S  D  S  *  *  L  T  T  L  G  T  H  C  R  L  R  S  S  F  Q  L  I  Y  N  *  A  C  A  E  Q  K  Y  *  N  N  F  V  E  C  F  *  F  Y  A  L  R  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7647" stop="7429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSAASKIIRLTISLYIAFNEMVFPPGKYRVAEEQGLPKVMLIRYTQHGGWDEPPLVERSLDSSSQRSLDLMA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="4693" PGL_stop="5477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4693" e_stop="5477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="4693" e_stop="5477" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4693" stop="5477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCCTGAATGGATCTCTACAATCTTCAACAATCTAGTAGTCGTCGTTGGATGACATTTACAGCTGGTGGTAATACCGCTGAAATATGGCCACTAATCCTTGACTAATTAGATCAATAATCTATTCTTACTTTGCCAGATTGACCGTTATCCCATCCATCTTTGCAGAAGAGGTGGAAAGTACAAAATACTGCATTATACAGAGCCGATATCCTCTTCACAAGTCATCATCTCAGCAAGCAATTCCATAAGGTTCCTGTAAGCAGTTCCATAAGGTTCCTTGGATGTTGGTACAAAAATATCAGTTGAATCTCGGCACCTACATTACATGGCAGGCCTAATTCGAAGTGTCTGCTCATTCCCTTATCCCTTCATGTAACTGATTGTCATTATTTACCACATAAATACTAATACTATATAGAAATAGGTATACACAGACCATCTCAAGAAGTCACTTTGAAATTTCTGATAAATATTCTCACCTCATCTTCCAATTAGAGACTCCACAAGTTAGGATTTGATAGTTCCAAAGATCTTACTATTGATTATCTGATCCAACATGTCATATTGGCTGAAAAGTATATACAGAAGATTCACAAACTTGATCAAGCTGGTAAAAAATTACATCAACCGTAACAGAAGCAAAAGCATATACCTCAATTGGCTGAAAAATATATACAGAATATTCACAAACTTGATCAAACTGGAAGTATAGAATTACATCAACTTTAACAAAAGCAAACGCATTTACATCAGAAGACCACAAAAGGACTTCTACATTCAAAA</gDNA_template>
            <first_frame> L  P  E  W  I  S  T  I  F  N  N  L  V  V  V  V  G  *  H  L  Q  L  V  V  I  P  L  K  Y  G  H  *  S  L  T  N  *  I  N  N  L  F  L  L  C  Q  I  D  R  Y  P  I  H  L  C  R  R  G  G  K  Y  K  I  L  H  Y  T  E  P  I  S  S  S  Q  V  I  I  S  A  S  N  S  I  R  F  L  *  A  V  P  *  G  S  L  D  V  G  T  K  I  S  V  E  S  R  H  L  H  Y  M  A  G  L  I  R  S  V  C  S  F  P  Y  P  F  M  *  L  I  V  I  I  Y  H  I  N  T  N  T  I  *  K  *  V  Y  T  D  H  L  K  K  S  L  *  N  F  *  *  I  F  S  P  H  L  P  I  R  D  S  T  S  *  D  L  I  V  P  K  I  L  L  L  I  I  *  S  N  M  S  Y  W  L  K  S  I  Y  R  R  F  T  N  L  I  K  L  V  K  N  Y  I  N  R  N  R  S  K  S  I  Y  L  N  W  L  K  N  I  Y  R  I  F  T  N  L  I  K  L  E  V  *  N  Y  I  N  F  N  K  S  K  R  I  Y  I  R  R  P  Q  K  D  F  Y  I  Q   </first_frame>
            <second_frame>  S  L  N  G  S  L  Q  S  S  T  I  *  *  S  S  L  D  D  I  Y  S  W  W  *  Y  R  *  N  M  A  T  N  P  *  L  I  R  S  I  I  Y  S  Y  F  A  R  L  T  V  I  P  S  I  F  A  E  E  V  E  S  T  K  Y  C  I  I  Q  S  R  Y  P  L  H  K  S  S  S  Q  Q  A  I  P  *  G  S  C  K  Q  F  H  K  V  P  W  M  L  V  Q  K  Y  Q  L  N  L  G  T  Y  I  T  W  Q  A  *  F  E  V  S  A  H  S  L  I  P  S  C  N  *  L  S  L  F  T  T  *  I  L  I  L  Y  R  N  R  Y  T  Q  T  I  S  R  S  H  F  E  I  S  D  K  Y  S  H  L  I  F  Q  L  E  T  P  Q  V  R  I  *  *  F  Q  R  S  Y  Y  *  L  S  D  P  T  C  H  I  G  *  K  V  Y  T  E  D  S  Q  T  *  S  S  W  *  K  I  T  S  T  V  T  E  A  K  A  Y  T  S  I  G  *  K  I  Y  T  E  Y  S  Q  T  *  S  N  W  K  Y  R  I  T  S  T  L  T  K  A  N  A  F  T  S  E  D  H  K  R  T  S  T  F  K  </second_frame>
            <third_frame>   P  *  M  D  L  Y  N  L  Q  Q  S  S  S  R  R  W  M  T  F  T  A  G  G  N  T  A  E  I  W  P  L  I  L  D  *  L  D  Q  *  S  I  L  T  L  P  D  *  P  L  S  H  P  S  L  Q  K  R  W  K  V  Q  N  T  A  L  Y  R  A  D  I  L  F  T  S  H  H  L  S  K  Q  F  H  K  V  P  V  S  S  S  I  R  F  L  G  C  W  Y  K  N  I  S  *  I  S  A  P  T  L  H  G  R  P  N  S  K  C  L  L  I  P  L  S  L  H  V  T  D  C  H  Y  L  P  H  K  Y  *  Y  Y  I  E  I  G  I  H  R  P  S  Q  E  V  T  L  K  F  L  I  N  I  L  T  S  S  S  N  *  R  L  H  K  L  G  F  D  S  S  K  D  L  T  I  D  Y  L  I  Q  H  V  I  L  A  E  K  Y  I  Q  K  I  H  K  L  D  Q  A  G  K  K  L  H  Q  P  *  Q  K  Q  K  H  I  P  Q  L  A  E  K  Y  I  Q  N  I  H  K  L  D  Q  T  G  S  I  E  L  H  Q  L  *  Q  K  Q  T  H  L  H  Q  K  T  T  K  G  L  L  H  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0128E12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18300" PGL_stop="16152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18300" e_stop="16152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="18300" e_stop="16152" e_length="2149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18300" stop="16152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGTCCTCCTTGTAAGGCTGAGCTTTTCTCAATTAAAGCTAAGCACTTCTAACCCCCTTTTCAACTCTCTCCCTCTTCTTGGGGCTACTCTGTTAGTCCACTCAAAACTTGCTCACCAATTTCTTCTTATAACTGTTGTTGTTGAGGTAATGTGTGAGTAGTGTAGCTTAGTAAGATTTGGTGTGGAGAATGGCCTATATGTGTACGGACAGTGGGAATCTAATGGCAATTGCTCAGCAAGTCATAAAGCAAAAGCAGCAGCAGGAGCAGCTCCAACAGCAAGAGCAACAGCAGCAGCAGCAACAACAATTCTTGGGTGTTAATCCTTTGTGTCTCAGCCCATGGACTTCCAATCACCAGACCTTAACTAATAGCCCCACTTTAGGATATGGACTTACCGGGTCGGGTTTTGCAGACCCATTTCAGGTCGCCGGAGGAACAGATAGCGCCGAGCCGGGATTTCAGTTCCCTAACTTGGAACATCATTCGACCGGGTTTAGGTTTGCTGATTTCGGCGGTGGACCGGGTGGTGAGTTTGACTCAGATGAGTGGATGGAGAGCTTGATAGGCGGCGGAGATTCTACCGGAAGCTCTAATCTTCAATCTGGTTGCGAAGCCTGGCAGACGAGTTCCGAATTCACTACCCTCTACGGAGATCCGTTCCCGAGTTGTCCGAATCGACTCAGTATCGGTTCTGCTCCTCCGCCTCCACCTTCTTCCGATCTCAATGGGGTCATTTTTTCGGAAACCCAGAAAAATCTAAGCCCACTACAACCACAGACATCTCCATGGGTCGCACCATCTTCATCTCCTCCTCCAATTGTTCAACCCGCGAGCAAAGAATCCAAGGTGGTATCAGTTGATGTGCAGCCATGTAGTTCCCCTGAAAGTTTTTCGTCAAAACCATTGTTGAAATCCTTGGTGGAATGTGCAAGACTCGCTGAATCAGAGCCTGAAAATGTAGTAAAATCATTGATTCGACTAAGGGAATCAGTTTCCCAACAAGGAGATCCAATGGAGCGAGTTGGGTTCTATTTCTTAGAAGCTCTTTACAATAGGCTTTCGTCGTGTCAAGCAGAGAGAACTCCGTCAATCTTTGGTACTGCGCCGGAGGAGCTCACTTTGTCATACAAAGCCTTTAATGATGCATGTCCCTACTCAAAGTTTGCTCACTTAACGGCTAATCAGGCGATTCTTGAAGCAACTGAAAAAGCAACGAGGATTCACATTGTAGATTTTGGAATTGTTCATGGTATCCAATGGGCAGCTTTTTTACAAGCTTTAGCAACTAGATCAGCTGGTAAACCAGTCAGTGTTAGAATCTCTGGCATTCCATCAGTGGTATTGGGTAACTCTCCGTCAGCTTCACTTTTAGCTACAGGGAATCGTCTTCGTGACTTCGCGAAGCTTCTGGATCTTAACTTCGAATTCGAACCAATATTGACTCCAGTTCAGGAACTTAACGGGTCTAGTTTTCGAGTTGATCCAGATGAAATCTTAGCTGTGAACTTCATGTTGCAGCTGTACAATTTACTGGACGAAACAAATGTTGGTGTAAAAACTGCACTGAGTTTAGCCAAATCATTGAATCCAAGCATTGTGACATTGGGTGAGTATGAGGTGAATTTGAATGATGTTGGATTCCTGCAGCGATTTAAGAACGCACTGAAATACTACTCAACTATTTTCGAGTCATTGGATCCGAGCTTGACCCGAGACTCCGCTGAGAGAGTACAAGTGGAAAGACTGATACTTGGCCGGAGAATTGCCGGAGCGGTGGGCCTAGACGATGGCGGAACCAGAAGAGAATGTATGGAAGATAAAGAACATTGGAAAGAATTAATGGAAGGGGCTGGTTTTAAACCAGTAACACTTAGCCATTATGCAATGAGTCAAGCAAAAATTCTTCTTTGGAACTATAATTATAGTTCATCATTTGGATTAATTGATTCTGCCCCTGGGTTTCTCTCCTTGGCTTGGAAAGATAATCCCCTTTTGACTGTTTCTTCATGGCACTAATTGTGTTCTACATCAGTTCTGTTAGGTACTTTCTTCTAAGTGCTTAAATTTAAATTTCATTGCTCTCTGTAGATTAAAAAGTTAGTATAGAAAGATGATATTTTTGAGCAAGTTTAACTTTGAATTTC</gDNA_template>
            <first_frame> L  C  P  P  C  K  A  E  L  F  S  I  K  A  K  H  F  *  P  P  F  Q  L  S  P  S  S  W  G  Y  S  V  S  P  L  K  T  C  S  P  I  S  S  Y  N  C  C  C  *  G  N  V  *  V  V  *  L  S  K  I  W  C  G  E  W  P  I  C  V  R  T  V  G  I  *  W  Q  L  L  S  K  S  *  S  K  S  S  S  R  S  S  S  N  S  K  S  N  S  S  S  S  N  N  N  S  W  V  L  I  L  C  V  S  A  H  G  L  P  I  T  R  P  *  L  I  A  P  L  *  D  M  D  L  P  G  R  V  L  Q  T  H  F  R  S  P  E  E  Q  I  A  P  S  R  D  F  S  S  L  T  W  N  I  I  R  P  G  L  G  L  L  I  S  A  V  D  R  V  V  S  L  T  Q  M  S  G  W  R  A  *  *  A  A  E  I  L  P  E  A  L  I  F  N  L  V  A  K  P  G  R  R  V  P  N  S  L  P  S  T  E  I  R  S  R  V  V  R  I  D  S  V  S  V  L  L  L  R  L  H  L  L  P  I  S  M  G  S  F  F  R  K  P  R  K  I  *  A  H  Y  N  H  R  H  L  H  G  S  H  H  L  H  L  L  L  Q  L  F  N  P  R  A  K  N  P  R  W  Y  Q  L  M  C  S  H  V  V  P  L  K  V  F  R  Q  N  H  C  *  N  P  W  W  N  V  Q  D  S  L  N  Q  S  L  K  M  *  *  N  H  *  F  D  *  G  N  Q  F  P  N  K  E  I  Q  W  S  E  L  G  S  I  S  *  K  L  F  T  I  G  F  R  R  V  K  Q  R  E  L  R  Q  S  L  V  L  R  R  R  S  S  L  C  H  T  K  P  L  M  M  H  V  P  T  Q  S  L  L  T  *  R  L  I  R  R  F  L  K  Q  L  K  K  Q  R  G  F  T  L  *  I  L  E  L  F  M  V  S  N  G  Q  L  F  Y  K  L  *  Q  L  D  Q  L  V  N  Q  S  V  L  E  S  L  A  F  H  Q  W  Y  W  V  T  L  R  Q  L  H  F  *  L  Q  G  I  V  F  V  T  S  R  S  F  W  I  L  T  S  N  S  N  Q  Y  *  L  Q  F  R  N  L  T  G  L  V  F  E  L  I  Q  M  K  S  *  L  *  T  S  C  C  S  C  T  I  Y  W  T  K  Q  M  L  V  *  K  L  H  *  V  *  P  N  H  *  I  Q  A  L  *  H  W  V  S  M  R  *  I  *  M  M  L  D  S  C  S  D  L  R  T  H  *  N  T  T  Q  L  F  S  S  H  W  I  R  A  *  P  E  T  P  L  R  E  Y  K  W  K  D  *  Y  L  A  G  E  L  P  E  R  W  A  *  T  M  A  E  P  E  E  N  V  W  K  I  K  N  I  G  K  N  *  W  K  G  L  V  L  N  Q  *  H  L  A  I  M  Q  *  V  K  Q  K  F  F  F  G  T  I  I  I  V  H  H  L  D  *  L  I  L  P  L  G  F  S  P  W  L  G  K  I  I  P  F  *  L  F  L  H  G  T  N  C  V  L  H  Q  F  C  *  V  L  S  S  K  C  L  N  L  N  F  I  A  L  C  R  L  K  S  *  Y  R  K  M  I  F  L  S  K  F  N  F  E  F  </first_frame>
            <second_frame>  F  V  L  L  V  R  L  S  F  S  Q  L  K  L  S  T  S  N  P  L  F  N  S  L  P  L  L  G  A  T  L  L  V  H  S  K  L  A  H  Q  F  L  L  I  T  V  V  V  E  V  M  C  E  *  C  S  L  V  R  F  G  V  E  N  G  L  Y  V  Y  G  Q  W  E  S  N  G  N  C  S  A  S  H  K  A  K  A  A  A  G  A  A  P  T  A  R  A  T  A  A  A  A  T  T  I  L  G  C  *  S  F  V  S  Q  P  M  D  F  Q  S  P  D  L  N  *  *  P  H  F  R  I  W  T  Y  R  V  G  F  C  R  P  I  S  G  R  R  R  N  R  *  R  R  A  G  I  S  V  P  *  L  G  T  S  F  D  R  V  *  V  C  *  F  R  R  W  T  G  W  *  V  *  L  R  *  V  D  G  E  L  D  R  R  R  R  F  Y  R  K  L  *  S  S  I  W  L  R  S  L  A  D  E  F  R  I  H  Y  P  L  R  R  S  V  P  E  L  S  E  S  T  Q  Y  R  F  C  S  S  A  S  T  F  F  R  S  Q  W  G  H  F  F  G  N  P  E  K  S  K  P  T  T  T  T  D  I  S  M  G  R  T  I  F  I  S  S  S  N  C  S  T  R  E  Q  R  I  Q  G  G  I  S  *  C  A  A  M  *  F  P  *  K  F  F  V  K  T  I  V  E  I  L  G  G  M  C  K  T  R  *  I  R  A  *  K  C  S  K  I  I  D  S  T  K  G  I  S  F  P  T  R  R  S  N  G  A  S  W  V  L  F  L  R  S  S  L  Q  *  A  F  V  V  S  S  R  E  N  S  V  N  L  W  Y  C  A  G  G  A  H  F  V  I  Q  S  L  *  *  C  M  S  L  L  K  V  C  S  L  N  G  *  S  G  D  S  *  S  N  *  K  S  N  E  D  S  H  C  R  F  W  N  C  S  W  Y  P  M  G  S  F  F  T  S  F  S  N  *  I  S  W  *  T  S  Q  C  *  N  L  W  H  S  I  S  G  I  G  *  L  S  V  S  F  T  F  S  Y  R  E  S  S  S  *  L  R  E  A  S  G  S  *  L  R  I  R  T  N  I  D  S  S  S  G  T  *  R  V  *  F  S  S  *  S  R  *  N  L  S  C  E  L  H  V  A  A  V  Q  F  T  G  R  N  K  C  W  C  K  N  C  T  E  F  S  Q  I  I  E  S  K  H  C  D  I  G  *  V  *  G  E  F  E  *  C  W  I  P  A  A  I  *  E  R  T  E  I  L  L  N  Y  F  R  V  I  G  S  E  L  D  P  R  L  R  *  E  S  T  S  G  K  T  D  T  W  P  E  N  C  R  S  G  G  P  R  R  W  R  N  Q  K  R  M  Y  G  R  *  R  T  L  E  R  I  N  G  R  G  W  F  *  T  S  N  T  *  P  L  C  N  E  S  S  K  N  S  S  L  E  L  *  L  *  F  I  I  W  I  N  *  F  C  P  W  V  S  L  L  G  L  E  R  *  S  P  F  D  C  F  F  M  A  L  I  V  F  Y  I  S  S  V  R  Y  F  L  L  S  A  *  I  *  I  S  L  L  S  V  D  *  K  V  S  I  E  R  *  Y  F  *  A  S  L  T  L  N  F </second_frame>
            <third_frame>   L  S  S  L  *  G  *  A  F  L  N  *  S  *  A  L  L  T  P  F  S  T  L  S  L  F  L  G  L  L  C  *  S  T  Q  N  L  L  T  N  F  F  L  *  L  L  L  L  R  *  C  V  S  S  V  A  *  *  D  L  V  W  R  M  A  Y  M  C  T  D  S  G  N  L  M  A  I  A  Q  Q  V  I  K  Q  K  Q  Q  Q  E  Q  L  Q  Q  Q  E  Q  Q  Q  Q  Q  Q  Q  Q  F  L  G  V  N  P  L  C  L  S  P  W  T  S  N  H  Q  T  L  T  N  S  P  T  L  G  Y  G  L  T  G  S  G  F  A  D  P  F  Q  V  A  G  G  T  D  S  A  E  P  G  F  Q  F  P  N  L  E  H  H  S  T  G  F  R  F  A  D  F  G  G  G  P  G  G  E  F  D  S  D  E  W  M  E  S  L  I  G  G  G  D  S  T  G  S  S  N  L  Q  S  G  C  E  A  W  Q  T  S  S  E  F  T  T  L  Y  G  D  P  F  P  S  C  P  N  R  L  S  I  G  S  A  P  P  P  P  P  S  S  D  L  N  G  V  I  F  S  E  T  Q  K  N  L  S  P  L  Q  P  Q  T  S  P  W  V  A  P  S  S  S  P  P  P  I  V  Q  P  A  S  K  E  S  K  V  V  S  V  D  V  Q  P  C  S  S  P  E  S  F  S  S  K  P  L  L  K  S  L  V  E  C  A  R  L  A  E  S  E  P  E  N  V  V  K  S  L  I  R  L  R  E  S  V  S  Q  Q  G  D  P  M  E  R  V  G  F  Y  F  L  E  A  L  Y  N  R  L  S  S  C  Q  A  E  R  T  P  S  I  F  G  T  A  P  E  E  L  T  L  S  Y  K  A  F  N  D  A  C  P  Y  S  K  F  A  H  L  T  A  N  Q  A  I  L  E  A  T  E  K  A  T  R  I  H  I  V  D  F  G  I  V  H  G  I  Q  W  A  A  F  L  Q  A  L  A  T  R  S  A  G  K  P  V  S  V  R  I  S  G  I  P  S  V  V  L  G  N  S  P  S  A  S  L  L  A  T  G  N  R  L  R  D  F  A  K  L  L  D  L  N  F  E  F  E  P  I  L  T  P  V  Q  E  L  N  G  S  S  F  R  V  D  P  D  E  I  L  A  V  N  F  M  L  Q  L  Y  N  L  L  D  E  T  N  V  G  V  K  T  A  L  S  L  A  K  S  L  N  P  S  I  V  T  L  G  E  Y  E  V  N  L  N  D  V  G  F  L  Q  R  F  K  N  A  L  K  Y  Y  S  T  I  F  E  S  L  D  P  S  L  T  R  D  S  A  E  R  V  Q  V  E  R  L  I  L  G  R  R  I  A  G  A  V  G  L  D  D  G  G  T  R  R  E  C  M  E  D  K  E  H  W  K  E  L  M  E  G  A  G  F  K  P  V  T  L  S  H  Y  A  M  S  Q  A  K  I  L  L  W  N  Y  N  Y  S  S  S  F  G  L  I  D  S  A  P  G  F  L  S  L  A  W  K  D  N  P  L  L  T  V  S  S  W  H  *  L  C  S  T  S  V  L  L  G  T  F  F  *  V  L  K  F  K  F  H  C  S  L  *  I  K  K  L  V  *  K  D  D  I  F  E  Q  V  *  L  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18124" stop="16280"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1842</number_coding_nucleotides>
                  <number_encoded_amino_acids>614</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLVWRMAYMCTDSGNLMAIAQQVIKQKQQQEQLQQQEQQQQQQQQFLGVNPLCLSPWTSNHQTLTNSPTLGYGLTGSGFADPFQVAGGTDSAEPGFQFPNLEHHSTGFRFADFGGGPGGEFDSDEWMESLIGGGDSTGSSNLQSGCEAWQTSSEFTTLYGDPFPSCPNRLSIGSAPPPPPSSDLNGVIFSETQKNLSPLQPQTSPWVAPSSSPPPIVQPASKESKVVSVDVQPCSSPESFSSKPLLKSLVECARLAESEPENVVKSLIRLRESVSQQGDPMERVGFYFLEALYNRLSSCQAERTPSIFGTAPEELTLSYKAFNDACPYSKFAHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPVSVRISGIPSVVLGNSPSASLLATGNRLRDFAKLLDLNFEFEPILTPVQELNGSSFRVDPDEILAVNFMLQLYNLLDETNVGVKTALSLAKSLNPSIVTLGEYEVNLNDVGFLQRFKNALKYYSTIFESLDPSLTRDSAERVQVERLILGRRIAGAVGLDDGGTRRECMEDKEHWKELMEGAGFKPVTLSHYAMSQAKILLWNYNYSSSFGLIDSAPGFLSLAWKDNPLLTVSSWH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36501" PGL_stop="29403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36501" e_stop="35975"/>
            <exon e_start="35535" e_stop="35368"/>
            <exon e_start="34829" e_stop="34742"/>
            <exon e_start="34385" e_stop="34239"/>
            <exon e_start="34050" e_stop="33910"/>
            <exon e_start="33614" e_stop="33529"/>
            <exon e_start="33439" e_stop="33347"/>
            <exon e_start="33251" e_stop="33188"/>
            <exon e_start="32984" e_stop="32841"/>
            <exon e_start="32082" e_stop="31895"/>
            <exon e_start="31780" e_stop="31606"/>
            <exon e_start="31532" e_stop="31362"/>
            <exon e_start="31203" e_stop="31134"/>
            <exon e_start="31039" e_stop="30919"/>
            <exon e_start="30830" e_stop="30793"/>
            <exon e_start="29775" e_stop="29403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.500" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="36501" e_stop="35975" e_length="527"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="35974" i_stop="35536" i_length="439"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35535" e_stop="35368" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35367" i_stop="34830" i_length="538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34829" e_stop="34742" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.944">
            <gDNA_intron_boundary i_start="34741" i_stop="34386" i_length="356"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34385" e_stop="34239" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.971">
            <gDNA_intron_boundary i_start="34238" i_stop="34051" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34050" e_stop="33910" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.500" acc_prob="0.944">
            <gDNA_intron_boundary i_start="33909" i_stop="33615" i_length="295"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33614" e_stop="33529" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.944" acc_prob="0.943">
            <gDNA_intron_boundary i_start="33528" i_stop="33440" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33439" e_stop="33347" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="33346" i_stop="33252" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33251" e_stop="33188" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33187" i_stop="32985" i_length="203"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32984" e_stop="32841" e_length="144"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.895">
            <gDNA_intron_boundary i_start="32840" i_stop="32083" i_length="758"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="32082" e_stop="31895" e_length="188"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31894" i_stop="31781" i_length="114"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="31780" e_stop="31606" e_length="175"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="31605" i_stop="31533" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="31532" e_stop="31362" e_length="171"/>
          </exon>
          <intron i_serial="12" don_prob="0.987" acc_prob="0.929">
            <gDNA_intron_boundary i_start="31361" i_stop="31204" i_length="158"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="31203" e_stop="31134" e_length="70"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="31133" i_stop="31040" i_length="94"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="31039" e_stop="30919" e_length="121"/>
          </exon>
          <intron i_serial="14" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30918" i_stop="30831" i_length="88"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="30830" e_stop="30793" e_length="38"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.935">
            <gDNA_intron_boundary i_start="30792" i_stop="29776" i_length="1017"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="29775" e_stop="29403" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36501" stop="35975"/>
              <exon start="35535" stop="35368"/>
              <exon start="34829" stop="34742"/>
              <exon start="34385" stop="34239"/>
              <exon start="34050" stop="33910"/>
              <exon start="33614" stop="33529"/>
              <exon start="33439" stop="33347"/>
              <exon start="33251" stop="33188"/>
              <exon start="32984" stop="32841"/>
              <exon start="32082" stop="31895"/>
              <exon start="31780" stop="31606"/>
              <exon start="31532" stop="31362"/>
              <exon start="31203" stop="31134"/>
              <exon start="31039" stop="30919"/>
              <exon start="30830" stop="30793"/>
              <exon start="29775" stop="29403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCATTTAGAATTTTAAAAGAATGATATTTCATATTTTCTTGCGAAAAAACTTTTTTTTAGGATTTCATTATATTCAGGTTTGGAATATCTCAAAATTAATATTTTTAAAATAAAATTTACACGTTAAACGTAATACTATTATTTTAGGTCTACATAAACATAAATTAATTTTGCGATTAAATTACGGGTTTGTCGTACAGAGCGTGACGGTGGCCGTTTAGTAATATTGGTTAACATTAGGGGTAGTTCCAGTAAAGTGGGAACATAATCGTCAGTCGCCTTATACTTTGTCCCGGTACCCAAAAAAAGAGCATCCCACTTTCACATCCATTTGATTGCTCTACATTGTATTCTGTACTTCTTCATCTATAACTCCATTCAATCTCCGAACAGAATCCGCACCGGCATATTGGTTTCCGATACGTTTCAGAATGTGGCGCTGTGTGTCGCGTGGTCTTCGCGCTTCCTCCAACAGATCTATCTCCGGCGGCGGCCATTTTCGCCGACTCTTCTCCTCACAAACT : AATGTGGGAGGCTCGTCCTACACGGTAGTCGATCACACATATGATGCGGTGGTGGTTGGTGCAGGCGGTGCTGGGCTTCGTGCAGCAATAGGGTTGTCTGAGCATGGATTCAATACTGCTTGCATAACCAAGCTCTTTCCTACTCGATCTCACACTGTTGCAGCTCAG : GGTGGTATAAATGCTGCATTAGGCAACATGACAGAAGACGATTGGAGGTGGCACATGTATGATACAGTCAAAGGAAGTGATTGGTTAG : GTGATCAGGATGCTATCCAATACATGTGTAGAGAAGCTCCAAAAGCAGTTATAGAGCTTGAGAATTATGGTTTGCCTTTCTCTCGAACAGAAGATGGTAAAATATATCAACGTGCATTTGGTGGTCAAAGCCTGGACTTTGGGAAAG : GAGGACAAGCATATCGTTGTGCATGCGCTGCAGATCGGACTGGGCATGCTCTATTGCATACTCTTTATGGCCAGGCCATGAAGCATAATACACAGTTTTTTGTGGAATATTTCGCTTTGGATTTACTAATGAACAGTGATG : GGAGCTGCCAAGGTGTAATAGCACTAAATATGGAGGATGGTACCTTGCATCGATTCCGTGCTGCCAATACAATTTTGGCCACCGGG : GGTTATGGCCGAGCTTACTTCTCGGCAACATCTGCTCATACTTGCACTGGAGATGGTAATGCTATGGTTGCGCGTGCTGGGCTTCCTCTTCAG : GATCTTGAGTTTGTGCAATTTCATCCAACTGGTATATATGGGGCTGGTTGCCTCATTACTGAAG : GATCTCGCGGTGAAGGTGGTATCCTGAGGAATAGTGAGGGTGAGCGATTTATGGAAAGGTATGCCCCAACTGCCAAGGATCTTGCCTCAAGAGATGTTGTTTCCAGATCTATGACTATGGAAATTCGAGAAGGGCGTGGTGTAG : GACCTTTGAAGGACCATATCTATCTTCACCTCAATCACTTACCTCCAGAGGTTCTTAAGGAGAGACTTCCGGGTATCTCTGAAACAGCTGCCATTTTCGCTGGTGTTGATGTAACTAAGGAACCAATTCCTGTTTTACCTACCGTGCATTATAATATGGGAGGAATCCCAACTAATTACCATGGACAG : GTGGTCACTAAAAACGGGGATGATCCAGATGCTGTGATCCCTGGACTGATGGCTGCTGGTGAAGCAGCATGCGCATCTGTTCATGGTGCCAATCGTCTTGGTGCAAATTCTCTTCTAGATATTGTTGTTTTTGGACGGGCATGTGCTAATAGGGTTGCAGAGATCCAAAAACCAG : GCGCGGAACAAAAGCCACTTGAAAAAGATGCTGGGGAGAGGACCATTGCATGGTTGGACAAGATTAGGAACTCAAATGGTTCATTGCCCACCTCAAAGATAAGGCTGGACATGCAAAGAGTTATGCAAAACAATGCTGCTGTCTTCCGCACACAAGAGACATTAGAGGAAG : GTTGCCAGCTCATTGACAAAACATGGGAGAGTTTCCATGATGTTCAGTTGAAGGACAGAGGTTTAATATG : GAACACAGATCTTATAGAGACTATTGAGTTGGAAAATCTTTTAATTAATGCATGCATCACCATGCACTCAGCCGAGGCAAGAAAAGAAAGCAGAGGAGCTCATGCTCGTGAAGATTTTACG : AAAAGAGATGATGAGAAGTGGATGAAACACACCATAGG : ATATTGGGAGGACGAGAAAGTTCGGCTAGAATACAGACCAGTGCATATGAACACTCTAGATGACGAAGTCGAGTCGTTCCCACCAAAGGCTCGTGTCTACTGATATACTCATTTATAGGGGGATTTGGATGGCGTAGAAGTTGATAATAAGGAAGGTTGCAATAAATCGCGAAAATTGTGAAATTTTGGTAATAACTGTTTGATTTATTTGTGCGATGAATTGTAAGCAGCCTGTGAAGTGTTCATAAATATTAGAAGCAGAACACCGTTTGTCTTGTAATCAGGAAGCAAGGCTTCCTGACTTTTCGATCTTGTAGAAGATGATGGAATCACTTGTTTATGCTCTTATATACTCTACTTCTTGCATTTTGAC</gDNA_template>
            <first_frame> V  S  F  R  I  L  K  E  *  Y  F  I  F  S  C  E  K  T  F  F  *  D  F  I  I  F  R  F  G  I  S  Q  N  *  Y  F  *  N  K  I  Y  T  L  N  V  I  L  L  F  *  V  Y  I  N  I  N  *  F  C  D  *  I  T  G  L  S  Y  R  A  *  R  W  P  F  S  N  I  G  *  H  *  G  *  F  Q  *  S  G  N  I  I  V  S  R  L  I  L  C  P  G  T  Q  K  K  S  I  P  L  S  H  P  F  D  C  S  T  L  Y  S  V  L  L  H  L  *  L  H  S  I  S  E  Q  N  P  H  R  H  I  G  F  R  Y  V  S  E  C  G  A  V  C  R  V  V  F  A  L  P  P  T  D  L  S  P  A  A  A  I  F  A  D  S  S  P  H  K  L :   M  W  E  A  R  P  T  R  *  S  I  T  H  M  M  R  W  W  L  V  Q  A  V  L  G  F  V  Q  Q  *  G  C  L  S  M  D  S  I  L  L  A  *  P  S  S  F  L  L  D  L  T  L  L  Q  L  R :   V  V  *  M  L  H  *  A  T  *  Q  K  T  I  G  G  G  T  C  M  I  Q  S  K  E  V  I  G  *  :  V  I  R  M  L  S  N  T  C  V  E  K  L  Q  K  Q  L  *  S  L  R  I  M  V  C  L  S  L  E  Q  K  M  V  K  Y  I  N  V  H  L  V  V  K  A  W  T  L  G  K  :  E  D  K  H  I  V  V  H  A  L  Q  I  G  L  G  M  L  Y  C  I  L  F  M  A  R  P  *  S  I  I  H  S  F  L  W  N  I  S  L  W  I  Y  *  *  T  V  M  :  G  A  A  K  V  *  *  H  *  I  W  R  M  V  P  C  I  D  S  V  L  P  I  Q  F  W  P  P  G :   V  M  A  E  L  T  S  R  Q  H  L  L  I  L  A  L  E  M  V  M  L  W  L  R  V  L  G  F  L  F  R :   I  L  S  L  C  N  F  I  Q  L  V  Y  M  G  L  V  A  S  L  L  K  :  D  L  A  V  K  V  V  S  *  G  I  V  R  V  S  D  L  W  K  G  M  P  Q  L  P  R  I  L  P  Q  E  M  L  F  P  D  L  *  L  W  K  F  E  K  G  V  V  *  :  D  L  *  R  T  I  S  I  F  T  S  I  T  Y  L  Q  R  F  L  R  R  D  F  R  V  S  L  K  Q  L  P  F  S  L  V  L  M  *  L  R  N  Q  F  L  F  Y  L  P  C  I  I  I  W  E  E  S  Q  L  I  T  M  D  R :   W  S  L  K  T  G  M  I  Q  M  L  *  S  L  D  *  W  L  L  V  K  Q  H  A  H  L  F  M  V  P  I  V  L  V  Q  I  L  F  *  I  L  L  F  L  D  G  H  V  L  I  G  L  Q  R  S  K  N  Q  :  A  R  N  K  S  H  L  K  K  M  L  G  R  G  P  L  H  G  W  T  R  L  G  T  Q  M  V  H  C  P  P  Q  R  *  G  W  T  C  K  E  L  C  K  T  M  L  L  S  S  A  H  K  R  H  *  R  K  :  V  A  S  S  L  T  K  H  G  R  V  S  M  M  F  S  *  R  T  E  V  *  Y   : G  T  Q  I  L  *  R  L  L  S  W  K  I  F  *  L  M  H  A  S  P  C  T  Q  P  R  Q  E  K  K  A  E  E  L  M  L  V  K  I  L  R :   K  E  M  M  R  S  G  *  N  T  P  *   : D  I  G  R  T  R  K  F  G  *  N  T  D  Q  C  I  *  T  L  *  M  T  K  S  S  R  S  H  Q  R  L  V  S  T  D  I  L  I  Y  R  G  I  W  M  A  *  K  L  I  I  R  K  V  A  I  N  R  E  N  C  E  I  L  V  I  T  V  *  F  I  C  A  M  N  C  K  Q  P  V  K  C  S  *  I  L  E  A  E  H  R  L  S  C  N  Q  E  A  R  L  P  D  F  S  I  L  *  K  M  M  E  S  L  V  Y  A  L  I  Y  S  T  S  C  I  L   </first_frame>
            <second_frame>  F  H  L  E  F  *  K  N  D  I  S  Y  F  L  A  K  K  L  F  F  R  I  S  L  Y  S  G  L  E  Y  L  K  I  N  I  F  K  I  K  F  T  R  *  T  *  Y  Y  Y  F  R  S  T  *  T  *  I  N  F  A  I  K  L  R  V  C  R  T  E  R  D  G  G  R  L  V  I  L  V  N  I  R  G  S  S  S  K  V  G  T  *  S  S  V  A  L  Y  F  V  P  V  P  K  K  R  A  S  H  F  H  I  H  L  I  A  L  H  C  I  L  Y  F  F  I  Y  N  S  I  Q  S  P  N  R  I  R  T  G  I  L  V  S  D  T  F  Q  N  V  A  L  C  V  A  W  S  S  R  F  L  Q  Q  I  Y  L  R  R  R  P  F  S  P  T  L  L  L  T  N   : *  C  G  R  L  V  L  H  G  S  R  S  H  I  *  C  G  G  G  W  C  R  R  C  W  A  S  C  S  N  R  V  V  *  A  W  I  Q  Y  C  L  H  N  Q  A  L  S  Y  S  I  S  H  C  C  S  S   : G  W  Y  K  C  C  I  R  Q  H  D  R  R  R  L  E  V  A  H  V  *  Y  S  Q  R  K  *  L  V  R :   *  S  G  C  Y  P  I  H  V  *  R  S  S  K  S  S  Y  R  A  *  E  L  W  F  A  F  L  S  N  R  R  W  *  N  I  S  T  C  I  W  W  S  K  P  G  L  W  E  R :   R  T  S  I  S  L  C  M  R  C  R  S  D  W  A  C  S  I  A  Y  S  L  W  P  G  H  E  A  *  Y  T  V  F  C  G  I  F  R  F  G  F  T  N  E  Q  *  W :   E  L  P  R  C  N  S  T  K  Y  G  G  W  Y  L  A  S  I  P  C  C  Q  Y  N  F  G  H  R   : G  L  W  P  S  L  L  L  G  N  I  C  S  Y  L  H  W  R  W  *  C  Y  G  C  A  C  W  A  S  S  S   : G  S  *  V  C  A  I  S  S  N  W  Y  I  W  G  W  L  P  H  Y  *  R :   I  S  R  *  R  W  Y  P  E  E  *  *  G  *  A  I  Y  G  K  V  C  P  N  C  Q  G  S  C  L  K  R  C  C  F  Q  I  Y  D  Y  G  N  S  R  R  A  W  C  R :   T  F  E  G  P  Y  L  S  S  P  Q  S  L  T  S  R  G  S  *  G  E  T  S  G  Y  L  *  N  S  C  H  F  R  W  C  *  C  N  *  G  T  N  S  C  F  T  Y  R  A  L  *  Y  G  R  N  P  N  *  L  P  W  T   : G  G  H  *  K  R  G  *  S  R  C  C  D  P  W  T  D  G  C  W  *  S  S  M  R  I  C  S  W  C  Q  S  S  W  C  K  F  S  S  R  Y  C  C  F  W  T  G  M  C  *  *  G  C  R  D  P  K  T  R :   R  G  T  K  A  T  *  K  R  C  W  G  E  D  H  C  M  V  G  Q  D  *  E  L  K  W  F  I  A  H  L  K  D  K  A  G  H  A  K  S  Y  A  K  Q  C  C  C  L  P  H  T  R  D  I  R  G  R :   L  P  A  H  *  Q  N  M  G  E  F  P  *  C  S  V  E  G  Q  R  F  N  M  :  E  H  R  S  Y  R  D  Y  *  V  G  K  S  F  N  *  C  M  H  H  H  A  L  S  R  G  K  K  R  K  Q  R  S  S  C  S  *  R  F  Y   : E  K  R  *  *  E  V  D  E  T  H  H  R  :  I  L  G  G  R  E  S  S  A  R  I  Q  T  S  A  Y  E  H  S  R  *  R  S  R  V  V  P  T  K  G  S  C  L  L  I  Y  S  F  I  G  G  F  G  W  R  R  S  *  *  *  G  R  L  Q  *  I  A  K  I  V  K  F  W  *  *  L  F  D  L  F  V  R  *  I  V  S  S  L  *  S  V  H  K  Y  *  K  Q  N  T  V  C  L  V  I  R  K  Q  G  F  L  T  F  R  S  C  R  R  *  W  N  H  L  F  M  L  L  Y  T  L  L  L  A  F  *  </second_frame>
            <third_frame>   F  I  *  N  F  K  R  M  I  F  H  I  F  L  R  K  N  F  F  L  G  F  H  Y  I  Q  V  W  N  I  S  K  L  I  F  L  K  *  N  L  H  V  K  R  N  T  I  I  L  G  L  H  K  H  K  L  I  L  R  L  N  Y  G  F  V  V  Q  S  V  T  V  A  V  *  *  Y  W  L  T  L  G  V  V  P  V  K  W  E  H  N  R  Q  S  P  Y  T  L  S  R  Y  P  K  K  E  H  P  T  F  T  S  I  *  L  L  Y  I  V  F  C  T  S  S  S  I  T  P  F  N  L  R  T  E  S  A  P  A  Y  W  F  P  I  R  F  R  M  W  R  C  V  S  R  G  L  R  A  S  S  N  R  S  I  S  G  G  G  H  F  R  R  L  F  S  S  Q  T  :  N  V  G  G  S  S  Y  T  V  V  D  H  T  Y  D  A  V  V  V  G  A  G  G  A  G  L  R  A  A  I  G  L  S  E  H  G  F  N  T  A  C  I  T  K  L  F  P  T  R  S  H  T  V  A  A  Q  :  G  G  I  N  A  A  L  G  N  M  T  E  D  D  W  R  W  H  M  Y  D  T  V  K  G  S  D  W  L   : G  D  Q  D  A  I  Q  Y  M  C  R  E  A  P  K  A  V  I  E  L  E  N  Y  G  L  P  F  S  R  T  E  D  G  K  I  Y  Q  R  A  F  G  G  Q  S  L  D  F  G  K   : G  G  Q  A  Y  R  C  A  C  A  A  D  R  T  G  H  A  L  L  H  T  L  Y  G  Q  A  M  K  H  N  T  Q  F  F  V  E  Y  F  A  L  D  L  L  M  N  S  D   : G  S  C  Q  G  V  I  A  L  N  M  E  D  G  T  L  H  R  F  R  A  A  N  T  I  L  A  T  G  :  G  Y  G  R  A  Y  F  S  A  T  S  A  H  T  C  T  G  D  G  N  A  M  V  A  R  A  G  L  P  L  Q  :  D  L  E  F  V  Q  F  H  P  T  G  I  Y  G  A  G  C  L  I  T  E   : G  S  R  G  E  G  G  I  L  R  N  S  E  G  E  R  F  M  E  R  Y  A  P  T  A  K  D  L  A  S  R  D  V  V  S  R  S  M  T  M  E  I  R  E  G  R  G  V   : G  P  L  K  D  H  I  Y  L  H  L  N  H  L  P  P  E  V  L  K  E  R  L  P  G  I  S  E  T  A  A  I  F  A  G  V  D  V  T  K  E  P  I  P  V  L  P  T  V  H  Y  N  M  G  G  I  P  T  N  Y  H  G  Q  :  V  V  T  K  N  G  D  D  P  D  A  V  I  P  G  L  M  A  A  G  E  A  A  C  A  S  V  H  G  A  N  R  L  G  A  N  S  L  L  D  I  V  V  F  G  R  A  C  A  N  R  V  A  E  I  Q  K  P   : G  A  E  Q  K  P  L  E  K  D  A  G  E  R  T  I  A  W  L  D  K  I  R  N  S  N  G  S  L  P  T  S  K  I  R  L  D  M  Q  R  V  M  Q  N  N  A  A  V  F  R  T  Q  E  T  L  E  E   : G  C  Q  L  I  D  K  T  W  E  S  F  H  D  V  Q  L  K  D  R  G  L  I  W :   N  T  D  L  I  E  T  I  E  L  E  N  L  L  I  N  A  C  I  T  M  H  S  A  E  A  R  K  E  S  R  G  A  H  A  R  E  D  F  T  :  K  R  D  D  E  K  W  M  K  H  T  I  G :   Y  W  E  D  E  K  V  R  L  E  Y  R  P  V  H  M  N  T  L  D  D  E  V  E  S  F  P  P  K  A  R  V  Y  *  Y  T  H  L  *  G  D  L  D  G  V  E  V  D  N  K  E  G  C  N  K  S  R  K  L  *  N  F  G  N  N  C  L  I  Y  L  C  D  E  L  *  A  A  C  E  V  F  I  N  I  R  S  R  T  P  F  V  L  *  S  G  S  K  A  S  *  L  F  D  L  V  E  D  D  G  I  T  C  L  C  S  Y  I  L  Y  F  L  H  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36163" stop="35975"/>
                    <exon start="35535" stop="35368"/>
                    <exon start="34829" stop="34742"/>
                    <exon start="34385" stop="34239"/>
                    <exon start="34050" stop="33910"/>
                    <exon start="33614" stop="33529"/>
                    <exon start="33439" stop="33347"/>
                    <exon start="33251" stop="33188"/>
                    <exon start="32984" stop="32841"/>
                    <exon start="32082" stop="31895"/>
                    <exon start="31780" stop="31606"/>
                    <exon start="31532" stop="31362"/>
                    <exon start="31203" stop="31134"/>
                    <exon start="31039" stop="30919"/>
                    <exon start="30830" stop="30793"/>
                    <exon start="29775" stop="29673"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1983</number_coding_nucleotides>
                  <number_encoded_amino_acids>661</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYIVFCTSSSITPFNLRTESAPAYWFPIRFRMWRCVSRGLRASSNRSISGGGHFRRLFSSQTNVGGSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFRAANTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGQVVTKNGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQKPGAEQKPLEKDAGERTIAWLDKIRNSNGSLPTSKIRLDMQRVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVQLKDRGLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTIGYWEDEKVRLEYRPVHMNTLDDEVESFPPKARVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30633" e_stop="29907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="30633" e_stop="29907" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30633" stop="29907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGAATCTGTACCTAGTGTGATCTCACAAGTGGAATTTGGAAAGGTGGGGTGTATGCAGACCTTACGCCGACCTTGTTGAGGTAGAAAAGTAGTTTCTGACAGATCCTCGGCTCAAGAAAAGCATGATCTAAAACTGATCTGACAAATACTAAAGTAAAAGCTATAGTGAAAATTTTATGGAAATGAGAAGTAGGGGCAACAAAAACAATAAAGATAGCCTCAGTAAAAGAGACAACAACAAAAATAGCTGAAAAACTGAAGAATAGGATAATAATAATAATAATTCTGATAAGAGGGAGCAAACAAGGTGCTCTAAGCTAGTAGCCTGGAACCATGCTCTCCCGTGGGAAAGAGAGAAATTGCTTGATTACCTACTAACCCCCTCTACCCTGCCTTCATGTTTTCCCATCTTTGGTCATGTTCTCAATGAGCTGAAGATGTGTTATATTATGTCTTAATTGTTTCTCCCCAATTCTTTTTCGGTCTACCTCTACCTCTTGTTGGGCCCATCACTGGCAGCCTCTCTCAAGTCTCACCTCTTCATTGGAACTTTTGTGTTCCTTCTCTCTACATGTCCGAACAATCTCTAATCCTTCCTTCCTGCATCTTTTCTCTCGTAGTGTATCCATACATCCATCATCTCGTGAAATTGATGTAATACTTCAAAAAATTATTTTTTTTTTGTTAAAATAGTATTATCCTTCAAAAATTATTATCCATCGGAA</gDNA_template>
            <first_frame> *  E  S  V  P  S  V  I  S  Q  V  E  F  G  K  V  G  C  M  Q  T  L  R  R  P  C  *  G  R  K  V  V  S  D  R  S  S  A  Q  E  K  H  D  L  K  L  I  *  Q  I  L  K  *  K  L  *  *  K  F  Y  G  N  E  K  *  G  Q  Q  K  Q  *  R  *  P  Q  *  K  R  Q  Q  Q  K  *  L  K  N  *  R  I  G  *  *  *  *  *  F  *  *  E  G  A  N  K  V  L  *  A  S  S  L  E  P  C  S  P  V  G  K  R  E  I  A  *  L  P  T  N  P  L  Y  P  A  F  M  F  S  H  L  W  S  C  S  Q  *  A  E  D  V  L  Y  Y  V  L  I  V  S  P  Q  F  F  F  G  L  P  L  P  L  V  G  P  I  T  G  S  L  S  Q  V  S  P  L  H  W  N  F  C  V  P  S  L  Y  M  S  E  Q  S  L  I  L  P  S  C  I  F  S  L  V  V  Y  P  Y  I  H  H  L  V  K  L  M  *  Y  F  K  K  L  F  F  F  C  *  N  S  I  I  L  Q  K  L  L  S  I  G  </first_frame>
            <second_frame>  E  N  L  Y  L  V  *  S  H  K  W  N  L  E  R  W  G  V  C  R  P  Y  A  D  L  V  E  V  E  K  *  F  L  T  D  P  R  L  K  K  S  M  I  *  N  *  S  D  K  Y  *  S  K  S  Y  S  E  N  F  M  E  M  R  S  R  G  N  K  N  N  K  D  S  L  S  K  R  D  N  N  K  N  S  *  K  T  E  E  *  D  N  N  N  N  N  S  D  K  R  E  Q  T  R  C  S  K  L  V  A  W  N  H  A  L  P  W  E  R  E  K  L  L  D  Y  L  L  T  P  S  T  L  P  S  C  F  P  I  F  G  H  V  L  N  E  L  K  M  C  Y  I  M  S  *  L  F  L  P  N  S  F  S  V  Y  L  Y  L  L  L  G  P  S  L  A  A  S  L  K  S  H  L  F  I  G  T  F  V  F  L  L  S  T  C  P  N  N  L  *  S  F  L  P  A  S  F  L  S  *  C  I  H  T  S  I  I  S  *  N  *  C  N  T  S  K  N  Y  F  F  F  V  K  I  V  L  S  F  K  N  Y  Y  P  S  E </second_frame>
            <third_frame>   R  I  C  T  *  C  D  L  T  S  G  I  W  K  G  G  V  Y  A  D  L  T  P  T  L  L  R  *  K  S  S  F  *  Q  I  L  G  S  R  K  A  *  S  K  T  D  L  T  N  T  K  V  K  A  I  V  K  I  L  W  K  *  E  V  G  A  T  K  T  I  K  I  A  S  V  K  E  T  T  T  K  I  A  E  K  L  K  N  R  I  I  I  I  I  I  L  I  R  G  S  K  Q  G  A  L  S  *  *  P  G  T  M  L  S  R  G  K  E  R  N  C  L  I  T  Y  *  P  P  L  P  C  L  H  V  F  P  S  L  V  M  F  S  M  S  *  R  C  V  I  L  C  L  N  C  F  S  P  I  L  F  R  S  T  S  T  S  C  W  A  H  H  W  Q  P  L  S  S  L  T  S  S  L  E  L  L  C  S  F  S  L  H  V  R  T  I  S  N  P  S  F  L  H  L  F  S  R  S  V  S  I  H  P  S  S  R  E  I  D  V  I  L  Q  K  I  I  F  F  L  L  K  *  Y  Y  P  S  K  I  I  I  H  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30196" stop="29939"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCVILCLNCFSPILFRSTSTSCWAHHWQPLSSLTSSLELLCSFSLHVRTISNPSFLHLFSRSVSIHPSSREIDVILQKIIFFLLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30201" stop="29974"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEDVLYYVLIVSPQFFFGLPLPLVGPITGSLSQVSPLHWNFCVPSLYMSEQSLILPSCIFSLVVYPYIHHLVKLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34825" e_stop="34742"/>
            <exon e_start="34385" e_stop="34239"/>
            <exon e_start="34050" e_stop="33910"/>
            <exon e_start="33614" e_stop="33529"/>
            <exon e_start="33439" e_stop="33347"/>
            <exon e_start="33251" e_stop="33188"/>
            <exon e_start="32984" e_stop="32887"/>
            <exon e_start="31173" e_stop="31134"/>
            <exon e_start="31039" e_stop="30919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.500" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34825" e_stop="34742" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.944">
            <gDNA_intron_boundary i_start="34741" i_stop="34386" i_length="356"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34385" e_stop="34239" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.971">
            <gDNA_intron_boundary i_start="34238" i_stop="34051" i_length="188"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34050" e_stop="33910" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.500" acc_prob="0.944">
            <gDNA_intron_boundary i_start="33909" i_stop="33615" i_length="295"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33614" e_stop="33529" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.943">
            <gDNA_intron_boundary i_start="33528" i_stop="33440" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33439" e_stop="33347" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="33346" i_stop="33252" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33251" e_stop="33188" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33187" i_stop="32985" i_length="203"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32984" e_stop="32887" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32886" i_stop="31174" i_length="1713"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31173" e_stop="31134" e_length="40"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="31133" i_stop="31040" i_length="94"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="31039" e_stop="30919" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34825" stop="34742"/>
              <exon start="34385" stop="34239"/>
              <exon start="34050" stop="33910"/>
              <exon start="33614" stop="33529"/>
              <exon start="33439" stop="33347"/>
              <exon start="33251" stop="33188"/>
              <exon start="32984" stop="32887"/>
              <exon start="31173" stop="31134"/>
              <exon start="31039" stop="30919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATAAATGCTGCATTAGGCAACATGACAGAAGACGATTGGAGGTGGCACATGTATGATACAGTCAAAGGAAGTGATTGGTTAG : GTGATCAGGATGCTATCCAATACATGTGTAGAGAAGCTCCAAAAGCAGTTATAGAGCTTGAGAATTATGGTTTGCCTTTCTCTCGAACAGAAGATGGTAAAATATATCAACGTGCATTTGGTGGTCAAAGCCTGGACTTTGGGAAAG : GAGGACAAGCATATCGTTGTGCATGCGCTGCAGATCGGACTGGGCATGCTCTATTGCATACTCTTTATGGCCAGGCCATGAAGCATAATACACAGTTTTTTGTGGAATATTTCGCTTTGGATTTACTAATGAACAGTGATG : GGAGCTGCCAAGGTGTAATAGCACTAAATATGGAGGATGGTACCTTGCATCGATTCCGTGCTGCCAATACAATTTTGGCCACCGGG : GGTTATGGCCGAGCTTACTTCTCGGCAACATCTGCTCATACTTGCACTGGAGATGGTAATGCTATGGTTGCGCGTGCTGGGCTTCCTCTTCAG : GATCTTGAGTTTGTGCAATTTCATCCAACTGGTATATATGGGGCTGGTTGCCTCATTACTGAAG : GATCTCGCGGTGAAGGTGGTATCCTGAGGAATAGTGAGGGTGAGCGATTTATGGAAAGGTATGCCCCAACTGCCAAGGATCTTGCCTCAAGAGATGTT : GTTTCCATGATGTTCAGTTGAAGGACAGAGGTTTAATATG : GAACACAGATCTTATAGAGACTATTGAGTTGGAAAATCTTTTAATTAATGCATGCATCACCATGCACTCAGCCGAGGCAAGAAAAGAAAGCAGAGGAGCTCATGCTCGTGAAGATTTTACG</gDNA_template>
            <first_frame> V  *  M  L  H  *  A  T  *  Q  K  T  I  G  G  G  T  C  M  I  Q  S  K  E  V  I  G  *  :  V  I  R  M  L  S  N  T  C  V  E  K  L  Q  K  Q  L  *  S  L  R  I  M  V  C  L  S  L  E  Q  K  M  V  K  Y  I  N  V  H  L  V  V  K  A  W  T  L  G  K  :  E  D  K  H  I  V  V  H  A  L  Q  I  G  L  G  M  L  Y  C  I  L  F  M  A  R  P  *  S  I  I  H  S  F  L  W  N  I  S  L  W  I  Y  *  *  T  V  M  :  G  A  A  K  V  *  *  H  *  I  W  R  M  V  P  C  I  D  S  V  L  P  I  Q  F  W  P  P  G :   V  M  A  E  L  T  S  R  Q  H  L  L  I  L  A  L  E  M  V  M  L  W  L  R  V  L  G  F  L  F  R :   I  L  S  L  C  N  F  I  Q  L  V  Y  M  G  L  V  A  S  L  L  K  :  D  L  A  V  K  V  V  S  *  G  I  V  R  V  S  D  L  W  K  G  M  P  Q  L  P  R  I  L  P  Q  E  M  L :   F  P  *  C  S  V  E  G  Q  R  F  N  M  :  E  H  R  S  Y  R  D  Y  *  V  G  K  S  F  N  *  C  M  H  H  H  A  L  S  R  G  K  K  R  K  Q  R  S  S  C  S  *  R  F  Y  </first_frame>
            <second_frame>  Y  K  C  C  I  R  Q  H  D  R  R  R  L  E  V  A  H  V  *  Y  S  Q  R  K  *  L  V  R :   *  S  G  C  Y  P  I  H  V  *  R  S  S  K  S  S  Y  R  A  *  E  L  W  F  A  F  L  S  N  R  R  W  *  N  I  S  T  C  I  W  W  S  K  P  G  L  W  E  R :   R  T  S  I  S  L  C  M  R  C  R  S  D  W  A  C  S  I  A  Y  S  L  W  P  G  H  E  A  *  Y  T  V  F  C  G  I  F  R  F  G  F  T  N  E  Q  *  W :   E  L  P  R  C  N  S  T  K  Y  G  G  W  Y  L  A  S  I  P  C  C  Q  Y  N  F  G  H  R   : G  L  W  P  S  L  L  L  G  N  I  C  S  Y  L  H  W  R  W  *  C  Y  G  C  A  C  W  A  S  S  S   : G  S  *  V  C  A  I  S  S  N  W  Y  I  W  G  W  L  P  H  Y  *  R :   I  S  R  *  R  W  Y  P  E  E  *  *  G  *  A  I  Y  G  K  V  C  P  N  C  Q  G  S  C  L  K  R  C   : C  F  H  D  V  Q  L  K  D  R  G  L  I  W :   N  T  D  L  I  E  T  I  E  L  E  N  L  L  I  N  A  C  I  T  M  H  S  A  E  A  R  K  E  S  R  G  A  H  A  R  E  D  F  T </second_frame>
            <third_frame>   I  N  A  A  L  G  N  M  T  E  D  D  W  R  W  H  M  Y  D  T  V  K  G  S  D  W  L   : G  D  Q  D  A  I  Q  Y  M  C  R  E  A  P  K  A  V  I  E  L  E  N  Y  G  L  P  F  S  R  T  E  D  G  K  I  Y  Q  R  A  F  G  G  Q  S  L  D  F  G  K   : G  G  Q  A  Y  R  C  A  C  A  A  D  R  T  G  H  A  L  L  H  T  L  Y  G  Q  A  M  K  H  N  T  Q  F  F  V  E  Y  F  A  L  D  L  L  M  N  S  D   : G  S  C  Q  G  V  I  A  L  N  M  E  D  G  T  L  H  R  F  R  A  A  N  T  I  L  A  T  G  :  G  Y  G  R  A  Y  F  S  A  T  S  A  H  T  C  T  G  D  G  N  A  M  V  A  R  A  G  L  P  L  Q  :  D  L  E  F  V  Q  F  H  P  T  G  I  Y  G  A  G  C  L  I  T  E   : G  S  R  G  E  G  G  I  L  R  N  S  E  G  E  R  F  M  E  R  Y  A  P  T  A  K  D  L  A  S  R  D  V  :  V  S  M  M  F  S  *  R  T  E  V  *  Y   : G  T  Q  I  L  *  R  L  L  S  W  K  I  F  *  L  M  H  A  S  P  C  T  Q  P  R  Q  E  K  K  A  E  E  L  M  L  V  K  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34823" stop="34742"/>
                    <exon start="34385" stop="34239"/>
                    <exon start="34050" stop="33910"/>
                    <exon start="33614" stop="33529"/>
                    <exon start="33439" stop="33347"/>
                    <exon start="33251" stop="33188"/>
                    <exon start="32984" stop="32887"/>
                    <exon start="31173" stop="31153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFRAANTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSMMFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="46613" PGL_stop="42103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46613" e_stop="46335"/>
            <exon e_start="46268" e_stop="45944"/>
            <exon e_start="45657" e_stop="45505"/>
            <exon e_start="45399" e_stop="45163"/>
            <exon e_start="45076" e_stop="44984"/>
            <exon e_start="44812" e_stop="44734"/>
            <exon e_start="44622" e_stop="44516"/>
            <exon e_start="42708" e_stop="42103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46613" e_stop="46335" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46334" i_stop="46269" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46268" e_stop="45944" e_length="325"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="45943" i_stop="45658" i_length="286"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45657" e_stop="45505" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.854" acc_prob="0.983">
            <gDNA_intron_boundary i_start="45504" i_stop="45400" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45399" e_stop="45163" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45162" i_stop="45077" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45076" e_stop="44984" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44983" i_stop="44813" i_length="171"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44812" e_stop="44734" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.919">
            <gDNA_intron_boundary i_start="44733" i_stop="44623" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44622" e_stop="44516" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.964">
            <gDNA_intron_boundary i_start="44515" i_stop="42709" i_length="1807"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="42708" e_stop="42103" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46613" stop="46335"/>
              <exon start="46268" stop="45944"/>
              <exon start="45657" stop="45505"/>
              <exon start="45399" stop="45163"/>
              <exon start="45076" stop="44984"/>
              <exon start="44812" stop="44734"/>
              <exon start="44622" stop="44516"/>
              <exon start="42708" stop="42103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCAGAAACAGAGCTTATTGAGTGTTGAAACTGAAAAAGAAGAAGAAAGAAATAGAGAAGAAGGAATAACATCAATGTCTGACTTAGAGTTTTTTCTTTTTCTTATTCCTCCAATCTTAGCAGTACTTATAATTCTTAATCTATTCAAAAGAAAACACAACTTTCAAAATCTTCCACCAGGGGATATGGGTTGGCCTTTTCTTGGTGAAACTATTGGTTATTTGAGACCTTATTCAGCTACTACTATTGGAGATTTCATGCAAGATCATATTTCTAG : GTATGGGAAAATTTTCAAGTCAAATTTGTTTGGAGAGCCAACAATAGTTTCAGCAGATGCAGGGCTAAACAGATACATTCTGCAGAATGAAGGGAGATTATTTGAGTGTAATTATCCAAGAAGTATAGGTGGGATACTTGGTAAATGGTCTATGTTAGTTCAAGTTGGACAAATGCATAGAGATATGAGGATGATTTCTCTGAATTTTTTGAGCAATGCTAGGCTAAGGAATCAACTTTTAAGTGAAGTTGAAAAGCATACTTTGCTTGTTCTTGGCTCTTGGAAACAGGATTCTGTTGTTTGTGCACAAGATGAAGCAAAGAAG : TTAACATTCAACTTTATGGCAGAGCATATCATGAGTCTACAACCTGGAAATCCAGAGACAGAGAAGCTGAAAAAAGAGTACATCACATTTATGAAAGGAGTGGTTTCTGCTCCATTGAATTTTCCAGGAACAGCTTACAGAAAGGCCTTACAG : TCTCGATCAACAATTCTTGGATTTATTGAGAGAAAAATGGAGGAGAGGCTTAAGGAAATGAACAGAAACGAAAACGACCTTCTAGGTTGGGTTCTGAAGAATTCAAATCTCTCAAAAGAGCAAATTCTTGATTTGCTACTGAGTTTGCTCTTTGCTGGCCATGAAACTTCATCAGTAGCAATAGCTCTGTCTATTTTCTTACTCGAAAGCTGTCCTGCTGCTGTTCAACAATTAACA : GAAGAGCACTTGGAGATTTCCCGGGCAAAAAAACAGTCAGGAGAAACAGAATTAAATTGGGATGACTACAAGAAAATGGAATTCACCCAATGT : GTTATTAATGAGACTCTAAGACTTGGGAATGTAGTGAGGTTTCTGCACAGGAAAGCTGTGAAAGATGTTCGATATAAAG : GTTATGATATTCCATGTGGATGGAAAGTGTTGCCGGTGATTTCAGCAGCGCATTTAGATCCTTCACTTTTCGACCGACCTCACGACTTTGATCCTTGGAGATGGCAG : AACGCAGAAGAGTCGCCTTCAGGTAAAGGAGGAAGCACAGGCACAAGCAGCACAACAAAAAGTAGTAATAATTTCATGCCATTTGGGGGAGGTCCACGTCTATGTGCAGGATCTGAACTGGCCAAACTTGAGATGGCCATTTTCATTCACTATCTTGTTCTTAATTTTCACTGGAAATTAGCTGCAACTGATCAGGCTTTTGCCTATCCTTACGTAGATTTTCCCAATGCCCTACCTATCAATATCCAACATCGATCGTTAAATAAATTACATGACTAGCCCTAATTCATCGTATTAGAATCTACGTTCGCTCGCACATCGCATCGTCTATGGGTAAACATTTTATTATATTGTATAAATAAAAAATGGTAGCTGAACAAATGGGAAAGAGGATGGTACTTGAAATGATTCAAACCAAAAGAGATGTTTTGTAAATCTAGCTAATTATCTAGGAGGTGAAGCAGCTGCTACAGTTTTTGTTCTCTCTTTTTTTTTTTTGCTTTATCTCTTCTCTTGTTTTTTTTTTCTTTTTTCTTTCCGTTACGTAGTACATAATTTTCTATGTAATTAAATACAGCGAAATTATTCGATTCTCCGTTTTTACTT</gDNA_template>
            <first_frame> A  S  E  T  E  L  I  E  C  *  N  *  K  R  R  R  K  K  *  R  R  R  N  N  I  N  V  *  L  R  V  F  S  F  S  Y  S  S  N  L  S  S  T  Y  N  S  *  S  I  Q  K  K  T  Q  L  S  K  S  S  T  R  G  Y  G  L  A  F  S  W  *  N  Y  W  L  F  E  T  L  F  S  Y  Y  Y  W  R  F  H  A  R  S  Y  F  *  :  V  W  E  N  F  Q  V  K  F  V  W  R  A  N  N  S  F  S  R  C  R  A  K  Q  I  H  S  A  E  *  R  E  I  I  *  V  *  L  S  K  K  Y  R  W  D  T  W  *  M  V  Y  V  S  S  S  W  T  N  A  *  R  Y  E  D  D  F  S  E  F  F  E  Q  C  *  A  K  E  S  T  F  K  *  S  *  K  A  Y  F  A  C  S  W  L  L  E  T  G  F  C  C  L  C  T  R  *  S  K  E   : V  N  I  Q  L  Y  G  R  A  Y  H  E  S  T  T  W  K  S  R  D  R  E  A  E  K  R  V  H  H  I  Y  E  R  S  G  F  C  S  I  E  F  S  R  N  S  L  Q  K  G  L  T   : V  S  I  N  N  S  W  I  Y  *  E  K  N  G  G  E  A  *  G  N  E  Q  K  R  K  R  P  S  R  L  G  S  E  E  F  K  S  L  K  R  A  N  S  *  F  A  T  E  F  A  L  C  W  P  *  N  F  I  S  S  N  S  S  V  Y  F  L  T  R  K  L  S  C  C  C  S  T  I  N   : R  R  A  L  G  D  F  P  G  K  K  T  V  R  R  N  R  I  K  L  G  *  L  Q  E  N  G  I  H  P  M   : C  Y  *  *  D  S  K  T  W  E  C  S  E  V  S  A  Q  E  S  C  E  R  C  S  I  *  R :   L  *  Y  S  M  W  M  E  S  V  A  G  D  F  S  S  A  F  R  S  F  T  F  R  P  T  S  R  L  *  S  L  E  M  A   : E  R  R  R  V  A  F  R  *  R  R  K  H  R  H  K  Q  H  N  K  K  *  *  *  F  H  A  I  W  G  R  S  T  S  M  C  R  I  *  T  G  Q  T  *  D  G  H  F  H  S  L  S  C  S  *  F  S  L  E  I  S  C  N  *  S  G  F  C  L  S  L  R  R  F  S  Q  C  P  T  Y  Q  Y  P  T  S  I  V  K  *  I  T  *  L  A  L  I  H  R  I  R  I  Y  V  R  S  H  I  A  S  S  M  G  K  H  F  I  I  L  Y  K  *  K  M  V  A  E  Q  M  G  K  R  M  V  L  E  M  I  Q  T  K  R  D  V  L  *  I  *  L  I  I  *  E  V  K  Q  L  L  Q  F  L  F  S  L  F  F  F  C  F  I  S  S  L  V  F  F  F  F  F  L  S  V  T  *  Y  I  I  F  Y  V  I  K  Y  S  E  I  I  R  F  S  V  F  T  </first_frame>
            <second_frame>  L  Q  K  Q  S  L  L  S  V  E  T  E  K  E  E  E  R  N  R  E  E  G  I  T  S  M  S  D  L  E  F  F  L  F  L  I  P  P  I  L  A  V  L  I  I  L  N  L  F  K  R  K  H  N  F  Q  N  L  P  P  G  D  M  G  W  P  F  L  G  E  T  I  G  Y  L  R  P  Y  S  A  T  T  I  G  D  F  M  Q  D  H  I  S  R :   Y  G  K  I  F  K  S  N  L  F  G  E  P  T  I  V  S  A  D  A  G  L  N  R  Y  I  L  Q  N  E  G  R  L  F  E  C  N  Y  P  R  S  I  G  G  I  L  G  K  W  S  M  L  V  Q  V  G  Q  M  H  R  D  M  R  M  I  S  L  N  F  L  S  N  A  R  L  R  N  Q  L  L  S  E  V  E  K  H  T  L  L  V  L  G  S  W  K  Q  D  S  V  V  C  A  Q  D  E  A  K  K  :  L  T  F  N  F  M  A  E  H  I  M  S  L  Q  P  G  N  P  E  T  E  K  L  K  K  E  Y  I  T  F  M  K  G  V  V  S  A  P  L  N  F  P  G  T  A  Y  R  K  A  L  Q  :  S  R  S  T  I  L  G  F  I  E  R  K  M  E  E  R  L  K  E  M  N  R  N  E  N  D  L  L  G  W  V  L  K  N  S  N  L  S  K  E  Q  I  L  D  L  L  L  S  L  L  F  A  G  H  E  T  S  S  V  A  I  A  L  S  I  F  L  L  E  S  C  P  A  A  V  Q  Q  L  T  :  E  E  H  L  E  I  S  R  A  K  K  Q  S  G  E  T  E  L  N  W  D  D  Y  K  K  M  E  F  T  Q  C  :  V  I  N  E  T  L  R  L  G  N  V  V  R  F  L  H  R  K  A  V  K  D  V  R  Y  K   : G  Y  D  I  P  C  G  W  K  V  L  P  V  I  S  A  A  H  L  D  P  S  L  F  D  R  P  H  D  F  D  P  W  R  W  Q  :  N  A  E  E  S  P  S  G  K  G  G  S  T  G  T  S  S  T  T  K  S  S  N  N  F  M  P  F  G  G  G  P  R  L  C  A  G  S  E  L  A  K  L  E  M  A  I  F  I  H  Y  L  V  L  N  F  H  W  K  L  A  A  T  D  Q  A  F  A  Y  P  Y  V  D  F  P  N  A  L  P  I  N  I  Q  H  R  S  L  N  K  L  H  D  *  P  *  F  I  V  L  E  S  T  F  A  R  T  S  H  R  L  W  V  N  I  L  L  Y  C  I  N  K  K  W  *  L  N  K  W  E  R  G  W  Y  L  K  *  F  K  P  K  E  M  F  C  K  S  S  *  L  S  R  R  *  S  S  C  Y  S  F  C  S  L  F  F  F  F  A  L  S  L  L  L  F  F  F  S  F  F  F  P  L  R  S  T  *  F  S  M  *  L  N  T  A  K  L  F  D  S  P  F  L  L </second_frame>
            <third_frame>   F  R  N  R  A  Y  *  V  L  K  L  K  K  K  K  K  E  I  E  K  K  E  *  H  Q  C  L  T  *  S  F  F  F  F  L  F  L  Q  S  *  Q  Y  L  *  F  L  I  Y  S  K  E  N  T  T  F  K  I  F  H  Q  G  I  W  V  G  L  F  L  V  K  L  L  V  I  *  D  L  I  Q  L  L  L  L  E  I  S  C  K  I  I  F  L   : G  M  G  K  F  S  S  Q  I  C  L  E  S  Q  Q  *  F  Q  Q  M  Q  G  *  T  D  T  F  C  R  M  K  G  D  Y  L  S  V  I  I  Q  E  V  *  V  G  Y  L  V  N  G  L  C  *  F  K  L  D  K  C  I  E  I  *  G  *  F  L  *  I  F  *  A  M  L  G  *  G  I  N  F  *  V  K  L  K  S  I  L  C  L  F  L  A  L  G  N  R  I  L  L  F  V  H  K  M  K  Q  R  S :   *  H  S  T  L  W  Q  S  I  S  *  V  Y  N  L  E  I  Q  R  Q  R  S  *  K  K  S  T  S  H  L  *  K  E  W  F  L  L  H  *  I  F  Q  E  Q  L  T  E  R  P  Y  S :   L  D  Q  Q  F  L  D  L  L  R  E  K  W  R  R  G  L  R  K  *  T  E  T  K  T  T  F  *  V  G  F  *  R  I  Q  I  S  Q  K  S  K  F  L  I  C  Y  *  V  C  S  L  L  A  M  K  L  H  Q  *  Q  *  L  C  L  F  S  Y  S  K  A  V  L  L  L  F  N  N  *  Q :   K  S  T  W  R  F  P  G  Q  K  N  S  Q  E  K  Q  N  *  I  G  M  T  T  R  K  W  N  S  P  N  V :   L  L  M  R  L  *  D  L  G  M  *  *  G  F  C  T  G  K  L  *  K  M  F  D  I  K  :  V  M  I  F  H  V  D  G  K  C  C  R  *  F  Q  Q  R  I  *  I  L  H  F  S  T  D  L  T  T  L  I  L  G  D  G  R :   T  Q  K  S  R  L  Q  V  K  E  E  A  Q  A  Q  A  A  Q  Q  K  V  V  I  I  S  C  H  L  G  E  V  H  V  Y  V  Q  D  L  N  W  P  N  L  R  W  P  F  S  F  T  I  L  F  L  I  F  T  G  N  *  L  Q  L  I  R  L  L  P  I  L  T  *  I  F  P  M  P  Y  L  S  I  S  N  I  D  R  *  I  N  Y  M  T  S  P  N  S  S  Y  *  N  L  R  S  L  A  H  R  I  V  Y  G  *  T  F  Y  Y  I  V  *  I  K  N  G  S  *  T  N  G  K  E  D  G  T  *  N  D  S  N  Q  K  R  C  F  V  N  L  A  N  Y  L  G  G  E  A  A  A  T  V  F  V  L  S  F  F  F  L  L  Y  L  F  S  C  F  F  F  L  F  S  F  R  Y  V  V  H  N  F  L  C  N  *  I  Q  R  N  Y  S  I  L  R  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46612" stop="46335"/>
                    <exon start="46268" stop="45944"/>
                    <exon start="45657" stop="45505"/>
                    <exon start="45399" stop="45163"/>
                    <exon start="45076" stop="44984"/>
                    <exon start="44812" stop="44734"/>
                    <exon start="44622" stop="44516"/>
                    <exon start="42708" stop="42430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1548</number_coding_nucleotides>
                  <number_encoded_amino_acids>516</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQKQSLLSVETEKEEERNREEGITSMSDLEFFLFLIPPILAVLIILNLFKRKHNFQNLPPGDMGWPFLGETIGYLRPYSATTIGDFMQDHISRYGKIFKSNLFGEPTIVSADAGLNRYILQNEGRLFECNYPRSIGGILGKWSMLVQVGQMHRDMRMISLNFLSNARLRNQLLSEVEKHTLLVLGSWKQDSVVCAQDEAKKLTFNFMAEHIMSLQPGNPETEKLKKEYITFMKGVVSAPLNFPGTAYRKALQSRSTILGFIERKMEERLKEMNRNENDLLGWVLKNSNLSKEQILDLLLSLLFAGHETSSVAIALSIFLLESCPAAVQQLTEEHLEISRAKKQSGETELNWDDYKKMEFTQCVINETLRLGNVVRFLHRKAVKDVRYKGYDIPCGWKVLPVISAAHLDPSLFDRPHDFDPWRWQNAEESPSGKGGSTGTSSTTKSSNNFMPFGGGPRLCAGSELAKLEMAIFIHYLVLNFHWKLAATDQAFAYPYVDFPNALPINIQHRSLNKLHD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="65168" PGL_stop="59103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65168" e_stop="64775"/>
            <exon e_start="59547" e_stop="59103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="0.997"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="65168" e_stop="64775" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64774" i_stop="59548" i_length="5227"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="59547" e_stop="59103" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65168" stop="64775"/>
              <exon start="59547" stop="59103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTGTTTCTCTTAATAAAATAGCATACTGTATTAAAAAAATCTTCTATCTTATTTCGTCTAACTGTGTACTGGGGTCATGCGAATCCCTCTCAGTTTAGCATTTTCTTCTTCGTTTTCCTTTTGCGTTGGACCAGTGTAACAGCTTATTCGGAGGGATCGTTTCTTCAATTGCTAATCTACCAATACCTAGGTGTAGTTCGTTGCTTCTGAATTTGCAATTGGTATTGAAGGCAAAAATTAATTGAGATCGGAGAATCAGGTTTTCGATCGTTTTGGTTAACATGATAACAAGGTCTAAACTGGTTGAGCAGCTCAGAGATTATCAGATCCGATCTCAACACAAGTGCCCTCCTCTTACTTTCTTTTCACCAAAGCTTTATCTCTCCAACTG : GGCTGATGTTGCAGTTGCTTTATTCTGCGCCTTGTTATTTGGTGTGCTTATATTATCATCATATGTGGCCCTTTATTTACGACATTACTGGAGTTCCTTTCTCATTATAAGCCTTGCCATTACCCTTCCAGTGCGTCTGAGAATGTTACGACAGGCTCATGCAAGAAAGAAAGTAAGACAGTTACCTTTGTCTATGTGAACTTCCTTCTACTTCTGGAAGCACCAAACAGTGGTTTAAGTGAAAGGAATACCTTTTGCACAAAAGTGCTCTCCAATTGTAGTAATACAGTTCTTTGATCTTCGTCACATAGGCTGACCAATCTTCTGCTGTGAAAGATGGGACACACCCTTCATATTACTCTTGATGACTCATTCATTAAGAAACAGGATTTAGACGATCAATTAGCTCCCTATGAAATGAACAACCAGAGCTCAAGGTTTCAGC</gDNA_template>
            <first_frame> N  L  F  L  L  I  K  *  H  T  V  L  K  K  S  S  I  L  F  R  L  T  V  Y  W  G  H  A  N  P  S  Q  F  S  I  F  F  F  V  F  L  L  R  W  T  S  V  T  A  Y  S  E  G  S  F  L  Q  L  L  I  Y  Q  Y  L  G  V  V  R  C  F  *  I  C  N  W  Y  *  R  Q  K  L  I  E  I  G  E  S  G  F  R  S  F  W  L  T  *  *  Q  G  L  N  W  L  S  S  S  E  I  I  R  S  D  L  N  T  S  A  L  L  L  L  S  F  H  Q  S  F  I  S  P  T   : G  L  M  L  Q  L  L  Y  S  A  P  C  Y  L  V  C  L  Y  Y  H  H  M  W  P  F  I  Y  D  I  T  G  V  P  F  S  L  *  A  L  P  L  P  F  Q  C  V  *  E  C  Y  D  R  L  M  Q  E  R  K  *  D  S  Y  L  C  L  C  E  L  P  S  T  S  G  S  T  K  Q  W  F  K  *  K  E  Y  L  L  H  K  S  A  L  Q  L  *  *  Y  S  S  L  I  F  V  T  *  A  D  Q  S  S  A  V  K  D  G  T  H  P  S  Y  Y  S  *  *  L  I  H  *  E  T  G  F  R  R  S  I  S  S  L  *  N  E  Q  P  E  L  K  V  S   </first_frame>
            <second_frame>  I  C  F  S  *  *  N  S  I  L  Y  *  K  N  L  L  S  Y  F  V  *  L  C  T  G  V  M  R  I  P  L  S  L  A  F  S  S  S  F  S  F  C  V  G  P  V  *  Q  L  I  R  R  D  R  F  F  N  C  *  S  T  N  T  *  V  *  F  V  A  S  E  F  A  I  G  I  E  G  K  N  *  L  R  S  E  N  Q  V  F  D  R  F  G  *  H  D  N  K  V  *  T  G  *  A  A  Q  R  L  S  D  P  I  S  T  Q  V  P  S  S  Y  F  L  F  T  K  A  L  S  L  Q  L  :  G  *  C  C  S  C  F  I  L  R  L  V  I  W  C  A  Y  I  I  I  I  C  G  P  L  F  T  T  L  L  E  F  L  S  H  Y  K  P  C  H  Y  P  S  S  A  S  E  N  V  T  T  G  S  C  K  K  E  S  K  T  V  T  F  V  Y  V  N  F  L  L  L  L  E  A  P  N  S  G  L  S  E  R  N  T  F  C  T  K  V  L  S  N  C  S  N  T  V  L  *  S  S  S  H  R  L  T  N  L  L  L  *  K  M  G  H  T  L  H  I  T  L  D  D  S  F  I  K  K  Q  D  L  D  D  Q  L  A  P  Y  E  M  N  N  Q  S  S  R  F  Q  </second_frame>
            <third_frame>   F  V  S  L  N  K  I  A  Y  C  I  K  K  I  F  Y  L  I  S  S  N  C  V  L  G  S  C  E  S  L  S  V  *  H  F  L  L  R  F  P  F  A  L  D  Q  C  N  S  L  F  G  G  I  V  S  S  I  A  N  L  P  I  P  R  C  S  S  L  L  L  N  L  Q  L  V  L  K  A  K  I  N  *  D  R  R  I  R  F  S  I  V  L  V  N  M  I  T  R  S  K  L  V  E  Q  L  R  D  Y  Q  I  R  S  Q  H  K  C  P  P  L  T  F  F  S  P  K  L  Y  L  S  N  W :   A  D  V  A  V  A  L  F  C  A  L  L  F  G  V  L  I  L  S  S  Y  V  A  L  Y  L  R  H  Y  W  S  S  F  L  I  I  S  L  A  I  T  L  P  V  R  L  R  M  L  R  Q  A  H  A  R  K  K  V  R  Q  L  P  L  S  M  *  T  S  F  Y  F  W  K  H  Q  T  V  V  *  V  K  G  I  P  F  A  Q  K  C  S  P  I  V  V  I  Q  F  F  D  L  R  H  I  G  *  P  I  F  C  C  E  R  W  D  T  P  F  I  L  L  L  M  T  H  S  L  R  N  R  I  *  T  I  N  *  L  P  M  K  *  T  T  R  A  Q  G  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64920" stop="64775"/>
                    <exon start="59547" stop="59349"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DRRIRFSIVLVNMITRSKLVEQLRDYQIRSQHKCPPLTFFSPKLYLSNWADVAVALFCALLFGVLILSSYVALYLRHYWSSFLIISLAITLPVRLRMLRQAHARKKVRQLPLSM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59541" stop="59251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCSCFILRLVIWCAYIIIICGPLFTTLLEFLSHYKPCHYPSSASENVTTGSCKKESKTVTFVYVNFLLLLEAPNSGLSERNTFCTKVLSNCSNTVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65007" e_stop="64775"/>
            <exon e_start="61788" e_stop="61476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65007" e_stop="64775" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="64774" i_stop="61789" i_length="2986"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61788" e_stop="61476" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65007" stop="64775"/>
              <exon start="61788" stop="61476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCTTCAATTGCTAATCTACCAATACCTAGGTGTAGTTCGTTGCTTCTGAATTTGCAATTGGTATTGAAGGCAAAAATTAATTGAGATCGGAGAATCAGGTTTTCGATCGTTTTGGTTAACATGATAACAAGGTCTAAACTGGTTGAGCAGCTCAGAGATTATCAGATCCGATCTCAACACAAGTGCCCTCCTCTTACTTTCTTTTCACCAAAGCTTTATCTCTCCAACTG : AAATTGCACCCAAGGTGTTGCCTAGTGGTCAATGAAGTGAGAAGAGAACCATGAGGTCTCAAGTTCAAATCCTAGCGGAGATAAAAAGACTTGGGGGTTTCTTCCCATTTGCCTAAGCCTTTGAGGCAAAATTATCTGGTACCTATGCTGGTGGGAGATAACAGGTGCCCAATGGAATAATTAAGGCACAAGCAAGCAGGCTCGGACACCACGATTATTTTAAAAAGAAGTATGCTGGAAATTGCTTTTTTTGTTTTGCATGTGAATAATTTAGAGAACGCCACAGATGCACCAATATCTCCAGTACACATGT</gDNA_template>
            <first_frame> V  S  S  I  A  N  L  P  I  P  R  C  S  S  L  L  L  N  L  Q  L  V  L  K  A  K  I  N  *  D  R  R  I  R  F  S  I  V  L  V  N  M  I  T  R  S  K  L  V  E  Q  L  R  D  Y  Q  I  R  S  Q  H  K  C  P  P  L  T  F  F  S  P  K  L  Y  L  S  N  * :   N  C  T  Q  G  V  A  *  W  S  M  K  *  E  E  N  H  E  V  S  S  S  N  P  S  G  D  K  K  T  W  G  F  L  P  I  C  L  S  L  *  G  K  I  I  W  Y  L  C  W  W  E  I  T  G  A  Q  W  N  N  *  G  T  S  K  Q  A  R  T  P  R  L  F  *  K  E  V  C  W  K  L  L  F  L  F  C  M  *  I  I  *  R  T  P  Q  M  H  Q  Y  L  Q  Y  T  C </first_frame>
            <second_frame>  F  L  Q  L  L  I  Y  Q  Y  L  G  V  V  R  C  F  *  I  C  N  W  Y  *  R  Q  K  L  I  E  I  G  E  S  G  F  R  S  F  W  L  T  *  *  Q  G  L  N  W  L  S  S  S  E  I  I  R  S  D  L  N  T  S  A  L  L  L  L  S  F  H  Q  S  F  I  S  P  T   : E  I  A  P  K  V  L  P  S  G  Q  *  S  E  K  R  T  M  R  S  Q  V  Q  I  L  A  E  I  K  R  L  G  G  F  F  P  F  A  *  A  F  E  A  K  L  S  G  T  Y  A  G  G  R  *  Q  V  P  N  G  I  I  K  A  Q  A  S  R  L  G  H  H  D  Y  F  K  K  K  Y  A  G  N  C  F  F  C  F  A  C  E  *  F  R  E  R  H  R  C  T  N  I  S  S  T  H   </second_frame>
            <third_frame>   F  F  N  C  *  S  T  N  T  *  V  *  F  V  A  S  E  F  A  I  G  I  E  G  K  N  *  L  R  S  E  N  Q  V  F  D  R  F  G  *  H  D  N  K  V  *  T  G  *  A  A  Q  R  L  S  D  P  I  S  T  Q  V  P  S  S  Y  F  L  F  T  K  A  L  S  L  Q  L  :  K  L  H  P  R  C  C  L  V  V  N  E  V  R  R  E  P  *  G  L  K  F  K  S  *  R  R  *  K  D  L  G  V  S  S  H  L  P  K  P  L  R  Q  N  Y  L  V  P  M  L  V  G  D  N  R  C  P  M  E  *  L  R  H  K  Q  A  G  S  D  T  T  I  I  L  K  R  S  M  L  E  I  A  F  F  V  L  H  V  N  N  L  E  N  A  T  D  A  P  I  S  P  V  H  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0128E12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66952" PGL_stop="68590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66952" e_stop="67143"/>
            <exon e_start="67431" e_stop="67483"/>
            <exon e_start="67588" e_stop="67697"/>
            <exon e_start="68014" e_stop="68181"/>
            <exon e_start="68253" e_stop="68477"/>
            <exon e_start="68570" e_stop="68590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.655" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.940" e_score="0.951"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="66952" e_stop="67143" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67144" i_stop="67430" i_length="287"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67431" e_stop="67483" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.655" acc_prob="0.953">
            <gDNA_intron_boundary i_start="67484" i_stop="67587" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67588" e_stop="67697" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.924">
            <gDNA_intron_boundary i_start="67698" i_stop="68013" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68014" e_stop="68181" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="68182" i_stop="68252" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="0.951">
            <gDNA_exon_boundary e_start="68253" e_stop="68477" e_length="225"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.940">
            <gDNA_intron_boundary i_start="68478" i_stop="68569" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68570" e_stop="68590" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66952" stop="67143"/>
              <exon start="67431" stop="67483"/>
              <exon start="67588" stop="67697"/>
              <exon start="68014" stop="68181"/>
              <exon start="68253" stop="68477"/>
              <exon start="68570" stop="68590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTCATTTTTGGGGAAGAAGAAGGAGGGAGATCTATAATGGCGACGCCAAGAGCAGATAGGGAATTAGAGCTTCTCATACCAATGGGAGGCGTTGAGAATATTAATGCTAGTCACTCCAAATCTTCTTCTCCTTCTCATTCCCCTAAGATTCCATCTTCTTCTAGGTCTCATCACTCTTCTGGCAAAGAG : GCATTTAGCAAAGTTATTCGTAGCTGGACTTGGAAAAAGTTCATCAGCGGATG : TGTCATCTTATTTCCCATAGCCATAACTTTTTACATCACCTGGTGGTTCATTCATTTTGTGGATGCCTTCTTTTCCCCGATCTATAACCACCTTGGAATCAATGTATTTG : GCCTTGGATTTGTTACCTCCATGACTTTCATCTTCTTCGTTGGGGTGTTCATGTCCTCATGGTTAGGTGCATCTCTTCTTAGTTTAGGAGAGTGGTTCATAAAAAAAATGCCCCTCATGAGCTACATCTACTCTGCCTCCAAGCAAATTAGCTCAGCAATTTCACCAG : ATAAAACTTCACATGCCTTCAAAGAAGTGGCCATAATAAGGCATCCGCGTCTTGGTGAATATGCATTTGGTTTTATCACTTCAACAGTCATACTTCACAAGCATTCAGGTGCAGAGGAACTCTGCTGTGTTTATGTGCCAACTAATCACCTCTATCTTGGAGATATCTTTCTTGTGAATTCTAAAGACGTTATGAGGCCCAATCTCTCTGTTCGAGAGGGTATAG : AAATTGTAATCTCCGGGGGCA</gDNA_template>
            <first_frame> I  F  I  F  G  E  E  E  G  G  R  S  I  M  A  T  P  R  A  D  R  E  L  E  L  L  I  P  M  G  G  V  E  N  I  N  A  S  H  S  K  S  S  S  P  S  H  S  P  K  I  P  S  S  S  R  S  H  H  S  S  G  K  E  :  A  F  S  K  V  I  R  S  W  T  W  K  K  F  I  S  G  C :   V  I  L  F  P  I  A  I  T  F  Y  I  T  W  W  F  I  H  F  V  D  A  F  F  S  P  I  Y  N  H  L  G  I  N  V  F   : G  L  G  F  V  T  S  M  T  F  I  F  F  V  G  V  F  M  S  S  W  L  G  A  S  L  L  S  L  G  E  W  F  I  K  K  M  P  L  M  S  Y  I  Y  S  A  S  K  Q  I  S  S  A  I  S  P   : D  K  T  S  H  A  F  K  E  V  A  I  I  R  H  P  R  L  G  E  Y  A  F  G  F  I  T  S  T  V  I  L  H  K  H  S  G  A  E  E  L  C  C  V  Y  V  P  T  N  H  L  Y  L  G  D  I  F  L  V  N  S  K  D  V  M  R  P  N  L  S  V  R  E  G  I   : E  I  V  I  S  G  G  </first_frame>
            <second_frame>  Y  S  F  L  G  K  K  K  E  G  D  L  *  W  R  R  Q  E  Q  I  G  N  *  S  F  S  Y  Q  W  E  A  L  R  I  L  M  L  V  T  P  N  L  L  L  L  L  I  P  L  R  F  H  L  L  L  G  L  I  T  L  L  A  K  R :   H  L  A  K  L  F  V  A  G  L  G  K  S  S  S  A  D   : V  S  S  Y  F  P  *  P  *  L  F  T  S  P  G  G  S  F  I  L  W  M  P  S  F  P  R  S  I  T  T  L  E  S  M  Y  L  :  A  L  D  L  L  P  P  *  L  S  S  S  S  L  G  C  S  C  P  H  G  *  V  H  L  F  L  V  *  E  S  G  S  *  K  K  C  P  S  *  A  T  S  T  L  P  P  S  K  L  A  Q  Q  F  H  Q  :  I  K  L  H  M  P  S  K  K  W  P  *  *  G  I  R  V  L  V  N  M  H  L  V  L  S  L  Q  Q  S  Y  F  T  S  I  Q  V  Q  R  N  S  A  V  F  M  C  Q  L  I  T  S  I  L  E  I  S  F  L  *  I  L  K  T  L  *  G  P  I  S  L  F  E  R  V  *  :  K  L  *  S  P  G  A </second_frame>
            <third_frame>   I  H  F  W  G  R  R  R  R  E  I  Y  N  G  D  A  K  S  R  *  G  I  R  A  S  H  T  N  G  R  R  *  E  Y  *  C  *  S  L  Q  I  F  F  S  F  S  F  P  *  D  S  I  F  F  *  V  S  S  L  F  W  Q  R   : G  I  *  Q  S  Y  S  *  L  D  L  E  K  V  H  Q  R  M  :  C  H  L  I  S  H  S  H  N  F  L  H  H  L  V  V  H  S  F  C  G  C  L  L  F  P  D  L  *  P  P  W  N  Q  C  I  W :   P  W  I  C  Y  L  H  D  F  H  L  L  R  W  G  V  H  V  L  M  V  R  C  I  S  S  *  F  R  R  V  V  H  K  K  N  A  P  H  E  L  H  L  L  C  L  Q  A  N  *  L  S  N  F  T  R :   *  N  F  T  C  L  Q  R  S  G  H  N  K  A  S  A  S  W  *  I  C  I  W  F  Y  H  F  N  S  H  T  S  Q  A  F  R  C  R  G  T  L  L  C  L  C  A  N  *  S  P  L  S  W  R  Y  L  S  C  E  F  *  R  R  Y  E  A  Q  S  L  C  S  R  G  Y  R :   N  C  N  L  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66952" stop="67143"/>
                    <exon start="67431" stop="67483"/>
                    <exon start="67588" stop="67697"/>
                    <exon start="68014" stop="68181"/>
                    <exon start="68253" stop="68477"/>
                    <exon start="68570" stop="68589"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFIFGEEEGGRSIMATPRADRELELLIPMGGVENINASHSKSSSPSHSPKIPSSSRSHHSSGKEAFSKVIRSWTWKKFISGCVILFPIAITFYITWWFIHFVDAFFSPIYNHLGINVFGLGFVTSMTFIFFVGVFMSSWLGASLLSLGEWFIKKMPLMSYIYSASKQISSAISPDKTSHAFKEVAIIRHPRLGEYAFGFITSTVILHKHSGAEELCCVYVPTNHLYLGDIFLVNSKDVMRPNLSVREGIEIVISGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="69105" PGL_stop="68634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69105" e_stop="68634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="69105" e_stop="68634" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69105" stop="68634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGCAAGGAAAAATTCCTTGGTTTCATGAACTTACAAATGACCCATACCAATCTTAGATTATTTACATGCTCCTCTATAACATAATATTGTACTTGTTCTCATCCAAAAAGAAATATATGCAAGTTGTTGAGAAGAGAGGGGAAAAAATATATCAGAGGCAGCCTCCTTGTTCCAATCTGTATAGGTATGAGTTGAGCTCAGTTTCTAACTTGAGCTCATTTGACAAAATCTTGTTTGTTCAATATTGTTGTACTAAAATCAGATAAATGTACCAAAAAATCACAAAGATAAGAGGAGAAAGATTGGAGATATTTTCTTGTAAGAGCCTCTATCCATGCATTATTAACCCTCATTTCTACGTCTGTATGTCCAGTTTACTCGTCGAGCAGTATCTTTTCCTTGGTTTCTTGTTTAAATGGTTGAGTAATCAAACTTGTGGTACTGCAAATTTTCCAACTCTCGGAGATAAA</gDNA_template>
            <first_frame> L  A  R  K  N  S  L  V  S  *  T  Y  K  *  P  I  P  I  L  D  Y  L  H  A  P  L  *  H  N  I  V  L  V  L  I  Q  K  E  I  Y  A  S  C  *  E  E  R  G  K  N  I  S  E  A  A  S  L  F  Q  S  V  *  V  *  V  E  L  S  F  *  L  E  L  I  *  Q  N  L  V  C  S  I  L  L  Y  *  N  Q  I  N  V  P  K  N  H  K  D  K  R  R  K  I  G  D  I  F  L  *  E  P  L  S  M  H  Y  *  P  S  F  L  R  L  Y  V  Q  F  T  R  R  A  V  S  F  P  W  F  L  V  *  M  V  E  *  S  N  L  W  Y  C  K  F  S  N  S  R  R  *  </first_frame>
            <second_frame>  W  Q  G  K  I  P  W  F  H  E  L  T  N  D  P  Y  Q  S  *  I  I  Y  M  L  L  Y  N  I  I  L  Y  L  F  S  S  K  K  K  Y  M  Q  V  V  E  K  R  G  E  K  I  Y  Q  R  Q  P  P  C  S  N  L  Y  R  Y  E  L  S  S  V  S  N  L  S  S  F  D  K  I  L  F  V  Q  Y  C  C  T  K  I  R  *  M  Y  Q  K  I  T  K  I  R  G  E  R  L  E  I  F  S  C  K  S  L  Y  P  C  I  I  N  P  H  F  Y  V  C  M  S  S  L  L  V  E  Q  Y  L  F  L  G  F  L  F  K  W  L  S  N  Q  T  C  G  T  A  N  F  P  T  L  G  D  K </second_frame>
            <third_frame>   G  K  E  K  F  L  G  F  M  N  L  Q  M  T  H  T  N  L  R  L  F  T  C  S  S  I  T  *  Y  C  T  C  S  H  P  K  R  N  I  C  K  L  L  R  R  E  G  K  K  Y  I  R  G  S  L  L  V  P  I  C  I  G  M  S  *  A  Q  F  L  T  *  A  H  L  T  K  S  C  L  F  N  I  V  V  L  K  S  D  K  C  T  K  K  S  Q  R  *  E  E  K  D  W  R  Y  F  L  V  R  A  S  I  H  A  L  L  T  L  I  S  T  S  V  C  P  V  Y  S  S  S  S  I  F  S  L  V  S  C  L  N  G  *  V  I  K  L  V  V  L  Q  I  F  Q  L  S  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69047" stop="68838"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIYMLLYNIILYLFSSKKKYMQVVEKRGEKIYQRQPPCSNLYRYELSSVSNLSSFDKILFVQYCCTKIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68837" stop="68634"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYQKITKIRGERLEIFSCKSLYPCIINPHFYVCMSSLLVEQYLFLGFLFKWLSNQTCGTANFPTLGDK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="80286" PGL_stop="79081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80286" e_stop="80202"/>
            <exon e_start="80104" e_stop="80054"/>
            <exon e_start="79967" e_stop="79746"/>
            <exon e_start="79550" e_stop="79457"/>
            <exon e_start="79357" e_stop="79217"/>
            <exon e_start="79134" e_stop="79081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.979" e_score="0.953"/>
          <exon-intron don_prob="0.944" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.413" e_score="0.995"/>
          <exon-intron don_prob="0.843" acc_prob="0.987" e_score="0.989"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.943"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="80286" e_stop="80202" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.979">
            <gDNA_intron_boundary i_start="80201" i_stop="80105" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80104" e_stop="80054" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.916">
            <gDNA_intron_boundary i_start="80053" i_stop="79968" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="79967" e_stop="79746" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.413">
            <gDNA_intron_boundary i_start="79745" i_stop="79551" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="79550" e_stop="79457" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.843" acc_prob="0.987">
            <gDNA_intron_boundary i_start="79456" i_stop="79358" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="0.943">
            <gDNA_exon_boundary e_start="79357" e_stop="79217" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79216" i_stop="79135" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.778">
            <gDNA_exon_boundary e_start="79134" e_stop="79081" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80286" stop="80202"/>
              <exon start="80104" stop="80054"/>
              <exon start="79967" stop="79746"/>
              <exon start="79550" stop="79457"/>
              <exon start="79357" stop="79217"/>
              <exon start="79134" stop="79081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCATGCTTCGCAACGTTTACTGGAAAGAATTGGGACTTCTAATGTTTGTTTGGGTGGCTTTCCTTGCTATTCAAGTTGTCAAG : ACCTACACCGTGACATGCTCCATCGGGTACTGGATTTTAAATTTATTGCAG : GTACCTGTTGCTGTTTCGGTTTCGTTGTATGAAGCAGTATGTCTGTACAAGGGGACAAGGGTGATTGCATCAAAAGGAAAGGAGATAACAAACTGGAAGCCACATCTACTCTTCTTTTACTGTTGTTGTGGCATAGTTGCTGGTATTGTTGGCGGATTGCTTGGTCTCGGAGGTGGCTTCATCCTTGGACCACTGTTTCTAGAACTTGGAATTCCTCCTCAG : GTAGCAAGTGCAACATCAACCTTTTCAATGACTTTCTCATCCTCTATGTCAGTTGTGCAATATTACCTATTGAAGCGTTTCCCTGTCCCATACG : CTACTTATTTCGTTTCAATAGCAACAATTGCTGCAGTAGTTGGTCAACACGTTATAAGAAGAGTAATTGCACTGCTTGGAAGAGCCTCTATAATCATATTCATACTGGCCATGACAATATTTACCAGTGCAATCAGCTTAG : GTGGTGTGGGGATAGCAAATATGATAGAGAAGCTGAAGAACAATGACTATATGG</gDNA_template>
            <first_frame> S  H  A  S  Q  R  L  L  E  R  I  G  T  S  N  V  C  L  G  G  F  P  C  Y  S  S  C  Q   : D  L  H  R  D  M  L  H  R  V  L  D  F  K  F  I  A   : G  T  C  C  C  F  G  F  V  V  *  S  S  M  S  V  Q  G  D  K  G  D  C  I  K  R  K  G  D  N  K  L  E  A  T  S  T  L  L  L  L  L  L  W  H  S  C  W  Y  C  W  R  I  A  W  S  R  R  W  L  H  P  W  T  T  V  S  R  T  W  N  S  S  S   : G  S  K  C  N  I  N  L  F  N  D  F  L  I  L  Y  V  S  C  A  I  L  P  I  E  A  F  P  C  P  I  R :   Y  L  F  R  F  N  S  N  N  C  C  S  S  W  S  T  R  Y  K  K  S  N  C  T  A  W  K  S  L  Y  N  H  I  H  T  G  H  D  N  I  Y  Q  C  N  Q  L  R :   W  C  G  D  S  K  Y  D  R  E  A  E  E  Q  *  L  Y   </first_frame>
            <second_frame>  P  M  L  R  N  V  Y  W  K  E  L  G  L  L  M  F  V  W  V  A  F  L  A  I  Q  V  V  K  :  T  Y  T  V  T  C  S  I  G  Y  W  I  L  N  L  L  Q  :  V  P  V  A  V  S  V  S  L  Y  E  A  V  C  L  Y  K  G  T  R  V  I  A  S  K  G  K  E  I  T  N  W  K  P  H  L  L  F  F  Y  C  C  C  G  I  V  A  G  I  V  G  G  L  L  G  L  G  G  G  F  I  L  G  P  L  F  L  E  L  G  I  P  P  Q  :  V  A  S  A  T  S  T  F  S  M  T  F  S  S  S  M  S  V  V  Q  Y  Y  L  L  K  R  F  P  V  P  Y   : A  T  Y  F  V  S  I  A  T  I  A  A  V  V  G  Q  H  V  I  R  R  V  I  A  L  L  G  R  A  S  I  I  I  F  I  L  A  M  T  I  F  T  S  A  I  S  L   : G  G  V  G  I  A  N  M  I  E  K  L  K  N  N  D  Y  M  </second_frame>
            <third_frame>   P  C  F  A  T  F  T  G  K  N  W  D  F  *  C  L  F  G  W  L  S  L  L  F  K  L  S  R :   P  T  P  *  H  A  P  S  G  T  G  F  *  I  Y  C  R :   Y  L  L  L  F  R  F  R  C  M  K  Q  Y  V  C  T  R  G  Q  G  *  L  H  Q  K  E  R  R  *  Q  T  G  S  H  I  Y  S  S  F  T  V  V  V  A  *  L  L  V  L  L  A  D  C  L  V  S  E  V  A  S  S  L  D  H  C  F  *  N  L  E  F  L  L  R :   *  Q  V  Q  H  Q  P  F  Q  *  L  S  H  P  L  C  Q  L  C  N  I  T  Y  *  S  V  S  L  S  H  T  :  L  L  I  S  F  Q  *  Q  Q  L  L  Q  *  L  V  N  T  L  *  E  E  *  L  H  C  L  E  E  P  L  *  S  Y  S  Y  W  P  *  Q  Y  L  P  V  Q  S  A  *  :  V  V  W  G  *  Q  I  *  *  R  S  *  R  T  M  T  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80285" stop="80202"/>
                    <exon start="80104" stop="80054"/>
                    <exon start="79967" stop="79746"/>
                    <exon start="79550" stop="79457"/>
                    <exon start="79357" stop="79217"/>
                    <exon start="79134" stop="79082"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMLRNVYWKELGLLMFVWVAFLAIQVVKTYTVTCSIGYWILNLLQVPVAVSVSLYEAVCLYKGTRVIASKGKEITNWKPHLLFFYCCCGIVAGIVGGLLGLGGGFILGPLFLELGIPPQVASATSTFSMTFSSSMSVVQYYLLKRFPVPYATYFVSIATIAAVVGQHVIRRVIALLGRASIIIFILAMTIFTSAISLGGVGIANMIEKLKNNDYM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="81953" PGL_stop="80981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81953" e_stop="81534"/>
            <exon e_start="81347" e_stop="81188"/>
            <exon e_start="81103" e_stop="80981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81953" e_stop="81534" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="81533" i_stop="81348" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81347" e_stop="81188" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.908" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81187" i_stop="81104" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81103" e_stop="80981" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81953" stop="81534"/>
              <exon start="81347" stop="81188"/>
              <exon start="81103" stop="80981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGATATTCAAGCATACAAATTAAAAGTTTGTTTCTGCTCTTTTAATTCCCCTCAGGTTCTTCAAAGTGGAATATATATAGAAGTAGCCAATTTATTACCTCAGAGGAAGCTACTTCTATATATATTTCTTAATTAAGGCTATTTGAGTTGAACTTTTTATGATGGCTAATGAAGAGATAAAAAAGAGAATGAAGGCGTTTTTCGTATCAGCAGTATGGATACTATGCTGGGGATTATTCATAATAAGCGAAGCTGGGATTAATGCAGAAAGGCTTACTCTGAAGGATAAATTAGAGCCAGCTGCTACTTATAACATTAGTTATGTAGAGAATAATGAGATGAGACCACAAACCTTTGCAGTAAGGCTTGTGCATTTTCTGTGGAGTGGAAAGTCCTCTTATGAGCACGTTTGGCCG : GAGATGGAGTTTGGATGGAGAGTAATTGTTGGATCCATTGTGGGATTCTTTGGTGCTGCTTTGGGAAGCGTTGGAGGGGTTGGCGGCGGTGGAATTTTTGTTCCAATGCTAACTCTTATTATTGGCTTTGATCCAAAATCATCTACAGCTATATCCAAGT : GCATGATAATGGGAGCAGCTGGATCAACAGTGTACTACAACATGAGGCTGAGGCACCCAACTCTAGATATGCCTATAATTGACTATGATTTGGCTTTGCTCTTACAACCTATGCTCATGCTTG</gDNA_template>
            <first_frame> E  R  I  F  K  H  T  N  *  K  F  V  S  A  L  L  I  P  L  R  F  F  K  V  E  Y  I  *  K  *  P  I  Y  Y  L  R  G  S  Y  F  Y  I  Y  F  L  I  K  A  I  *  V  E  L  F  M  M  A  N  E  E  I  K  K  R  M  K  A  F  F  V  S  A  V  W  I  L  C  W  G  L  F  I  I  S  E  A  G  I  N  A  E  R  L  T  L  K  D  K  L  E  P  A  A  T  Y  N  I  S  Y  V  E  N  N  E  M  R  P  Q  T  F  A  V  R  L  V  H  F  L  W  S  G  K  S  S  Y  E  H  V  W  P  :  E  M  E  F  G  W  R  V  I  V  G  S  I  V  G  F  F  G  A  A  L  G  S  V  G  G  V  G  G  G  G  I  F  V  P  M  L  T  L  I  I  G  F  D  P  K  S  S  T  A  I  S  K   : C  M  I  M  G  A  A  G  S  T  V  Y  Y  N  M  R  L  R  H  P  T  L  D  M  P  I  I  D  Y  D  L  A  L  L  L  Q  P  M  L  M  L  </first_frame>
            <second_frame>  K  G  Y  S  S  I  Q  I  K  S  L  F  L  L  F  *  F  P  S  G  S  S  K  W  N  I  Y  R  S  S  Q  F  I  T  S  E  E  A  T  S  I  Y  I  S  *  L  R  L  F  E  L  N  F  L  *  W  L  M  K  R  *  K  R  E  *  R  R  F  S  Y  Q  Q  Y  G  Y  Y  A  G  D  Y  S  *  *  A  K  L  G  L  M  Q  K  G  L  L  *  R  I  N  *  S  Q  L  L  L  I  T  L  V  M  *  R  I  M  R  *  D  H  K  P  L  Q  *  G  L  C  I  F  C  G  V  E  S  P  L  M  S  T  F  G  R :   R  W  S  L  D  G  E  *  L  L  D  P  L  W  D  S  L  V  L  L  W  E  A  L  E  G  L  A  A  V  E  F  L  F  Q  C  *  L  L  L  L  A  L  I  Q  N  H  L  Q  L  Y  P  S  :  A  *  *  W  E  Q  L  D  Q  Q  C  T  T  T  *  G  *  G  T  Q  L  *  I  C  L  *  L  T  M  I  W  L  C  S  Y  N  L  C  S  C  L </second_frame>
            <third_frame>   K  D  I  Q  A  Y  K  L  K  V  C  F  C  S  F  N  S  P  Q  V  L  Q  S  G  I  Y  I  E  V  A  N  L  L  P  Q  R  K  L  L  L  Y  I  F  L  N  *  G  Y  L  S  *  T  F  Y  D  G  *  *  R  D  K  K  E  N  E  G  V  F  R  I  S  S  M  D  T  M  L  G  I  I  H  N  K  R  S  W  D  *  C  R  K  A  Y  S  E  G  *  I  R  A  S  C  Y  L  *  H  *  L  C  R  E  *  *  D  E  T  T  N  L  C  S  K  A  C  A  F  S  V  E  W  K  V  L  L  *  A  R  L  A   : G  D  G  V  W  M  E  S  N  C  W  I  H  C  G  I  L  W  C  C  F  G  K  R  W  R  G  W  R  R  W  N  F  C  S  N  A  N  S  Y  Y  W  L  *  S  K  I  I  Y  S  Y  I  Q  V :   H  D  N  G  S  S  W  I  N  S  V  L  Q  H  E  A  E  A  P  N  S  R  Y  A  Y  N  *  L  *  F  G  F  A  L  T  T  Y  A  H  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81803" stop="81534"/>
                    <exon start="81347" stop="81188"/>
                    <exon start="81103" stop="80982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VELFMMANEEIKKRMKAFFVSAVWILCWGLFIISEAGINAERLTLKDKLEPAATYNISYVENNEMRPQTFAVRLVHFLWSGKSSYEHVWPEMEFGWRVIVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSSTAISKCMIMGAAGSTVYYNMRLRHPTLDMPIIDYDLALLLQPMLML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="86138" PGL_stop="86269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86138" e_stop="86269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="86138" e_stop="86269" e_length="132"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86138" stop="86269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACATAACAAACACATTACCGCGCACACATCCCCAATAAATTCGCATTTAACAAGTCACATTAGAACTCAGCAAGTAATTTACCAAACAATTCCAAAAGAAGATACAAAATTCAAAACATGGGCTGATGCGC</gDNA_template>
            <first_frame> H  I  T  N  T  L  P  R  T  H  P  Q  *  I  R  I  *  Q  V  T  L  E  L  S  K  *  F  T  K  Q  F  Q  K  K  I  Q  N  S  K  H  G  L  M  R </first_frame>
            <second_frame>  T  *  Q  T  H  Y  R  A  H  I  P  N  K  F  A  F  N  K  S  H  *  N  S  A  S  N  L  P  N  N  S  K  R  R  Y  K  I  Q  N  M  G  *  C   </second_frame>
            <third_frame>   H  N  K  H  I  T  A  H  T  S  P  I  N  S  H  L  T  S  H  I  R  T  Q  Q  V  I  Y  Q  T  I  P  K  E  D  T  K  F  K  T  W  A  D  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0128E12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="87916" PGL_stop="86536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87916" e_stop="87834"/>
            <exon e_start="87389" e_stop="87321"/>
            <exon e_start="87136" e_stop="86964"/>
            <exon e_start="86828" e_stop="86536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.993" e_score="0.940"/>
          <exon-intron don_prob="0.995" acc_prob="0.986" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="87916" e_stop="87834" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87833" i_stop="87390" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="87389" e_stop="87321" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87320" i_stop="87137" i_length="184"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87136" e_stop="86964" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86963" i_stop="86829" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86828" e_stop="86536" e_length="293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87834"/>
              <exon start="87389" stop="87321"/>
              <exon start="87136" stop="86964"/>
              <exon start="86828" stop="86536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTAGAACAGTCCCCAATTGGCGTCCCCGCAGACTTGGTGGTGGACTTGGAACAACAAGAGTTGGAAATGAAGATGCTACTAG : AGAGGTGGTTCAGCCTGGAAGGGCAGCATCTCGCTCTGAGGAGCCAAGAGCACGAGATGACAGGGATAG : GGATCGGGAGAAGTCCCGTGAAAGGGTGCGAGATAAGGACAGAGAGAAATCTCGTGAGCGTTCTCATGACAGGCCAAGGGAACGTGAAAGAGATGACAAACATCATAGGGAACGCGAGAGAACCAGAGAAAGAGAAAAAGATCGTGGTCGTGACCGTGATCGAGACCGCGAAC : GTGATAGAGAATATGATTATGAGCATGTTGATTCAAAACACGAGCGAGACCGACACGGTGACAAAGAGAGGAATTATGATCCTGCAGAACCTGAAGATGATCATGGACATTATGACTATTATGATCACCACCAAGGTCGAGGAGATTATGAGAATCCAGATGCACAAGGTGGGGATGATCGCTATAAAGATGCCAGTCGTGGTCATGATCGTTATGATCAAATGGAAGAGGATAATTATGCTTATGACCACGGGGCATCTGAGACAAAAGAAAGGGATCGGGATTACAAGCGT</gDNA_template>
            <first_frame> G  R  T  V  P  N  W  R  P  R  R  L  G  G  G  L  G  T  T  R  V  G  N  E  D  A  T  R :   E  V  V  Q  P  G  R  A  A  S  R  S  E  E  P  R  A  R  D  D  R  D  R :   D  R  E  K  S  R  E  R  V  R  D  K  D  R  E  K  S  R  E  R  S  H  D  R  P  R  E  R  E  R  D  D  K  H  H  R  E  R  E  R  T  R  E  R  E  K  D  R  G  R  D  R  D  R  D  R  E   : R  D  R  E  Y  D  Y  E  H  V  D  S  K  H  E  R  D  R  H  G  D  K  E  R  N  Y  D  P  A  E  P  E  D  D  H  G  H  Y  D  Y  Y  D  H  H  Q  G  R  G  D  Y  E  N  P  D  A  Q  G  G  D  D  R  Y  K  D  A  S  R  G  H  D  R  Y  D  Q  M  E  E  D  N  Y  A  Y  D  H  G  A  S  E  T  K  E  R  D  R  D  Y  K  R </first_frame>
            <second_frame>  V  E  Q  S  P  I  G  V  P  A  D  L  V  V  D  L  E  Q  Q  E  L  E  M  K  M  L  L   : E  R  W  F  S  L  E  G  Q  H  L  A  L  R  S  Q  E  H  E  M  T  G  I   : G  I  G  R  S  P  V  K  G  C  E  I  R  T  E  R  N  L  V  S  V  L  M  T  G  Q  G  N  V  K  E  M  T  N  I  I  G  N  A  R  E  P  E  K  E  K  K  I  V  V  V  T  V  I  E  T  A  N  :  V  I  E  N  M  I  M  S  M  L  I  Q  N  T  S  E  T  D  T  V  T  K  R  G  I  M  I  L  Q  N  L  K  M  I  M  D  I  M  T  I  M  I  T  T  K  V  E  E  I  M  R  I  Q  M  H  K  V  G  M  I  A  I  K  M  P  V  V  V  M  I  V  M  I  K  W  K  R  I  I  M  L  M  T  T  G  H  L  R  Q  K  K  G  I  G  I  T  S   </second_frame>
            <third_frame>   *  N  S  P  Q  L  A  S  P  Q  T  W  W  W  T  W  N  N  K  S  W  K  *  R  C  Y  *  :  R  G  G  S  A  W  K  G  S  I  S  L  *  G  A  K  S  T  R  *  Q  G  *  :  G  S  G  E  V  P  *  K  G  A  R  *  G  Q  R  E  I  S  *  A  F  S  *  Q  A  K  G  T  *  K  R  *  Q  T  S  *  G  T  R  E  N  Q  R  K  R  K  R  S  W  S  *  P  *  S  R  P  R  T :   *  *  R  I  *  L  *  A  C  *  F  K  T  R  A  R  P  T  R  *  Q  R  E  E  L  *  S  C  R  T  *  R  *  S  W  T  L  *  L  L  *  S  P  P  R  S  R  R  L  *  E  S  R  C  T  R  W  G  *  S  L  *  R  C  Q  S  W  S  *  S  L  *  S  N  G  R  G  *  L  C  L  *  P  R  G  I  *  D  K  R  K  G  S  G  L  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87916" stop="87834"/>
                    <exon start="87389" stop="87321"/>
                    <exon start="87136" stop="86964"/>
                    <exon start="86828" stop="86536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRTVPNWRPRRLGGGLGTTRVGNEDATREVVQPGRAASRSEEPRARDDRDRDREKSRERVRDKDREKSRERSHDRPRERERDDKHHRERERTREREKDRGRDRDRDRERDREYDYEHVDSKHERDRHGDKERNYDPAEPEDDHGHYDYYDHHQGRGDYENPDAQGGDDRYKDASRGHDRYDQMEEDNYAYDHGASETKERDRDYKR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87915" stop="87834"/>
                    <exon start="87389" stop="87321"/>
                    <exon start="87136" stop="86964"/>
                    <exon start="86828" stop="86538"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEQSPIGVPADLVVDLEQQELEMKMLLERWFSLEGQHLALRSQEHEMTGIGIGRSPVKGCEIRTERNLVSVLMTGQGNVKEMTNIIGNAREPEKEKKIVVVTVIETANVIENMIMSMLIQNTSETDTVTKRGIMILQNLKMIMDIMTIMITTKVEEIMRIQMHKVGMIAIKMPVVVMIVMIKWKRIIMLMTTGHLRQKKGIGITS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="91957" PGL_stop="87956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91957" e_stop="91787"/>
            <exon e_start="91010" e_stop="90896"/>
            <exon e_start="90809" e_stop="90730"/>
            <exon e_start="90010" e_stop="89935"/>
            <exon e_start="89854" e_stop="89790"/>
            <exon e_start="89675" e_stop="89613"/>
            <exon e_start="88137" e_stop="88056"/>
            <exon e_start="87981" e_stop="87956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.768" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.606" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.943" e_score="0.976"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="91957" e_stop="91787" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="91786" i_stop="91011" i_length="776"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91010" e_stop="90896" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.768" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90895" i_stop="90810" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90809" e_stop="90730" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90729" i_stop="90011" i_length="719"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90010" e_stop="89935" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.606" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89934" i_stop="89855" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89854" e_stop="89790" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.996">
            <gDNA_intron_boundary i_start="89789" i_stop="89676" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89675" e_stop="89613" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.962">
            <gDNA_intron_boundary i_start="89612" i_stop="88138" i_length="1475"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="88137" e_stop="88056" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.719" acc_prob="0.943">
            <gDNA_intron_boundary i_start="88055" i_stop="87982" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="87981" e_stop="87956" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91957" stop="91787"/>
              <exon start="91010" stop="90896"/>
              <exon start="90809" stop="90730"/>
              <exon start="90010" stop="89935"/>
              <exon start="89854" stop="89790"/>
              <exon start="89675" stop="89613"/>
              <exon start="88137" stop="88056"/>
              <exon start="87981" stop="87956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574992" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATCGTCCGATTAACGTAACTCCACTTCTTGTGGCGGCGATTCGCATCTAGCAAAAACCCTAGTCGGCTTCAATGGGAGACTTCAACGATGCCTTCATGCGGAACAACCCTAACGTTCAGGCCCGTGCAAAGGCCCAGAATCGCGCTAATGTCATGCAACTCAAGCTG : ATTGGTCAAAGTCATCCAACTGGGTTGACTGCTAATCTTCTGAAGTTGTTTGAGCCCCGACCACCTTTGGAGTACAAACCACCCCCTGAGAAGAGAAAATGCCCTTCATATACTG : GGATGGCACAATTTGTTAGTAACTTCGCTCAACCTGGTGATCCAGAATATGCTCCACCAATCCCTGAGGTTGAAACCCCG : ACTGAACGAAGAGCTAGGATCCACAAGATACGGCTGGAGGAGGGTGCTAAAAAGGCTGCTGAGGAGCTTGAAAAAT : ATGATCCTAGCAGCGACCCAAATGCTACCGGGGATCCATACAAGACACTATTTGTTGCAAGACTT : AATTATGAGACAACAGAAAGCAGAGTCAAACGCGAATTTGAGGCTTATGGTCCAATCAAGCGG : GTTCGCTTGGTTATGGACAAGACAAACAATAAACCCAGGGGTTATGCTTTCATTGAGTATGTGCATACACGGGATATGAAAG : CTGCGTATAAACAAGCTGATGGAAAG</gDNA_template>
            <first_frame> S  N  R  P  I  N  V  T  P  L  L  V  A  A  I  R  I  *  Q  K  P  *  S  A  S  M  G  D  F  N  D  A  F  M  R  N  N  P  N  V  Q  A  R  A  K  A  Q  N  R  A  N  V  M  Q  L  K  L  :  I  G  Q  S  H  P  T  G  L  T  A  N  L  L  K  L  F  E  P  R  P  P  L  E  Y  K  P  P  P  E  K  R  K  C  P  S  Y  T   : G  M  A  Q  F  V  S  N  F  A  Q  P  G  D  P  E  Y  A  P  P  I  P  E  V  E  T  P  :  T  E  R  R  A  R  I  H  K  I  R  L  E  E  G  A  K  K  A  A  E  E  L  E  K   : Y  D  P  S  S  D  P  N  A  T  G  D  P  Y  K  T  L  F  V  A  R  L  :  N  Y  E  T  T  E  S  R  V  K  R  E  F  E  A  Y  G  P  I  K  R  :  V  R  L  V  M  D  K  T  N  N  K  P  R  G  Y  A  F  I  E  Y  V  H  T  R  D  M  K   : A  A  Y  K  Q  A  D  G  K </first_frame>
            <second_frame>  P  I  V  R  L  T  *  L  H  F  L  W  R  R  F  A  S  S  K  N  P  S  R  L  Q  W  E  T  S  T  M  P  S  C  G  T  T  L  T  F  R  P  V  Q  R  P  R  I  A  L  M  S  C  N  S  S  * :   L  V  K  V  I  Q  L  G  *  L  L  I  F  *  S  C  L  S  P  D  H  L  W  S  T  N  H  P  L  R  R  E  N  A  L  H  I  L  :  G  W  H  N  L  L  V  T  S  L  N  L  V  I  Q  N  M  L  H  Q  S  L  R  L  K  P  R :   L  N  E  E  L  G  S  T  R  Y  G  W  R  R  V  L  K  R  L  L  R  S  L  K  N  :  M  I  L  A  A  T  Q  M  L  P  G  I  H  T  R  H  Y  L  L  Q  D  L :   I  M  R  Q  Q  K  A  E  S  N  A  N  L  R  L  M  V  Q  S  S  G :   F  A  W  L  W  T  R  Q  T  I  N  P  G  V  M  L  S  L  S  M  C  I  H  G  I  *  K  :  L  R  I  N  K  L  M  E   </second_frame>
            <third_frame>   Q  S  S  D  *  R  N  S  T  S  C  G  G  D  S  H  L  A  K  T  L  V  G  F  N  G  R  L  Q  R  C  L  H  A  E  Q  P  *  R  S  G  P  C  K  G  P  E  S  R  *  C  H  A  T  Q  A   : D  W  S  K  S  S  N  W  V  D  C  *  S  S  E  V  V  *  A  P  T  T  F  G  V  Q  T  T  P  *  E  E  K  M  P  F  I  Y  W :   D  G  T  I  C  *  *  L  R  S  T  W  *  S  R  I  C  S  T  N  P  *  G  *  N  P   : D  *  T  K  S  *  D  P  Q  D  T  A  G  G  G  C  *  K  G  C  *  G  A  *  K  I :   *  S  *  Q  R  P  K  C  Y  R  G  S  I  Q  D  T  I  C  C  K  T   : *  L  *  D  N  R  K  Q  S  Q  T  R  I  *  G  L  W  S  N  Q  A   : G  S  L  G  Y  G  Q  D  K  Q  *  T  Q  G  L  C  F  H  *  V  C  A  Y  T  G  Y  E  S :   C  V  *  T  S  *  W  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91891" stop="91787"/>
                    <exon start="91010" stop="90896"/>
                    <exon start="90809" stop="90730"/>
                    <exon start="90010" stop="89935"/>
                    <exon start="89854" stop="89790"/>
                    <exon start="89675" stop="89613"/>
                    <exon start="88137" stop="88056"/>
                    <exon start="87981" stop="87956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SASMGDFNDAFMRNNPNVQARAKAQNRANVMQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPSYTGMAQFVSNFAQPGDPEYAPPIPEVETPTERRARIHKIRLEEGAKKAAEELEKYDPSSDPNATGDPYKTLFVARLNYETTESRVKREFEAYGPIKRVRLVMDKTNNKPRGYAFIEYVHTRDMKAAYKQADGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="96592" PGL_stop="96005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96592" e_stop="96581"/>
            <exon e_start="96474" e_stop="96005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96592" e_stop="96581" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="96580" i_stop="96475" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="96474" e_stop="96005" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96592" stop="96581"/>
              <exon start="96474" stop="96005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACATCTTTCAG : GAGCATTGAAGATTTGTTGAGACGAGCAGCTAACGGGAGAGGTTGAATTTCTGGGCTGCCGGAAATTTCACCGTTGTTGAAATATGCAATCACCTCCTAGTACTGCTTCGTCCGACAAAGATGAGACTACTTCCTCTTCTCCTTCTAATTCCTCCCCGTCTCCCCCACCACCAGCTCCGCCTACCTCCCCACCCCCAGAATCTCCTCCACCTGTAAATTCTCCGCCACCGTCAAAGGAATCTTCTCCTCCGTCATCACCACCACCCTCAGCTTCTGAATCACCACCACCTCCGTCAGATTCCACTACCACGTCACTCAATGCTCCTGAGGCGTCTCCTCCTACCTCATCCAAATTTAATCCTCCACCACCAGTTTCCTCAGGATCACCTTCATTATCTGCTGGAAAATTATCTCCTCCTCCACCTTCAGAAAAATCAGCACCTTTTGAAAAACCAGACGGTGCACAACAT</gDNA_template>
            <first_frame> Y  I  F  Q  :  E  H  *  R  F  V  E  T  S  S  *  R  E  R  L  N  F  W  A  A  G  N  F  T  V  V  E  I  C  N  H  L  L  V  L  L  R  P  T  K  M  R  L  L  P  L  L  L  L  I  P  P  R  L  P  H  H  Q  L  R  L  P  P  H  P  Q  N  L  L  H  L  *  I  L  R  H  R  Q  R  N  L  L  L  R  H  H  H  H  P  Q  L  L  N  H  H  H  L  R  Q  I  P  L  P  R  H  S  M  L  L  R  R  L  L  L  P  H  P  N  L  I  L  H  H  Q  F  P  Q  D  H  L  H  Y  L  L  E  N  Y  L  L  L  H  L  Q  K  N  Q  H  L  L  K  N  Q  T  V  H  N   </first_frame>
            <second_frame>  T  S  F  R :   S  I  E  D  L  L  R  R  A  A  N  G  R  G  *  I  S  G  L  P  E  I  S  P  L  L  K  Y  A  I  T  S  *  Y  C  F  V  R  Q  R  *  D  Y  F  L  F  S  F  *  F  L  P  V  S  P  T  T  S  S  A  Y  L  P  T  P  R  I  S  S  T  C  K  F  S  A  T  V  K  G  I  F  S  S  V  I  T  T  T  L  S  F  *  I  T  T  T  S  V  R  F  H  Y  H  V  T  Q  C  S  *  G  V  S  S  Y  L  I  Q  I  *  S  S  T  T  S  F  L  R  I  T  F  I  I  C  W  K  I  I  S  S  S  T  F  R  K  I  S  T  F  *  K  T  R  R  C  T  T  </second_frame>
            <third_frame>   H  L  S   : G  A  L  K  I  C  *  D  E  Q  L  T  G  E  V  E  F  L  G  C  R  K  F  H  R  C  *  N  M  Q  S  P  P  S  T  A  S  S  D  K  D  E  T  T  S  S  S  P  S  N  S  S  P  S  P  P  P  P  A  P  P  T  S  P  P  P  E  S  P  P  P  V  N  S  P  P  P  S  K  E  S  S  P  P  S  S  P  P  P  S  A  S  E  S  P  P  P  P  S  D  S  T  T  T  S  L  N  A  P  E  A  S  P  P  T  S  S  K  F  N  P  P  P  P  V  S  S  G  S  P  S  L  S  A  G  K  L  S  P  P  P  P  S  E  K  S  A  P  F  E  K  P  D  G  A  Q  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96394" stop="96005"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMQSPPSTASSDKDETTSSSPSNSSPSPPPPAPPTSPPPESPPPVNSPPPSKESSPPSSPPPSASESPPPPSDSTTTSLNAPEASPPTSSKFNPPPPVSSGSPSLSAGKLSPPPPSEKSAPFEKPDGAQH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="97075" PGL_stop="97775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97075" e_stop="97775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97075" e_stop="97775" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTCCAAACTGTAAGTATTATCGTCAAAAGAGAACCTGACTATACAATTCCAACAGTTTGCACTTGTTTAGAACCAAAACTGAAAACTAGCAGCAAGAAAGTAAAATGACTGGAGGACAAAAACAAATCATACTACTAGCCCAAATGAAACAATCATCAAGGGCACTACTTCATATTCTCCAGATCCTTGTAACATAACGAGGCAGCTTATGTAGGCTGAGAACCTCTCATCAGTATTCGTCCCAGACTCCACACTGTTCTGCTCCCTTGGGTTATTCTCCAGCATTGTGTACCATAACAAGGCTGTTTATGTAGGGTAAGAACCTCTTATCAGTATCCACTCGTCCCGGACTCTGCAGTGTCTCAACCTTCTGGTCCCTAAGGTGATAAAAGTATATTGTTGTGTCCGTGTGGATCACCACAGTATCACTGACAGTACAAGGTAGTACCTCACAACACTTCTCATTGGGTATTCCAAGCACTTGAGTACGAGGCTTCTTGCTACCAAGATTTACACTGACACTGCGCTTCAGGCCCATGTCTACACCTCCATAGATGTCTATTATGAAAACACTTCCACAGTCATTATAAGCAGTAACATAGCAAACCTCATCTCCTATCTGCGTCAAGGCACCACGTTGTCCAGATTGAAGAACAGGTAAATGTAGAACTGCTGGAATCTCATTTTTCACATCGAATG</gDNA_template>
            <first_frame> S  S  K  L  *  V  L  S  S  K  E  N  L  T  I  Q  F  Q  Q  F  A  L  V  *  N  Q  N  *  K  L  A  A  R  K  *  N  D  W  R  T  K  T  N  H  T  T  S  P  N  E  T  I  I  K  G  T  T  S  Y  S  P  D  P  C  N  I  T  R  Q  L  M  *  A  E  N  L  S  S  V  F  V  P  D  S  T  L  F  C  S  L  G  L  F  S  S  I  V  Y  H  N  K  A  V  Y  V  G  *  E  P  L  I  S  I  H  S  S  R  T  L  Q  C  L  N  L  L  V  P  K  V  I  K  V  Y  C  C  V  R  V  D  H  H  S  I  T  D  S  T  R  *  Y  L  T  T  L  L  I  G  Y  S  K  H  L  S  T  R  L  L  A  T  K  I  Y  T  D  T  A  L  Q  A  H  V  Y  T  S  I  D  V  Y  Y  E  N  T  S  T  V  I  I  S  S  N  I  A  N  L  I  S  Y  L  R  Q  G  T  T  L  S  R  L  K  N  R  *  M  *  N  C  W  N  L  I  F  H  I  E   </first_frame>
            <second_frame>  V  P  N  C  K  Y  Y  R  Q  K  R  T  *  L  Y  N  S  N  S  L  H  L  F  R  T  K  T  E  N  *  Q  Q  E  S  K  M  T  G  G  Q  K  Q  I  I  L  L  A  Q  M  K  Q  S  S  R  A  L  L  H  I  L  Q  I  L  V  T  *  R  G  S  L  C  R  L  R  T  S  H  Q  Y  S  S  Q  T  P  H  C  S  A  P  L  G  Y  S  P  A  L  C  T  I  T  R  L  F  M  *  G  K  N  L  L  S  V  S  T  R  P  G  L  C  S  V  S  T  F  W  S  L  R  *  *  K  Y  I  V  V  S  V  W  I  T  T  V  S  L  T  V  Q  G  S  T  S  Q  H  F  S  L  G  I  P  S  T  *  V  R  G  F  L  L  P  R  F  T  L  T  L  R  F  R  P  M  S  T  P  P  *  M  S  I  M  K  T  L  P  Q  S  L  *  A  V  T  *  Q  T  S  S  P  I  C  V  K  A  P  R  C  P  D  *  R  T  G  K  C  R  T  A  G  I  S  F  F  T  S  N  </second_frame>
            <third_frame>   F  Q  T  V  S  I  I  V  K  R  E  P  D  Y  T  I  P  T  V  C  T  C  L  E  P  K  L  K  T  S  S  K  K  V  K  *  L  E  D  K  N  K  S  Y  Y  *  P  K  *  N  N  H  Q  G  H  Y  F  I  F  S  R  S  L  *  H  N  E  A  A  Y  V  G  *  E  P  L  I  S  I  R  P  R  L  H  T  V  L  L  P  W  V  I  L  Q  H  C  V  P  *  Q  G  C  L  C  R  V  R  T  S  Y  Q  Y  P  L  V  P  D  S  A  V  S  Q  P  S  G  P  *  G  D  K  S  I  L  L  C  P  C  G  S  P  Q  Y  H  *  Q  Y  K  V  V  P  H  N  T  S  H  W  V  F  Q  A  L  E  Y  E  A  S  C  Y  Q  D  L  H  *  H  C  A  S  G  P  C  L  H  L  H  R  C  L  L  *  K  H  F  H  S  H  Y  K  Q  *  H  S  K  P  H  L  L  S  A  S  R  H  H  V  V  Q  I  E  E  Q  V  N  V  E  L  L  E  S  H  F  S  H  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97522" stop="97737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLTTLLIGYSKHLSTRLLATKIYTDTALQAHVYTSIDVYYENTSTVIISSNIANLISYLRQGTTLSRLKNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="99944" PGL_stop="97785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99944" e_stop="99851"/>
            <exon e_start="99509" e_stop="99459"/>
            <exon e_start="99367" e_stop="99250"/>
            <exon e_start="98499" e_stop="97785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.990" e_score="0.968"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="99944" e_stop="99851" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.990">
            <gDNA_intron_boundary i_start="99850" i_stop="99510" i_length="341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99509" e_stop="99459" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99458" i_stop="99368" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99367" e_stop="99250" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99249" i_stop="98500" i_length="750"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98499" e_stop="97785" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99944" stop="99851"/>
              <exon start="99509" stop="99459"/>
              <exon start="99367" stop="99250"/>
              <exon start="98499" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCGTCGTCGTTAGGGTTTTCCGGCGATTCTTTGCCATTCTTTCTTGGTTTTCCGGCGACTTTACTCACCAGAATTTTAGCGCATTGCACTTT : TACAGTGAAATTTCTTGAAACCCAAGTTATCATCAAGGGCTCTGCTGATAG : AAAAATGGCATGTTCTGGGATTGACATGCTGAATGATGAATCTTTGGAGGAGGACATGTATTCTGACTCCTCTGAGTTTTACGTTGCTGTTAAACCTCAGGGTGGTGGGATTGACTCG : TTAGCAGAGTTTGACTTGAGAACTGCTGCTTATAAGGTGGAGGAAGGGAACAATGGTTCTAAATATCCTGTCGAAATCATAATGAGAGTGAACATGACGATCAAAGATGTAGCGAAGAGACATATACTGCCTTTCCTCCCCGCTAAATCACTGATGAAGCTTCGGGCAGTCTCCAAAGAATGGAATCAGTGGATAGCTAGTCCATTACTTGCGTACAATCAAAGTTCAACATTTCAGAAGCTTTCAGGCTACTTTTATCAAAGACTGGATAATGTAGATGATCCTCCTATACTTTTGTCTCTGCATCGTTCTGCAATTGGAGTCCCGAGTCCTTCACTTCGTTTCTTGCCTGTGAAGGTTAAAGTACTAAGTTCTAGCAGCGGGTTGCTCCTTTGTCAAGGGAAGGACAGCTATTATGTTTGCAATCCTGCAACCAAAGACTGGAAAAAGCTTCCTCCTCCTCAATATTACCACGGATCTGATCCTGCTGTTGCTCTTGCATTTGATCCTCAGTTCAATATTGAATCATTTTATCGTGTGGTCGCTGCAGTCCCTGTTCTTGATAATCCAGTTGTATGCTTTGAGATTTACTGTTCTGAATCAGATTCATGGAGGTGCTCTCCTTCAGACTGTCTAGAGCTGGAAAATACAAGACTTGCAGGTGGAGGATATTATATGAAGGGGGTGGCTTACTGGAGGAATACATCATCGAATG</gDNA_template>
            <first_frame> S  R  R  R  *  G  F  P  A  I  L  C  H  S  F  L  V  F  R  R  L  Y  S  P  E  F  *  R  I  A  L   : L  Q  *  N  F  L  K  P  K  L  S  S  R  A  L  L  I   : E  K  W  H  V  L  G  L  T  C  *  M  M  N  L  W  R  R  T  C  I  L  T  P  L  S  F  T  L  L  L  N  L  R  V  V  G  L  T  R :   *  Q  S  L  T  *  E  L  L  L  I  R  W  R  K  G  T  M  V  L  N  I  L  S  K  S  *  *  E  *  T  *  R  S  K  M  *  R  R  D  I  Y  C  L  S  S  P  L  N  H  *  *  S  F  G  Q  S  P  K  N  G  I  S  G  *  L  V  H  Y  L  R  T  I  K  V  Q  H  F  R  S  F  Q  A  T  F  I  K  D  W  I  M  *  M  I  L  L  Y  F  C  L  C  I  V  L  Q  L  E  S  R  V  L  H  F  V  S  C  L  *  R  L  K  Y  *  V  L  A  A  G  C  S  F  V  K  G  R  T  A  I  M  F  A  I  L  Q  P  K  T  G  K  S  F  L  L  L  N  I  T  T  D  L  I  L  L  L  L  L  H  L  I  L  S  S  I  L  N  H  F  I  V  W  S  L  Q  S  L  F  L  I  I  Q  L  Y  A  L  R  F  T  V  L  N  Q  I  H  G  G  A  L  L  Q  T  V  *  S  W  K  I  Q  D  L  Q  V  E  D  I  I  *  R  G  W  L  T  G  G  I  H  H  R  M </first_frame>
            <second_frame>  R  V  V  V  R  V  F  R  R  F  F  A  I  L  S  W  F  S  G  D  F  T  H  Q  N  F  S  A  L  H  F  :  Y  S  E  I  S  *  N  P  S  Y  H  Q  G  L  C  *  *  :  K  N  G  M  F  W  D  *  H  A  E  *  *  I  F  G  G  G  H  V  F  *  L  L  *  V  L  R  C  C  *  T  S  G  W  W  D  *  L   : V  S  R  V  *  L  E  N  C  C  L  *  G  G  G  R  E  Q  W  F  *  I  S  C  R  N  H  N  E  S  E  H  D  D  Q  R  C  S  E  E  T  Y  T  A  F  P  P  R  *  I  T  D  E  A  S  G  S  L  Q  R  M  E  S  V  D  S  *  S  I  T  C  V  Q  S  K  F  N  I  S  E  A  F  R  L  L  L  S  K  T  G  *  C  R  *  S  S  Y  T  F  V  S  A  S  F  C  N  W  S  P  E  S  F  T  S  F  L  A  C  E  G  *  S  T  K  F  *  Q  R  V  A  P  L  S  R  E  G  Q  L  L  C  L  Q  S  C  N  Q  R  L  E  K  A  S  S  S  S  I  L  P  R  I  *  S  C  C  C  S  C  I  *  S  S  V  Q  Y  *  I  I  L  S  C  G  R  C  S  P  C  S  *  *  S  S  C  M  L  *  D  L  L  F  *  I  R  F  M  E  V  L  S  F  R  L  S  R  A  G  K  Y  K  T  C  R  W  R  I  L  Y  E  G  G  G  L  L  E  E  Y  I  I  E   </second_frame>
            <third_frame>   A  S  S  L  G  F  S  G  D  S  L  P  F  F  L  G  F  P  A  T  L  L  T  R  I  L  A  H  C  T  F :   T  V  K  F  L  E  T  Q  V  I  I  K  G  S  A  D  R :   K  M  A  C  S  G  I  D  M  L  N  D  E  S  L  E  E  D  M  Y  S  D  S  S  E  F  Y  V  A  V  K  P  Q  G  G  G  I  D  S  :  L  A  E  F  D  L  R  T  A  A  Y  K  V  E  E  G  N  N  G  S  K  Y  P  V  E  I  I  M  R  V  N  M  T  I  K  D  V  A  K  R  H  I  L  P  F  L  P  A  K  S  L  M  K  L  R  A  V  S  K  E  W  N  Q  W  I  A  S  P  L  L  A  Y  N  Q  S  S  T  F  Q  K  L  S  G  Y  F  Y  Q  R  L  D  N  V  D  D  P  P  I  L  L  S  L  H  R  S  A  I  G  V  P  S  P  S  L  R  F  L  P  V  K  V  K  V  L  S  S  S  S  G  L  L  L  C  Q  G  K  D  S  Y  Y  V  C  N  P  A  T  K  D  W  K  K  L  P  P  P  Q  Y  Y  H  G  S  D  P  A  V  A  L  A  F  D  P  Q  F  N  I  E  S  F  Y  R  V  V  A  A  V  P  V  L  D  N  P  V  V  C  F  E  I  Y  C  S  E  S  D  S  W  R  C  S  P  S  D  C  L  E  L  E  N  T  R  L  A  G  G  G  Y  Y  M  K  G  V  A  Y  W  R  N  T  S  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99942" stop="99851"/>
                    <exon start="99509" stop="99459"/>
                    <exon start="99367" stop="99250"/>
                    <exon start="98499" stop="97786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSLGFSGDSLPFFLGFPATLLTRILAHCTFTVKFLETQVIIKGSADRKMACSGIDMLNDESLEEDMYSDSSEFYVAVKPQGGGIDSLAEFDLRTAAYKVEEGNNGSKYPVEIIMRVNMTIKDVAKRHILPFLPAKSLMKLRAVSKEWNQWIASPLLAYNQSSTFQKLSGYFYQRLDNVDDPPILLSLHRSAIGVPSPSLRFLPVKVKVLSSSSGLLLCQGKDSYYVCNPATKDWKKLPPPQYYHGSDPAVALAFDPQFNIESFYRVVAAVPVLDNPVVCFEIYCSESDSWRCSPSDCLELENTRLAGGGYYMKGVAYWRNTSSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="105136" PGL_stop="104608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105136" e_stop="104608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="105136" e_stop="104608" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105136" stop="104608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAAAATCAAATGCTTATCATGGATCAGATCCAGCAATTGTGCTCTTATTTGAACCATCATTGCTCAACTTTGTAGCAGAGTACAAAATTATATGTGCTTTTCCATCGACAGATTTTGACAAGGCAACTGAATTTGATATATATTACTCAAGAGAGGGTTGTTGGAAAATTGCTGAGGAGATGTGCTTTGGAAGTAGAACAATATTTCCAAAATCAGGGATCCATGTGAATGGCGTTGTTTACTGGATGACAAGTAAGAATATTCTTGCTTTTGATCTAACAAAGGGTAGGACACAGCTCCTTGAAAGCTATGGCACTCGTGGGTTCTTGGGGACTTTTAGTGGAAAGCTCTGTAAGGTTGATGTCAGTGGTGATATAATCAGCTTAAACGTTTTGGCTAATACCCACTCAAATACAATGCAAATAGGTAGCCAAATCAAAATGTGGTCAGAGAAAGAGATTGTTGTTCTTGACAGTGAAATTGTTGGGGATGGTGCAGCAAGGAACCACACAGTTTTACATGTTGAC</gDNA_template>
            <first_frame> T  K  I  K  C  L  S  W  I  R  S  S  N  C  A  L  I  *  T  I  I  A  Q  L  C  S  R  V  Q  N  Y  M  C  F  S  I  D  R  F  *  Q  G  N  *  I  *  Y  I  L  L  K  R  G  L  L  E  N  C  *  G  D  V  L  W  K  *  N  N  I  S  K  I  R  D  P  C  E  W  R  C  L  L  D  D  K  *  E  Y  S  C  F  *  S  N  K  G  *  D  T  A  P  *  K  L  W  H  S  W  V  L  G  D  F  *  W  K  A  L  *  G  *  C  Q  W  *  Y  N  Q  L  K  R  F  G  *  Y  P  L  K  Y  N  A  N  R  *  P  N  Q  N  V  V  R  E  R  D  C  C  S  *  Q  *  N  C  W  G  W  C  S  K  E  P  H  S  F  T  C  *  </first_frame>
            <second_frame>  P  K  S  N  A  Y  H  G  S  D  P  A  I  V  L  L  F  E  P  S  L  L  N  F  V  A  E  Y  K  I  I  C  A  F  P  S  T  D  F  D  K  A  T  E  F  D  I  Y  Y  S  R  E  G  C  W  K  I  A  E  E  M  C  F  G  S  R  T  I  F  P  K  S  G  I  H  V  N  G  V  V  Y  W  M  T  S  K  N  I  L  A  F  D  L  T  K  G  R  T  Q  L  L  E  S  Y  G  T  R  G  F  L  G  T  F  S  G  K  L  C  K  V  D  V  S  G  D  I  I  S  L  N  V  L  A  N  T  H  S  N  T  M  Q  I  G  S  Q  I  K  M  W  S  E  K  E  I  V  V  L  D  S  E  I  V  G  D  G  A  A  R  N  H  T  V  L  H  V  D </second_frame>
            <third_frame>   Q  N  Q  M  L  I  M  D  Q  I  Q  Q  L  C  S  Y  L  N  H  H  C  S  T  L  *  Q  S  T  K  L  Y  V  L  F  H  R  Q  I  L  T  R  Q  L  N  L  I  Y  I  T  Q  E  R  V  V  G  K  L  L  R  R  C  A  L  E  V  E  Q  Y  F  Q  N  Q  G  S  M  *  M  A  L  F  T  G  *  Q  V  R  I  F  L  L  L  I  *  Q  R  V  G  H  S  S  L  K  A  M  A  L  V  G  S  W  G  L  L  V  E  S  S  V  R  L  M  S  V  V  I  *  S  A  *  T  F  W  L  I  P  T  Q  I  Q  C  K  *  V  A  K  S  K  C  G  Q  R  K  R  L  L  F  L  T  V  K  L  L  G  M  V  Q  Q  G  T  T  Q  F  Y  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105135" stop="104608"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKSNAYHGSDPAIVLLFEPSLLNFVAEYKIICAFPSTDFDKATEFDIYYSREGCWKIAEEMCFGSRTIFPKSGIHVNGVVYWMTSKNILAFDLTKGRTQLLESYGTRGFLGTFSGKLCKVDVSGDIISLNVLANTHSNTMQIGSQIKMWSEKEIVVLDSEIVGDGAARNHTVLHVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="111655" PGL_stop="108212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111655" e_stop="111037"/>
            <exon e_start="109639" e_stop="109577"/>
            <exon e_start="109490" e_stop="109332"/>
            <exon e_start="109078" e_stop="108212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.670" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111655" e_stop="111037" e_length="619"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.670">
            <gDNA_intron_boundary i_start="111036" i_stop="109640" i_length="1397"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109639" e_stop="109577" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109576" i_stop="109491" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109490" e_stop="109332" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.963">
            <gDNA_intron_boundary i_start="109331" i_stop="109079" i_length="253"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="109078" e_stop="108212" e_length="867"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111655" stop="111037"/>
              <exon start="109639" stop="109581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111589" stop="111439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109604" stop="109577"/>
              <exon start="109490" stop="109332"/>
              <exon start="109078" stop="108212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAATTCCCCACGCCTAGCTAGTTGAAATCAGAAAAATGCGGTGTCCGTACTGCTCGGCGGAGCAAGGGCGGTGTACCAGCAGCACCAGTGGCAGACCGATAACCGAGTGCACATCCTGCGGCCGGGTAGTGGAGGAGCGATTAACCCAATCCCACCATCTTTTTCATACCCGTGCCCAAGATTCTCCTCTGTGCCTGGCTACTTCTGATCTCCCCACTCTTCCCATCTCCGCCACTAACGACGATGAAGACCCATTTGAACCCACTGGTTTCATCACCACTTTCTCTACTTGGTCTCTCGAACCCTACCCAGTATTTGCCCAATCCTCCATTTCATTCGCCGGTCACCTTGCAGAGCTCGAGCGGGTCCTCGAAATGACGTCAACTTCCTCCAGTTCGTCCTCTTCTTCTGTCGTGGTGGAAAATCTCCGGGCTTATTTGCAGATTATTGATGTGGCTTCTATTCTGCGACTGGATTCTGATATTTCGGACCACGCGTTTCAGCTCTTCAGGGATTGTTCTTCAGCAACTTGCTTAAGGAATCGGAGTGTTGAAGCGCTTGCTACTGCTGCTCTTGTGCACGCTATCAGGGAAGCCCAAGAGCCGAGAACTCTCCAG : GTCAACTGAACATTTGGCTTTTTTCGCCTCTTCCACTGGATGCTTATTTTTTGCAACTGAGTG : GAAATATCAGTTGCGGCCAATTTACCTCAGAAGGAAATCGGGAAGTACATAAAGATTCTTGGAGAAGCGTTACAACTCAGTCAACCTATCAATAGTAATTCTATATCAGTCCATATGCCAAGGTTTTGTACACTCCTTCAGCTGAATAAATCTGCTCAG : GAGCTGGCGACTCACATTGGTGAAGTAATCATCAATAAATGCTTTTGCACTAGAAGGAATCCAATTAGCATCTCTGCTGCTGCTATATATTTGGCATGTCAACTAGAGGACAAGCGGAAGACCCAGGCTGAAATATGTAAGGTGACTGGACTAACTGAGGTTACTCTTCGTAAGGTGTACAAGGAGCTTTTGGAGAACTGGGATGATCTCCTACCATCAAGTTATAAACCAGTTGTTCCACCAGAGAAGGCTTTTCCTTCAGCTACCATTGCTACAGGCCGTTCATCAACACCGAGAGTTGATATAGTTGAGGGAACTTCATCTGAGAGGGACAAGCCAGTTAAACCAGTCGACTCATTAGATATATCTCCTCAGATCAGAGGCAAGGAGGACTCCGACAGCAAAGATAATATTAATACAACTCAATTATCTTGGCCACCACCATTTTGGAAGCCTCAAGCTCCTGCTGAAGGTGGTGTTAAATCAGCTACAGATAAGAGTCAGAATGCTACTGAAGAAATGGAGATTGATTTATAATATAAATCTCACCTTTTCACGAATAGCAAAAACTGCTTCTAGTTCTTTGATGTCAGCCAGTTCTGTTATCACCTGTGTCAACTGCAACTTCAGCTTCAGTGTTCTGAATCTCCAGCCTGCTGTATCACCTGGCTCTTTTGCAATGTTCAAGCGCTACTACCACAAAAGGTTGCATATAATAATCATGTAGATAGAGGATTCATTAAGTAAAGTTAGAATGAGGAGCCATATGTGGCTGGATAATAAGCAATTACTTTGGTTAGAAGATGGGGGGCCTATAAGAGGGAGAAATAGTTTATTCAAAAAGGCCTCGCATAAATTTCAGTTAGT</gDNA_template>
            <first_frame> C  N  S  P  R  L  A  S  *  N  Q  K  N  A  V  S  V  L  L  G  G  A  R  A  V  Y  Q  Q  H  Q  W  Q  T  D  N  R  V  H  I  L  R  P  G  S  G  G  A  I  N  P  I  P  P  S  F  S  Y  P  C  P  R  F  S  S  V  P  G  Y  F  *  S  P  H  S  S  H  L  R  H  *  R  R  *  R  P  I  *  T  H  W  F  H  H  H  F  L  Y  L  V  S  R  T  L  P  S  I  C  P  I  L  H  F  I  R  R  S  P  C  R  A  R  A  G  P  R  N  D  V  N  F  L  Q  F  V  L  F  F  C  R  G  G  K  S  P  G  L  F  A  D  Y  *  C  G  F  Y  S  A  T  G  F  *  Y  F  G  P  R  V  S  A  L  Q  G  L  F  F  S  N  L  L  K  E  S  E  C  *  S  A  C  Y  C  C  S  C  A  R  Y  Q  G  S  P  R  A  E  N  S  P   : G  Q  L  N  I  W  L  F  S  P  L  P  L  D  A  Y  F  L  Q  L  S   : G  N  I  S  C  G  Q  F  T  S  E  G  N  R  E  V  H  K  D  S  W  R  S  V  T  T  Q  S  T  Y  Q  *  *  F  Y  I  S  P  Y  A  K  V  L  Y  T  P  S  A  E  *  I  C  S   : G  A  G  D  S  H  W  *  S  N  H  Q  *  M  L  L  H  *  K  E  S  N  *  H  L  C  C  C  Y  I  F  G  M  S  T  R  G  Q  A  E  D  P  G  *  N  M  *  G  D  W  T  N  *  G  Y  S  S  *  G  V  Q  G  A  F  G  E  L  G  *  S  P  T  I  K  L  *  T  S  C  S  T  R  E  G  F  S  F  S  Y  H  C  Y  R  P  F  I  N  T  E  S  *  Y  S  *  G  N  F  I  *  E  G  Q  A  S  *  T  S  R  L  I  R  Y  I  S  S  D  Q  R  Q  G  G  L  R  Q  Q  R  *  Y  *  Y  N  S  I  I  L  A  T  T  I  L  E  A  S  S  S  C  *  R  W  C  *  I  S  Y  R  *  E  S  E  C  Y  *  R  N  G  D  *  F  I  I  *  I  S  P  F  H  E  *  Q  K  L  L  L  V  L  *  C  Q  P  V  L  L  S  P  V  S  T  A  T  S  A  S  V  F  *  I  S  S  L  L  Y  H  L  A  L  L  Q  C  S  S  A  T  T  T  K  G  C  I  *  *  S  C  R  *  R  I  H  *  V  K  L  E  *  G  A  I  C  G  W  I  I  S  N  Y  F  G  *  K  M  G  G  L  *  E  G  E  I  V  Y  S  K  R  P  R  I  N  F  S  *  </first_frame>
            <second_frame>  A  I  P  H  A  *  L  V  E  I  R  K  M  R  C  P  Y  C  S  A  E  Q  G  R  C  T  S  S  T  S  G  R  P  I  T  E  C  T  S  C  G  R  V  V  E  E  R  L  T  Q  S  H  H  L  F  H  T  R  A  Q  D  S  P  L  C  L  A  T  S  D  L  P  T  L  P  I  S  A  T  N  D  D  E  D  P  F  E  P  T  G  F  I  T  T  F  S  T  W  S  L  E  P  Y  P  V  F  A  Q  S  S  I  S  F  A  G  H  L  A  E  L  E  R  V  L  E  M  T  S  T  S  S  S  S  S  S  S  S  V  V  V  E  N  L  R  A  Y  L  Q  I  I  D  V  A  S  I  L  R  L  D  S  D  I  S  D  H  A  F  Q  L  F  R  D  C  S  S  A  T  C  L  R  N  R  S  V  E  A  L  A  T  A  A  L  V  H  A  I  R  E  A  Q  E  P  R  T  L  Q  :  V  N  *  T  F  G  F  F  R  L  F  H  W  M  L  I  F  C  N  *  V  :  E  I  S  V  A  A  N  L  P  Q  K  E  I  G  K  Y  I  K  I  L  G  E  A  L  Q  L  S  Q  P  I  N  S  N  S  I  S  V  H  M  P  R  F  C  T  L  L  Q  L  N  K  S  A  Q  :  E  L  A  T  H  I  G  E  V  I  I  N  K  C  F  C  T  R  R  N  P  I  S  I  S  A  A  A  I  Y  L  A  C  Q  L  E  D  K  R  K  T  Q  A  E  I  C  K  V  T  G  L  T  E  V  T  L  R  K  V  Y  K  E  L  L  E  N  W  D  D  L  L  P  S  S  Y  K  P  V  V  P  P  E  K  A  F  P  S  A  T  I  A  T  G  R  S  S  T  P  R  V  D  I  V  E  G  T  S  S  E  R  D  K  P  V  K  P  V  D  S  L  D  I  S  P  Q  I  R  G  K  E  D  S  D  S  K  D  N  I  N  T  T  Q  L  S  W  P  P  P  F  W  K  P  Q  A  P  A  E  G  G  V  K  S  A  T  D  K  S  Q  N  A  T  E  E  M  E  I  D  L  *  Y  K  S  H  L  F  T  N  S  K  N  C  F  *  F  F  D  V  S  Q  F  C  Y  H  L  C  Q  L  Q  L  Q  L  Q  C  S  E  S  P  A  C  C  I  T  W  L  F  C  N  V  Q  A  L  L  P  Q  K  V  A  Y  N  N  H  V  D  R  G  F  I  K  *  S  *  N  E  E  P  Y  V  A  G  *  *  A  I  T  L  V  R  R  W  G  A  Y  K  R  E  K  *  F  I  Q  K  G  L  A  *  I  S  V  S </second_frame>
            <third_frame>   Q  F  P  T  P  S  *  L  K  S  E  K  C  G  V  R  T  A  R  R  S  K  G  G  V  P  A  A  P  V  A  D  R  *  P  S  A  H  P  A  A  G  *  W  R  S  D  *  P  N  P  T  I  F  F  I  P  V  P  K  I  L  L  C  A  W  L  L  L  I  S  P  L  F  P  S  P  P  L  T  T  M  K  T  H  L  N  P  L  V  S  S  P  L  S  L  L  G  L  S  N  P  T  Q  Y  L  P  N  P  P  F  H  S  P  V  T  L  Q  S  S  S  G  S  S  K  *  R  Q  L  P  P  V  R  P  L  L  L  S  W  W  K  I  S  G  L  I  C  R  L  L  M  W  L  L  F  C  D  W  I  L  I  F  R  T  T  R  F  S  S  S  G  I  V  L  Q  Q  L  A  *  G  I  G  V  L  K  R  L  L  L  L  L  L  C  T  L  S  G  K  P  K  S  R  E  L  S  R :   S  T  E  H  L  A  F  F  A  S  S  T  G  C  L  F  F  A  T  E  W :   K  Y  Q  L  R  P  I  Y  L  R  R  K  S  G  S  T  *  R  F  L  E  K  R  Y  N  S  V  N  L  S  I  V  I  L  Y  Q  S  I  C  Q  G  F  V  H  S  F  S  *  I  N  L  L  R :   S  W  R  L  T  L  V  K  *  S  S  I  N  A  F  A  L  E  G  I  Q  L  A  S  L  L  L  L  Y  I  W  H  V  N  *  R  T  S  G  R  P  R  L  K  Y  V  R  *  L  D  *  L  R  L  L  F  V  R  C  T  R  S  F  W  R  T  G  M  I  S  Y  H  Q  V  I  N  Q  L  F  H  Q  R  R  L  F  L  Q  L  P  L  L  Q  A  V  H  Q  H  R  E  L  I  *  L  R  E  L  H  L  R  G  T  S  Q  L  N  Q  S  T  H  *  I  Y  L  L  R  S  E  A  R  R  T  P  T  A  K  I  I  L  I  Q  L  N  Y  L  G  H  H  H  F  G  S  L  K  L  L  L  K  V  V  L  N  Q  L  Q  I  R  V  R  M  L  L  K  K  W  R  L  I  Y  N  I  N  L  T  F  S  R  I  A  K  T  A  S  S  S  L  M  S  A  S  S  V  I  T  C  V  N  C  N  F  S  F  S  V  L  N  L  Q  P  A  V  S  P  G  S  F  A  M  F  K  R  Y  Y  H  K  R  L  H  I  I  I  M  *  I  E  D  S  L  S  K  V  R  M  R  S  H  M  W  L  D  N  K  Q  L  L  W  L  E  D  G  G  P  I  R  G  R  N  S  L  F  K  K  A  S  H  K  F  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109579" stop="109577"/>
                    <exon start="109490" stop="109332"/>
                    <exon start="109078" stop="108542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEISVAANLPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVIINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSSYKPVVPPEKAFPSATIATGRSSTPRVDIVEGTSSERDKPVKPVDSLDISPQIRGKEDSDSKDNINTTQLSWPPPFWKPQAPAEGGVKSATDKSQNATEEMEIDL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111636" stop="111037"/>
                    <exon start="109639" stop="109631"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVEIRKMRCPYCSAEQGRCTSSTSGRPITECTSCGRVVEERLTQSHHLFHTRAQDSPLCLATSDLPTLPISATNDDEDPFEPTGFITTFSTWSLEPYPVFAQSSISFAGHLAELERVLEMTSTSSSSSSSSVVVENLRAYLQIIDVASILRLDSDISDHAFQLFRDCSSATCLRNRSVEALATAALVHAIREAQEPRTLQVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="112938" PGL_stop="117232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112938" e_stop="113320"/>
            <exon e_start="113484" e_stop="113699"/>
            <exon e_start="117174" e_stop="117232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112938" e_stop="113320" e_length="383"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113321" i_stop="113483" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113484" e_stop="113699" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113700" i_stop="117173" i_length="3474"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117174" e_stop="117232" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112938" stop="113320"/>
              <exon start="113484" stop="113699"/>
              <exon start="117174" stop="117232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAATAGATTATCCAGGAGAATCCCAGAATAGAGATGCAATCAAATTCAAATAAACCAAACGTACATATAAAAGGGAAAAGGGAAAAGGCAAAAAGGAATTTTATTTGTTCAAAAAAGAGAAAGAAGGAATGAGGGATGACGATCTTCCCATATCAACGCCAACAGCACCTTCATCGTCGTTCACGACTTCGAAGAAGGAAACTTCCTATTTTGCCATTTTCGGTAGAGGTCGTTATAAGTTTTGGGCCTTTGCCGCTATCTCATTGTTAGCTTTGTGGTCTATGTTCACCGGAACTGTTACCCTCCGTTGGTCCGCCGGTAACCTCAACGCCATATCCGATGACATCGACATTCCCCTCCCCGAAGATCTTGACGTTCTC : GAAATGGAAGAAAGGGAGAAGTTAGTGAAGCATATGTGGGATGTATACACAAACAGCCGTGGGATCAAATTGTTAAAGTTTTGGCAGGAAGCATTTGAGGCTGCCTATGAGGAGTTAGCCAGTGACGTCCCTGGAGTCCCAGAGGATGCCCTTTCTGAGATTGCTAAGATGTCTGTACGCTACATTCCTATTGAATCACCACCTCTTCATTCGTCG : GGAATTCGTGAATTAAGTCTAAGGCAAATGAAGAGGGAGCAAACAACTGCAACAGGGAG</gDNA_template>
            <first_frame> *  K  *  I  I  Q  E  N  P  R  I  E  M  Q  S  N  S  N  K  P  N  V  H  I  K  G  K  R  E  K  A  K  R  N  F  I  C  S  K  K  R  K  K  E  *  G  M  T  I  F  P  Y  Q  R  Q  Q  H  L  H  R  R  S  R  L  R  R  R  K  L  P  I  L  P  F  S  V  E  V  V  I  S  F  G  P  L  P  L  S  H  C  *  L  C  G  L  C  S  P  E  L  L  P  S  V  G  P  P  V  T  S  T  P  Y  P  M  T  S  T  F  P  S  P  K  I  L  T  F  S :   K  W  K  K  G  R  S  *  *  S  I  C  G  M  Y  T  Q  T  A  V  G  S  N  C  *  S  F  G  R  K  H  L  R  L  P  M  R  S  *  P  V  T  S  L  E  S  Q  R  M  P  F  L  R  L  L  R  C  L  Y  A  T  F  L  L  N  H  H  L  F  I  R  R :   E  F  V  N  *  V  *  G  K  *  R  G  S  K  Q  L  Q  Q  G  </first_frame>
            <second_frame>  E  N  R  L  S  R  R  I  P  E  *  R  C  N  Q  I  Q  I  N  Q  T  Y  I  *  K  G  K  G  K  R  Q  K  G  I  L  F  V  Q  K  R  E  R  R  N  E  G  *  R  S  S  H  I  N  A  N  S  T  F  I  V  V  H  D  F  E  E  G  N  F  L  F  C  H  F  R  *  R  S  L  *  V  L  G  L  C  R  Y  L  I  V  S  F  V  V  Y  V  H  R  N  C  Y  P  P  L  V  R  R  *  P  Q  R  H  I  R  *  H  R  H  S  P  P  R  R  S  *  R  S   : R  N  G  R  K  G  E  V  S  E  A  Y  V  G  C  I  H  K  Q  P  W  D  Q  I  V  K  V  L  A  G  S  I  *  G  C  L  *  G  V  S  Q  *  R  P  W  S  P  R  G  C  P  F  *  D  C  *  D  V  C  T  L  H  S  Y  *  I  T  T  S  S  F  V   : G  N  S  *  I  K  S  K  A  N  E  E  G  A  N  N  C  N  R  E </second_frame>
            <third_frame>   K  I  D  Y  P  G  E  S  Q  N  R  D  A  I  K  F  K  *  T  K  R  T  Y  K  R  E  K  G  K  G  K  K  E  F  Y  L  F  K  K  E  K  E  G  M  R  D  D  D  L  P  I  S  T  P  T  A  P  S  S  S  F  T  T  S  K  K  E  T  S  Y  F  A  I  F  G  R  G  R  Y  K  F  W  A  F  A  A  I  S  L  L  A  L  W  S  M  F  T  G  T  V  T  L  R  W  S  A  G  N  L  N  A  I  S  D  D  I  D  I  P  L  P  E  D  L  D  V  L  :  E  M  E  E  R  E  K  L  V  K  H  M  W  D  V  Y  T  N  S  R  G  I  K  L  L  K  F  W  Q  E  A  F  E  A  A  Y  E  E  L  A  S  D  V  P  G  V  P  E  D  A  L  S  E  I  A  K  M  S  V  R  Y  I  P  I  E  S  P  P  L  H  S  S  :  G  I  R  E  L  S  L  R  Q  M  K  R  E  Q  T  T  A  T  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112994" stop="113320"/>
                    <exon start="113484" stop="113699"/>
                    <exon start="117174" stop="117230"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKRTYKREKGKGKKEFYLFKKEKEGMRDDDLPISTPTAPSSSFTTSKKETSYFAIFGRGRYKFWAFAAISLLALWSMFTGTVTLRWSAGNLNAISDDIDIPLPEDLDVLEMEEREKLVKHMWDVYTNSRGIKLLKFWQEAFEAAYEELASDVPGVPEDALSEIAKMSVRYIPIESPPLHSSGIRELSLRQMKREQTTATG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="126740" PGL_stop="128411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126740" e_stop="127433"/>
            <exon e_start="127981" e_stop="128411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126740" e_stop="127433" e_length="694"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127434" i_stop="127980" i_length="547"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="127981" e_stop="128411" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126740" stop="127433"/>
              <exon start="127981" stop="128411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGGAAAAAGTTTGAAGCTTCGGTTCTCCAGAGTTATTGCTTCTTTCAATTCGTGCCGTTCGAAAAACCCTTCTTCTCTTCCCCAAAATCCTAATTTCTTCCCACATAAGCTCACTAGTACAAAACACATTTCCCCCGATTTCCCTCTTATTGATCAAAATCAAAATCAAAATCACCGTAATTACGTGCCAGAATCCACGATGATCTCCGTTGGGTGTTGTAGATCAGAATTCAAGTGGGAGAAAGAAGAGAAGTTTCACGTGGTTTCTAGTTCCTTCGTGTCTGAAGAAGAAGAATGTGAAGAGGAGATCAATTTGGCCTTACGACCTCCTCTTACACCTCCGCGATTCAGTAGAATTGTTGTTGAGAAGAAGAAGAAGAAACAACAGCGAGTTAAAAAAACGAAAACAAAAAGTAGAATCATCCGAATGAGTACTTCCTCAGCTGATGAGTACAGCGGGATATTAAGCGGTACTAATACTGATTGGGATAATAATGAAGAGGAAACTGAATCTTTAGTTTCATCTTCCAGAAGCTGTTACGATTTCTCAAGCGATGACTCATCTACTGATTTCAACCCTCACTTAGAAACCATATGTGAGACCACTACAATGAGGCGTCGTCACAAGAGAAATGCCAACACCAAGAGGAGATCAATCAAGCAATCCAGACCAAGTTTTTCCTCTTCAAAAG : GTAGAAGATCGTCGGTTTCTACGTCATCAGATAGCGAGCTACCGGCAAGGTTATCGGTGTTTAAGAAGCTGATACCGTGTAGTGTGGATGGGAAAGTGAAGGAGAGTTTCGCGATAGTGAAGAAATCTCAGGACCCGTACTAAGATTTCAAGAGATCGATGATGGAAATGATTTTAGAGAAGGAAATGTTTGAGAAGAATGAGCTGGAACAGCTTTTACAATGTTTTCTGTCGTTGAACGGAAAGCATTATCATGGAGTGATAGTTGAGGCGTTCTCAGACATTTGGGAGACTTTGTTTTTAGGTAATAATGATAGAGTAAGGAGGATGTCAATTCATGATCCCACACCCACCTACTGTAGGTAGTAGTAGAAGAACCTCCTTTGATTAATCATGATTTAGTTGTTAATTAATAAATTTAACTTTTCTTTT</gDNA_template>
            <first_frame> M  G  K  S  L  K  L  R  F  S  R  V  I  A  S  F  N  S  C  R  S  K  N  P  S  S  L  P  Q  N  P  N  F  F  P  H  K  L  T  S  T  K  H  I  S  P  D  F  P  L  I  D  Q  N  Q  N  Q  N  H  R  N  Y  V  P  E  S  T  M  I  S  V  G  C  C  R  S  E  F  K  W  E  K  E  E  K  F  H  V  V  S  S  S  F  V  S  E  E  E  E  C  E  E  E  I  N  L  A  L  R  P  P  L  T  P  P  R  F  S  R  I  V  V  E  K  K  K  K  K  Q  Q  R  V  K  K  T  K  T  K  S  R  I  I  R  M  S  T  S  S  A  D  E  Y  S  G  I  L  S  G  T  N  T  D  W  D  N  N  E  E  E  T  E  S  L  V  S  S  S  R  S  C  Y  D  F  S  S  D  D  S  S  T  D  F  N  P  H  L  E  T  I  C  E  T  T  T  M  R  R  R  H  K  R  N  A  N  T  K  R  R  S  I  K  Q  S  R  P  S  F  S  S  S  K   : G  R  R  S  S  V  S  T  S  S  D  S  E  L  P  A  R  L  S  V  F  K  K  L  I  P  C  S  V  D  G  K  V  K  E  S  F  A  I  V  K  K  S  Q  D  P  Y  *  D  F  K  R  S  M  M  E  M  I  L  E  K  E  M  F  E  K  N  E  L  E  Q  L  L  Q  C  F  L  S  L  N  G  K  H  Y  H  G  V  I  V  E  A  F  S  D  I  W  E  T  L  F  L  G  N  N  D  R  V  R  R  M  S  I  H  D  P  T  P  T  Y  C  R  *  *  *  K  N  L  L  *  L  I  M  I  *  L  L  I  N  K  F  N  F  S  F </first_frame>
            <second_frame>  W  E  K  V  *  S  F  G  S  P  E  L  L  L  L  S  I  R  A  V  R  K  T  L  L  L  F  P  K  I  L  I  S  S  H  I  S  S  L  V  Q  N  T  F  P  P  I  S  L  L  L  I  K  I  K  I  K  I  T  V  I  T  C  Q  N  P  R  *  S  P  L  G  V  V  D  Q  N  S  S  G  R  K  K  R  S  F  T  W  F  L  V  P  S  C  L  K  K  K  N  V  K  R  R  S  I  W  P  Y  D  L  L  L  H  L  R  D  S  V  E  L  L  L  R  R  R  R  R  N  N  S  E  L  K  K  R  K  Q  K  V  E  S  S  E  *  V  L  P  Q  L  M  S  T  A  G  Y  *  A  V  L  I  L  I  G  I  I  M  K  R  K  L  N  L  *  F  H  L  P  E  A  V  T  I  S  Q  A  M  T  H  L  L  I  S  T  L  T  *  K  P  Y  V  R  P  L  Q  *  G  V  V  T  R  E  M  P  T  P  R  G  D  Q  S  S  N  P  D  Q  V  F  P  L  Q  K  :  V  E  D  R  R  F  L  R  H  Q  I  A  S  Y  R  Q  G  Y  R  C  L  R  S  *  Y  R  V  V  W  M  G  K  *  R  R  V  S  R  *  *  R  N  L  R  T  R  T  K  I  S  R  D  R  *  W  K  *  F  *  R  R  K  C  L  R  R  M  S  W  N  S  F  Y  N  V  F  C  R  *  T  E  S  I  I  M  E  *  *  L  R  R  S  Q  T  F  G  R  L  C  F  *  V  I  M  I  E  *  G  G  C  Q  F  M  I  P  H  P  P  T  V  G  S  S  R  R  T  S  F  D  *  S  *  F  S  C  *  L  I  N  L  T  F  L   </second_frame>
            <third_frame>   G  K  K  F  E  A  S  V  L  Q  S  Y  C  F  F  Q  F  V  P  F  E  K  P  F  F  S  S  P  K  S  *  F  L  P  T  *  A  H  *  Y  K  T  H  F  P  R  F  P  S  Y  *  S  K  S  K  S  K  S  P  *  L  R  A  R  I  H  D  D  L  R  W  V  L  *  I  R  I  Q  V  G  E  R  R  E  V  S  R  G  F  *  F  L  R  V  *  R  R  R  M  *  R  G  D  Q  F  G  L  T  T  S  S  Y  T  S  A  I  Q  *  N  C  C  *  E  E  E  E  E  T  T  A  S  *  K  N  E  N  K  K  *  N  H  P  N  E  Y  F  L  S  *  *  V  Q  R  D  I  K  R  Y  *  Y  *  L  G  *  *  *  R  G  N  *  I  F  S  F  I  F  Q  K  L  L  R  F  L  K  R  *  L  I  Y  *  F  Q  P  S  L  R  N  H  M  *  D  H  Y  N  E  A  S  S  Q  E  K  C  Q  H  Q  E  E  I  N  Q  A  I  Q  T  K  F  F  L  F  K  R :   *  K  I  V  G  F  Y  V  I  R  *  R  A  T  G  K  V  I  G  V  *  E  A  D  T  V  *  C  G  W  E  S  E  G  E  F  R  D  S  E  E  I  S  G  P  V  L  R  F  Q  E  I  D  D  G  N  D  F  R  E  G  N  V  *  E  E  *  A  G  T  A  F  T  M  F  S  V  V  E  R  K  A  L  S  W  S  D  S  *  G  V  L  R  H  L  G  D  F  V  F  R  *  *  *  *  S  K  E  D  V  N  S  *  S  H  T  H  L  L  *  V  V  V  E  E  P  P  L  I  N  H  D  L  V  V  N  *  *  I  *  L  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126740" stop="127433"/>
                    <exon start="127981" stop="128123"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGKSLKLRFSRVIASFNSCRSKNPSSLPQNPNFFPHKLTSTKHISPDFPLIDQNQNQNHRNYVPESTMISVGCCRSEFKWEKEEKFHVVSSSFVSEEEECEEEINLALRPPLTPPRFSRIVVEKKKKKQQRVKKTKTKSRIIRMSTSSADEYSGILSGTNTDWDNNEEETESLVSSSRSCYDFSSDDSSTDFNPHLETICETTTMRRRHKRNANTKRRSIKQSRPSFSSSKGRRSSVSTSSDSELPARLSVFKKLIPCSVDGKVKESFAIVKKSQDPY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128124" stop="128345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFKRSMMEMILEKEMFEKNELEQLLQCFLSLNGKHYHGVIVEAFSDIWETLFLGNNDRVRRMSIHDPTPTYCR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="138250" PGL_stop="136836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138250" e_stop="138213"/>
            <exon e_start="137903" e_stop="137592"/>
            <exon e_start="137178" e_stop="136836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.974"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="138250" e_stop="138213" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="138212" i_stop="137904" i_length="309"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137903" e_stop="137592" e_length="312"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="137591" i_stop="137179" i_length="413"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="137178" e_stop="136836" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138250" stop="138213"/>
              <exon start="137903" stop="137592"/>
              <exon start="137178" stop="136836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580447" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATTGCTCCCAAAGTTGTTGGTGATCTTGTTGGTGTG : GTTAAGGCATATACCACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATCATGGGCAAAGGTGGTGACCTTCTTCGTTTTGCTGGGCAGGAGTTTGGCACAACCACTGGACGTCCGCGTCGTTGTGGTTGGCTAGACATAGTTGCGCTGAAATTCTGCTGTCAAATAAATGGATTTGCTTCTCTTAACCTTACAAAACTAGACGTGCTGTCAGATCTACCAGAAATTCAATTGGGTGTTACTTACAGGCATCCTGATGGCTCAGCATTACATTCTTTTCCCTCTGATCTTCGTCTTCTTGAGCAAATAAAG : GTGGAGTATGAAGTTTTGCCTGGGTGGAAGAGTGATATTTCTTCCATCAGGAAGTATTCTGACTTGCCTAAGGCTGCACGCGAGTATGTAGAAAGGATAGAGGAGCTTGTTGGGGTACCTATCCATTACATTGGTATAGGACCTGGTCGTGATGCCCTTATCTACAAGTGATTTTAGATTTTTATCATCATATTGCCAGAGTCATATTCTTCAAATTGTTGGTAAACCTTAGACTAAGCTTGTAGTAACATCATGAATTATCATTTTGATGTTATTGCTTAATGTAAAAATTATGTCTCTGTTGTCTTTAAAGCTAGAAATTTTGTTAGACCTCCCAAGGAAA</gDNA_template>
            <first_frame> A  L  L  P  K  L  L  V  I  L  L  V  W :   L  R  H  I  P  Q  E  L  V  L  V  L  F  Q  Q  K  S  W  A  K  V  V  T  F  F  V  L  L  G  R  S  L  A  Q  P  L  D  V  R  V  V  V  V  G  *  T  *  L  R  *  N  S  A  V  K  *  M  D  L  L  L  L  T  L  Q  N  *  T  C  C  Q  I  Y  Q  K  F  N  W  V  L  L  T  G  I  L  M  A  Q  H  Y  I  L  F  P  L  I  F  V  F  L  S  K  *  R :   W  S  M  K  F  C  L  G  G  R  V  I  F  L  P  S  G  S  I  L  T  C  L  R  L  H  A  S  M  *  K  G  *  R  S  L  L  G  Y  L  S  I  T  L  V  *  D  L  V  V  M  P  L  S  T  S  D  F  R  F  L  S  S  Y  C  Q  S  H  I  L  Q  I  V  G  K  P  *  T  K  L  V  V  T  S  *  I  I  I  L  M  L  L  L  N  V  K  I  M  S  L  L  S  L  K  L  E  I  L  L  D  L  P  R  K </first_frame>
            <second_frame>  H  C  S  Q  S  C  W  *  S  C  W  C   : G  *  G  I  Y  H  K  S  W  F  W  S  F  S  N  R  N  H  G  Q  R  W  *  P  S  S  F  C  W  A  G  V  W  H  N  H  W  T  S  A  S  L  W  L  A  R  H  S  C  A  E  I  L  L  S  N  K  W  I  C  F  S  *  P  Y  K  T  R  R  A  V  R  S  T  R  N  S  I  G  C  Y  L  Q  A  S  *  W  L  S  I  T  F  F  S  L  *  S  S  S  S  *  A  N  K   : G  G  V  *  S  F  A  W  V  E  E  *  Y  F  F  H  Q  E  V  F  *  L  A  *  G  C  T  R  V  C  R  K  D  R  G  A  C  W  G  T  Y  P  L  H  W  Y  R  T  W  S  *  C  P  Y  L  Q  V  I  L  D  F  Y  H  H  I  A  R  V  I  F  F  K  L  L  V  N  L  R  L  S  L  *  *  H  H  E  L  S  F  *  C  Y  C  L  M  *  K  L  C  L  C  C  L  *  S  *  K  F  C  *  T  S  Q  G   </second_frame>
            <third_frame>   I  A  P  K  V  V  G  D  L  V  G  V  :  V  K  A  Y  T  T  R  V  G  S  G  P  F  P  T  E  I  M  G  K  G  G  D  L  L  R  F  A  G  Q  E  F  G  T  T  T  G  R  P  R  R  C  G  W  L  D  I  V  A  L  K  F  C  C  Q  I  N  G  F  A  S  L  N  L  T  K  L  D  V  L  S  D  L  P  E  I  Q  L  G  V  T  Y  R  H  P  D  G  S  A  L  H  S  F  P  S  D  L  R  L  L  E  Q  I  K  :  V  E  Y  E  V  L  P  G  W  K  S  D  I  S  S  I  R  K  Y  S  D  L  P  K  A  A  R  E  Y  V  E  R  I  E  E  L  V  G  V  P  I  H  Y  I  G  I  G  P  G  R  D  A  L  I  Y  K  *  F  *  I  F  I  I  I  L  P  E  S  Y  S  S  N  C  W  *  T  L  D  *  A  C  S  N  I  M  N  Y  H  F  D  V  I  A  *  C  K  N  Y  V  S  V  V  F  K  A  R  N  F  V  R  P  P  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138248" stop="138213"/>
                    <exon start="137903" stop="137592"/>
                    <exon start="137178" stop="137008"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAPKVVGDLVGVVKAYTTRVGSGPFPTEIMGKGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKFCCQINGFASLNLTKLDVLSDLPEIQLGVTYRHPDGSALHSFPSDLRLLEQIKVEYEVLPGWKSDISSIRKYSDLPKAAREYVERIEELVGVPIHYIGIGPGRDALIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="136995" PGL_stop="137115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136995" e_stop="137115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="136995" e_stop="137115" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136995" stop="137115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAATCTAAAATCACTTGTAGATAAGGGCATCACGACCAGGTCCTATACCAATGTAATGGATAGGTACCCCAACAAGCTCCTCTATCCTTTCTACATACTCGCGTGCAGCCTTAGGCAA</gDNA_template>
            <first_frame> *  K  S  K  I  T  C  R  *  G  H  H  D  Q  V  L  Y  Q  C  N  G  *  V  P  Q  Q  A  P  L  S  F  L  H  T  R  V  Q  P  *  A  </first_frame>
            <second_frame>  K  N  L  K  S  L  V  D  K  G  I  T  T  R  S  Y  T  N  V  M  D  R  Y  P  N  K  L  L  Y  P  F  Y  I  L  A  C  S  L  R  Q </second_frame>
            <third_frame>   K  I  *  N  H  L  *  I  R  A  S  R  P  G  P  I  P  M  *  W  I  G  T  P  T  S  S  S  I  L  S  T  Y  S  R  A  A  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0128E12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="139790" PGL_stop="138592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139790" e_stop="139386"/>
            <exon e_start="138905" e_stop="138592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139790" e_stop="139386" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="139385" i_stop="138906" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="138905" e_stop="138592" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139790" stop="139386"/>
              <exon start="138905" stop="138592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTATTCCTCTCTCTTGCATATCTCCGTTTATAGCGTGCACAGCGCAACCGCACGCCGCCGCGGCACTACCATTACCATGAACATCTCAACTCTAAGACTCGATTCCAATCCAATCACTACGGCAACGGCGACTCACCGGAATGGGATCCTCGGTTGCAATGGGACCTATAGTTATAGGTTCAATCAGTTCCAGCAGAGGAAGAAGACTGCTTCAATTGTCGTTTGTTCGACAAAGCCTCTTGCCTCGGTAGTGGACCATCAGGGGGTTAATGAGTCAGGACTGAGACGAATTGAGTCACTCAGTCAGGTATCCGGCGTGTTGGGTTGCCAATGGGGCGATGAAGGAAAGGGAAAGCTCGTTGATATACTGGCTAAACATTTCGACATTGTTGCTCGTTGTCAG : GGTGGAGCCAATGCTGGGCATACTATATACAATTCTGAGGGGAAGAAGTTTGCTCTGCACCTTGTCCCTTCTGGGATTCTCAACGAGGAAACTCTGTGTGTTATTGGTAATGGAGTTGTGGTGCATCTACCGGGACTTTTTAAAGAAATTGATGGTCTTGAAGCTAATGGAGTTTCTTGCCAAGGAAGGATCTTGGTATCTGATCGTGCACACTTGTTATTTGATTTTCACCAAGAAATAGATGGGCTTAGAGAAGCTGAGCTAGCTAAATCCTTTATTGGAACCACCAAGAGAGGCATTGGGCCATGCTATTC</gDNA_template>
            <first_frame> S  Y  S  S  L  L  H  I  S  V  Y  S  V  H  S  A  T  A  R  R  R  G  T  T  I  T  M  N  I  S  T  L  R  L  D  S  N  P  I  T  T  A  T  A  T  H  R  N  G  I  L  G  C  N  G  T  Y  S  Y  R  F  N  Q  F  Q  Q  R  K  K  T  A  S  I  V  V  C  S  T  K  P  L  A  S  V  V  D  H  Q  G  V  N  E  S  G  L  R  R  I  E  S  L  S  Q  V  S  G  V  L  G  C  Q  W  G  D  E  G  K  G  K  L  V  D  I  L  A  K  H  F  D  I  V  A  R  C  Q  :  G  G  A  N  A  G  H  T  I  Y  N  S  E  G  K  K  F  A  L  H  L  V  P  S  G  I  L  N  E  E  T  L  C  V  I  G  N  G  V  V  V  H  L  P  G  L  F  K  E  I  D  G  L  E  A  N  G  V  S  C  Q  G  R  I  L  V  S  D  R  A  H  L  L  F  D  F  H  Q  E  I  D  G  L  R  E  A  E  L  A  K  S  F  I  G  T  T  K  R  G  I  G  P  C  Y   </first_frame>
            <second_frame>  L  I  P  L  S  C  I  S  P  F  I  A  C  T  A  Q  P  H  A  A  A  A  L  P  L  P  *  T  S  Q  L  *  D  S  I  P  I  Q  S  L  R  Q  R  R  L  T  G  M  G  S  S  V  A  M  G  P  I  V  I  G  S  I  S  S  S  R  G  R  R  L  L  Q  L  S  F  V  R  Q  S  L  L  P  R  *  W  T  I  R  G  L  M  S  Q  D  *  D  E  L  S  H  S  V  R  Y  P  A  C  W  V  A  N  G  A  M  K  E  R  E  S  S  L  I  Y  W  L  N  I  S  T  L  L  L  V  V  R :   V  E  P  M  L  G  I  L  Y  T  I  L  R  G  R  S  L  L  C  T  L  S  L  L  G  F  S  T  R  K  L  C  V  L  L  V  M  E  L  W  C  I  Y  R  D  F  L  K  K  L  M  V  L  K  L  M  E  F  L  A  K  E  G  S  W  Y  L  I  V  H  T  C  Y  L  I  F  T  K  K  *  M  G  L  E  K  L  S  *  L  N  P  L  L  E  P  P  R  E  A  L  G  H  A  I  </second_frame>
            <third_frame>   L  F  L  S  L  A  Y  L  R  L  *  R  A  Q  R  N  R  T  P  P  R  H  Y  H  Y  H  E  H  L  N  S  K  T  R  F  Q  S  N  H  Y  G  N  G  D  S  P  E  W  D  P  R  L  Q  W  D  L  *  L  *  V  Q  S  V  P  A  E  E  E  D  C  F  N  C  R  L  F  D  K  A  S  C  L  G  S  G  P  S  G  G  *  *  V  R  T  E  T  N  *  V  T  Q  S  G  I  R  R  V  G  L  P  M  G  R  *  R  K  G  K  A  R  *  Y  T  G  *  T  F  R  H  C  C  S  L  S   : G  W  S  Q  C  W  A  Y  Y  I  Q  F  *  G  E  E  V  C  S  A  P  C  P  F  W  D  S  Q  R  G  N  S  V  C  Y  W  *  W  S  C  G  A  S  T  G  T  F  *  R  N  *  W  S  *  S  *  W  S  F  L  P  R  K  D  L  G  I  *  S  C  T  L  V  I  *  F  S  P  R  N  R  W  A  *  R  S  *  A  S  *  I  L  Y  W  N  H  Q  E  R  H  W  A  M  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139790" stop="139386"/>
                    <exon start="138905" stop="138594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYSSLLHISVYSVHSATARRRGTTITMNISTLRLDSNPITTATATHRNGILGCNGTYSYRFNQFQQRKKTASIVVCSTKPLASVVDHQGVNESGLRRIESLSQVSGVLGCQWGDEGKGKLVDILAKHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEETLCVIGNGVVVHLPGLFKEIDGLEANGVSCQGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTKRGIGPCY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="144732" PGL_stop="144188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144732" e_stop="144188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="144732" e_stop="144188" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144732" stop="144188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGACCAGTTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATTGTGTCCCCCAGCTGCTTGATGAAATTTCAGTGAAGTATGGATTTTTACCAGATAAAGTGTCGTACGATATACTAATTAGGTCATATTGTGAAATGAGATCGTCGAAAATGGCAATAAAAATACTCAAGGTGATAGAGGAGAAAAGTGTGGAGATTACAACGATTACTTTCACTACCATACTTCATTCATTCTACAAGAAAGGGAAGAATGATGAGGCGGAGAAGGTATGGAACGAGATGGTGAACAAAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATCATAAACATTCAGGGGGGTGATTTGGAGGGCGTGAAAGCTTTAATTGAGGAAATGACGATGTTGGATTGAAACCTGATACGACTAGCTACAATTACTTGATGACTTGTTATTGTAACAATGAATTGATGGACGAGGCACAAATAGTTTATGATGATCTGG</gDNA_template>
            <first_frame> S  K  F  I  I  R  W  M  I  *  A  P  P  D  Q  L  F  P  S  M  C  F  Y  Q  L  A  C  A  Q  N  Y  M  I  V  S  P  S  C  L  M  K  F  Q  *  S  M  D  F  Y  Q  I  K  C  R  T  I  Y  *  L  G  H  I  V  K  *  D  R  R  K  W  Q  *  K  Y  S  R  *  *  R  R  K  V  W  R  L  Q  R  L  L  S  L  P  Y  F  I  H  S  T  R  K  G  R  M  M  R  R  R  R  Y  G  T  R  W  *  T  K  G  V  V  Q  M  L  V  H  T  M  *  R  S  *  T  F  R  G  V  I  W  R  A  *  K  L  *  L  R  K  *  R  C  W  I  E  T  *  Y  D  *  L  Q  L  L  D  D  L  L  L  *  Q  *  I  D  G  R  G  T  N  S  L  *  *  S   </first_frame>
            <second_frame>  Q  N  L  S  S  D  G  *  F  R  H  P  Q  T  S  Y  F  L  Q  C  A  F  I  S  L  R  A  L  K  T  I  *  L  C  P  P  A  A  *  *  N  F  S  E  V  W  I  F  T  R  *  S  V  V  R  Y  T  N  *  V  I  L  *  N  E  I  V  E  N  G  N  K  N  T  Q  G  D  R  G  E  K  C  G  D  Y  N  D  Y  F  H  Y  H  T  S  F  I  L  Q  E  R  E  E  *  *  G  G  E  G  M  E  R  D  G  E  Q  R  V  W  S  R  C  W  C  I  Q  C  E  D  H  K  H  S  G  G  *  F  G  G  R  E  S  F  N  *  G  N  D  D  V  G  L  K  P  D  T  T  S  Y  N  Y  L  M  T  C  Y  C  N  N  E  L  M  D  E  A  Q  I  V  Y  D  D  L  </second_frame>
            <third_frame>   K  I  Y  H  Q  M  D  D  L  G  T  P  R  P  V  I  S  F  N  V  L  L  S  A  C  V  R  S  K  L  Y  D  C  V  P  Q  L  L  D  E  I  S  V  K  Y  G  F  L  P  D  K  V  S  Y  D  I  L  I  R  S  Y  C  E  M  R  S  S  K  M  A  I  K  I  L  K  V  I  E  E  K  S  V  E  I  T  T  I  T  F  T  T  I  L  H  S  F  Y  K  K  G  K  N  D  E  A  E  K  V  W  N  E  M  V  N  K  G  C  G  P  D  V  G  A  Y  N  V  K  I  I  N  I  Q  G  G  D  L  E  G  V  K  A  L  I  E  E  M  T  M  L  D  *  N  L  I  R  L  A  T  I  T  *  *  L  V  I  V  T  M  N  *  W  T  R  H  K  *  F  M  M  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144730" stop="144278"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIYHQMDDLGTPRPVISFNVLLSACVRSKLYDCVPQLLDEISVKYGFLPDKVSYDILIRSYCEMRSSKMAIKILKVIEEKSVEITTITFTTILHSFYKKGKNDEAEKVWNEMVNKGCGPDVGAYNVKIINIQGGDLEGVKALIEEMTMLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="146191" PGL_stop="159692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146191" e_stop="146570"/>
            <exon e_start="146660" e_stop="146728"/>
            <exon e_start="146868" e_stop="146975"/>
            <exon e_start="147883" e_stop="147954"/>
            <exon e_start="148582" e_stop="148740"/>
            <exon e_start="149334" e_stop="149369"/>
            <exon e_start="149625" e_stop="149731"/>
            <exon e_start="150742" e_stop="150813"/>
            <exon e_start="153173" e_stop="153221"/>
            <exon e_start="153354" e_stop="153946"/>
            <exon e_start="155209" e_stop="155391"/>
            <exon e_start="155465" e_stop="155585"/>
            <exon e_start="159162" e_stop="159692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.997"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.665" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.972"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.990" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.982" e_score="0.981"/>
          <exon-intron don_prob="0.978" acc_prob="0.935" e_score="0.986"/>
          <exon-intron don_prob="0.954" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.958" e_score="0.985"/>
          <exon-intron don_prob="0.978" acc_prob="0.876" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.983"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="146191" e_stop="146570" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="146571" i_stop="146659" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146660" e_stop="146728" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="146729" i_stop="146867" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="146868" e_stop="146975" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.665">
            <gDNA_intron_boundary i_start="146976" i_stop="147882" i_length="907"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="147883" e_stop="147954" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="147955" i_stop="148581" i_length="627"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="148582" e_stop="148740" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="148741" i_stop="149333" i_length="593"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="149334" e_stop="149369" e_length="36"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.955">
            <gDNA_intron_boundary i_start="149370" i_stop="149624" i_length="255"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="149625" e_stop="149731" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.889" acc_prob="0.982">
            <gDNA_intron_boundary i_start="149732" i_stop="150741" i_length="1010"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="150742" e_stop="150813" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.935">
            <gDNA_intron_boundary i_start="150814" i_stop="153172" i_length="2359"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="153173" e_stop="153221" e_length="49"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="0.977">
            <gDNA_intron_boundary i_start="153222" i_stop="153353" i_length="132"/>
          </intron>
          <exon e_serial="10" e_score="0.985">
            <gDNA_exon_boundary e_start="153354" e_stop="153946" e_length="593"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.958">
            <gDNA_intron_boundary i_start="153947" i_stop="155208" i_length="1262"/>
          </intron>
          <exon e_serial="11" e_score="0.978">
            <gDNA_exon_boundary e_start="155209" e_stop="155391" e_length="183"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.876">
            <gDNA_intron_boundary i_start="155392" i_stop="155464" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="0.983">
            <gDNA_exon_boundary e_start="155465" e_stop="155585" e_length="121"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="155586" i_stop="159161" i_length="3576"/>
          </intron>
          <exon e_serial="13" e_score="0.925">
            <gDNA_exon_boundary e_start="159162" e_stop="159692" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146191" stop="146570"/>
              <exon start="146660" stop="146728"/>
              <exon start="146868" stop="146975"/>
              <exon start="147883" stop="147954"/>
              <exon start="148582" stop="148714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146206" stop="146570"/>
              <exon start="146660" stop="146728"/>
              <exon start="146868" stop="146975"/>
              <exon start="147883" stop="147954"/>
              <exon start="148582" stop="148740"/>
              <exon start="149334" stop="149369"/>
              <exon start="149625" stop="149731"/>
              <exon start="150742" stop="150813"/>
              <exon start="153173" stop="153221"/>
              <exon start="153354" stop="153946"/>
              <exon start="155209" stop="155391"/>
              <exon start="155465" stop="155585"/>
              <exon start="159162" stop="159692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGGAGTTGAAGTTTCACTTTTCCATCCAGAAAATTGCAGTGATGGATTTGGACTTCGACGGTCCAAGTAAAGTCCCGAGCAGGCAAGCTCGTTTCGCTCCCAAGAACTCCAAATTAAAGCCCCAACCCAAAAGTGAAACACTGCCATTGAAGGTAGATTCAGAGATTCCGACTAAAAAGGAAGAATTTGTATCACAACCCCCTCTAAGAGATCATATAGTGAAAAACGGAGAGGCAAAAGTTGAGGACGACGTTCTTTTGAATGGAGAGACTACGGGAAACGATCTTGCAGAAGAACAAGTCGGAATGGAAACTGATAGCGATCAGGATGAAGTTGTTCGTGAAGTTGACGTGTGGCTTACCCCTTCCGCCAATGAG : TTCTATGTACTCCAATATCCGTTGAGGTCCGAATGGCGTCCCTATGGTTTGGATGAAAGATGCCAAGAT : GTGAGGTTGAGACCTTCATCGGCAGAAATGGAAGTTGATTTGGCAATAGATTTTGATTCTAAAAATTTCGACAGAGACTCTGTACATGCAGCAACAATAAAAAAACAG : ATTGTTTCTACAAAATGGGTGCCATCATCTACTTGTGCTGACTTTGCTGTTGGGATCTTCATTGGTGATAAG : TTCCACCTCAATCCTGTTCATGCAATTGTACAGCTCCGACCATCACTGCAGCATCGTAAGGAAAGTGAGTTGAAGAACCTTACCACCAGCAATGATGAAAAAAGTTGTGAAAACGAAGACGTCAAGGAGAAAAAGCCTGTGGGTCTGTCAAAGAAGCAG : AACAAACTACCTGGGAACTACAAGGATATTGGAGAG : CATTGGTTACATCTAAAATACCATGGGACTAGGAGTGACATTTCAGCCAGACATCTTCAAAAAATGGCTATGGAGGGAGGCTCCCCAGTACCATTTTCAATGATCCC : GAGTGATTATCTGAATGCCATTTGTCCTGCAAGACCAACTGACATTGACAGATTAAGAAATCTTAGAACAAG : GTTGTCTCAGAAACCTTTTGAAGAACGTGTTAGAACTTGGCTTCTTGAG : GGACCTCCAATTCATCGTTTTGATACTCTAAAGCACCTAGCTCCAGATAATCCTGTTGATGAGATTTTGGAAGTTCTCAAAAGTTGCGCACAATTAGTTCAAGGATTGTGGGTTGCAAAAAGTTCATTAGTCTATGACACAAACAATGGAGTCGAAGTTTTAGCGAGGAATTTTGTTCTTTATGAGTTTACCAAGAGTACTTTAATTAAGAAGTCAGTGTTTGGCAGGAGGCCTGAATTCCTTAAAGCTGCGACACCAGTTCTAAAATCATTAGCTGTTGAGAGGCCTGACCTGGATGATTGGAAGCTCAAAGAGCTTCCTGACAAGAAATTCGAAAACCTCTATGGTGATGTTGTAAGAGAGCAGGAAGCTATCTGGGAGTCCATGGGGAAACAGATCAATGATATTATGCATGGAGGAAGAAACAGGCCTACTTTGAAGAATCCTCTAAACCCAAAGGCCAACATTCCTGCGTTGTCAAGTAGTGATAAGCCCACTCCTACGACATTTTTGAGAACATCTCTGTCAGAAGAAATTCGTGGAGCTTTACCTAAGGCGCTTCAAAATGTTTTTAGAATCCATAAGGTTTGCAG : TTTGCTTCAAATTTGCGAACTGATGGAAAAGGAAGATCCAATGAAAGCTATAATTTCACCCGCGGGTATTTCTGATGCACTTCGAAAGGAGATAGAGGCAGTGGTTAATCAGATTGCTGTAAACATCCACGGTGTCTATGTTTTGAAGTCATCGCCAGATAATCCACAGTATGATGCATTGAG : GAAAGTTGTAATTGATCTTTTTATGGCCGAAGGGTCGAATGCAAAGCTAAAGAAAGCATCTATAGTTGAAGCTGCCAAGTTGCAACTGGGAAGGGATGTCACCACTGTGGAGTTTCAAAAG : GTTATGAAGGAACTATGTCGTTCAGAAAACTCAGCATGGGTTTTGGGAATCAGTGACAGCAATCCACAACAGTAGTCTGCTATTTTTGATTAAGTCGTACAGGTCATGGGAAGTTCACTGCTAGCTGCAGAAATTCTCAATGCTGAGGAGAAGTTGGCTTTTCTTGAAGTTCCACTTTACTCTTGAGAGTCATAATTGTTCAGTTTTGAGGTTAACACGGAGTCTCGCGTATATGGTTGAGCTGTTGATACGCTTCGCGGTGCATTTGCAAATCTGGGAGAAAATTTAGTTAGGATTAGCAGATGTCAAGCCTTTTTTGCTCATTCTTTTATCATTCAATTTATTCTTTTCATGAACGAAAATATAGTCAGATGTTTCTTTTCAATGTCTTGAATATCTCTGTTAAAATGTATGAATTGTTGCATCTCTTTACTTGCAGAAGAAAATCATTCAGCATATTTGTACCATCAGAAGAAAAATACAAGTTAAAAAGTTTGCCGTTCTTGTAATTATATACGTATTTGATTCACC</gDNA_template>
            <first_frame> T  W  S  *  S  F  T  F  P  S  R  K  L  Q  *  W  I  W  T  S  T  V  Q  V  K  S  R  A  G  K  L  V  S  L  P  R  T  P  N  *  S  P  N  P  K  V  K  H  C  H  *  R  *  I  Q  R  F  R  L  K  R  K  N  L  Y  H  N  P  L  *  E  I  I  *  *  K  T  E  R  Q  K  L  R  T  T  F  F  *  M  E  R  L  R  E  T  I  L  Q  K  N  K  S  E  W  K  L  I  A  I  R  M  K  L  F  V  K  L  T  C  G  L  P  L  P  P  M  S :   S  M  Y  S  N  I  R  *  G  P  N  G  V  P  M  V  W  M  K  D  A  K  M :   *  G  *  D  L  H  R  Q  K  W  K  L  I  W  Q  *  I  L  I  L  K  I  S  T  E  T  L  Y  M  Q  Q  Q  *  K  N  R :   L  F  L  Q  N  G  C  H  H  L  L  V  L  T  L  L  L  G  S  S  L  V  I  S :   S  T  S  I  L  F  M  Q  L  Y  S  S  D  H  H  C  S  I  V  R  K  V  S  *  R  T  L  P  P  A  M  M  K  K  V  V  K  T  K  T  S  R  R  K  S  L  W  V  C  Q  R  S  R :   T  N  Y  L  G  T  T  R  I  L  E  S :   I  G  Y  I  *  N  T  M  G  L  G  V  T  F  Q  P  D  I  F  K  K  W  L  W  R  E  A  P  Q  Y  H  F  Q  *  S   : R  V  I  I  *  M  P  F  V  L  Q  D  Q  L  T  L  T  D  *  E  I  L  E  Q   : G  C  L  R  N  L  L  K  N  V  L  E  L  G  F  L  R :   D  L  Q  F  I  V  L  I  L  *  S  T  *  L  Q  I  I  L  L  M  R  F  W  K  F  S  K  V  A  H  N  *  F  K  D  C  G  L  Q  K  V  H  *  S  M  T  Q  T  M  E  S  K  F  *  R  G  I  L  F  F  M  S  L  P  R  V  L  *  L  R  S  Q  C  L  A  G  G  L  N  S  L  K  L  R  H  Q  F  *  N  H  *  L  L  R  G  L  T  W  M  I  G  S  S  K  S  F  L  T  R  N  S  K  T  S  M  V  M  L  *  E  S  R  K  L  S  G  S  P  W  G  N  R  S  M  I  L  C  M  E  E  E  T  G  L  L  *  R  I  L  *  T  Q  R  P  T  F  L  R  C  Q  V  V  I  S  P  L  L  R  H  F  *  E  H  L  C  Q  K  K  F  V  E  L  Y  L  R  R  F  K  M  F  L  E  S  I  R  F  A   : V  C  F  K  F  A  N  *  W  K  R  K  I  Q  *  K  L  *  F  H  P  R  V  F  L  M  H  F  E  R  R  *  R  Q  W  L  I  R  L  L  *  T  S  T  V  S  M  F  *  S  H  R  Q  I  I  H  S  M  M  H  *   : G  K  L  *  L  I  F  L  W  P  K  G  R  M  Q  S  *  R  K  H  L  *  L  K  L  P  S  C  N  W  E  G  M  S  P  L  W  S  F  K  R :   L  *  R  N  Y  V  V  Q  K  T  Q  H  G  F  W  E  S  V  T  A  I  H  N  S  S  L  L  F  L  I  K  S  Y  R  S  W  E  V  H  C  *  L  Q  K  F  S  M  L  R  R  S  W  L  F  L  K  F  H  F  T  L  E  S  H  N  C  S  V  L  R  L  T  R  S  L  A  Y  M  V  E  L  L  I  R  F  A  V  H  L  Q  I  W  E  K  I  *  L  G  L  A  D  V  K  P  F  L  L  I  L  L  S  F  N  L  F  F  S  *  T  K  I  *  S  D  V  S  F  Q  C  L  E  Y  L  C  *  N  V  *  I  V  A  S  L  Y  L  Q  K  K  I  I  Q  H  I  C  T  I  R  R  K  I  Q  V  K  K  F  A  V  L  V  I  I  Y  V  F  D  S   </first_frame>
            <second_frame>  L  G  V  E  V  S  L  F  H  P  E  N  C  S  D  G  F  G  L  R  R  S  K  *  S  P  E  Q  A  S  S  F  R  S  Q  E  L  Q  I  K  A  P  T  Q  K  *  N  T  A  I  E  G  R  F  R  D  S  D  *  K  G  R  I  C  I  T  T  P  S  K  R  S  Y  S  E  K  R  R  G  K  S  *  G  R  R  S  F  E  W  R  D  Y  G  K  R  S  C  R  R  T  S  R  N  G  N  *  *  R  S  G  *  S  C  S  *  S  *  R  V  A  Y  P  F  R  Q  *   : V  L  C  T  P  I  S  V  E  V  R  M  A  S  L  W  F  G  *  K  M  P  R   : C  E  V  E  T  F  I  G  R  N  G  S  *  F  G  N  R  F  *  F  *  K  F  R  Q  R  L  C  T  C  S  N  N  K  K  T   : D  C  F  Y  K  M  G  A  I  I  Y  L  C  *  L  C  C  W  D  L  H  W  *  *   : V  P  P  Q  S  C  S  C  N  C  T  A  P  T  I  T  A  A  S  *  G  K  *  V  E  E  P  Y  H  Q  Q  *  *  K  K  L  *  K  R  R  R  Q  G  E  K  A  C  G  S  V  K  E  A   : E  Q  T  T  W  E  L  Q  G  Y  W  R   : A  L  V  T  S  K  I  P  W  D  *  E  *  H  F  S  Q  T  S  S  K  N  G  Y  G  G  R  L  P  S  T  I  F  N  D  P  :  E  *  L  S  E  C  H  L  S  C  K  T  N  *  H  *  Q  I  K  K  S  *  N  K  :  V  V  S  E  T  F  *  R  T  C  *  N  L  A  S  *   : G  T  S  N  S  S  F  *  Y  S  K  A  P  S  S  R  *  S  C  *  *  D  F  G  S  S  Q  K  L  R  T  I  S  S  R  I  V  G  C  K  K  F  I  S  L  *  H  K  Q  W  S  R  S  F  S  E  E  F  C  S  L  *  V  Y  Q  E  Y  F  N  *  E  V  S  V  W  Q  E  A  *  I  P  *  S  C  D  T  S  S  K  I  I  S  C  *  E  A  *  P  G  *  L  E  A  Q  R  A  S  *  Q  E  I  R  K  P  L  W  *  C  C  K  R  A  G  S  Y  L  G  V  H  G  E  T  D  Q  *  Y  Y  A  W  R  K  K  Q  A  Y  F  E  E  S  S  K  P  K  G  Q  H  S  C  V  V  K  *  *  *  A  H  S  Y  D  I  F  E  N  I  S  V  R  R  N  S  W  S  F  T  *  G  A  S  K  C  F  *  N  P  *  G  L  Q  :  F  A  S  N  L  R  T  D  G  K  G  R  S  N  E  S  Y  N  F  T  R  G  Y  F  *  C  T  S  K  G  D  R  G  S  G  *  S  D  C  C  K  H  P  R  C  L  C  F  E  V  I  A  R  *  S  T  V  *  C  I  E  :  E  S  C  N  *  S  F  Y  G  R  R  V  E  C  K  A  K  E  S  I  Y  S  *  S  C  Q  V  A  T  G  K  G  C  H  H  C  G  V  S  K   : G  Y  E  G  T  M  S  F  R  K  L  S  M  G  F  G  N  Q  *  Q  Q  S  T  T  V  V  C  Y  F  *  L  S  R  T  G  H  G  K  F  T  A  S  C  R  N  S  Q  C  *  G  E  V  G  F  S  *  S  S  T  L  L  L  R  V  I  I  V  Q  F  *  G  *  H  G  V  S  R  I  W  L  S  C  *  Y  A  S  R  C  I  C  K  S  G  R  K  F  S  *  D  *  Q  M  S  S  L  F  C  S  F  F  Y  H  S  I  Y  S  F  H  E  R  K  Y  S  Q  M  F  L  F  N  V  L  N  I  S  V  K  M  Y  E  L  L  H  L  F  T  C  R  R  K  S  F  S  I  F  V  P  S  E  E  K  Y  K  L  K  S  L  P  F  L  *  L  Y  T  Y  L  I  H  </second_frame>
            <third_frame>   L  E  L  K  F  H  F  S  I  Q  K  I  A  V  M  D  L  D  F  D  G  P  S  K  V  P  S  R  Q  A  R  F  A  P  K  N  S  K  L  K  P  Q  P  K  S  E  T  L  P  L  K  V  D  S  E  I  P  T  K  K  E  E  F  V  S  Q  P  P  L  R  D  H  I  V  K  N  G  E  A  K  V  E  D  D  V  L  L  N  G  E  T  T  G  N  D  L  A  E  E  Q  V  G  M  E  T  D  S  D  Q  D  E  V  V  R  E  V  D  V  W  L  T  P  S  A  N  E  :  F  Y  V  L  Q  Y  P  L  R  S  E  W  R  P  Y  G  L  D  E  R  C  Q  D  :  V  R  L  R  P  S  S  A  E  M  E  V  D  L  A  I  D  F  D  S  K  N  F  D  R  D  S  V  H  A  A  T  I  K  K  Q  :  I  V  S  T  K  W  V  P  S  S  T  C  A  D  F  A  V  G  I  F  I  G  D  K  :  F  H  L  N  P  V  H  A  I  V  Q  L  R  P  S  L  Q  H  R  K  E  S  E  L  K  N  L  T  T  S  N  D  E  K  S  C  E  N  E  D  V  K  E  K  K  P  V  G  L  S  K  K  Q  :  N  K  L  P  G  N  Y  K  D  I  G  E  :  H  W  L  H  L  K  Y  H  G  T  R  S  D  I  S  A  R  H  L  Q  K  M  A  M  E  G  G  S  P  V  P  F  S  M  I  P :   S  D  Y  L  N  A  I  C  P  A  R  P  T  D  I  D  R  L  R  N  L  R  T  R :   L  S  Q  K  P  F  E  E  R  V  R  T  W  L  L  E  :  G  P  P  I  H  R  F  D  T  L  K  H  L  A  P  D  N  P  V  D  E  I  L  E  V  L  K  S  C  A  Q  L  V  Q  G  L  W  V  A  K  S  S  L  V  Y  D  T  N  N  G  V  E  V  L  A  R  N  F  V  L  Y  E  F  T  K  S  T  L  I  K  K  S  V  F  G  R  R  P  E  F  L  K  A  A  T  P  V  L  K  S  L  A  V  E  R  P  D  L  D  D  W  K  L  K  E  L  P  D  K  K  F  E  N  L  Y  G  D  V  V  R  E  Q  E  A  I  W  E  S  M  G  K  Q  I  N  D  I  M  H  G  G  R  N  R  P  T  L  K  N  P  L  N  P  K  A  N  I  P  A  L  S  S  S  D  K  P  T  P  T  T  F  L  R  T  S  L  S  E  E  I  R  G  A  L  P  K  A  L  Q  N  V  F  R  I  H  K  V  C  S :   L  L  Q  I  C  E  L  M  E  K  E  D  P  M  K  A  I  I  S  P  A  G  I  S  D  A  L  R  K  E  I  E  A  V  V  N  Q  I  A  V  N  I  H  G  V  Y  V  L  K  S  S  P  D  N  P  Q  Y  D  A  L  R :   K  V  V  I  D  L  F  M  A  E  G  S  N  A  K  L  K  K  A  S  I  V  E  A  A  K  L  Q  L  G  R  D  V  T  T  V  E  F  Q  K  :  V  M  K  E  L  C  R  S  E  N  S  A  W  V  L  G  I  S  D  S  N  P  Q  Q  *  S  A  I  F  D  *  V  V  Q  V  M  G  S  S  L  L  A  A  E  I  L  N  A  E  E  K  L  A  F  L  E  V  P  L  Y  S  *  E  S  *  L  F  S  F  E  V  N  T  E  S  R  V  Y  G  *  A  V  D  T  L  R  G  A  F  A  N  L  G  E  N  L  V  R  I  S  R  C  Q  A  F  F  A  H  S  F  I  I  Q  F  I  L  F  M  N  E  N  I  V  R  C  F  F  S  M  S  *  I  S  L  L  K  C  M  N  C  C  I  S  L  L  A  E  E  N  H  S  A  Y  L  Y  H  Q  K  K  N  T  S  *  K  V  C  R  S  C  N  Y  I  R  I  *  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146193" stop="146570"/>
                    <exon start="146660" stop="146728"/>
                    <exon start="146868" stop="146975"/>
                    <exon start="147883" stop="147954"/>
                    <exon start="148582" stop="148740"/>
                    <exon start="149334" stop="149369"/>
                    <exon start="149625" stop="149731"/>
                    <exon start="150742" stop="150813"/>
                    <exon start="153173" stop="153221"/>
                    <exon start="153354" stop="153946"/>
                    <exon start="155209" stop="155391"/>
                    <exon start="155465" stop="155585"/>
                    <exon start="159162" stop="159236"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2019</number_coding_nucleotides>
                  <number_encoded_amino_acids>673</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LELKFHFSIQKIAVMDLDFDGPSKVPSRQARFAPKNSKLKPQPKSETLPLKVDSEIPTKKEEFVSQPPLRDHIVKNGEAKVEDDVLLNGETTGNDLAEEQVGMETDSDQDEVVREVDVWLTPSANEFYVLQYPLRSEWRPYGLDERCQDVRLRPSSAEMEVDLAIDFDSKNFDRDSVHAATIKKQIVSTKWVPSSTCADFAVGIFIGDKFHLNPVHAIVQLRPSLQHRKESELKNLTTSNDEKSCENEDVKEKKPVGLSKKQNKLPGNYKDIGEHWLHLKYHGTRSDISARHLQKMAMEGGSPVPFSMIPSDYLNAICPARPTDIDRLRNLRTRLSQKPFEERVRTWLLEGPPIHRFDTLKHLAPDNPVDEILEVLKSCAQLVQGLWVAKSSLVYDTNNGVEVLARNFVLYEFTKSTLIKKSVFGRRPEFLKAATPVLKSLAVERPDLDDWKLKELPDKKFENLYGDVVREQEAIWESMGKQINDIMHGGRNRPTLKNPLNPKANIPALSSSDKPTPTTFLRTSLSEEIRGALPKALQNVFRIHKVCSLLQICELMEKEDPMKAIISPAGISDALRKEIEAVVNQIAVNIHGVYVLKSSPDNPQYDALRKVVIDLFMAEGSNAKLKKASIVEAAKLQLGRDVTTVEFQKVMKELCRSENSAWVLGISDSNPQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159461" stop="159670"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMSSLFCSFFYHSIYSFHERKYSQMFLFNVLNISVKMYELLHLFTCRRKSFSIFVPSEEKYKLKSLPFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="160172" PGL_stop="166207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160172" e_stop="160316"/>
            <exon e_start="160993" e_stop="161273"/>
            <exon e_start="161564" e_stop="161671"/>
            <exon e_start="162327" e_stop="162397"/>
            <exon e_start="163007" e_stop="163080"/>
            <exon e_start="163158" e_stop="163202"/>
            <exon e_start="163289" e_stop="163348"/>
            <exon e_start="164063" e_stop="164123"/>
            <exon e_start="164212" e_stop="164324"/>
            <exon e_start="164677" e_stop="165123"/>
            <exon e_start="165230" e_stop="165365"/>
            <exon e_start="165470" e_stop="165537"/>
            <exon e_start="165842" e_stop="166207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="160172" e_stop="160316" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="160317" i_stop="160992" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="160993" e_stop="161273" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="161274" i_stop="161563" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="161564" e_stop="161671" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="161672" i_stop="162326" i_length="655"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="162327" e_stop="162397" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="162398" i_stop="163006" i_length="609"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="163007" e_stop="163080" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="163081" i_stop="163157" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="163158" e_stop="163202" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="163203" i_stop="163288" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="163289" e_stop="163348" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="163349" i_stop="164062" i_length="714"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="164063" e_stop="164123" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="164124" i_stop="164211" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="164212" e_stop="164324" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="164325" i_stop="164676" i_length="352"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="164677" e_stop="165123" e_length="447"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.815">
            <gDNA_intron_boundary i_start="165124" i_stop="165229" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="165230" e_stop="165365" e_length="136"/>
          </exon>
          <intron i_serial="11" don_prob="0.766" acc_prob="0.999">
            <gDNA_intron_boundary i_start="165366" i_stop="165469" i_length="104"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="165470" e_stop="165537" e_length="68"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="165538" i_stop="165841" i_length="304"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="165842" e_stop="166207" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160172" stop="160316"/>
              <exon start="160993" stop="161273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160180" stop="160316"/>
              <exon start="160993" stop="161273"/>
              <exon start="161564" stop="161671"/>
              <exon start="162327" stop="162397"/>
              <exon start="163007" stop="163080"/>
              <exon start="163158" stop="163202"/>
              <exon start="163289" stop="163348"/>
              <exon start="164063" stop="164123"/>
              <exon start="164212" stop="164324"/>
              <exon start="164677" stop="165123"/>
              <exon start="165230" stop="165365"/>
              <exon start="165470" stop="165537"/>
              <exon start="165842" stop="166207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGGCAAAACTCATTTCTAGCCCTAGTTTTGTACTGAAGAGAAAAATTAGGGTAAAAACGTAGTGGAACGATGCAGGAATATGAAGGTAATGGAGAAGATATAGAGAATAATGGTTCTTCTCCTTACAGTGACTCCAAGTCTCAG : CATACTTCTCGTGACCCCGAGAAAGAAAGGGGCTCATCAAGAAGCAGGGAGAAGGAGAGGGAGAAAGGGCGTGATAAAGACCGGGACAGGGACAGGAATAGAGATAGAGATAGAGACAGGGACAGAGGTAAGGAAAGGGACAAAGATAGGGATAGGGACAGAGAGAGGGAGAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGATCAGAGATCGAGATGAAGATGATCTTCAGCGAACTCGAGATTACGATAG : GCGAAGAGACAATGACAAAGATAGAGAGGACCGACAGAGACACAAGCCTAGCTCTAGGGGTAGATCCGAGCATAGATCAAGGTCTAGATCACGGTCACCATCTAAGAG : CAAAAGGATCAGTGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG : GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAG : TTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG : GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG : TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG : GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG : GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCTTTTTGTGTGTACCAGGATGTCTCTGTTACTGATATTGCTTGTGCAGCTCTTAATGGGATTAAGATGGGGGATAAAACTCTTACTGTTAGGCGGGCTAACCAGGGCACAACCCAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG : AGGTTCATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGCTTGACAGAAGTGGTTAGCGTAGATGAGCTCAAAGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGATTGAATGTGGTAAATTTG : GAGCTCTCCTGAATGTTGTCATTCCACGTCCAAATCCTAATGGCGAGCCTACACCTGGACTCGGGAAG : GTATTCCTGGAGTATGCAGATGTTGACAGTTCCAGCAAAGCTCGCCAAGGGCTGAATGGAAGAAAATTTGGTGGTAACCAAGTTATTGCTGTCTTCTATCCAGAGAACAAGTTCTCTGAGGGAGATTACGAGGCTTAACTGTAACCACTATAGCTGTGACATAATATTCAGATTATTACAGGGAGTTGTTTGCATGTCCTATAGGAATTATATCCCCCTTTTGACAAAGATTATTAGTGTCCTGTCTTTTTTTCTTTTGCTTTTTTGTTTTGGTGAGCATGGGATATTTTATTCTGGATTAAATTTAGTTTGTGGTTAAAGCTGGTGTAAAGTATCAAACAGGAATAGTGTTATCGGGTTGTTTGA</gDNA_template>
            <first_frame> T  A  K  L  I  S  S  P  S  F  V  L  K  R  K  I  R  V  K  T  *  W  N  D  A  G  I  *  R  *  W  R  R  Y  R  E  *  W  F  F  S  L  Q  *  L  Q  V  S   : A  Y  F  S  *  P  R  E  R  K  G  L  I  K  K  Q  G  E  G  E  G  E  R  A  *  *  R  P  G  Q  G  Q  E  *  R  *  R  *  R  Q  G  Q  R  *  G  K  G  Q  R  *  G  *  G  Q  R  E  G  E  G  P  *  S  S  S  Q  R  S  S  *  G  S  E  *  *  E  G  E  D  Q  R  S  R  *  R  *  S  S  A  N  S  R  L  R  *  :  A  K  R  Q  *  Q  R  *  R  G  P  T  E  T  Q  A  *  L  *  G  *  I  R  A  *  I  K  V  *  I  T  V  T  I  *  E  :  Q  K  D  Q  W  F  *  Y  G  T  S  H  Q  C  I  A  I  W  R  Y  *  C  C  R :   S  S  S  W  D  H  *  P  I  N  T  W  N  V  F  *  H  V  S  S  S  S  R  P   : V  W  S  S  P  Y  Y  A  S  P  G  N  D  T  A   : G  Y  Q  T  C  S  A  S  L  C  W  W  T  S  A  Y  C  K  *  T   : V  G  C  Y  L  L  *  S  C  H  V  C  N  R  R  K  Y  C  W  S  R :   G  C  C  C  Q  R  L  Y  K  P  *  E  E  V  C  L  C  *  N  E  I  C  *  G  S  *  *  C  N  G  F  G  W  C  H  F  *   : G  R  T  G  *  G  *  K  T  Q  *  L  Q  S  F  L  G  S  Y  T  W  S  *  S  T  E  P  Q  P  Q  P  G  S  C  W  I  D  T  R  F  F  R  R  A  *  R  T  *  P  Y  I  C  W  W  F  T  L  L  F  Y  R  I  T  N  Q  G  T  F  R  V  F  W  S  T  S  R  I  *  S  G  Q  R  *  R  N  W  E  F  K  R  L  C  F  L  C  V  P  G  C  L  C  Y  *  Y  C  L  C  S  S  *  W  D  *  D  G  G  *  N  S  Y  C  *  A  G  *  P  G  H  N  P  T  Q  P  *  A  R  E  C  I  V  A  C  T  T  A  D  S  F  A   : E  V  H  V  T  T  W  C  I  S  H  K  G  F  V  L  D  R  S  G  *  R  R  *  A  Q  R  *  *  *  L  S  R  Y  F  G  R  Y  E  D  *  M  W  *  I  W :   S  S  P  E  C  C  H  S  T  S  K  S  *  W  R  A  Y  T  W  T  R  E   : G  I  P  G  V  C  R  C  *  Q  F  Q  Q  S  S  P  R  A  E  W  K  K  I  W  W  *  P  S  Y  C  C  L  L  S  R  E  Q  V  L  *  G  R  L  R  G  L  T  V  T  T  I  A  V  T  *  Y  S  D  Y  Y  R  E  L  F  A  C  P  I  G  I  I  S  P  F  *  Q  R  L  L  V  S  C  L  F  F  F  C  F  F  V  L  V  S  M  G  Y  F  I  L  D  *  I  *  F  V  V  K  A  G  V  K  Y  Q  T  G  I  V  L  S  G  C  L  </first_frame>
            <second_frame>  R  Q  N  S  F  L  A  L  V  L  Y  *  R  E  K  L  G  *  K  R  S  G  T  M  Q  E  Y  E  G  N  G  E  D  I  E  N  N  G  S  S  P  Y  S  D  S  K  S  Q  :  H  T  S  R  D  P  E  K  E  R  G  S  S  R  S  R  E  K  E  R  E  K  G  R  D  K  D  R  D  R  D  R  N  R  D  R  D  R  D  R  D  R  G  K  E  R  D  K  D  R  D  R  D  R  E  R  E  K  D  R  D  R  H  H  R  D  R  H  R  D  R  S  D  R  R  E  R  I  R  D  R  D  E  D  D  L  Q  R  T  R  D  Y  D  R :   R  R  D  N  D  K  D  R  E  D  R  Q  R  H  K  P  S  S  R  G  R  S  E  H  R  S  R  S  R  S  R  S  P  S  K  S :   K  R  I  S  G  F  D  M  A  P  P  T  S  A  L  L  S  G  A  T  D  V  A   : G  Q  V  P  G  T  T  N  P  S  I  P  G  M  F  S  N  M  F  P  L  A  A  G  Q  :  F  G  A  L  P  I  M  P  V  Q  A  M  T  Q  Q  :  A  T  R  H  A  R  R  V  Y  V  G  G  L  P  P  T  A  N  E  Q  :  S  V  A  T  F  F  S  H  V  M  Y  A  I  G  G  N  T  A  G  P   : G  D  A  V  V  N  V  Y  I  N  H  E  K  K  F  A  F  V  E  M  R  S  V  E  E  A  S  N  A  M  A  L  D  G  V  I  F  E  :  G  G  P  V  K  V  R  R  P  S  D  Y  N  P  S  L  A  A  T  L  G  P  S  Q  P  S  P  N  L  N  L  A  A  V  G  L  T  P  G  S  S  G  G  L  E  G  P  D  R  I  F  V  G  G  L  P  Y  Y  F  T  E  S  Q  I  R  E  L  L  E  S  F  G  Q  L  R  G  F  D  L  V  K  D  R  E  T  G  N  S  K  G  Y  A  F  C  V  Y  Q  D  V  S  V  T  D  I  A  C  A  A  L  N  G  I  K  M  G  D  K  T  L  T  V  R  R  A  N  Q  G  T  T  Q  P  N  P  E  Q  E  S  V  L  L  H  A  Q  Q  Q  I  A  L  Q  :  R  F  M  L  Q  P  G  A  L  A  T  K  V  L  C  L  T  E  V  V  S  V  D  E  L  K  D  D  D  D  Y  Q  D  I  L  E  D  M  R  I  E  C  G  K  F   : G  A  L  L  N  V  V  I  P  R  P  N  P  N  G  E  P  T  P  G  L  G  K  :  V  F  L  E  Y  A  D  V  D  S  S  S  K  A  R  Q  G  L  N  G  R  K  F  G  G  N  Q  V  I  A  V  F  Y  P  E  N  K  F  S  E  G  D  Y  E  A  *  L  *  P  L  *  L  *  H  N  I  Q  I  I  T  G  S  C  L  H  V  L  *  E  L  Y  P  P  F  D  K  D  Y  *  C  P  V  F  F  S  F  A  F  L  F  W  *  A  W  D  I  L  F  W  I  K  F  S  L  W  L  K  L  V  *  S  I  K  Q  E  *  C  Y  R  V  V  * </second_frame>
            <third_frame>   G  K  T  H  F  *  P  *  F  C  T  E  E  K  N  *  G  K  N  V  V  E  R  C  R  N  M  K  V  M  E  K  I  *  R  I  M  V  L  L  L  T  V  T  P  S  L  S :   I  L  L  V  T  P  R  K  K  G  A  H  Q  E  A  G  R  R  R  G  R  K  G  V  I  K  T  G  T  G  T  G  I  E  I  E  I  E  T  G  T  E  V  R  K  G  T  K  I  G  I  G  T  E  R  G  R  R  T  V  I  V  I  T  E  I  V  I  G  I  G  V  I  G  G  R  G  S  E  I  E  M  K  M  I  F  S  E  L  E  I  T  I   : G  E  E  T  M  T  K  I  E  R  T  D  R  D  T  S  L  A  L  G  V  D  P  S  I  D  Q  G  L  D  H  G  H  H  L  R   : A  K  G  S  V  V  L  I  W  H  L  P  P  V  H  C  Y  L  A  L  L  M  L  Q  :  V  K  F  L  G  P  L  T  H  Q  Y  L  E  C  F  L  T  C  F  L  *  Q  Q  A  S :   L  E  L  S  L  L  C  Q  S  R  Q  *  H  S  R :   L  P  D  M  L  G  E  F  M  L  V  D  F  R  L  L  Q  M  N  S :   R  L  L  P  S  L  V  M  S  C  M  Q  S  E  E  I  L  L  V  Q  :  G  M  L  L  S  T  F  I  *  T  M  R  R  S  L  P  L  L  K  *  D  L  L  R  K  L  V  M  Q  W  L  W  M  V  S  F  L  R :   A  D  R  L  R  L  E  D  P  V  I  T  I  L  P  W  Q  L  H  L  V  L  V  N  R  A  P  T  S  T  W  Q  L  L  D  *  H  Q  V  L  P  E  G  L  K  D  L  T  V  Y  L  L  V  V  Y  P  I  I  L  Q  N  H  K  S  G  N  F  *  S  L  L  V  N  F  E  D  L  I  W  S  K  I  E  K  L  G  I  Q  K  V  M  L  F  V  C  T  R  M  S  L  L  L  I  L  L  V  Q  L  L  M  G  L  R  W  G  I  K  L  L  L  L  G  G  L  T  R  A  Q  P  N  P  T  L  S  K  R  V  Y  C  C  M  H  N  S  R  *  L  C  R :   G  S  C  Y  N  L  V  H  *  P  Q  R  F  C  A  *  Q  K  W  L  A  *  M  S  S  K  M  M  M  T  I  K  I  F  W  K  I  *  G  L  N  V  V  N  L  :  E  L  S  *  M  L  S  F  H  V  Q  I  L  M  A  S  L  H  L  D  S  G  R :   Y  S  W  S  M  Q  M  L  T  V  P  A  K  L  A  K  G  *  M  E  E  N  L  V  V  T  K  L  L  L  S  S  I  Q  R  T  S  S  L  R  E  I  T  R  L  N  C  N  H  Y  S  C  D  I  I  F  R  L  L  Q  G  V  V  C  M  S  Y  R  N  Y  I  P  L  L  T  K  I  I  S  V  L  S  F  F  L  L  L  F  C  F  G  E  H  G  I  F  Y  S  G  L  N  L  V  C  G  *  S  W  C  K  V  S  N  R  N  S  V  I  G  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160227" stop="160316"/>
                    <exon start="160993" stop="161273"/>
                    <exon start="161564" stop="161671"/>
                    <exon start="162327" stop="162397"/>
                    <exon start="163007" stop="163080"/>
                    <exon start="163158" stop="163202"/>
                    <exon start="163289" stop="163348"/>
                    <exon start="164063" stop="164123"/>
                    <exon start="164212" stop="164324"/>
                    <exon start="164677" stop="165123"/>
                    <exon start="165230" stop="165365"/>
                    <exon start="165470" stop="165537"/>
                    <exon start="165842" stop="165979"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1689</number_coding_nucleotides>
                  <number_encoded_amino_acids>563</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSGTMQEYEGNGEDIENNGSSPYSDSKSQHTSRDPEKERGSSRSREKEREKGRDKDRDRDRNRDRDRDRDRGKERDKDRDRDREREKDRDRHHRDRHRDRSDRRERIRDRDEDDLQRTRDYDRRRDNDKDREDRQRHKPSSRGRSEHRSRSRSRSPSKSKRISGFDMAPPTSALLSGATDVAGQVPGTTNPSIPGMFSNMFPLAAGQFGALPIMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVSVDELKDDDDYQDILEDMRIECGKFGALLNVVIPRPNPNGEPTPGLGKVFLEYADVDSSSKARQGLNGRKFGGNQVIAVFYPENKFSEGDYEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="162339" e_stop="162397"/>
            <exon e_start="163007" e_stop="163202"/>
            <exon e_start="163289" e_stop="163348"/>
            <exon e_start="164063" e_stop="164123"/>
            <exon e_start="164212" e_stop="164324"/>
            <exon e_start="164677" e_stop="164918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.983"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="162339" e_stop="162397" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="162398" i_stop="163006" i_length="609"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="163007" e_stop="163202" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="163203" i_stop="163288" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="163289" e_stop="163348" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="163349" i_stop="164062" i_length="714"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="164063" e_stop="164123" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="164124" i_stop="164211" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="164212" e_stop="164324" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="164325" i_stop="164676" i_length="352"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="164677" e_stop="164918" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162339" stop="162397"/>
              <exon start="163007" stop="163202"/>
              <exon start="163289" stop="163348"/>
              <exon start="164063" stop="164123"/>
              <exon start="164212" stop="164324"/>
              <exon start="164677" stop="164918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTTTTGATATGGCACCTCCCACCAGTGCATTGCTATCTGGCGCTACTGATGTTGCAG : GTCAAGTTCCTGGGACCACTAACCCATCAATACCTGGAATGTTTTCTAACATGTTTCCTCTAGCAGCAGGCCAGGTACTGTGACAGATCCTTCTTAGCATACCTTCACTGGTTATCTATATTCTCATATATTTGTTTTGTGGCTTCTCTAGTTTGGAGCTCTCCCTATTATGCCAGTCCAGGCAATGACACAGCAG : GCTACCAGACATGCTCGGCGAGTTTATGTTGGTGGACTTCCGCCTACTGCAAATGAACAG : TCGGTTGCTACCTTCTTTAGTCATGTCATGTATGCAATCGGAGGAAATACTGCTGGTCCAG : GGGATGCTGTTGTCAACGTTTATATAAACCATGAGAAGAAGTTTGCCTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGTAATGCAATGGCTTTGGATGGTGTCATTTTTGAG : GGCGGACCGGTTAAGGTTAGAAGACCCAGTGATTACAATCCTTCCTTGGCAGCTACACTTGGTCCTAGTCAACCGAGCCCCAACCTCAACCTGGCAGCTGTTGGATTGACACCAGGTTCTTCCGGAGGGCTTGAAGGACCTGACCGTATATTTGTTGGTGGTTTACCCTATTATTTTACAGAATCACAAATCAGGGAACTTTTAGAGTCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAA</gDNA_template>
            <first_frame> W  F  *  Y  G  T  S  H  Q  C  I  A  I  W  R  Y  *  C  C  R :   S  S  S  W  D  H  *  P  I  N  T  W  N  V  F  *  H  V  S  S  S  S  R  P  G  T  V  T  D  P  S  *  H  T  F  T  G  Y  L  Y  S  H  I  F  V  L  W  L  L  *  F  G  A  L  P  I  M  P  V  Q  A  M  T  Q  Q  :  A  T  R  H  A  R  R  V  Y  V  G  G  L  P  P  T  A  N  E  Q  :  S  V  A  T  F  F  S  H  V  M  Y  A  I  G  G  N  T  A  G  P   : G  D  A  V  V  N  V  Y  I  N  H  E  K  K  F  A  F  V  E  M  R  S  V  E  E  A  S  N  A  M  A  L  D  G  V  I  F  E  :  G  G  P  V  K  V  R  R  P  S  D  Y  N  P  S  L  A  A  T  L  G  P  S  Q  P  S  P  N  L  N  L  A  A  V  G  L  T  P  G  S  S  G  G  L  E  G  P  D  R  I  F  V  G  G  L  P  Y  Y  F  T  E  S  Q  I  R  E  L  L  E  S  F  G  Q  L  R  G  F  D  L  V   </first_frame>
            <second_frame>  G  F  D  M  A  P  P  T  S  A  L  L  S  G  A  T  D  V  A   : G  Q  V  P  G  T  T  N  P  S  I  P  G  M  F  S  N  M  F  P  L  A  A  G  Q  V  L  *  Q  I  L  L  S  I  P  S  L  V  I  Y  I  L  I  Y  L  F  C  G  F  S  S  L  E  L  S  L  L  C  Q  S  R  Q  *  H  S  R :   L  P  D  M  L  G  E  F  M  L  V  D  F  R  L  L  Q  M  N  S :   R  L  L  P  S  L  V  M  S  C  M  Q  S  E  E  I  L  L  V  Q  :  G  M  L  L  S  T  F  I  *  T  M  R  R  S  L  P  L  L  K  *  D  L  L  R  K  L  V  M  Q  W  L  W  M  V  S  F  L  R :   A  D  R  L  R  L  E  D  P  V  I  T  I  L  P  W  Q  L  H  L  V  L  V  N  R  A  P  T  S  T  W  Q  L  L  D  *  H  Q  V  L  P  E  G  L  K  D  L  T  V  Y  L  L  V  V  Y  P  I  I  L  Q  N  H  K  S  G  N  F  *  S  L  L  V  N  F  E  D  L  I  W  S  </second_frame>
            <third_frame>   V  L  I  W  H  L  P  P  V  H  C  Y  L  A  L  L  M  L  Q  :  V  K  F  L  G  P  L  T  H  Q  Y  L  E  C  F  L  T  C  F  L  *  Q  Q  A  R  Y  C  D  R  S  F  L  A  Y  L  H  W  L  S  I  F  S  Y  I  C  F  V  A  S  L  V  W  S  S  P  Y  Y  A  S  P  G  N  D  T  A   : G  Y  Q  T  C  S  A  S  L  C  W  W  T  S  A  Y  C  K  *  T   : V  G  C  Y  L  L  *  S  C  H  V  C  N  R  R  K  Y  C  W  S  R :   G  C  C  C  Q  R  L  Y  K  P  *  E  E  V  C  L  C  *  N  E  I  C  *  G  S  *  *  C  N  G  F  G  W  C  H  F  *   : G  R  T  G  *  G  *  K  T  Q  *  L  Q  S  F  L  G  S  Y  T  W  S  *  S  T  E  P  Q  P  Q  P  G  S  C  W  I  D  T  R  F  F  R  R  A  *  R  T  *  P  Y  I  C  W  W  F  T  L  L  F  Y  R  I  T  N  Q  G  T  F  R  V  F  W  S  T  S  R  I  *  S  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="163158" stop="163202"/>
                    <exon start="163289" stop="163348"/>
                    <exon start="164063" stop="164123"/>
                    <exon start="164212" stop="164324"/>
                    <exon start="164677" stop="164916"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGALPIMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="+" PGL_start="170740" PGL_stop="171543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="170740" e_stop="171341"/>
            <exon e_start="171400" e_stop="171543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="170740" e_stop="171341" e_length="602"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="171342" i_stop="171399" i_length="58"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="171400" e_stop="171543" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="170740" stop="171341"/>
              <exon start="171400" stop="171543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACTTTTTTTGCGGTCTCTGTTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCCAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAG : ATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTGGCGACGAACAGATTTGTTTGTGAAATTTGTAGTAAAGGGTTTCAAAGAGACCAGAATTTGCAGCTTC</gDNA_template>
            <first_frame> R  L  F  L  R  S  L  F  S  H  *  I  S  S  L  S  L  Y  *  F  P  S  R  R  L  A  L  S  Q  L  L  L  I  F  I  E  F  F  F  I  T  F  T  Y  K  Q  T  H  L  L  E  L  S  D  F  P  G  R  K  F  T  P  V  I  D  F  L  V  I  L  E  S  G  F  F  S  *  F  L  C  Y  G  D  L  L  F  *  L  G  L  I  K  T  G  S  W  V  Y  E  R  K  K  N  E  K  A  R  L  T  G  R  Y  G  E  K  R  E  S  I  D  S  P  K  K  R  L  I  S  K  R  F  F  *  H  K  C  S  K  D  L  L  F  *  A  T  P  P  P  Q  K  K  K  K  K  H  A  G  R  P  R  *  L  I  R  H  E  R  F  Y  R  L  R  *  S  K  R  F  V  F  R  *  S  S  S  S  S  E  R  I  S  Q  E  E  T  E  S  S  W  D  A  R :   F  D  F  L  F  L  V  A  L  I  R  S  R  C  R  G  Y  C  F  V  T  N  N  F  A  G  D  E  Q  I  C  L  *  N  L  *  *  R  V  S  K  R  P  E  F  A  A   </first_frame>
            <second_frame>  D  F  F  C  G  L  C  F  H  I  K  F  P  L  F  L  S  I  D  F  R  A  A  D  L  R  C  H  N  C  F  S  F  S  S  S  F  S  S  L  L  L  L  I  S  K  P  I  Y  S  N  L  A  T  F  P  A  E  S  S  R  R  *  L  T  F  W  *  F  W  N  L  G  F  S  A  N  F  Y  V  M  G  I  C  Y  F  S  L  V  *  S  K  L  V  V  G  C  M  K  E  R  K  T  K  K  Q  D  *  L  V  D  T  A  K  R  E  K  V  L  T  P  P  R  K  D  *  Y  Q  K  G  F  F  N  I  N  V  L  K  I  C  F  F  E  Q  P  P  P  P  K  K  K  K  K  N  M  P  A  D  P  D  N  S  S  A  M  N  D  S  T  G  S  G  E  A  S  V  S  S  S  G  N  Q  V  V  P  L  K  E  S  A  K  K  K  R  N  L  P  G  M  P   : D  L  I  F  C  F  W  L  L  *  L  D  P  D  A  E  V  I  A  L  S  P  T  T  L  L  A  T  N  R  F  V  C  E  I  C  S  K  G  F  Q  R  D  Q  N  L  Q  L  </second_frame>
            <third_frame>   T  F  F  A  V  S  V  F  T  L  N  F  L  S  F  S  L  L  I  S  E  P  P  T  C  V  V  T  T  A  S  H  F  H  R  V  F  L  H  Y  F  Y  L  *  A  N  P  F  T  R  T  *  R  L  S  R  Q  K  V  H  A  G  D  *  L  S  G  D  F  G  I  W  V  F  Q  L  I  S  M  L  W  G  F  A  I  L  A  W  F  D  Q  N  W  *  L  G  V  *  K  K  E  K  R  K  S  K  I  D  W  *  I  R  R  K  E  R  K  Y  *  L  P  Q  E  K  I  D  I  K  K  V  F  L  T  *  M  F  *  R  F  A  F  L  S  N  P  P  P  P  K  K  K  K  K  T  C  R  P  T  Q  I  T  H  P  P  *  T  I  L  Q  A  Q  V  K  Q  A  F  R  L  Q  V  I  K  *  F  L  *  K  N  Q  P  R  R  N  G  I  F  L  G  C  Q  :  I  *  F  S  V  F  G  C  F  D  *  I  P  M  Q  R  L  L  L  C  H  Q  Q  L  C  W  R  R  T  D  L  F  V  K  F  V  V  K  G  F  K  E  T  R  I  C  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="171119" stop="171341"/>
                    <exon start="171400" stop="171428"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQKGFFNINVLKICFFEQPPPPKKKKKNMPADPDNSSAMNDSTGSGEASVSSSGNQVVPLKESAKKKRNLPGMPDLIFCFWLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="172140" PGL_stop="173851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="172140" e_stop="172186"/>
            <exon e_start="172649" e_stop="173851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="0.979"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="172140" e_stop="172186" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="172187" i_stop="172648" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="172649" e_stop="173851" e_length="1203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="172140" stop="172186"/>
              <exon start="172649" stop="173851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAG : AATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATGTCCTCCACGTCATCTTCAAACGGTCATCAAGAATGGAGTGGGAGACCCAGTGATGCCAATGGTGCATCATTAGCTGCAGGTCTTGGTCTTGGACTACCGTGTGACGCTGGTTCTGGTCTAAAGGAATTAATGTTGGGAACTCCCTCGGTGTTTGGTCCCAAACATCCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAA</gDNA_template>
            <first_frame> T  V  N  C  R  N  V  I  C  F  L  R  S  K  S  R :   I  A  G  E  S  S  H  K  F  C  W  S  C  Y  E  A  S  C  G  G  S  S  S  G  S  K  L  D  W  K  L  *  Q  L  L  *  *  W  K  *  *  Q  Q  C  L  W  K  F  V  C  F  I  N  S  F  G  K  S  A  I  S  S  S  C  F  F  *  Y  I  S  S  H  G  A  *  A  H  S  *  D  G  T  T  F  I  Y  R  T  N  I  S  R  P  S  D  E  S  Q  F  V  N  F  *  T  S  W  S  R  T  E  A  I  C  S  R  T  T  T  S  Y  V  G  N  S  I  T  A  E  G  S  S  D  G  C  S  S  N  Q  L  I  V  L  E  G  H  W  G  Y  V  L  H  V  I  F  K  R  S  S  R  M  E  W  E  T  Q  *  C  Q  W  C  I  I  S  C  R  S  W  S  W  T  T  V  *  R  W  F  W  S  K  G  I  N  V  G  N  S  L  G  V  W  S  Q  T  S  H  S  *  P  P  W  I  R  N  G  S  *  C  R  S  I  A  W  I  I  C  P  F  N  I  H  G  *  Q  S  *  H  G  D  F  S  W  I  I  W  *  C  R  F  Q  W  E  R  L  G  K  K  F  M  I  S  *  S  Q  V  *  F  I  L  Y  R  T  M  N  F  T  *  C  S  K  K  H  I  G  K  L  S  A  P  K  I  *  A  *  D  G  R  R  K  E  G  S  W  T  L  L  R  L  F  Y  C  L  L  C  V  G  K  V  E  R  F  F  F  C  C  T  V  E  V  E  C  I  A  V  L  K  L  L  C  F  L  L  Q  M  K  L  L  M  C  L  V  Y  N  L  L  *  A  Y  L  T  K  R  G  S  S  S  G  N  F  Y  Q  M  V  S  L  F  Q  T  V  Q  I  F  I  K  F  V  *  F  R  C  I  T  N  A  A  V  L  N  S  L  S   </first_frame>
            <second_frame>  P  S  T  A  V  M  S  F  A  S  S  V  Q  N  R   : E  L  R  E  N  P  V  T  N  S  A  G  A  A  T  K  Q  V  V  E  E  A  A  V  V  A  S  L  T  G  N  C  S  S  S  C  S  N  G  S  S  S  S  N  V  F  G  S  L  F  A  S  S  T  A  S  G  S  L  P  S  Q  A  P  V  F  S  D  I  F  R  A  M  A  P  E  H  T  L  E  M  A  P  P  S  S  T  E  P  I  S  L  G  L  A  M  S  H  S  S  S  I  F  R  P  A  G  Q  E  R  R  Q  Y  A  P  A  P  Q  P  A  M  S  A  T  A  L  L  Q  K  A  A  Q  M  G  A  A  A  T  S  S  S  F  L  R  G  I  G  V  M  S  S  T  S  S  S  N  G  H  Q  E  W  S  G  R  P  S  D  A  N  G  A  S  L  A  A  G  L  G  L  G  L  P  C  D  A  G  S  G  L  K  E  L  M  L  G  T  P  S  V  F  G  P  K  H  P  T  L  D  L  L  G  L  G  M  A  A  S  V  G  P  S  P  G  L  S  A  L  L  T  S  M  G  S  N  L  D  M  V  T  S  A  G  S  F  G  S  A  D  F  S  G  K  D  L  G  R  N  S  *  Y  L  R  V  R  F  N  L  F  C  I  G  Q  *  I  S  L  D  A  A  K  N  I  L  A  S  S  Q  P  Q  R  F  E  H  R  M  A  G  G  K  K  A  V  G  H  F  *  D  C  S  T  V  S  F  V  *  E  K  *  K  G  F  F  S  A  V  Q  *  K  L  N  V  *  L  Y  *  N  S  S  A  F  C  Y  R  *  S  C  *  C  V  *  Y  I  I  C  Y  K  H  I  *  P  R  E  A  H  L  V  G  I  F  I  K  W  Y  L  Y  F  R  Q  C  K  F  L  *  N  L  Y  N  S  D  A  *  L  M  Q  Q  C  *  T  L  *  A  </second_frame>
            <third_frame>   R  Q  L  P  *  C  H  L  L  P  P  F  K  I  E  :  N  C  G  R  I  Q  S  Q  I  L  L  E  L  L  R  S  K  L  W  R  K  Q  Q  W  *  Q  A  *  L  E  T  V  A  A  L  V  V  M  E  V  V  A  A  M  S  L  E  V  C  L  L  H  Q  Q  L  R  E  V  C  H  L  K  L  L  F  F  L  I  Y  F  E  P  W  R  L  S  T  L  L  R  W  H  H  L  H  L  Q  N  Q  Y  L  S  A  *  R  *  V  T  V  R  Q  F  L  D  Q  L  V  K  N  G  G  N  M  L  P  H  H  N  Q  L  C  R  Q  Q  H  Y  C  R  R  Q  L  R  W  V  Q  Q  Q  P  A  H  R  S  *  G  A  L  G  L  C  P  P  R  H  L  Q  T  V  I  K  N  G  V  G  D  P  V  M  P  M  V  H  H  *  L  Q  V  L  V  L  D  Y  R  V  T  L  V  L  V  *  R  N  *  C  W  E  L  P  R  C  L  V  P  N  I  P  L  L  T  S  L  D  *  E  W  Q  L  V  S  V  H  R  L  D  Y  L  P  F  *  H  P  W  V  A  I  L  T  W  *  L  Q  L  D  H  L  V  V  Q  I  S  V  G  K  T  W  E  E  I  H  D  I  L  E  S  G  L  I  Y  S  V  *  D  N  E  F  H  L  M  Q  Q  K  T  Y  W  Q  A  L  S  P  K  D  L  S  I  G  W  Q  E  E  R  R  Q  L  D  T  F  K  I  V  L  L  S  P  L  C  R  K  S  R  K  V  F  F  L  L  Y  S  R  S  *  M  Y  S  C  I  K  T  P  L  L  F  V  T  D  E  A  V  N  V  F  S  I  *  F  A  I  S  I  F  N  Q  E  R  L  I  *  W  E  F  L  S  N  G  I  S  I  S  D  S  A  N  F  Y  K  I  C  I  I  Q  M  H  N  *  C  S  S  V  K  L  F  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="+"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="172141" stop="172186"/>
                    <exon start="172649" stop="173424"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTAVMSFASSVQNRELRENPVTNSAGAATKQVVEEAAVVASLTGNCSSSCSNGSSSSNVFGSLFASSTASGSLPSQAPVFSDIFRAMAPEHTLEMAPPSSTEPISLGLAMSHSSSIFRPAGQERRQYAPAPQPAMSATALLQKAAQMGAAATSSSFLRGIGVMSSTSSSNGHQEWSGRPSDANGASLAAGLGLGLPCDAGSGLKELMLGTPSVFGPKHPTLDLLGLGMAASVGPSPGLSALLTSMGSNLDMVTSAGSFGSADFSGKDLGRNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="-" PGL_start="178276" PGL_stop="177515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="178276" e_stop="177515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="178276" e_stop="177515" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="178276" stop="177515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</gDNA_template>
            <first_frame> T  K  R  G  R  A  S  K  E  R  R  G  R  S  R  K  K  K  A  G  G  G  R  I  K  E  R  G  E  S  K  K  K  A  T  G  G  S  K  E  E  R  G  G  R  S  S  K  K  A  T  *  G  R  S  R  E  R  G  R  G  S  K  K  D  R  G  G  R  S  T  K  R  G  R  R  S  K  E  N  T  T  G  G  R  S  R  E  S  K  E  K  R  R  R  S  R  N  K  K  E  G  G  G  G  G  R  I  K  E  T  R  G  G  I  K  E  E  *  R  R  G  S  K  R  G  R  E  G  K  A  R  G  S  *  K  T  R  R  S  *  E  T  G  G  R  N  R  R  E  A  S  T  R  R  N  R  G  R  G  A  R  P  T  *  N  E  R  I  F  L  K  L  A  Y  E  C  V  V  *  L  V  Y  S  A  S  S  Q  E  L  N  S  L  Y  V  F  V  *  S  H  V  C  V  R  L  F  I  Y  F  C  C  H  I  Y  E  F  M  *  *  H  R  N  K  F  S  *  I  T  F  P  W  Q  V  S  S  N  V  A  E  G  V  R  M  L  S  G  *  K  Q  F  I  H  L  N </first_frame>
            <second_frame>  Q  R  E  A  E  Q  A  R  R  E  E  E  E  A  E  K  R  R  Q  E  E  E  E  S  R  R  E  E  K  A  R  R  R  Q  Q  E  E  A  R  R  R  E  E  E  E  A  A  K  R  Q  H  E  E  E  A  E  R  E  A  E  E  A  R  R  I  E  E  E  E  A  Q  R  E  A  E  E  A  R  R  I  Q  Q  E  E  E  A  E  R  A  R  R  R  E  E  E  A  E  T  R  R  K  E  E  E  E  E  E  S  R  R  Q  E  E  E  S  R  R  S  E  E  E  A  A  R  E  A  E  R  E  R  Q  E  E  A  E  R  Q  E  E  A  R  R  R  E  E  E  T  E  E  R  H  Q  Q  E  E  T  E  E  E  E  P  G  Q  P  E  M  N  G  Y  S  S  N  *  P  M  S  V  L  C  N  *  C  T  Q  Q  V  L  R  S  *  I  V  S  T  F  L  Y  N  L  M  C  V  Y  V  F  S  F  T  F  A  V  I  F  M  S  L  C  N  N  T  E  T  S  F  H  R  S  L  F  P  G  K  S  P  A  M  *  Q  K  V  L  G  C  Y  L  D  E  S  S  S  Y  I  *   </second_frame>
            <third_frame>   K  E  R  Q  S  K  Q  G  E  K  R  K  K  Q  K  K  E  G  R  R  R  K  N  Q  G  E  R  R  K  Q  E  E  G  N  R  R  K  Q  G  G  E  R  R  K  K  Q  Q  K  G  N  M  R  K  K  Q  R  E  R  Q  R  K  Q  E  G  *  R  R  K  K  H  K  E  R  Q  K  K  Q  G  E  Y  N  R  R  K  K  Q  R  E  Q  G  E  E  K  K  K  Q  K  Q  E  G  R  R  R  R  R  K  N  Q  G  D  K  R  R  N  Q  G  G  V  K  K  R  Q  Q  E  R  Q  R  G  K  G  K  R  K  L  K  D  K  K  K  L  G  D  G  R  K  K  Q  K  R  G  I  N  K  K  K  P  R  K  R  S  Q  A  N  L  K  *  T  D  I  P  Q  T  S  L  *  V  C  C  V  T  S  V  L  S  K  F  S  G  A  E  *  S  L  R  F  C  I  I  S  C  V  C  T  S  F  H  L  L  L  L  S  Y  L  *  V  Y  V  I  T  P  K  Q  V  F  I  D  H  F  S  L  A  S  L  Q  Q  C  S  R  R  C  *  D  V  I  W  M  K  A  V  H  T  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0128E12.1" strand="-"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="178275" stop="177757"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREAEQARREEEEAEKRRQEEEESRREEKARRRQQEEARRREEEEAAKRQHEEEAEREAEEARRIEEEEAQREAEEARRIQQEEEAERARRREEEAETRRKEEEEEESRRQEEESRRSEEEAAREAERERQEEAERQEEARRREEETEERHQQEETEEEEPGQPEMNGYSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 71 chains have been computed
$ 
$ memory statistics:
$ 97344 bytes spliced alignments in total
$ 44 spliced alignments have been stored
$ 2212 bytes was the average size of a spliced alignment
$ 43848 bytes predicted gene locations in total
$ 30 predicted gene locations have been stored
$ 1461 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 76 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 12:08:31
-->
