<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:52:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201337" ref_strand="+" ref_description="SGN-E201337 [cLEC-4-C22]">
      <seq>gtgtattggtggtgaaggctaacatttcatttactcatcaaaaggcactatcaattgatttagacacgctaattgacatgagttgttgcttctttggcgaccggaaaaagggtcatgatctcgttcaccatgatacaagagatgcaggaggtgactccattgcaagcacaaagaatttttcatttaatgaattaagattagcaaccaacaacttccatcaaattaataaaataaggcgaggcggttttggcacagtatacaagggaactctaaaacaaggaaaagatgttgctgtgaagacactagcagcataatcaaggcagggtttgcgggagtttttgacagaaattgagacaatatcaaatgtcaaacatccaaatctagttgagataattggatgctgtgctgatggaaataaccggattttggtctatgaatatttagaaaataaaagccttgatcgggcactgtttggttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="8679" stop="10196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8979" g_stop="9128" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9129" i_stop="9312" i_length="184">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9313" g_stop="9425" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="263" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9426" i_stop="9683" i_length="258">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9684" g_stop="9894" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="474" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9895" i_stop="9975" i_length="81">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9976" g_stop="9981" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="480" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E201337" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8979" e_stop="9128"/>
          <exon e_start="9313" e_stop="9425"/>
          <exon e_start="9684" e_stop="9894"/>
          <exon e_start="9976" e_stop="9981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAGGTTAGTGGGAACTGGGATGTTTTTCTGTTTTTTCAGAGGACTTGTTTGCAACTTTATGCCATTGGAGATGCATTGCGCATTTGGTTGTAGATCATCTTCAACCTAGGCATAAGTAATGCCAGTGCAAATGCTGTCTTGAGTAAATTCAATTCATATACCATAACTATCTTTATATATCTGGCAGGTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAGGTACAGCTCTACTCAACGAATACGTCTCATGCTTTTTCATGCAGCAGTTTTGTGCATTGGACAACTTATTTTTGTGTCTTTTGCATAGTTCTGTTTAAAGTGTTACATTCTTGGATGTTATGGTTTAGTTCAAGTTATAGTAGTAGTAGGCAGATTTTTGAAATTCTCAGGAAATCTGCATTACTAACTTCATATTTTGTTATTAGATTTTCATTATTATCTCCCCTTTAATGGAGTTGTGTAATACGGTAATTGCAGGGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTGGTAATGGCCGAACTTCTGGTAAAATAAAGGATTAACTTGAGAATTATGGAATGGCTGATAATGGTATTTTTTACTTTGCAGGTTCAA</genome_strand>
        <mrna_strand>GTGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG........................................................................................................................................................................................GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAAGGCGAGGCGGTTTTGGCACAGTATACAAG..................................................................................................................................................................................................................................................................GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCATAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAAAAGCCTTGATCGGGCACTGTTTG.................................................................................GTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379303" ref_strand="+" ref_description="SGN-E379303 [TUS-1-E3]">
      <seq>aagcagtgtattggtggtgaaggctaacatttcatttactcatcaaaaggcactatcaattgatttagacacgctaattgacatgagttgttgcttctttggcgaccggaaaaagggtcatgatctcgttcaccatgatacaagagatgcaggaggtgactccattgcaagcacaaagaatttttcatttaatgaattaagattagcaaccaacaacttccatcaaattaataaaatagggcgaggcggttttggcacagtatacaagggaactctaaaacaaggaaaagatgttgctgtgaagacactagcagcagaatcaaggcagggtttgcgggagtttttgacagaaattgagacaatatcaaatgtcaaacatccaaatctagttgagataattggatgctgtgctgatggaaataaccggattttggtctatgaatatttagaaaatagaagccttgatcgggcactgtttggttcaaggactagtattaagttagaatgggaaaaaggactactatttgcttgggtactgctcgaggtcttgcatatctacatgaagaactagtgccacatatagtgcacagggatataaaagctagtaatattctgcttgacagggatatacaccaaaaattggagattttgggcttgctaaacttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="8677" stop="10467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8980" g_stop="9128" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="155" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9129" i_stop="9312" i_length="184">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9313" g_stop="9425" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="268" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9426" i_stop="9683" i_length="258">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9684" g_stop="9894" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="479" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9895" i_stop="9975" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9976" g_stop="10167" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="669" r_length="190" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E379303" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8980" e_stop="9128"/>
          <exon e_start="9313" e_stop="9425"/>
          <exon e_start="9684" e_stop="9894"/>
          <exon e_start="9976" e_stop="10167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAGGTTAGTGGGAACTGGGATGTTTTTCTGTTTTTTCAGAGGACTTGTTTGCAACTTTATGCCATTGGAGATGCATTGCGCATTTGGTTGTAGATCATCTTCAACCTAGGCATAAGTAATGCCAGTGCAAATGCTGTCTTGAGTAAATTCAATTCATATACCATAACTATCTTTATATATCTGGCAGGTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAGGTACAGCTCTACTCAACGAATACGTCTCATGCTTTTTCATGCAGCAGTTTTGTGCATTGGACAACTTATTTTTGTGTCTTTTGCATAGTTCTGTTTAAAGTGTTACATTCTTGGATGTTATGGTTTAGTTCAAGTTATAGTAGTAGTAGGCAGATTTTTGAAATTCTCAGGAAATCTGCATTACTAACTTCATATTTTGTTATTAGATTTTCATTATTATCTCCCCTTTAATGGAGTTGTGTAATACGGTAATTGCAGGGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTGGTAATGGCCGAACTTCTGGTAAAATAAAGGATTAACTTGAGAATTATGGAATGGCTGATAATGGTATTTTTTACTTTGCAGGTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAAGGATTATACACCAAAAATTGGAGATTTTGGGCTTGCTAAACTTTTCC</genome_strand>
        <mrna_strand>TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG........................................................................................................................................................................................GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAG..................................................................................................................................................................................................................................................................GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTG.................................................................................GTTCAAGGACTAGTATTAAGTTAGAATGGG-AAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAGGGA-TATACACCAAAAATTGGAGATTTTGGGCTTGCTAAACTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394852" ref_strand="+" ref_description="SGN-E394852 [TUS-43-A19]">
      <seq>aaagcagtgtattggtggtgaaggctaacatttcatttactcatcaaaaggcactatcaattgatttagacacgctaattgacatgagttgttgcttctttggcgaccggaaaaagggtcatgatctcgttcaccatgatacaagagatgcaggaggtgactccattgcaagcacaaagaatttttcatttaatgaattaagattagcaaccaacaacttccatcaaattaataaaatagggcgaggcggttttggcacagtatacaagggaactctaaaacaaggaaaagatgttgctgtgaagacactagcagcagaatcaaggcagggtttgcgggagtttttgacagaaattgagacaatatcaaatgtcaaacatccaaatctagttgagataattggatgctgtgctgatggaaataaccggattttggtctatgaatatttagaaaatagaagccttgatcgggcactgtttggttcaaggactagtattaagttagaatgggaaaaaaggactactatttgcttgggtactgctcgaggtcttgcatatctacatgaagaactagtgccacatatagtgcacagggatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="8677" stop="10394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8980" g_stop="9128" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="156" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9129" i_stop="9312" i_length="184">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9313" g_stop="9425" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="269" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9426" i_stop="9683" i_length="258">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9684" g_stop="9894" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="480" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9895" i_stop="9975" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9976" g_stop="10094" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="599" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E394852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8980" e_stop="9128"/>
          <exon e_start="9313" e_stop="9425"/>
          <exon e_start="9684" e_stop="9894"/>
          <exon e_start="9976" e_stop="10094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAGGTTAGTGGGAACTGGGATGTTTTTCTGTTTTTTCAGAGGACTTGTTTGCAACTTTATGCCATTGGAGATGCATTGCGCATTTGGTTGTAGATCATCTTCAACCTAGGCATAAGTAATGCCAGTGCAAATGCTGTCTTGAGTAAATTCAATTCATATACCATAACTATCTTTATATATCTGGCAGGTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAGGTACAGCTCTACTCAACGAATACGTCTCATGCTTTTTCATGCAGCAGTTTTGTGCATTGGACAACTTATTTTTGTGTCTTTTGCATAGTTCTGTTTAAAGTGTTACATTCTTGGATGTTATGGTTTAGTTCAAGTTATAGTAGTAGTAGGCAGATTTTTGAAATTCTCAGGAAATCTGCATTACTAACTTCATATTTTGTTATTAGATTTTCATTATTATCTCCCCTTTAATGGAGTTGTGTAATACGGTAATTGCAGGGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTGGTAATGGCCGAACTTCTGGTAAAATAAAGGATTAACTTGAGAATTATGGAATGGCTGATAATGGTATTTTTTACTTTGCAGGTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATA</genome_strand>
        <mrna_strand>TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG........................................................................................................................................................................................GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAG..................................................................................................................................................................................................................................................................GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTG.................................................................................GTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379922" ref_strand="+" ref_description="SGN-E379922 [TUS-1-E3](-)">
      <seq>gatgaagaactagatgaattcccggagagagaagtcgtcaggtacatcaagacggctctgttttgcacacaagcaaatgcaaacagaagaccaatgatgagccaggttattgagatgctttcaagagatatccagctaaatgagaaagaacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaaggcgttgtcaaagttcctagacaaaattccagcaatttatgtgtattatttttgtatgacaaacatttttttggaacctgttttttaccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="11850" stop="13163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12150" g_stop="12863" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E379922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12150" e_stop="12863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTAT</genome_strand>
        <mrna_strand>GATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGAACCTGTTTTTTACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392240" ref_strand="+" ref_description="SGN-E392240 [TUS-36-I12]">
      <seq>gaacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaagcgggcgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaagggcgttgtcaaaattcctaaacaaaattccagcaatttatgtgtattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="11997" stop="13122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12297" g_stop="12822" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E392240" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12297" e_stop="12822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAA-CAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAA-GGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTT</genome_strand>
        <mrna_strand>GAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAAGCGGGCGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGGCGTTGTCAAAATTCCTAAACAAAATTCCAGCAATTTATGTGTATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392462" ref_strand="+" ref_description="SGN-E392462 [TUS-36-C16]">
      <seq>gaacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaaccgttctgcaagtgtagttcatacacatgaagcaaaattgagtttgcaaaatctaaattttttgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="11997" stop="13009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12297" g_stop="12709" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E392462" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12297" e_stop="12709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAAT</genome_strand>
        <mrna_strand>GAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCGTTCTGCAAGTGTAGTTCATACACATGAAGCAAAATTGAGTTTGCAAAATCTAAATTTTTTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369484" ref_strand="-" ref_description="SGN-E369484 [TUS-23-G9]">
      <seq>ttttttttttttttttttttttttttttttttttttnttttttatcttgataaaatattattttgaaagaatattttacttgaaactatataatgttatcggtttaatataatacctgtcagaataaaaataataaggtaaaaaacaggatccaaaaaaatgtttgtcatacaaaaataatacacataaattgctggaattttgtctaggaactttgacaacgccttccgatatcattaatcctgcaatttcaatcttctgtgaacttagatggcgtttgtttgaaatttttcaaaaaattttgaatttgcaaactcaattttgcttcatgtgtctgaactacacttgcagaaaggttcaaacttttctatgaagatttcagaaatatttcaacaaatttgaaaaaactagatttgaaaaagttagctatccttttttgttaaaaatccataatatacaagtttgcaaactcaattcctagaaaatctcaagcaaacgtcatcttaagctgcaaaacaatgtcgcaggaagaatgattcaagtgcaggatcaggcggtcaccaaggatgactatctaggggtcacctgagtaattgtgatgtgtacagaactttgttgactagtattacctctagatatcttcaatcttgattgcacgcttccttcagaatcttcgaagaaaccaggtggtgtaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="139817" stop="11998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13055" g_stop="13015" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.610"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13014" i_stop="12955" i_length="60">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12954" g_stop="12298" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="698" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E369484" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369484" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13055" e_stop="13015"/>
          <exon e_start="12954" e_stop="12298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTATTTCCGAATATAGAAAACTACGCGGAAAAAAAACATAAAGTAACGTGCATGGAAAAATCAGTTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAATCCATAATATACAAGTTTGCAAACTCAATTCCTAGAAAATCTCAAGCAAACGTCATCTTAAGCTGCAAAACAATGTCGCAGGAAGAATGATTCAAGTGCAGGATCAGGCGGTCACCAAGGATGACTATCTAGGGGTCACCTGAGTAATTGTGATGTGTACAGAACTTTGTTGACTAGTATTACCTCTAGATATCTTCAATCTTGATTGCACGCTTCCTTCAGAATCTTCGAAGAAACCAGGTGGTGTAAGTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT............................................................TTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAATCCATAATATACAAGTTTGCAAACTCAATTCCTAGAAAATCTCAAGCAAACGTCATCTTAAGCTGCAAAACAATGTCGCAGGAAGAATGATTCAAGTGCAGGATCAGGCGGTCACCAAGGATGACTATCTAGGGGTCACCTGAGTAATTGTGATGTGTACAGAACTTTGTTGACTAGTATTACCTCTAGATATCTTCAATCTTGATTGCACGCTTCCTTCAGAATCTTCGAAGAAACCAGGTGGTGTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371977" ref_strand="+" ref_description="SGN-E371977 [TUS-30-G10]">
      <seq>aacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcacgtgacccctatatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaaggcgttgtcaaagttcctagacaaaattccagcaattttatgtgtattatttttgtatgacaaacatttttttggatcctgtattttaccttattatttttattctgacaggtattattataaaaccgaatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="11998" stop="13203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12298" g_stop="12903" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E371977" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12298" e_stop="12903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAA-TTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTA-TATTAAACCGATAACAT</genome_strand>
        <mrna_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCACGTGACCCCTATATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTATTTTACCTTATTATTTTTATTCTGACAGGTATTATTATAAAACCGAATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232881" ref_strand="+" ref_description="SGN-E232881 [cLED-8-K16]">
      <seq>aacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="11998" stop="13047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12298" g_stop="12747" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E232881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12298" e_stop="12747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAA</genome_strand>
        <mrna_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243637" ref_strand="+" ref_description="SGN-E243637 [cLED-34-J3]">
      <seq>aacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="11998" stop="13035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12298" g_stop="12735" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E243637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12298" e_stop="12735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCAC</genome_strand>
        <mrna_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233513" ref_strand="+" ref_description="SGN-E233513 [cLED-9-A4]">
      <seq>aacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="11998" stop="12895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12298" g_stop="12595" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E233513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12298" e_stop="12595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTC</genome_strand>
        <mrna_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369483" ref_strand="+" ref_description="SGN-E369483 [TUS-23-G9](-)">
      <seq>ggcaatcaagattgaagatatctaaaggtaatattagtcaacaaagttttgtacacatcacaattactcaggtgacccctaaaaagtcatccttggtgaccgcctgatcctgcacttgaatcatttttcctgcgacattgttttgcagcttaaaaaaacgtttgcttgaaattttttaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaaaaaaactaactttttcaaatttagttttttcaaatttgttgaaaaatttttgaaattttcataaaaaagtttgaacctttttgcaagggtagttcaaacacatgaaacaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaaccccatttaagttcccaaaaaattgaaattgcaggattaatgaaatcggaaggggttgtcaaagttcctaaacaaaattccaacaatttatgggtattatttttgtatgacaaacatttttttggatcctgttttttaccttattatttttattttgccaggttttatattaaaccgataaccttatatagtttcaagtaaaatattttttcaaaataatattttttccagattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="12041" stop="139817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12340" g_stop="12952" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12953" i_stop="13019" i_length="67">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.59"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13020" g_stop="13063" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="657" r_length="44" r_score="0.591"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E369483" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12340" e_stop="12952"/>
          <exon e_start="13020" e_stop="13063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAAATATTCTTTCAAAATAATATTTTATCAAGATAACTGATTTTTCCATGCACGTTACTTTATGTTTTTTTTCCGCGTAGTTTTCTATATTCGGAAATAAGCAAAAATATAATTGCAAAATCAATAATCTAAATAAATATTAATA</genome_strand>
        <mrna_strand>GGCAATCAAGATTGAAGATATCTAAAGGTAATATTAGTCAACAAAGTTTTGTACACATCACAATTACTCAGGTGACCCCTAAAAAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTTTTCCTGCGACATTGTTTTGCAGCTTAAAAAAACGTTTGCTTGAAATTTTTTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAAAAAAACTAACTTTTTCAAATTTAGTTTTTTCAAATTTGTTGAAAAATTTTTGAAATTTTCATAAAAAAGTTTGAACCTTTTTGCAAGGGTAGTTCAAACACATGAAACAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACCCCATTTAAGTTCCCAAAAAATTGAAATTGCAGGATTAATGAAATCGGAAGGGGTTGTCAAAGTTCCTAAACAAAATTCCAACAATTTATGGGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTTTGCCAGGTTTTATATTAAACCGATAACCTTATATAGTTTCAAGTAAAATATTTTTTCAAAATAATATTTTTTCCAGAT...................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394851" ref_strand="+" ref_description="SGN-E394851 [TUS-43-A19](-)">
      <seq>cagggtgacccctagatagtcatctttggtgaccgcatgatcctgccctcccatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaaggcgttgtcaaagttcctagacaaaattccagcaatttatgtgtattatttttgtatgacaaacatttttttggatcctgttttttaccttattatttttattctgacaggtattatattaaaccgataacattatatagtttcaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="12108" stop="13224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12411" g_stop="12921" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="515" r_length="511" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E394851" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12411" e_stop="12921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAA</genome_strand>
        <mrna_strand>GTGACCCCTAGATAGTCATCTTTGGTGACCGCATGATCCTGCCCTCCCATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392482" ref_strand="-" ref_description="SGN-E392482 [TUS-36-I12](-)">
      <seq>tttttttttttttttttttttttttttttttttttttttttttttaccttgaaaaaactttattttgaaaaaatattttacttgaaactatataatgttatcggtttaatataatacctgtcaaaataaaaataataaggtaaaaaacaggatccaaaaaaatgtttgtcatacaaaaataatacccataaattgctggaattttgtctaggaactttgacaaccccttccaatatcattaatcctgcaatttcaatcttctgggaacttaaatggcgtttgtttgaaatttttcaaaaaattttgaatttgcaaactcaattttgcttcatgtgtctgaactaccctttcttaattgttcaaacttttctatgaaaatttcaaaaatatttcaacaaatttgaaaaaactaaatttgaaaaagttacctatccttttttgttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="139817" stop="12250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13055" g_stop="13013" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.628"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13012" i_stop="12955" i_length="58">
            <donor d_prob="0.000" d_score="0.63"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12954" g_stop="12550" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="448" r_length="405" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E392482" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392482" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13055" e_stop="13013"/>
          <exon e_start="12954" e_stop="12550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTATTTCCGAATATAGAAAACTACGCGGAAAAAAAACATAAAGTAACGTGCATGGAAAAATCAGTTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................TTACCTTGAAAAAACTTTATTTTGAAAAAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAAAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACCCATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACCCCTTCCAATATCATTAATCCTGCAATTTCAATCTTCTGGGAACTTAAATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACCCTTTCTTAATTGTTCAAACTTTTCTATGAAAATTTCAAAAATATTTCAACAAATTTGAAAAAACTAAATTTGAAAAAGTTACCTATCCTTTTTTGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223319" ref_strand="+" ref_description="SGN-E223319 [cLEL-14-C19](-)">
      <seq>ggcacgagaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacagacattagctgcattttgttgcattggatgtctgagtttgtttattgtactatttaggtcctttcttaactggaggtgaattcattattttcttgtttacagaaaccttatatttcttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="14153" stop="13209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13509" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="359"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E223319" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</genome_strand>
        <mrna_strand>GGCAC-G-AG-ACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223550" ref_strand="+" ref_description="SGN-E223550 [cLEL-14-C19](-)">
      <seq>ggcacgagaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacagacattagctgcattttgttgcattggatgtctgagtttgtttattgtactatttaggtcctttcttaactggaggtgaattcattattttcttgtttacagaaaccttatatttcttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="14153" stop="13209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13509" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="359"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E223550" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</genome_strand>
        <mrna_strand>GGCAC-G-AG-ACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696275" ref_strand="+" ref_description="SGN-E696275 [LH_Ea08L09](-)">
      <seq>cgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggagaaggcaaaatgctatccgtcttgaggagaaggagaatagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagagaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaggatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctcccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttttaatgtgttatcctcttacatattactcttttttctctatgaattttgtatcatttgctatattttgtgtcattctactactattctattggttaaggggcagacaatagctgcaatttgttgcatggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17229" stop="13337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16929" g_stop="16884" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="200" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="13594" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="810" r_length="610" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E696275" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16929" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="13594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATA-TACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTT-CGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAG</genome_strand>
        <mrna_strand>CGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAATAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAGAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTCCCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTTTAATGTGTTATCCTCTTACATATTACTCTTTTTTCTCTATGAATTTTGTATCATTTGCTATATTTTGTGTCATTCTACTACTATTCTATTGGTTAAGGGGCAGACAATAGCTGCAATTTGTTGCATGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711543" ref_strand="+" ref_description="SGN-E711543 [FB02BB10]">
      <seq>cgcatattctatgagaaaagaaatctcagtattgagaccaacacgacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaggatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacagacattagctgcattttgttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="14698" stop="13307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14403" g_stop="14335" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14201" g_stop="13610" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="661" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="675"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E711543" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14403" e_stop="14335"/>
          <exon e_start="14201" e_stop="13610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTT</genome_strand>
        <mrna_strand>CGCATATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACACGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219133" ref_strand="+" ref_description="SGN-E219133 [cLEL-11-G21](-)">
      <seq>tgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaagatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacaaacaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="14250" stop="13326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13950" g_stop="13627" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="325" polyA_stop="343"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E219133" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13950" e_stop="13627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGAC</genome_strand>
        <mrna_strand>TGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAAGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219553" ref_strand="+" ref_description="SGN-E219553 [cLEL-11-G21](-)">
      <seq>atgataccacccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaggatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtggcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="14267" stop="13326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13967" g_stop="13636" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="361"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E219553" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13967" e_stop="13636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATACCA-CCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTC</genome_strand>
        <mrna_strand>ATGATACCACCCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701976" ref_strand="+" ref_description="SGN-E701976 [FA17BH04]">
      <seq>agggactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtatcggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagaccccaggatgcccaagctggaaaggacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17619" stop="13578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17322" g_stop="16884" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="593" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="13878" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="916" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E701976" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17322" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="13878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGA</genome_strand>
        <mrna_strand>AGGGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTATCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGAC-CCCAGGATGCCCAAGCTGGAAAGGACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700012" ref_strand="+" ref_description="SGN-E700012 [FA11DD11]">
      <seq>ggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttncaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17588" stop="13628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17288" g_stop="16884" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="559" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="13928" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="833" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E700012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17288" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="13928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAG</genome_strand>
        <mrna_strand>GGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTNCAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701718" ref_strand="+" ref_description="SGN-E701718 [FA16DA05]">
      <seq>gcagcactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17622" stop="13647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17322" g_stop="16884" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="594" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="13947" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="849" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E701718" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17322" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="13947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAG-ACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCC</genome_strand>
        <mrna_strand>GCAGCACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728476" ref_strand="+" ref_description="SGN-E728476 [LA17DG10]">
      <seq>gcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggccctaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17622" stop="13686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17322" g_stop="16884" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="593" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="13986" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="809" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E728476" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17322" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="13986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAG</genome_strand>
        <mrna_strand>GCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCCTAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704135" ref_strand="+" ref_description="SGN-E704135 [FA23BG09]">
      <seq>gagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcagggatgcgccacatactgctgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17608" stop="13690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17308" g_stop="16884" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="579" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="13990" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="791" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E704135" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17308" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="13990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCT</genome_strand>
        <mrna_strand>GAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAGGGATGCGCCACATACTGCTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698434" ref_strand="+" ref_description="SGN-E698434 [FA06BB09]">
      <seq>cgtttttcgttgactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatctagataagaagccatccatcacagtcgtccaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17628" stop="13746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17329" g_stop="16884" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="601" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="14046" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="757" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E698434" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17329" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="14046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTT-GCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGG</genome_strand>
        <mrna_strand>CGTTTTTCGTTGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCTAGATAAGAAGCCATCCATCACAGTCGTCCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363923" ref_strand="+" ref_description="SGN-E363923 [cLPT-10-P6]">
      <seq>atggctgcatttgatgctttcagtttggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtgacggtggaacacgtatctcataccgtcgatagtcccgatccctacgggtacgggtcagattcgtttcctaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagagagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagagaagctgtacttgactagtcaagagaagttccataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17584" stop="13867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17284" g_stop="16884" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="555" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.554" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="14167" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="590" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E363923" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17284" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="14167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGA</genome_strand>
        <mrna_strand>ATGGCTGCATTTGATGCTTTCAGTTTGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTGACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGGTACGGGTCAGATTCGTTTCCTAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAGAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAGAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278654" ref_strand="+" ref_description="SGN-E278654 [cLER-10-D23]">
      <seq>agattttgcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccatattattgaggaaggtgaagaatataagagagcattctatgagaaaagaaatcttagttttgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17629" stop="13876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17329" g_stop="16884" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14335" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="600" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.554" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14201" g_stop="14176" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="626" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E278654" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17329" e_stop="16884"/>
          <exon e_start="14488" e_stop="14335"/>
          <exon e_start="14201" e_stop="14176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTT</genome_strand>
        <mrna_strand>AGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCATATTATTGAGGAAGGTGAAGAATATAAGAGAGCATTCTATGAGAAAAGAAATCTTAGTTTTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346287" ref_strand="+" ref_description="SGN-E346287 [cTOF-23-L15]">
      <seq>agattttgcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17629" stop="14091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17329" g_stop="16884" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14391" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="544" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E346287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17329" e_stop="16884"/>
          <exon e_start="14488" e_stop="14391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATG</genome_strand>
        <mrna_strand>AGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358524" ref_strand="+" ref_description="SGN-E358524 [cLHT-22-I5]">
      <seq>aaagaagagagaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtgacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttcctaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaagtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggagaaagcaaaatgctatccgtcttgaggagaaggagaatagagaaaaggaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17605" stop="14138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17305" g_stop="16884" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14438" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="473" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E358524" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17305" e_stop="16884"/>
          <exon e_start="14488" e_stop="14438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAG</genome_strand>
        <mrna_strand>AAAGAAGAGAGAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTGACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCTAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAAGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGAGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAATAGAGAAAAGGAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335887" ref_strand="+" ref_description="SGN-E335887 [cTOE-6-J20]">
      <seq>tgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaagaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17616" stop="14148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17316" g_stop="16884" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14448" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="474" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E335887" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17316" e_stop="16884"/>
          <exon e_start="14488" e_stop="14448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAA</genome_strand>
        <mrna_strand>TGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAAGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697973" ref_strand="+" ref_description="SGN-E697973 [FA04DE02]">
      <seq>ggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagataccgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17602" stop="16583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17302" g_stop="16884" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E697973" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17302" e_stop="16884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG</genome_strand>
        <mrna_strand>GGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACCGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293370" ref_strand="+" ref_description="SGN-E293370 [cLET-18-F3]">
      <seq>tactagagagaaggaaaattcgagagattttgcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17653" stop="16588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17353" g_stop="16888" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E293370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17353" e_stop="16888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGC</genome_strand>
        <mrna_strand>TACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311363" ref_strand="+" ref_description="SGN-E311363 [cLEZ-18-O14]">
      <seq>agaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17607" stop="16615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17307" g_stop="16915" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E311363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17307" e_stop="16915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTG</genome_strand>
        <mrna_strand>AGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324559" ref_strand="+" ref_description="SGN-E324559 [cTOC-9-H3]">
      <seq>tggactgtgaggtacctgcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctactgatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctatgtgaagatactgagggaattttcagttccgatggacccgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="17559" stop="16638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17259" g_stop="16938" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E324559" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17259" e_stop="16938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCT</genome_strand>
        <mrna_strand>TGGACTGTGAGGTACCTGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACTGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTATGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691107" ref_strand="+" ref_description="SGN-E691107 [LH_Ea05E01]">
      <seq>cattagaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaagccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcaccttttgggagccaggtagttcaaatttgtgaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccacttagagcctggaatgagttcgcatcttcattcaagatgggtaccaaaagccgcatactttcgggagttcgttcttccggcatattgaatacaccttggccatgtccaatgcgtttttcggagtacactccaattttgacgatttcatagttaacttaggatatgattttgagaccttgcgcttttgtggtttcttccgcattttttagataccaaataggacaagtggaaaattttgttaagctgtaatttgcttactgtagtctatttttgctttgtttttttttttttgtatccccagggtacaatttactgtccaaatgtaacctcctcaattgattaatgccatctttagttttcagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="19719" stop="18445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19423" g_stop="18746" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E691107" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19423" e_stop="18746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGC--ATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTG---TTTTTTTGTAG--CCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA</genome_strand>
        <mrna_strand>CATTAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTTGGGAGCCAGGTAGTTCAAATTTGTGAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCACTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGTACCAAAAGCCGCATAC-TTTCGGGAGTTCGTTCTTCCGGCATATTGAATACACCTTGGCCATGTCCAATGCGTTTTTCGGAGTACACTCCAATTTTGACGATTTCATAGTTAACTTAGGATATGATTTTGAGACCTTGCGCTTTTGTGGTTTCTTCCGCATTTTTTAGATACC-AAATAGGACAAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTAC--TGTAGTCTATTTTTGCTTTGTTTTTTTTTTTTTGTATCCCCAGGGTACAATTTACTGTCCAAATGTAACCTCCTCAATTGATTAATGCCATCTTTAGTTTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691108" ref_strand="+" ref_description="SGN-E691108 [LH_Ea05E02]">
      <seq>ccgtgaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaacccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcaccttttgggagccaggtagttcaaatttgtgaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccacttagagcctggaatgagttcgcatcttcattcaagatgggtaccaaaagccgcatactttcgggagttcgttcttccggcatattgaatacaccttggccatgtccaatgcgtttttcggagtacactccaattttgacgatttcatagttaacttaggatatgattttgagaccttgcgcttttgtggtttcttccgcattttttagataccaaataggacaagtggaaaattttgttaagctgtaatttgcttactgtagtctatttttgctttgtttttttttttttgtatccccagggtacaatttactgtccaaatgtaacctcctcaattgattaatgccatctttagttttcagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="19718" stop="18445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19423" g_stop="18746" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E691108" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19423" e_stop="18746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGC--ATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTG---TTTTTTTGTAG--CCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA</genome_strand>
        <mrna_strand>CCG-TGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAACCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTTGGGAGCCAGGTAGTTCAAATTTGTGAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCACTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGTACCAAAAGCCGCATAC-TTTCGGGAGTTCGTTCTTCCGGCATATTGAATACACCTTGGCCATGTCCAATGCGTTTTTCGGAGTACACTCCAATTTTGACGATTTCATAGTTAACTTAGGATATGATTTTGAGACCTTGCGCTTTTGTGGTTTCTTCCGCATTTTTTAGATACC-AAATAGGACAAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTAC--TGTAGTCTATTTTTGCTTTGTTTTTTTTTTTTTGTATCCCCAGGGTACAATTTACTGTCCAAATGTAACCTCCTCAATTGATTAATGCCATCTTTAGTTTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694948" ref_strand="+" ref_description="SGN-E694948 [LH_Ea05E02](-)">
      <seq>agaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaagccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcaccttttgggagccaggtagttcaaatttgtgaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccacttagagcctggaatgagttcgcatcttcattcaagatgggtaccaaaagccgcatactttcgggagttcgttcttccggcatattgaatacaccttggccatgtccaatgcgtttttcggagtacactccaattttgacgatttcatagttaacttaggatatgattttgagaccttgcgcttttgtggtttcttccgcattttttagataccaaataggacaagtggaaaattttgttaagctgtaatttgcttactgtagtctatttttgctttgtttttttttttgggtatccccagggtacaatttactgtccaaatgtaactaccgtcaattgattaatgccatctttagttttcagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="19719" stop="18445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19419" g_stop="18746" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="694"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E694948" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19419" e_stop="18746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGC--ATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTG----TTTTTTT--GTAGCCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCC-TCAATTGATTAATGGAATCTTTAGTTTTCAGCA</genome_strand>
        <mrna_strand>AGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTTGGGAGCCAGGTAGTTCAAATTTGTGAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCACTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGTACCAAAAGCCGCATAC-TTTCGGGAGTTCGTTCTTCCGGCATATTGAATACACCTTGGCCATGTCCAATGCGTTTTTCGGAGTACACTCCAATTTTGACGATTTCATAGTTAACTTAGGATATGATTTTGAGACCTTGCGCTTTTGTGGTTTCTTCCGCATTTTTTAGATACC-AAATAGGACAAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTAC--TGTAGTCTATTTTTGCTTTGTTTTTTTTTTTGGGTATCCCCA-GGGTACAATTTACTGTCCAAATGTAACTACCGTCAATTGATTAATGCCATCTTTAGTTTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694947" ref_strand="+" ref_description="SGN-E694947 [LH_Ea05E01](-)">
      <seq>agaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaagccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcaccttttgggagccaggtagttcaaatttgtgaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccacttagagcctggaatgagttcgcatcttcattcaagatgggtaccaaaagccgcatactttcgggagttcgttcttccggcatattgaatacaccttggccatgtccaatgcgtttttcggagtacactccaattttgacgatttcatagttaacttaggatatgattttgagaccttgcgcttttgtggtttcttccgcattttttagataccaaataggacaagtggaaaattttgttaagctgtaatttgcttactgtagtctatttttgctttgtttttttttaggtgtatccccagggtacaatttactgtccaaatgtaacatcgtcaattgattaatgccatctttagttttcagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="19719" stop="18445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19419" g_stop="18746" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E694947" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19419" e_stop="18746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGC--ATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTGTTTTTTTGTA-GCCT----CAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA</genome_strand>
        <mrna_strand>AGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTTGGGAGCCAGGTAGTTCAAATTTGTGAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCACTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGTACCAAAAGCCGCATAC-TTTCGGGAGTTCGTTCTTCCGGCATATTGAATACACCTTGGCCATGTCCAATGCGTTTTTCGGAGTACACTCCAATTTTGACGATTTCATAGTTAACTTAGGATATGATTTTGAGACCTTGCGCTTTTGTGGTTTCTTCCGCATTTTTTAGATACC-AAATAGGACAAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTAC--TGTAGTCTATTTTTGCTTTGTTTTTTTTTAGGTGTATCCCCAGGGTACAATTTACTGTCCAAATGTAACATCGTCAATTGATTAATGCCATCTTTAGTTTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349464" ref_strand="+" ref_description="SGN-E349464 [cTOS-1-P14]">
      <seq>taaaacacaggctgctgaaagggctcttgttgctctgaagtctgagctggctcaattttctcacaagcgccagggttctccaagatcattgcagcagcagggattttctaataaaagattgaaacctgaatattctcggggtgtgcagcagagagtaccattgtctggtagattcccgaagaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaagccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcacctttcgggagccaggtagttcaaatttgtaaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccagttagagcctggaatgagttcgcatcttcattcaagatgggcaccaaaagccgcatacttttggggagttagttcttccggcattgaatacaccttggccatgtccaatgcgttttccggagtacactccaattttgacgatttcatagttgatttaggatatgattttgagacctttnccgctttgtggtttctcccgcattttttagataccaaaataggacgagtggaaaattttgttaagctgtaatttgcttactgtgtagtctatttttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="20239" stop="18528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20021" g_stop="20012" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20011" i_stop="19934" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19933" g_stop="19860" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="84" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19859" i_stop="19515" i_length="345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19514" g_stop="18828" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="772" r_length="688" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E349464" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20021" e_stop="20012"/>
          <exon e_start="19933" e_stop="19860"/>
          <exon e_start="19514" e_stop="18828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACACAGGTGCTTACTTTTTAAATTCCTCTCTTATCCCTTTTCTCTATGATTTTAAAATTTTGGGCTGCACATTTGTTTCTCTAGGCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAGGCAAGTGATTTCAGGCATTTCACTTTTGAAACTAGACTAATGTAGTTTCCCCTATTTGGAAGGCAATTTTTTTCTTCTGGCCACCCAGTAAACCTAATGAAATTCTTTCTGTATATGTGTGGGTTTGGGGTGGGGGTGGGGATTCTGGTTTGTCTTTTTGCTGCCATCTGTTCATAATTTATATTTTTTTGCCTCCTTCGCATCTTGTTATTTAAGGGTGAGCGGGTATTGGATTTCTGATGAAGCCATTATCTTTATTTTAGAGCTGTGTTCTCCATGGCTTTGTTTTGGAGGTAAACCAGTATTAGCTTCTGATTGTGCATTTATTGTTGCTCTTTCATCCAGATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGCATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGC-TTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATT</genome_strand>
        <mrna_strand>TAAAACACAG..............................................................................GCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAG.........................................................................................................................................................................................................................................................................................................................................................ATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGCATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTNCCGCTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332984" ref_strand="+" ref_description="SGN-E332984 [cTOD-19-D14]">
      <seq>tcaagcgttaccaggaggataaaattattttaaagcaatatgccgaaaatgatcaggttgttgacaatggaaaggtgatcagatctcagtctgaggttttccccgcattgtctgataatcaccaacctattgtcagacccctgattaggttgcaagatagaaacattattcttactcgtattaatccaatgatccgtgatactagtgttcttgtgagattgagacctgcttgggaggatctccgcagctatctgactgcaaggggtcggaagcgctttgaagtttatgtgtgcacaatggctgaaagagattatgctttagaaatgtggcgccttcttgatccagattcaaacttgattaactcacaagaactcttggatcgtattgtctgtgtcaagtctggcttgaggaaatctttgttcaatgtattccaagatggaaattgtcatcctaagatggcattggtgattgatgatcgcttgaaagtgtgggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="27163" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26863" g_stop="26673" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26672" i_stop="26411" i_length="262">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26410" g_stop="26200" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="402" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26199" i_stop="26118" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26117" g_stop="26024" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="496" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E332984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26863" e_stop="26673"/>
          <exon e_start="26410" e_stop="26200"/>
          <exon e_start="26117" e_stop="26024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATGGTATGTGGACTTTGTACTCTATCGTCTATACCATGTTATCCCTGTTTTGTTAATCGTGTCATTTATGGTCCACTGATGACTAGTTGACAGCCAGATGAGGAATGCAAGTCATTTGTAGTCTTACGTTTACTGTTGAAAGGGGTTCAGTGATAGGACTATCCATTTCTTTCTCCCCTTCCTCTTTTGCATTAAACTGTTTTATGGTCTGTAGCTTTATCATACTTTTTTTGGGGGGATGCATCACATATTCTTTCCATGGCAGATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTGGCAAGTTTCTAAATTACAAAACTTTCGCTAGTGCATTGTTCTTTTTCTCTCTAATCACTGACTTTTCATGATTATTTTGTAGGCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGA</genome_strand>
        <mrna_strand>TCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATG......................................................................................................................................................................................................................................................................ATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTG..................................................................................GCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736309" ref_strand="+" ref_description="SGN-E736309 [LC05AF10]">
      <seq>gccctttacactttctataaaccctaatttcaggttccaaattacctcaaatttttggttttaataacgaaaatacatcaatattcgtgttctttagttgatctagttgcaggaattttgaattctccgtcggaaaatgatcgttagaacatacggccggcggagtagaagcatgtctcggagctactctgaatcagggttaaatgatgaagtttcggaacacacactttctcaggagaattctcaagatatttacagttttgggttttcatctcaagactcagttcactggtcgtcgaatttcaataattcagatccatacgatgtcggctcatctcaagggtgtcaagaattgtcgattttgccgtcaaggaaggaggatagggatttgggttttgagggtcatgatggggttttgtggaaacccaagaaagtaaagatgtttgattgggagacttatagtttgaattcatcacaagaatcggatgaattttcgtttttacccgatgggggggagtatggtggtcttgggaaatttgatgggggattacatgaaccaatgaaggtgaagaagactgggaagggtaaggaaaatggggttttgcagaagaagaagaagaaggtgaagtcgaaggagctgggattgccttcactggggcccacagcgactttgatggagactcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="33546" stop="34828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33709" g_stop="33717" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33718" i_stop="33847" i_length="130">
            <donor d_prob="0.443" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33848" g_stop="34528" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="690" r_length="681" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E736309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33709" e_stop="33717"/>
          <exon e_start="33848" e_stop="34528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTTACGTAAATTCCTCTACTTGGAAATTAACGCATCTATTTTAATTAGCAAATAAAGAAAGTCTATTTCTCTCTCTCTCACGCTTCCTGATCTTCGTTATTTTCAAATCTTCAAATCAGAGCAAACTCACAACACACTTTCTATAAACCCTAATTTCAGGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAGTTTCGGAACACACACTTTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTACATGAACCAATGAAGGTGAAGAAGACTGGGAAGGGTAAGGAAAATGGGGTTTTGCAGAAGAAGAAGAAGAAGGTGAAGTCGAAGGAGCTGGGATTGCCTTCACTGGGGCCCACAGCGACTTTGATGGAGACTCAAGAATG</genome_strand>
        <mrna_strand>GCCCTTTAC..................................................................................................................................ACTTTCTATAAACCCTAATTTCAGGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAGTTTCGGAACACACACTTTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTACATGAACCAATGAAGGTGAAGAAGACTGGGAAGGGTAAGGAAAATGGGGTTTTGCAGAAGAAGAAGAAGAAGGTGAAGTCGAAGGAGCTGGGATTGCCTTCACTGGGGCCCACAGCGACTTTGATGGAGACTCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364762" ref_strand="+" ref_description="SGN-E364762 [cLPT-4-F15]">
      <seq>tcaaatcttcaaatcagagcaaactcacaacaacactttctataaaccctaatttcaggttccaaattaccccaaatttttggttttaattacgaaaatacatcaatattcgtgttctttagttgatctagttgcaggaattttgaattctccgtcggaaaatgatcgttagaacatacggccggcggagtagaagcatgtcacggagctactctgaatcagggttaaatgatgaagtttcggaacacatactttctcaggagaattctcaagatatttacagtttcgggttttcatctcaagactcagttcactggtcgtcgaatttcaataattcagatccatacgatgtcggctcatctcaagggtgtcaagaattgtcgattttgccgtcaaggaaggaggatagggatttgggttttgagggtcatgatggggttttgtggaaacccaagaaagtaaagatgtttgattgggagacttatagtttgaattcatcacaagagtcggatgaattttcgtttttaccagatgggggggagtacggtggtcttgggaaatttgatgggggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="33515" stop="34688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33815" g_stop="34388" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E364762" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33815" e_stop="34388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTTCAAATCAGAGCAAACTCACAAC-ACACTTTCTATAAACCCTAATTTCAGGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAGTTTCGGAACACACACTTTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTA</genome_strand>
        <mrna_strand>TCAAATCTTCAAATCAGAGCAAACTCACAACAACACTTTCTATAAACCCTAATTTCAGGTTCCAAATTACCCCAAATTTTTGGTTTTAATTACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCACGGAGCTACTCTGAATCAGGGTTAAATGATGAAGTTTCGGAACACATACTTTCTCAGGAGAATTCTCAAGATATTTACAGTTTCGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAGTCGGATGAATTTTCGTTTTTACCAGATGGGGGGGAGTACGGTGGTCTTGGGAAATTTGATGGGGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738339" ref_strand="+" ref_description="SGN-E738339 [LC13BB10]">
      <seq>gatcaaactcacaacacactttctataaaccctaatttcaggttccaaattacctcaaatttttggttttaataacgaaaatacatcaatattcgtgttctttagttgatctagttgcaggaattttgaattctccgtcggaaaatgatcgttagaacatacggccggcggagtagaagcatgtctcggagctactctgaatcagggttaaatgatgaagtttcggaacacacactttctcaggagaattctcaagatatttacagttttgggttttcatctcaagactcagttcactggtcgtcgaatttcaataattcagatccatacgatgtcggctcatctcaagggtgtcaagaattgtcgattttgccgtcaaggaaggaggatagggatttgggttttgagggtcatgatggggttttgtggaaacccaagaaagtaaagatgtttgattgggagacttatagtttgaattcatcacaagaatcggatgaattttcgtttttacccgatgggggggagtatggtggtcttgggaaatttgatgggggattacatgaaccaatgaaggtgaagaagactgggaagggtaaggaaaatggggttttgcagaagaagaagaagaaggtgaagtcgaaggagctgggattgccttcactggggcccacagcgactttgatggagactcaagaatgtggtgagatgatggaacatatggatgaggtgaattttgcgttggatggtttgaggaaagggcagcctgcgagaatcagaagggcgagtttattgtcattgctatctatatgtggaaaagctcagcagcgtcgccttttgcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="33531" stop="34971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33831" g_stop="34671" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E738339" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33831" e_stop="34671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAACTCACAACACACTTTCTATAAACCCTAATTTCAGGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAGTTTCGGAACACACACTTTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTACATGAACCAATGAAGGTGAAGAAGACTGGGAAGGGTAAGGAAAATGGGGTTTTGCAGAAGAAGAAGAAGAAGGTGAAGTCGAAGGAGCTGGGATTGCCTTCACTGGGGCCCACAGCGACTTTGATGGAGACTCAAGAATGTGGTGAGATGATGGAACATATGGATGAGGTGAATTTTGCGTTGGATGGTTTGAGGAAAGGGCAGCCTGCGAGAATCAGAAGGGCGAGTTTATTGTCATTGCTATCTATATGTGGAACAGCTCAGCAGCGTCGCCTTTTGCGGG</genome_strand>
        <mrna_strand>GATCAAACTCACAACACACTTTCTATAAACCCTAATTTCAGGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAGTTTCGGAACACACACTTTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTACATGAACCAATGAAGGTGAAGAAGACTGGGAAGGGTAAGGAAAATGGGGTTTTGCAGAAGAAGAAGAAGAAGGTGAAGTCGAAGGAGCTGGGATTGCCTTCACTGGGGCCCACAGCGACTTTGATGGAGACTCAAGAATGTGGTGAGATGATGGAACATATGGATGAGGTGAATTTTGCGTTGGATGGTTTGAGGAAAGGGCAGCCTGCGAGAATCAGAAGGGCGAGTTTATTGTCATTGCTATCTATATGTGGAAAAGCTCAGCAGCGTCGCCTTTTGCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738352" ref_strand="+" ref_description="SGN-E738352 [LC13BD05]">
      <seq>cagttaactcacaacacactttctataaacgcctaatttccagttccaaattacctcaaatttttggttttaataacgaaaatacatcaagattcgtgttctttaattgatctagttgcaggaattttgaattctccgtcggaaaatgatcgttagaacatacggccggcggagtagaagcatgtctcggagctactctgaatcagggttaaatgatgaagatttcggaacacacacatattctcaggagaattctcaagatatttacagttttgggttttcatctcaagactcagttcactggtcgtcgaatttcaataattcaacatccatactatgtcggctcatctcaagggtgtcaagaattgtcgattttgccgtcaaggaaggaggatagggatttgggttttgagggtcatgatggggttttgtggaaacccagtaaagtaaagatgtttgattggtagacttatagtttgaattcatcacctgaatcggatgaattttcgtttttacccgatgggggggagtatggtggtcttgggaaatttgatgggggattacatgaaccaatgaaggtgaagaatactgggaagggtaaggaaaatggggttttgcagaagaagaagaagaaggtgaagtcgaaggagctgggattgccttcactggggcccacagcgactttgatggatactcaagattgtggtgagatgatggaacatatggatgaggtgaattttgcgttggatggtttgaggaaagggcagcctgcgaaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="33532" stop="34905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33831" g_stop="34606" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E738352" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33831" e_stop="34606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAACTCACAACACACTTTCTATAAAC-CCTAATTTCAGGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAG-TTTCGGAACACACAC-T-TTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTC-AGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTACATGAACCAATGAAGGTGAAGAAGACTGGGAAGGGTAAGGAAAATGGGGTTTTGCAGAAGAAGAAGAAGAAGGTGAAGTCGAAGGAGCTGGGATTGCCTTCACTGGGGCCCACAGCGACTTTGATGGAGACTCAAGAATGTGGTGAGATGATGGAACATATGGATGAGGTGAATTTTGCGTTGGATGGTTTGAGGAAAGGGCAGCCTGCGAGAATCAG</genome_strand>
        <mrna_strand>CAGTTAACTCACAACACACTTTCTATAAACGCCTAATTTCCAGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAAGATTCGTGTTCTTTAATTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAGATTTCGGAACACACACATATTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAACATCCATACTATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAGTAAAGTAAAGATGTTTGATTGGTAGACTTATAGTTTGAATTCATCACCTGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTACATGAACCAATGAAGGTGAAGAATACTGGGAAGGGTAAGGAAAATGGGGTTTTGCAGAAGAAGAAGAAGAAGGTGAAGTCGAAGGAGCTGGGATTGCCTTCACTGGGGCCCACAGCGACTTTGATGGATACTCAAGATTGTGGTGAGATGATGGAACATATGGATGAGGTGAATTTTGCGTTGGATGGTTTGAGGAAAGGGCAGCCTGCGAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304530" ref_strand="+" ref_description="SGN-E304530 [cLEX-11-E8]">
      <seq>aaaagcctagattctacttcgtcttcaataacccgcaaagtgcaggaggttcttatttcttgcaaggaaataaagccagatgatggaaatggacatgacacaccataattaaacccaaaatggattagtttactgacaatggcaaaagcttgcttgtcgacaatctctattgaagatacttctggtactgtgcggagaagtaaggacaacttcaaagaaaagctgagagagcttggaggacttgatgcggtctttgacgtggcaagaagttgtcattctgttttggagggttggtcaaagaaaagttcacagtctatcgtagattctaaagataatacggccatagaaagtctggtgctactcttaaaatgttcgaagatcatggaaaatgcaacctttcttagtacggacaatcagaatcacttgcttcaaatgaaaggaaaatttgatagtctgaactccccaaagtcttttacaaagctaatcttaagtgtgatcaagattctctccggggcttacctgtgcagaacttcttttggaagttccaatgatggaaaagtctgtgacctttctgatggaactgctcgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="37255" stop="39702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37555" g_stop="37729" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37730" i_stop="38333" i_length="604">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38334" g_stop="38446" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="288" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38447" i_stop="38868" i_length="422">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38869" g_stop="38997" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="417" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38998" i_stop="39084" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39085" g_stop="39178" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="511" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39179" i_stop="39320" i_length="142">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39321" g_stop="39402" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="593" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E304530" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37555" e_stop="37729"/>
          <exon e_start="38334" e_stop="38446"/>
          <exon e_start="38869" e_stop="38997"/>
          <exon e_start="39085" e_stop="39178"/>
          <exon e_start="39321" e_stop="39402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCCTAGATTCTACTTCGTCTTCAATAACCCGCAAGGTGCAGGAGGTTCTTATTTCTTGCAAGGAAATAAAGCCAGATGATGGAAATGGACATGACAGACCAGAATTAAACCCAAAATGGATTAGTTTACTGACAATGGCAAAAGCTTGCTTGTCGACAATCTCTATTGAAGGTTTGTGAGGCACTTAAATTGGTCCTTTGAGGGATAATATTTCTTTGTTTCAAATGTTTTTTCTTCTTCCTGCAGTGGAAAATTCAAAGCTATTTAATATATATTCATCCTTTAGGTTGGGTGGGTTGGTTGCAATTTTGCTTTTGTTATTGGAAGTTAATCTGAGTAGCTTGTTATTCTTTTAACTTCTTGAGATTGCTTTTTGATTGCTACCTGTCTCCTACTAAGAGGTAAAAGTCAGAAAATAGAAGAGCTAAGTAGCTCTGTGTTTGCTTTTATATTGTATTTACGACTTATACAATGGTTTCCTGGTTATTTCCTTAATCTACATTTGTGTTATTTAGTGGCTGTTTCTTTCAAAACTGCAGATCTGACTCTTTTTCTGATTCTGGAAATTTTATCATATTATGTTCTAGAATCTTTTAGTGTGGTACTCTGATACCCATTTCTTCTGCCTGTGTTTCTTATAGTGGCTTACAATTGAATCATTTTTAAGAGATCATATGGAACTCAAGCTACCTTGACAGTGATTGATCTGTATTTCACCATTTTTGCATAGTATAACATAGTTTTCTTTTTCTTCTTTCTGTCTGTATTCACTCAGATACTTCTGGTACTGTGCGGAGAAGTAAGGACAACTTCAAAGAAAAGCTGAGAGAGCTTGGAGGACTTGATGCGGTCTTTGACGTGGCAAGAAGTTGTCATTCTGTTTTGGAGGTGTGAGCCTGTATGCTATTTTCTGTGTTGTTGCCAGAGACGAGTCTCATAAATTTGTGACATGTGAAGAACCAACAATATGCTCTATGTTCCTCTTATATTTAAGCTCTGAGTTGGAGTGGTAACATGACCATTTTGGATTGAAAGAACATGATCACTTGTGCTCCCTATCACCCTCTTCATATCCTTTGTTTTTGTCCAGAAGGTTTTAGATTGTGATTATAATTATATATATGCATGTCGAAGAGAATTTTGTATGGATTTGACGTTCATCTAGATCTTTTGGTGTACAAATTCTATCTGTGACTTCAAGGTTGTTATTTGAGTTATCCGTTTTTCGCCTTAACTCATGCTGTAATCAATAATCGGAAATTTAGATGGGTATTTTGATGTAATCTGCCCTGACATCATTTTCTCTGCAGGGTTGGTCAAAGAAAAGTTCACAGTCTATCGTAGATTCTAAAGATAATACGGCCATAGAAAGTCTGGTGCTACTCTTAAAATGTTTGAAGATCATGGAAAATGCAACCTTTCTTAGTACGGACAATCAGGTAACATGAATATACCTTCCTGTAGTAGACTGCCTTTCTGTACCCTTGAATTCCTGGATGTTGAGTTCACTACCTGTTTTGTTTCAGAATCACTTGCTTCAAATGAAAGGAAAATTTGATAGTCTGAACTCCCCAAGGTCTTTTACAAAGCTAATCTTAAGTGTGATCAAGATTCTCTCCGGTACTCCTGCCTCCTATCTTTTCATCCCAAATAAAAAAATTGACTCTACATTTTTGTTTTCCCTTAATCATTAACATATTGCATTTCTTTTGTCCCTTGGCTTATGATGCTTCCTGTCTGTCTGACTTGTTTGAATTTGTAGGGGCTTACCTGTGCAGAACTTCTTTTGGAAGTTCCAATGATGGAAAAGTCTGTGACCTTTCTGATGGAACTGCTCGTGCTTT</genome_strand>
        <mrna_strand>AAAAGCCTAGATTCTACTTCGTCTTCAATAACCCGCAAAGTGCAGGAGGTTCTTATTTCTTGCAAGGAAATAAAGCCAGATGATGGAAATGGACATGACACACCATAATTAAACCCAAAATGGATTAGTTTACTGACAATGGCAAAAGCTTGCTTGTCGACAATCTCTATTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTGGTACTGTGCGGAGAAGTAAGGACAACTTCAAAGAAAAGCTGAGAGAGCTTGGAGGACTTGATGCGGTCTTTGACGTGGCAAGAAGTTGTCATTCTGTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTCAAAGAAAAGTTCACAGTCTATCGTAGATTCTAAAGATAATACGGCCATAGAAAGTCTGGTGCTACTCTTAAAATGTTCGAAGATCATGGAAAATGCAACCTTTCTTAGTACGGACAATCAG.......................................................................................AATCACTTGCTTCAAATGAAAGGAAAATTTGATAGTCTGAACTCCCCAAAGTCTTTTACAAAGCTAATCTTAAGTGTGATCAAGATTCTCTCCG..............................................................................................................................................GGGCTTACCTGTGCAGAACTTCTTTTGGAAGTTCCAATGATGGAAAAGTCTGTGACCTTTCTGATGGAACTGCTCGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338590" ref_strand="+" ref_description="SGN-E338590 [cTOE-15-G8]">
      <seq>tctagacttgcagctgctagtatttcattgcctggatcagaaggtttgtttaagggggagactcagacagatgttatccctctgctatgtgcaatctttctggaaaatcaaggggctggagaggctgctggggaaggaaaatgtttgcaatgggatgatgaagatgctgtactacagggggagaaagaagctgaaaaaatgattattgaagcatattcagctctccttcttgccttcctttcaactgagagcaagagcatacggcaggcaatcgctggttacttaccagatcataaattgtccattcttgtacctgtgctggagagatttgtggaattccacatgacactgaacatgatatcgccagagactcattcaacagtgcttgaagttatagaatcttgtagggttaggtgagactctattgtttccttttccttccgtgtcttttcctcgaagatggtaacaatgagactttgtacagcataaactacctttccctacagcattggtgcattagaaatcctatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="42615" stop="44617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42915" g_stop="43067" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43068" i_stop="43602" i_length="535">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43603" g_stop="43700" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="251" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43701" i_stop="43787" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43788" g_stop="43869" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="333" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43870" i_stop="44118" i_length="249">
            <donor d_prob="0.104" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44119" g_stop="44317" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="532" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E338590" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42915" e_stop="43067"/>
          <exon e_start="43603" e_stop="43700"/>
          <exon e_start="43788" e_stop="43869"/>
          <exon e_start="44119" e_stop="44317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGACTTGCAGCTGCTAGTATTTCATTGCCTGGATCAGAAGGTTTGTTTAAGGGGGAGACTCAGACAGATGTTATCCCTCTGCTATGTGCAATCTTTCTGGAAAATCAAGGGGCTGGAGAGGCTGCTGGGGAAGGAAAATGTTTGCAATGGGTATGCAAGATTGCTTTATCCAATTTTTCGTCTAAATCTCTAGTCCTTTTCTGATTTGCATGACTATTTTTATTTTGTGTGGTCCCGATTCTGGAATCTTTGGTTTTTTCCATACTGTTCTCTGTTTATTCTCCATATGATTCACAGAGAAGTCAACCACCTAGTGGTGAATCTAGAAGGCAATTCAAAATCTGATTCCTTGAGCTTGCTTTATCAAATTGATTAAGTATACTGAATGTTCATTAAAGTGTTCTCCATTTTCCAAATCTGCTTAGTGATGCCAGTTTTTGATTGTCAAATTCAACTTGCTTATATCACTAGAATTTTAGCTTCATGGCTCTTAACGGGACAGTGAGTTTAGCCGGATATAAAATCCACTTGGGATGGGGGGGGGGGGGGTAGGGGCAAGAGAGAGATTTCAGTTGATTGAGCATGAAGCACGGTTAAACTAGTCTTATCATATACTACCAGTTTGCTAGATTACTTTGAGCTTTGACCATGTGGCTACTAAATTGAATGTGGTTGTCTTGTACAGGATGATGAAGATGCTGTACTACAGGGGGAGAAAGAAGCTGAAAAAATGATTATTGAAGCATATTCAGCTCTCCTTCTTGCCTTCCTTTCAACTGAGAGGTTAGTTATGTCTTACAAAATTACTTTTTCTGTCTGTTATCTCTCACTCAAATGGTCTCTTATGTTCTTAATCTTTCTTTGAACCAGCAAGAGCATACGGCAGGCAATCGCTGGTTACTTACCAGATCATAAATTGTCCATTCTTGTACCTGTGCTGGAGAGATTTGTGGTATGTGATCTTGTGTGGTTCTTCTTTGAGTTGATCAAGCATGACAGTAGAAATTGTATAATTTAGTCCCAACTTCTACAATTTGCATCCAATATTTCAATGTTCTCTCATCAGCCATCGTCAGGAATGTCTCATTAGGGTCCTAGTCTCCTAGGCTTGGACGTAAATCTACAAGAAAAACTTCAGTATTGACGTTGCTTTCCTAGTGATTTTTATATGTATATATGTTAATTTGTGTTCTTCATCCAGGAATTCCACATGACACTGAACATGATATCGCCAGAGACTCATTCAACAGTGCTTGAAGTTATAGAATCTTGTAGGGTTAGGTGAGACTCTATTGTTTCCTTTTCCTTCCGTGTCTTTTCCTCGAAGATGGTAACAATGAGACTTTGTACAGCATAAACTACCTTTCCCTACAGCATTGGTGCATTAGAAATCCTATCTC</genome_strand>
        <mrna_strand>TCTAGACTTGCAGCTGCTAGTATTTCATTGCCTGGATCAGAAGGTTTGTTTAAGGGGGAGACTCAGACAGATGTTATCCCTCTGCTATGTGCAATCTTTCTGGAAAATCAAGGGGCTGGAGAGGCTGCTGGGGAAGGAAAATGTTTGCAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAAGATGCTGTACTACAGGGGGAGAAAGAAGCTGAAAAAATGATTATTGAAGCATATTCAGCTCTCCTTCTTGCCTTCCTTTCAACTGAGAG.......................................................................................CAAGAGCATACGGCAGGCAATCGCTGGTTACTTACCAGATCATAAATTGTCCATTCTTGTACCTGTGCTGGAGAGATTTGTG.........................................................................................................................................................................................................................................................GAATTCCACATGACACTGAACATGATATCGCCAGAGACTCATTCAACAGTGCTTGAAGTTATAGAATCTTGTAGGGTTAGGTGAGACTCTATTGTTTCCTTTTCCTTCCGTGTCTTTTCCTCGAAGATGGTAACAATGAGACTTTGTACAGCATAAACTACCTTTCCCTACAGCATTGGTGCATTAGAAATCCTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227464" ref_strand="+" ref_description="SGN-E227464 [cLEL-30-F15](-)">
      <seq>ggttacttaccagatcataaattgtccattcttgtacctgtgctggacagatatgtggaattccacatgaccctgaacatgattatcgccagagactcattcaacagtgcttgaagttatagaatcttgtagggttaggtgagactctattgtttccttttccttccgtgtcttttcctcgaagatggtaacaatgagactttgtacagcataaactacctttccctacagcattggtgcattagaaatcctatctcaggatttgtgtgtcatggcctttgtttgtctatggtttccctggtctttatagaaatatattcttccccctattttccagccaattgtttcaccatgttttggtgtgggctgagatacttgtacatgaagaaagattatgaatatgtatcccggttgtaatttgtagtacctttttagtgatggtttctttctctcaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="43513" stop="81318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43813" g_stop="43869" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43870" i_stop="44118" i_length="249">
            <donor d_prob="0.104" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44119" g_stop="44515" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="455" r_length="398" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44516" i_stop="44628" i_length="113">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.565" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44629" g_stop="44644" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="471" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E227464" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43813" e_stop="43869"/>
          <exon e_start="44119" e_stop="44515"/>
          <exon e_start="44629" e_stop="44644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACTTACCAGATCATAAATTGTCCATTCTTGTACCTGTGCTGGAGAGATTTGTGGTATGTGATCTTGTGTGGTTCTTCTTTGAGTTGATCAAGCATGACAGTAGAAATTGTATAATTTAGTCCCAACTTCTACAATTTGCATCCAATATTTCAATGTTCTCTCATCAGCCATCGTCAGGAATGTCTCATTAGGGTCCTAGTCTCCTAGGCTTGGACGTAAATCTACAAGAAAAACTTCAGTATTGACGTTGCTTTCCTAGTGATTTTTATATGTATATATGTTAATTTGTGTTCTTCATCCAGGAATTCCACATGACACTGAACATGA-TATCGCCAGAGACTCATTCAACAGTGCTTGAAGTTATAGAATCTTGTAGGGTTAGGTGAGACTCTATTGTTTCCTTTTCCTTCCGTGTCTTTTCCTCGAAGATGGTAACAATGAGACTTTGTACAGCATAAACTACCTTTCCCTACAGCATTGGTGCATTAGAAATCCTATCTCAGGATTTGTGTGTCATGGCCTTTGTTTGTCTATGGTTTCCCTGGTCTTTATAGAAATATATTCTTCCCCCTATTTTCCAGCCAATTGTTTCACCATGTTTTGGTGTGGGCTGAGATACTTGTACATGAAGAAAGATTATGAATATGTATCACGGTTGTAATTTGTAGTAATTTTTTAGTGATGGTTTCTTTCTCTCTGGCAGCTTGTTATGTACTTTCTATCTCTTCTTTTTTGTTAATTCCGAATTTCGTTAGGAGAGTGGAAAAAAAACTAAAAGTTTCTTTTGCTGCTTTACCATGTTTGTTTAACAGTGAAGAAATAATAGTC</genome_strand>
        <mrna_strand>GGTTACTTACCAGATCATAAATTGTCCATTCTTGTACCTGTGCTGGACAGATATGTG.........................................................................................................................................................................................................................................................GAATTCCACATGACCCTGAACATGATTATCGCCAGAGACTCATTCAACAGTGCTTGAAGTTATAGAATCTTGTAGGGTTAGGTGAGACTCTATTGTTTCCTTTTCCTTCCGTGTCTTTTCCTCGAAGATGGTAACAATGAGACTTTGTACAGCATAAACTACCTTTCCCTACAGCATTGGTGCATTAGAAATCCTATCTCAGGATTTGTGTGTCATGGCCTTTGTTTGTCTATGGTTTCCCTGGTCTTTATAGAAATATATTCTTCCCCCTATTTTCCAGCCAATTGTTTCACCATGTTTTGGTGTGGGCTGAGATACTTGTACATGAAGAAAGATTATGAATATGTATCCCGGTTGTAATTTGTAGTACCTTTTTAGTGATGGTTTCTTTCTCTCAA.................................................................................................................AAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695937" ref_strand="+" ref_description="SGN-E695937 [LH_Ea07N07](-)">
      <seq>tatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaattccttaccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattgttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctacatgtaatattttgctgcagtgaccctgcaattcctatgaaaagcaggcactgaaggatgaaattaccatgttataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47157" stop="7880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46857" g_stop="46776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="318" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45386" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="789" r_length="471" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45385" i_stop="45193" i_length="193">
            <donor d_prob="0.972" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45192" g_stop="45167" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="814" r_length="25" r_score="0.731"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E695937" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46857" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45386"/>
          <exon e_start="45192" e_stop="45167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTCTCTTTCTTTGCTATGTTATATTATGAATGTTAACTGATTACCTTAAAAGTAGAGATTTATTCAACTTTTATTCGAATTCCCTTTTAGAGAGCAAAACTTAATCCTGCAAGTAAGGATGAGTATTTACTCTTTCAATCCCAATTTCTTTGTTCATTCCGCTATTCAACCCGTGAATCAACAAAAACAAAAAGAAGA</genome_strand>
        <mrna_strand>TATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATGAAAAGC-AGGCACTGAAGGATGAAATTACCAT.................................................................................................................................................................................................GT-TATAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695522" ref_strand="+" ref_description="SGN-E695522 [LH_Ea06L24](-)">
      <seq>agtagtgaggaatgtatacatttttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctcagaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaccttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaattccttaccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattgttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctacatgtaatattttgctgcagtgaccctgcaattcctatgaaaagcaggcactgaaggatgaaattaccatgttatgaaagcaagggtccatctctctttctttgctatgttatattattataagagactgattaccttaaagtagagatttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46929" stop="44998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46629" g_stop="46441" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45860" g_stop="45304" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="741" r_length="552" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="745" polyA_stop="757"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E695522" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46629" e_stop="46441"/>
          <exon e_start="45860" e_stop="45304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTCTCTTTCTTTGCTATGTTATATTATGAATGTTAACTGATTACCTTAAAAGTAGAGATTT</genome_strand>
        <mrna_strand>AGTAGTGAGGAATGTATACATTTTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCAGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTACCTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATGAAAAGC-AGGCACTGAAGGATGAAATTACCATGTTATGAAAGCAAGGGTCCATCTCTCTTTCTTTGCTATGTTATATTATTATAAGAGACTGATTACCTT-AAAGTAGAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697148" ref_strand="+" ref_description="SGN-E697148 [LH_Ea10P18](-)">
      <seq>ttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaattccttaccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattgttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctacatgtaatattttgctgcagtgaccctgcaattcctatgaaaagcaggcactgaaggatgaaatttccaagtgatgaaagctttgttccatctctcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47164" stop="45058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46864" g_stop="46776" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="325" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45358" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="824" r_length="499" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="825" polyA_stop="836"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E697148" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46864" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTCTCTT</genome_strand>
        <mrna_strand>TTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATGAAAAGC-AGGCACTGAAGGATGAAATTTCCAAGTGATGAAAGCTTTGTTCCATCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696216" ref_strand="+" ref_description="SGN-E696216 [LH_Ea08I22](-)">
      <seq>gagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaatttccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattccattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaattccttcccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattgttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctacatgtaatattttgctgcagtgcccctgcaattcctatgaaaagcaggccctgaaggatgaaattcccatggtatgaaagctttgttccatctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46977" stop="45062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46785" g_stop="46776" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="246" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45362" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="741" r_length="495" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="753"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E696216" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46785" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTC</genome_strand>
        <mrna_strand>GAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTTCCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTCCATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTCCCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTACATGTAATATTTTGCTGCAGTGCCCCTGCAATTCCTATGAAAAGC-AGGCCCTGAAGGATGAAATTCCCATGGTATGAAAGCTTTGTTCCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272079" ref_strand="-" ref_description="SGN-E272079 [cLEM-8-N12]">
      <seq>tatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaataagttgttgtttcaattttcgttcagtaagtcctagttgtgttttacatgtaatattttgctgcagtgaccctgcaattcctataaaaagcaaggcactgaaaggtgaaattaccatgttatgaaagctttgttccatctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46796" stop="45062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46496" g_stop="46441" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45860" g_stop="45362" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="555" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="573"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E272079" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272079" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46496" e_stop="46441"/>
          <exon e_start="45860" e_stop="45362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTC</genome_strand>
        <mrna_strand>TATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553606" ref_strand="-" ref_description="SGN-E553606 [cTSC-1-K16]">
      <seq>tttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccctttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaataagttgttgtttcaattttcgttcagtaagtcctagttgtgttttacatgtaatattttgctgcagtgaccctgcaattcctataaaaagcaaggcactgaaaggtgaaattaccatgttatgaaagctttgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47240" stop="45067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46940" g_stop="46776" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="401" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45367" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="895" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E553606" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553606" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46940" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCC</genome_strand>
        <mrna_strand>TTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCCTTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702886" ref_strand="+" ref_description="SGN-E702886 [FA19DH05]">
      <seq>gtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaataagttgttgtttcaattttcgttcagtaagtcctagttgtgttttacatgtaatattttgctgcagtgaccctgcaattcctataaaagcaaggcactgaaaggtgaaattaccatgttatgaaagctttgttccaatctcctgtttgtttccannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47210" stop="45051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46910" g_stop="46776" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="371" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45367" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="864" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="886" polyA_stop="902"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E702886" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46910" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCC</genome_strand>
        <mrna_strand>GTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTAT-AAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553712" ref_strand="-" ref_description="SGN-E553712 [cTSC-1-P3]">
      <seq>atttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggttgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctttgcccccttggttttccgaggaagacctggctgcgtatggagctttgtacgaaaaatttggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatttgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaataagttgttgtttcaattttcgttcagtaagtcctagttgtgttttacatgtaatattttgctgcagtgaccccgcaattcctataaaaagcaaggcactgaaaggtgaaattaccatgttatgaaagctttgttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47166" stop="45066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46866" g_stop="46776" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="327" r_length="236" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45367" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="821" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="835"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E553712" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553712" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46866" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCC</genome_strand>
        <mrna_strand>ATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTTGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTTTGCCCCCTTGGTTTTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATTTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATTTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCCGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711387" ref_strand="+" ref_description="SGN-E711387 [FB01DE04]">
      <seq>cttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaacaagttgttgtttcaattttcgttcagcaagtcctagttgtgttttacatgtaatattttgctgcagtgaccctgcaattcctataaaaagcaaggcactgaaaggtgaaattaccatgttatgaaaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47215" stop="45072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46915" g_stop="46776" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="376" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45372" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="865" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E711387" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46915" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTT</genome_strand>
        <mrna_strand>CTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAACAAGTTGTTGTTTCAATTTTCGTTCAGCAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693725" ref_strand="+" ref_description="SGN-E693725 [LH_Ea02B03](-)">
      <seq>ggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaattccttaccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattgttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctacatgtaatattttgctgcagtgaccctgcaattcctatgaaaagcaggcactgaaaaaggaaattaccatgttatgaaagctttttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47153" stop="45066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46853" g_stop="46776" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="314" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45372" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="799" r_length="485" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="804" polyA_stop="820"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E693725" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46853" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTT</genome_strand>
        <mrna_strand>GGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATGAAAAGC-AGGCACTGAAAAAGGAAATTACCATGTTATGAAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694985" ref_strand="+" ref_description="SGN-E694985 [LH_Ea05F15](-)">
      <seq>gttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctacatgtaatattttgctgcagtgaccctgcaattcctatgaaaagcaggcactgaaggaggaaattaccatgttatgaaagctttttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="45842" stop="45066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45542" g_stop="45372" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="172" polyA_stop="187"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E694985" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45542" e_stop="45372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTT</genome_strand>
        <mrna_strand>GTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATGAAAAGC-AGGCACTGAAGGAGGAAATTACCATGTTATGAAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745284" ref_strand="+" ref_description="SGN-E745284 [GI|47105794]">
      <seq>gttacaaataaagcaaaaaatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaataagttgttgtttcaattttcgttcagtaagtcctagttgtgttttacatgtaatattttgctgcagtgaccctgcaattcctataaaaagcaaggcactgaaaggtgaaattaccatgttaagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47700" stop="45077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47401" g_stop="47095" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="475" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="711" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45386" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="1186" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1190" polyA_stop="1213"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E745284" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1186</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47401" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCAT</genome_strand>
        <mrna_strand>GTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556440" ref_strand="+" ref_description="SGN-E556440 [cTSD-3-H7]">
      <seq>gcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaataagttgttgtttcaattttcgttcagtaagtcctagttgtgttttacatgtaatattttgctgcagtgaccctgcaattcctataaaaagcaaggcactgaaaggtgaaattaccatgttatgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46154" stop="45077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45854" g_stop="45386" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="502"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E556440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45854" e_stop="45386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCAT</genome_strand>
        <mrna_strand>GCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551797" ref_strand="+" ref_description="SGN-E551797 [cTSB-1-N6]">
      <seq>agtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaataagttgttgtttcaattttcgttcagtaagtcctagttgtgttttacatgtaatattttgctgcagtgaccctgcaattcctataaaaagcaaggcactgaaaggtgaaattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47175" stop="45088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46875" g_stop="46776" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="336" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45388" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="809" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E551797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46875" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACC</genome_strand>
        <mrna_strand>AGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696521" ref_strand="+" ref_description="SGN-E696521 [LH_Ea09F15](-)">
      <seq>tttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaattccttaccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattgttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctacatgtaatattttgctgcagtgaccctacagttcctatgaaaagcaggcacgaaggataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47222" stop="45093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46922" g_stop="46776" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="383" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45399" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="840" r_length="457" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="841" polyA_stop="857"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E696521" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46922" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAG</genome_strand>
        <mrna_strand>TTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTACATGTAATATTTTGCTGCAGTGACCCTACAGTTCCTATGAAAAGC-AGGCAC-GAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696777" ref_strand="+" ref_description="SGN-E696777 [LH_Ea10A07](-)">
      <seq>aaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcacccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccacccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactccctgacgaggttaatcaactcgtgctcgaattccttaccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattgttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctccatgtaatattttgctgcagtggccctgcaattcctatgaaaagcaggcactgaaggataaaaggtaccatgttatgaaagctttgttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47101" stop="45066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46801" g_stop="46776" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="262" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45399" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="720" r_length="458" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="771"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E696777" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46801" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAG</genome_strand>
        <mrna_strand>AAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCACCCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCACCCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTCCCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTCCATGTAATATTTTGCTGCAGTGGCCCTGCAATTCCTATGAAAAGC-AGGCACTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349471" ref_strand="+" ref_description="SGN-E349471 [cTOS-1-A9]">
      <seq>gagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaatagtaaggttcagtaagtcctcattgttgttgctgctccgtctactaagaacagaagctccaataaggcgttgttattgttgttgttgctctatctactaaggaatagaagttcaaataagttgttgtttcaattttcgttcagtaagtcctagttgtgttttacatgtaatattttgctgcagtgaccctgcaattcctataaaaagcaaggcactgaaagggtgaaattacatgtttatgaagctttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46977" stop="45068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46785" g_stop="46776" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="246" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45860" g_stop="45399" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="708" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E349471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46785" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAG</genome_strand>
        <mrna_strand>GAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696915" ref_strand="+" ref_description="SGN-E696915 [LH_Ea10G01](-)">
      <seq>gaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtccctgcatgaacaagtcaacataacagatccaaccgttcacattccagccctgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaattccttaccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattggggttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctaggggtgttctacatgtaatattttgctgcagtgaccctgcaatgcctatgaaaagcaggcactgaaggagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46814" stop="45093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46514" g_stop="46441" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45860" g_stop="45399" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="532" r_length="458" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="546"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E696915" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46514" e_stop="46441"/>
          <exon e_start="45860" e_stop="45399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAG</genome_strand>
        <mrna_strand>GAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCCCTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGGGGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGGGGTGTTCTACATGTAATATTTTGCTGCAGTGACCCTGCAATGCCTATGAAAAGC-AGGCACTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693075" ref_strand="+" ref_description="SGN-E693075 [LH_Ea10G01]">
      <seq>taggaagacctggctgcgtatggagctttgtacgaaaactttggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaattccttaccaaaaatagtaaggttcagtaagtcctcattgttgttgttgctccgtctactaagaacagaagctcgaataaggcattgttattgttgttgttgctctatctactaagaatagaagttcaaatgttgttttttcgattttctttcagtaagtcctagttgtgttctacatgtaatattttgctgcagtgaccctgcaattcctatgaaaagcaggcactgaaggatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46813" stop="45093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46514" g_stop="46441" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45860" g_stop="45399" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="532" r_length="458" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="547"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E693075" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46514" e_stop="46441"/>
          <exon e_start="45860" e_stop="45399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAG</genome_strand>
        <mrna_strand>TAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAACTTTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTCCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGTTGCTCCGTCTACTAAGAACAGAAGCTCGAATAAGGCATTGTTATTGTTGTTGTTGCTCTATCTACTAA-GAATAGAAGTTCAAAT--GTTGTTTTTTCGATTTTCTTTCAGTAAGTCCTAGTTGTGTTCTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATGAAAAGC-AGGCACTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552167" ref_strand="+" ref_description="SGN-E552167 [cTSB-3-A8]">
      <seq>gagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaaaccattttgttcaagaacactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47670" stop="45320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47370" g_stop="47323" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47322" i_stop="47272" i_length="51">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47271" g_stop="47095" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="225" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="393" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="629" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45860" g_stop="45620" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="869" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E552167" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47370" e_stop="47323"/>
          <exon e_start="47271" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAAT</genome_strand>
        <mrna_strand>GAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAA...................................................ATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAAC-ACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692097" ref_strand="+" ref_description="SGN-E692097 [LH_Ea07N07]">
      <seq>cccttgagctattgcacccgattacagaggatatgggttatcgcgatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaaaatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcgagaacaactacctgacgaggtttatcaactcgtgctcgaattccttaccaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47519" stop="45320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47224" g_stop="47095" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="299" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="535" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45620" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="776" r_length="241" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E692097" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47224" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCG-GATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAAT</genome_strand>
        <mrna_strand>CCCTTGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGCGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAAATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCGAGAACAACTACCTGACGAGGTTTATCAACTCGTGCTCGAATTCCTTACCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703093" ref_strand="+" ref_description="SGN-E703093 [FA20CB08]">
      <seq>gatcaatcttcttacaaataaagcaaaaaatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaagtttagtccctaatctgcagatagttaacttgccagaagaaaccatttttgttcagaacaactacctgacgaagttaatcaactcgtgctcgaatttcttaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47711" stop="45323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47411" g_stop="47095" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="485" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="721" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45623" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="957" r_length="236" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E703093" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47411" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAA</genome_strand>
        <mrna_strand>GATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTC-AAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAA-GAAACCATTTTTGTTCAGAACAACTACCTGACGAAGTTAATCAACTCGTGCTCGAATTTCTTACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702910" ref_strand="+" ref_description="SGN-E702910 [FA20AB09]">
      <seq>taaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaagaaaccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcgaatttcttaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47642" stop="45323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47342" g_stop="47095" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="416" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="652" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45623" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="890" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E702910" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47342" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAA</genome_strand>
        <mrna_strand>TAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAAGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692376" ref_strand="+" ref_description="SGN-E692376 [LH_Ea08I22]">
      <seq>tctcgtgccgaattcggcacgagggattccctgaaatttggtattcttggaggtaccagatgatagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgccagaaggaacccattttgttcaagaacaactacctgacgaggttaatcaactcgtgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47587" stop="45337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47285" g_stop="47095" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="212" r_length="191" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="380" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="616" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45637" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="840" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E692376" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47285" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCG</genome_strand>
        <mrna_strand>AGGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGATAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAACCCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552168" ref_strand="+" ref_description="SGN-E552168 [cTSB-3-A9]">
      <seq>gagcacaaatacattgaagtgaatggtctaaaagctccatataactgaaattggggggtcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctgttgcacccgataacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagataggttacttgccagaaggaaaccattttgttcaagaaacactacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47670" stop="45360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47370" g_stop="47316" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47315" i_stop="47265" i_length="51">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47264" g_stop="47095" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="226" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="394" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="630" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45860" g_stop="45660" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="831" r_length="201" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E552168" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47370" e_stop="47316"/>
          <exon e_start="47264" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCACAAATACATTGAAGTGAATGGTCT-AAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGA</genome_strand>
        <mrna_strand>GAGCACAAATACATTGAAGTGAATGGTCTAAAAGCTCCATATAACTGAAATTGGGG...................................................GGTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTGTTGCACCCGATAACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGGTTACTTGCCAGAAGGAAACCATTTTGTTCAAGAAACACTACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707207" ref_strand="+" ref_description="SGN-E707207 [FA32BD09]">
      <seq>cgataaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgcagatagttaacttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47677" stop="45396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47379" g_stop="47095" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="453" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="689" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="854" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E707207" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47379" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCC</genome_strand>
        <mrna_strand>CGATAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553766" ref_strand="+" ref_description="SGN-E553766 [cTSC-2-C23]">
      <seq>aaatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47684" stop="45412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47384" g_stop="47095" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="458" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="694" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45712" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="843" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E553766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47384" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGC</genome_strand>
        <mrna_strand>AAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693163" ref_strand="+" ref_description="SGN-E693163 [LH_Ea10J17]">
      <seq>cctttagagcataagcacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgatagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccctaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47672" stop="45412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47376" g_stop="47095" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="450" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="686" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45712" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="835" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E693163" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47376" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGC</genome_strand>
        <mrna_strand>CCTTTAGAGCATAAGCACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGATAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554252" ref_strand="+" ref_description="SGN-E554252 [cTSC-3-L15]">
      <seq>agaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtggagtcctcaaaagtttagtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47677" stop="45420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47377" g_stop="47095" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="451" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="687" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45720" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="828" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E554252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47377" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCC</genome_strand>
        <mrna_strand>AGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691894" ref_strand="+" ref_description="SGN-E691894 [LH_Ea07E20]">
      <seq>taaatagagcataagcacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgatagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacattagtagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47675" stop="45440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47376" g_stop="47095" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="450" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="686" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45740" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="807" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E691894" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47376" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGA</genome_strand>
        <mrna_strand>TAAATAGAGCATAAGCACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGATAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551798" ref_strand="+" ref_description="SGN-E551798 [cTSB-1-N7]">
      <seq>aaatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaatttccaggcatcgaagattacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47684" stop="45449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47384" g_stop="47095" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="458" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="694" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45749" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="806" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E551798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47384" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATT</genome_strand>
        <mrna_strand>AAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692681" ref_strand="+" ref_description="SGN-E692681 [LH_Ea09F15]">
      <seq>taatagagcataagcacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgatagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttcctcaaatttccaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47674" stop="45462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47375" g_stop="47095" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="449" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="685" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45762" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="784" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E692681" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47375" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCAT</genome_strand>
        <mrna_strand>TAATAGAGCATAAGCACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGATAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553341" ref_strand="+" ref_description="SGN-E553341 [cTSB-4-P5]">
      <seq>tagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtatcatgcactaacatctactgtatgtttattctatcttgcttagagtcttcaaaaatactgttggttatgtgtcggatcctccaaaacctgtgtatctttagaggatctgacactggtgcaacaacgtttttaaataggaggggccctaacaatataggttttatttgaaccggaatttccccattcactaccctcttatctcactctcatacactataccaacatcattgtggtagtcattcacagccctggtctggagatgcagactttctttttttgataaccgacaaatattggagggagaatggtgcacctttagaactcggtggttaatcggtccaactctactgtactagcattcatgaaagtacaagcaaattcaagatatagccttataggaattgcacatgagagtttatgagaaaatgcatcaactttgtaaaatagtcgaggtgtttgcaagctgactcgaacaaccattataaaagaaaaagaaattataggatttcttttgcttgttgattaatactgaacctcttccttttcttagttgtttatgaatttcatcttgcaataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaagggagagaaagattatttcctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46882" stop="45473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46582" g_stop="45773" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E553341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46582" e_stop="45773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAA</genome_strand>
        <mrna_strand>TAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706931" ref_strand="+" ref_description="SGN-E706931 [FA31CD02]">
      <seq>cttgatcaatcttcttacaaataaagcaaaaaatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaaacagtcaacataacagatcccaccgttcacgttcaagcactgtatattaagggagagaaagattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47714" stop="45479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47414" g_stop="47095" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="488" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="724" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45779" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="806" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E706931" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47414" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTC</genome_strand>
        <mrna_strand>CTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAAACAGTCAACATAACAGATCCCACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692937" ref_strand="+" ref_description="SGN-E692937 [LH_Ea10A07]">
      <seq>cccgtaatagagcataagcacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgatagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacattccagcactgtatattaagggagagaaagattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47676" stop="45479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47379" g_stop="47095" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="453" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="689" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45779" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="771" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E692937" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47379" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTC</genome_strand>
        <mrna_strand>CCCGTAATAGAGCATAAGCACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGATAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACATTCCAGCACTGTATATTAAGGGAGAGAAAGATTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720662" ref_strand="+" ref_description="SGN-E720662 [FC11BH02]">
      <seq>tcggccgaattcccatggggatccgaccattaaaaaggcaaaaaatggaagaaatagagcacaaatacaccgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47696" stop="45497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47388" g_stop="47095" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="332" r_length="294" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="500" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="736" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45797" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="800" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E720662" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47388" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAG</genome_strand>
        <mrna_strand>CAAAAAATGGAAGAAATAGAGCACAAATACACCGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704104" ref_strand="+" ref_description="SGN-E704104 [FA23BE02]">
      <seq>aacaattaaagaaaagactattatatgaagtcactctactaaagttattataaaatcccatacaaacttgatcaatcttcttacaaataaagcaaaaaatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcangttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttcaagcactgtatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47780" stop="45499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47480" g_stop="47095" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="554" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="790" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45799" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="852" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E704104" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47480" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTAAAGAAAAGACTATTATATGAAGTCACTCTACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTA</genome_strand>
        <mrna_strand>AACAATTAAAGAAAAGACTATTATATGAAGTCACTCTACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCANGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243230" ref_strand="+" ref_description="SGN-E243230 [cLEE-2-K4]">
      <seq>cctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47431" stop="45513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47131" g_stop="47095" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="205" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="441" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45813" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="489" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E243230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47131" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCA</genome_strand>
        <mrna_strand>CCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724717" ref_strand="+" ref_description="SGN-E724717 [FC24DH05]">
      <seq>atacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtcaacataacagatccaaccgttcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="46976" stop="45517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45860" g_stop="45817" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="280" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E724717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACG</genome_strand>
        <mrna_strand>ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689885" ref_strand="+" ref_description="SGN-E689885 [LH_Ea02B03]">
      <seq>cctgtaagaaatacagcataatcacattgaagtgaatggtctaaagctccatatatctgaaattggaagtgggttttctccatgtgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccaaatgatacctgtagctgaagcgggttacagatctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgacatttcgtattttgccattctccacaaggagatagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaacagggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaggaagacctggctgcgtatggagctttggacgagaaatctggattccgaactgcattgcaggttccctataggtcactgcatgaacaagtctacataacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47681" stop="45530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47383" g_stop="47095" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="457" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46441" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="693" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45860" g_stop="45830" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="724" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E689885" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47383" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46441"/>
          <exon e_start="45860" e_stop="45830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGAT</genome_strand>
        <mrna_strand>CCTGTAAGAAATACAGCATAATCACATTGAAGTGAATGGTCTAAAGCTCCATATATCTGAAATTGGAAGTGGGTTTTCTCCATGTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAAATGATACCTGTAGCTGAAGCGGGTTACAGATCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGACATTTCGTATTTTGCCATTCTCCACAAGGAGATAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAACAGGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGGACGAGAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGCATGAACAAGTCTACATAACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708103" ref_strand="+" ref_description="SGN-E708103 [FA34DD12]">
      <seq>caaattttgctggatagaaattttagtttttattaagtttaattatatctttgttcctatttcatctctgtgtctgctcaataatgtaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttggggtatgttaatatgtttttgatctctaatttgctttcgtatcattaatagagctctctcttggtcaattttacataggtatacattttaattgtttgcagatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcattgcaggttccctataggtatcatgcactaacatctactgtatgtttattctatcttgcttagagtcttcaaaaatactgttggttatgtgtcggatcctccaaaacctgtgtatctttagaggatctgacactggtgcaacaacgtttttaaataggaggggccctaacaatataggttttatttgaaccggaatttccccattcactaccctcttatctcactctcatacactataccaacatcattgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47331" stop="45904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47032" g_stop="46204" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E708103" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47032" e_stop="46204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGT</genome_strand>
        <mrna_strand>CAAATTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710403" ref_strand="+" ref_description="SGN-E710403 [FA55BC10]">
      <seq>ccatattatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaacgattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcacgaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgcaaaatctggattccgaactgcctttgcacgttccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47688" stop="46143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47389" g_stop="47095" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="463" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46443" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="698" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E710403" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47389" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTG-CATTGCAGGTTCCCTAT</genome_strand>
        <mrna_strand>CCATATTATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAACGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCACGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGCAAAATCTGGATTCCGAACTGCCTTTGCACGTTCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705362" ref_strand="+" ref_description="SGN-E705362 [FA26DF10]">
      <seq>gaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccatatgaaagctgtacctaaagcgggatacacagctattgcacccgattacacaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagagacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgatggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctcctcaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccgatacagtattgaggaatgtatacattcttttctccaaaaatgaattaccaatagccaatgaagatcaagaaatcatggatattgtgcaaccttcaactcctctgcccccttgtattctcccatgaagatctggctgcgtatggacctttgtacgacatatttggattcttaactgcattgcaagttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47679" stop="46143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47379" g_stop="47095" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.848" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="453" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46443" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="688" r_length="235" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E705362" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47379" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTG-GTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTAT</genome_strand>
        <mrna_strand>GAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCATATGAAAGCTGTACCTAAAGCGGGATACACAGCTATTGCACCCGATTACACAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGAGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGATGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCTCAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCGATACAGTATTGAGGAATGTATACATTCTTTTCTCCAAAAATGAATTACCAATAGCCAATGAAGATCAAGAAATCATGGATATTGTGCAACCTTCAACTCCTCTGCCCCCTTGTATTCTCCCATGAAGATCTGGCTGCGTATGGACCTTTGTACGACATATTTGGATTCTTAACTGCATTGCAAGTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691682" ref_strand="+" ref_description="SGN-E691682 [LH_Ea06L24]">
      <seq>tcttacatggattccctgaaatttggtattcttggacgtaccagatgatacctgtatctaaagcgggttacagagctattgcacccgattacataggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtaaccgacctccttgcacttcttgatgctcttaatatctctaaggcttttctcgtcggtaaacactttggatcttttgtcatttcgtatttttccattccccacaaggagagagtctctggatttattgctatgggggggccgatttttgcctccagaacctcttgagtggaagcggggcctccctgaaggattctatattacgagatttgggatacctgtgagagctgaatctgattttggtcgtcttgacgccaaaacactagtgatgaatgtatacattcttttctccaaaagtgaattaccaatagccaatgaatatcatgaaatcatggacattgtgcaaccttcaactcccctgcccccttggttctccgaagaacacctgcctgcctatggagctttgtaccaaaaatctggattcctaactgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47591" stop="46155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47291" g_stop="47095" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.848" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="366" r_length="169" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46455" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="588" r_length="222" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E691682" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47291" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCC-ATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTG</genome_strand>
        <mrna_strand>TCTTACATGGATTCCCTGAAATTTGGTATTCTTGGACGTACCAGATGATACCTGTATCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACATAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTAACCGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GCTTTTCTCGTCGGTAAACACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCCCCACAAGGAGAGAGTCTCTGGATTTATTGCTATGGGGGGGCCGATTTTTGCCTCCAGAACCTCTTGAGTGGAAGCGGGGCCTCCCTGAAGGATTCTATATTACGAGATTTGGG...................................................................................................ATACCTGTGAGAGCTGAATCTGATTTTGGTCGTCTTGACGCCAAAACACTAGTGATGAATGTATACATTCTTTTCTCCAAAAGTGAATTACCAATAGCCAATGAATATCATGAAATCATGGACATTGTGCAACCTTCAACTCCCCTGCCCCCTTGGTTCTCCGAAGAACACCTGCCTGCCTATGGAGCTTTGTACCAAAAATCTGGATTCCTAACTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271066" ref_strand="+" ref_description="SGN-E271066 [cLEM-22-P20]">
      <seq>aaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaagtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattccgaactgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47544" stop="46156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47244" g_stop="47095" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="318" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46456" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="539" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E271066" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47244" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATT</genome_strand>
        <mrna_strand>AAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAA.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703400" ref_strand="+" ref_description="SGN-E703400 [FA21BE12]">
      <seq>atttcagcttatattagtgtggatctactcattaacttgtttatttattaattcagtgtcatttaatagccgttccacctaacatctaatgaaatttggccggcaaaaattaaacaattaaagaaaagactattatatgaagtcactctactaaagttattataaaatcccatacaaacttgatcaatcttcttacaaataaagcaaaaaatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcangaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47892" stop="46167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47592" g_stop="47095" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="666" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46467" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="876" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E703400" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47592" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTTATATTAGTGTGGATCTACTCATTAACTTGTTTATTTATTAATTCAGTGTCATTTAATAGCCGTTCCACCTAACATCTAATGAAATTTGGCCGGCAAAAATTAAACAATTAAAGAAAAGACTATTATATGAAGTCACTCTACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTC</genome_strand>
        <mrna_strand>ATTTCAGCTTATATTAGTGTGGATCTACTCATTAACTTGTTTATTTATTAATTCAGTGTCATTTAATAGCCGTTCCACCTAACATCTAATGAAATTTGGCCGGCAAAAATTAAACAATTAAAGAAAAGACTATTATATGAAGTCACTCTACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCANGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270823" ref_strand="+" ref_description="SGN-E270823 [cLEM-6-A24]">
      <seq>tgttatgggggtgccatttttgcctccaaaacctgttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaactcctctgcccccttggttctccgaggaagacctggctgcgtatggagctttgtacgaaaaatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47160" stop="46171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46860" g_stop="46776" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46676" g_stop="46471" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="291" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E270823" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46860" e_stop="46776"/>
          <exon e_start="46676" e_stop="46471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGG</genome_strand>
        <mrna_strand>TGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTGTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697257" ref_strand="+" ref_description="SGN-E697257 [FA02AB01]">
      <seq>ccattaaacaattaaagaaaagactattatatgaagtcactccactaaagttattataaaatcccatacaaacttgatcaatcttcttacaaataaagcaaaaaatggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatacccaatgaagatcaagaaatcatggaccttgtgcaacctttcactcctctgcccccttggttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47784" stop="46216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47486" g_stop="47095" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="560" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46516" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="721" r_length="161" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E697257" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47486" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAAACAATTAAAGAAAAGACTATTATATGAAGTCACTCTACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTC</genome_strand>
        <mrna_strand>CCATTAAACAATTAAAGAAAAGACTATTATATGAAGTCACTCCACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATACCCAATGAAGATCAAGAAATCATGGACCTTGTGCAACCTTTCACTCCTCTGCCCCCTTGGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271093" ref_strand="+" ref_description="SGN-E271093 [cLEM-22-K15]">
      <seq>gtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcatggacattgtgcaaccttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47652" stop="46237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47352" g_stop="47095" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="426" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46537" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="566" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E271093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47352" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAAC</genome_strand>
        <mrna_strand>GTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235392" ref_strand="+" ref_description="SGN-E235392 [cLED-11-D10]">
      <seq>tagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatcaggaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47672" stop="46258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47372" g_stop="47095" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="446" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46558" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="565" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E235392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47372" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCAT</genome_strand>
        <mrna_strand>TAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243260" ref_strand="+" ref_description="SGN-E243260 [cLEE-2-L16]">
      <seq>cctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatgtatacattcttttctccagaagtgaattaccaatagccaatgaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47431" stop="46268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47131" g_stop="47095" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="205" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46568" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="314" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E243260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47131" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATC</genome_strand>
        <mrna_strand>CCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271337" ref_strand="+" ref_description="SGN-E271337 [cLEM-5-C1]">
      <seq>tgaaattggaagtgggttttctccacttgtggtgttctgacatggattccctgaaatttggtattcttggaggtaccacatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatctttcgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttgacgccaaaacagtagtgaggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47626" stop="46316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47326" g_stop="47095" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="400" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46616" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="461" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E271337" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47326" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATG</genome_strand>
        <mrna_strand>TGAAATTGGAAGTGGGTTTTCTCCACTTGTGGTGTTCTGACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCACATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTCGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390576" ref_strand="+" ref_description="SGN-E390576 [TUS-44-K13]">
      <seq>atagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaggattctatatttcgagatttgggatacctgggagagctgaagctgattttggtcgtcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47673" stop="46339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47373" g_stop="47095" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="447" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46639" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="485" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E390576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47373" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGA</genome_strand>
        <mrna_strand>ATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270472" ref_strand="+" ref_description="SGN-E270472 [cLEM-1-J20]">
      <seq>agaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggcctccctgaaagattctatatttcgagatttgggatacctgngagagctgaagctgattttggtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47677" stop="46344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47377" g_stop="47095" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="451" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46644" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="484" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E270472" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47377" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGT</genome_strand>
        <mrna_strand>AGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAAGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGNGAGAGCTGAAGCTGATTTTGGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554332" ref_strand="+" ref_description="SGN-E554332 [cTSC-3-P17]">
      <seq>gaagtgaatggtctaaagctccatatagctgaaattggaagtgggtttgtctccagttgtggtgttcttacatggatctccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaatgcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaactcacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatattctctaatgtttttctcgttggcaaagactttggatcttttgtcatttcgtatttctccattcaccacaaggagagagtctctggatttattgttatagggggtgccatttttgcctccaaaacctcttgagtttaaaaaaggtctccctgaaggattctatatttcgagatttgggatacctgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47655" stop="46473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47355" g_stop="47095" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.848" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46776" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="433" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46676" g_stop="46666" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="444" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E554332" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47355" e_stop="47095"/>
          <exon e_start="46943" e_stop="46776"/>
          <exon e_start="46676" e_stop="46666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTT-TCTCCAGTTGTGGTGTTCTTACATGGAT-TCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATA-TCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTAT-GGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAG</genome_strand>
        <mrna_strand>GAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTGTCTCCAGTTGTGGTGTTCTTACATGGATCTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAATGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACTCACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATTCTCTAAT.......................................................................................................................................................GTTTTTCTCGTTGGCAAAGACTTTGGATCTTTTGTCATTTCGTATTTCTCCATTCACCACAAGGAGAGAGTCTCTGGATTTATTGTTATAGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGTCTCCCTGAAGGATTCTATATTTCGAGATTTGGG...................................................................................................ATACCTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241749" ref_strand="+" ref_description="SGN-E241749 [cLEE-10-I17]">
      <seq>tccatatagctgaaattggaagcgggttttctccagtggtggtgatcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgccgctaaagcgggttacagagctattgcacccgattacagaggatatggtttatcggatcaaccaacccaacccgcgaaaaccacattcctcgttcttgtgagcgacctccttgcactacctgatgctcttaatatctctaaggtttttctcgttggtaacgactttggatcttttgtcatttaatatttttccattcttcacaaggcgagagtctctggatttattgatatgggggtgcacatttttgcctacaaaacctattgagtttaaaaaaggccttcctgaaggattctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47636" stop="46490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47336" g_stop="47095" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.848" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46790" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="397" r_length="155" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E241749" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47336" e_stop="47095"/>
          <exon e_start="46943" e_stop="46790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGC-CATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATA</genome_strand>
        <mrna_strand>TCCATATAGCTGAAATTGGAAGCGGGTTTTCTCCAGTGGTGGTGATCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGCCGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGTTTATCGGATCAACCAACCCAACCCGCGAAAACCACATTCCTCGTTCTTGTGAGCGACCTCCTTGCACTACCTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAACGACTTTGGATCTTTTGTCATTTAATATTTTTCCATTCTTCACAAGGCGAGAGTCTCTGGATTTATTGATATGGGGGTGCACATTTTTGCCTACAAAACCTATTGAGTTTAAAAAAGGCCTTCCTGAAGGATTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242309" ref_strand="+" ref_description="SGN-E242309 [cLEE-3-E6]">
      <seq>tggaagaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttgcattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47681" stop="46513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47381" g_stop="47095" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46813" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="418" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E242309" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47381" e_stop="47095"/>
          <exon e_start="46943" e_stop="46813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAA</genome_strand>
        <mrna_strand>TGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTGCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240765" ref_strand="+" ref_description="SGN-E240765 [cLED-24-G2]">
      <seq>tagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47672" stop="46514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47372" g_stop="47095" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46814" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="408" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E240765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47372" e_stop="47095"/>
          <exon e_start="46943" e_stop="46814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAA</genome_strand>
        <mrna_strand>TAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240096" ref_strand="+" ref_description="SGN-E240096 [cLED-32-E6]">
      <seq>gcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaaggtttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggatttattgttatgggggtgccatttttgcctccaaaacctcttgagtttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47668" stop="46514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47368" g_stop="47095" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46814" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="404" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E240096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47368" e_stop="47095"/>
          <exon e_start="46943" e_stop="46814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAA</genome_strand>
        <mrna_strand>GCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330957" ref_strand="+" ref_description="SGN-E330957 [cTOD-10-J11]">
      <seq>cattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagatgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccacatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctcttaatatctctaagggttttctcgttggtaaagactttggatcttttgtcatttcgtatttttccattctccacaaggagagagtctctggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47659" stop="46562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47359" g_stop="47095" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46943" g_stop="46862" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="347" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E330957" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47359" e_stop="47095"/>
          <exon e_start="46943" e_stop="46862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAGGTACTTTTAATCTTCTTAGATTAGTGTTTGGTGAAATCATAATTCTTTATAGCTCCACCATATAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTA</genome_strand>
        <mrna_strand>CATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGATGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCACATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG.......................................................................................................................................................GGTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707419" ref_strand="+" ref_description="SGN-E707419 [FA32DG09]">
      <seq>cgatgaaatagagcacaaatacattgaagtgaatggtctaaagctccatatagctgaaattggaagtgggttttctccagttgtggtgttcttacatggattccctgaaatttggtattcttggaggtaccagatgaaagctgtagctaaagcgggttacagagctattgcacccgattacagaggatatgggttatcggatcaaccaacccaacccgagaaaaccacattcctcgatcttgtcagtgacctccttgcacttcttgatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="47679" stop="46809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47380" g_stop="47109" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E707419" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47380" e_stop="47109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTC</genome_strand>
        <mrna_strand>CGATGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745104" ref_strand="+" ref_description="SGN-E745104 [GI|47106024]">
      <seq>tttttttttttttcatttctctccggcgaactccttatcggcgagatcaattcaagtggctgagtggaatagaagaccatggaagaagagttaactgatttactgttggaggctgctggtagaacaaatactggtggaaggaatcgtccacctcattcatctaaaagacatcacaagagttcatattctgatgatggaagtgattccagggatgatgactctgatgatggtcgtgggtattcaggtcgaaagctttctggttcacaagttcctctcaagaagagattggaccctcaagaaagagatgatgatcatagcagccatggagaaggcaatgatggagatggttatggcaatgagagtgatgatgattctattggcagtgatctttacaaggacgatgatgaccggcaaaagcttgctcagatgactgaactggaaagggaaatgatattgactgatcgtgcagcgaagaaatctgacaggagtctgcatgacaaaatgatcaaggatcgggcccaaccaaggaaacaaagctcacctccttcacattctcgtggcatgcgctcatcaacaagagctttggatagggcagctgacagagatgatgcattgaatgagatacgagcaaaacgagcaagacagcagcaggatcccgagggtcaattcaagctgagggatgcagctagaaaaggttctggaagcaggggctattcacctatcaaacgtagaagttttacagctgcatctctaggtagcagtcctaccaggggagaaagtgattcacatagtaatgagggagattcatcagctgatgatggaatggatgacagtgatgatgacaagtcatcaccggagtcacagttgccaacatttgaggatataaaagaaatctctattcgtcgttcaaaactggcaaaatggtttatggagcccttctttgatgagttaattgtgggttgctttgtaagagttggcattgggaggtcaaggtctggtcctatctataggctctgtgtggtccgcaatgttgatgcttcagatcctaatcgacaatacaagctagaaaataaaaccacatccaaatttctaaatgttgtttggggcaatgaaaactctgctgctaggtggcagatggctatgatttcagactctcctcctctgagggatgagtttgatcagtgggtaagggaagtagaacgaagtggtggtcgtatgcctagtaagcaagatgtgttggaaaaaaaagaggccatacagaaatctaacacatttgtttactctgctgacactgtaaagcagatgttgcagcagaaaaaatctgcaacatggaggccacttaatgttgctgctgagaaggatcgtttgagaagggatatggaagtggccaaaatgaagaatgacgaagcagaagtggagaggattaaggcaagactgcaggaactggaggatagcaggaaggttcaagagaaagatgacaaggcccgcaggctggctgagatgaaccggaagaatagggtcgagaatttcaaaaatgcatcagaactcagaccagtgaatcaactgttgaaagctggtgaggctgggtatgatcccttctctagaaggtggactaggtctacaaattattttgcaaaaggtgcatccaatggtgaagctgctgcagcagcagcattggcagctgaagataacaatggggctggtggaactgctgacggaggaatggcagctacagcagcagccttgcaggctgcagcaggcgctgggaagttggtggacacaaatgctcctgtagatcaaggaacagaatcaaatacgctacatgatttcgatctgcctatctcgttggctgtgcttcagaagtttggagggtctcaaggaggccaagcaggatttatggctcgcaaacagaggatagaagcaactgttggatgtagcgttccggagaacgatggcagaagacatgcactaactttaagtgttagtgactacaagagaaggagaggactcctttgagatttactgcttttgttgtttagccaaatgaattgttgttactggggattcatgtactagctgtgaattaagagtacagttactgctatattaaaatatgttgagacttttcttgaatttatgcttctatagcaaagacctggttaaccaggggtcttttaagctttaatgagaaaagcactccttattatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="54606" stop="118242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54906" g_stop="54957" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54958" i_stop="55482" i_length="525">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55483" g_stop="57654" g_length="2172"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="2224" r_length="2172" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E745104" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54906" e_stop="54957"/>
          <exon e_start="55483" e_stop="57654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTCATTTCTCTCCGGCGAACTCCTTATCGGCGAGATCAATTGTATGTATCTAATTCTTCTCTCCGGCAAACTTGTTTTCATTTCTGTTATTCCTTTGGCGATTATGTTAATGGTAAAATTTTTGCTTGATTGAACAGAAATTTGAAATTTTATAATGATTGAAAGAGTTGAATGGATCTGAATCAATGTTTACCTGATTATTTGCTCATTGGCATAGTTTAGTTCTGTTGTTCTATTTTATTCTGTATCCAGACTTAGGGTTTGTATTTGATGTTTTTGAGTTTTGACTGAGAGTTTTATGTTTCCTTGTTTGGTGGTTTTGTTGTTCTCCTTTCGTTTTATAGTCAAATTGATTGTTGTTATGTTTATAATTTGTCGAAATTGCTGATTTTTTTGAAGTTGTCGTTCAGCAAATTGTTTTTGAGTTTTGACTGAGAGTTTTATATTTCCTTGTTTGGTGGTTTCGTTGTTCTCCTTTCGGTTAATAGTCACATTGATTGTTGTTGTGTTTATAATTTGTCAAAATTGTTGATTTTTGCGTGGTTTTTGAATTTGTTGATATTCAGCAAGTGGCTGAGTGGAATAGAAGACCATGGAAGAAGAGTTAACTGATTTACTGTTGGAGGCTGCTGGTAGAACAAATACTGGTGGAAGGAATCGTCCACCTCATTCATCTAAAAGACATCACAAGAGTTCATATTCTGATGATGGAAGTGATTCCAGGGATGATGACTCTGATGATGGTCGTGGGTATTCAGGTCGAAAGCTTTCTGGTTCACAAGTTCCTCTCAAGAAGAGATTGGACCCTCAAGAAAGAGATGATGATCATAGCAGCCATGGAGAAGGCAATGATGGAGATGGTTATGGCAATGAGAGTGATGATGATTCTATTGGCAGTGATCTTTACAAGGACGATGATGACCGGCAAAAGCTTGCTCAGATGACTGAACTGGAAAGGGAAATGATATTGACTGATCGTGCAGCGAAGAAATCTGACAGGAGTCTGCATGACAAAATGATCAAGGATCGGGCCCAACCAAGGAAACAAAGCTCACCTCCTTCACATTCTCGTGGCATGCGCTCATCAACAAGAGCTTTGGATAGGGCAGCTGACAGAGATGATGCATTGAATGAGATACGAGCAAAACGAGCAAGACAGCAGCAGGATCCCGAGGGTCAATTCAAGCTGAGGGATGCAGCTAGAAAAGGTTCTGGAAGCAGGGGCTATTCACCTATCAAACGTAGAAGTTTTACAGCTGCATCTCTAGGTAGCAGTCCTACCAGGGGAGAAAGTGATTCACATAGTAATGAGGGAGATTCATCAGCTGATGATGGAATGGATGACAGTGATGATGACAAGTCATCACCGGAGTCACAGTTGCCAACATTTGAGGATATAAAAGAAATCTCTATTCGTCGTTCAAAACTGGCAAAATGGTTTATGGAGCCCTTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCTAGGTGGCAGATGGCTATGATTTCAGACTCTCCTCCTCTGAGGGATGAGTTTGATCAGTGGGTAAGGGAAGTAGAACGAAGTGGTGGTCGTATGCCTAGTAAGCAAGATGTGTTGGAAAAAAAAGAGGCCATACAGAAATCTAACACATTTGTTTACTCTGCTGACACTGTAAAGCAGATGTTGCAGCAGAAAAAATCTGCAACATGGAGGCCACTTAATGTTGCTGCTGAGAAGGATCGTTTGAGAAGGGATATGGAAGTGGCCAAAATGAAGAATGACGAAGCAGAAGTGGAGAGGATTAAGGCAAGACTGCAGGAACTGGAGGATAGCAGGAAGGTTCAAGAGAAAGATGACAAGGCCCGCAGGCTGGCTGAGATGAACCGGAAGAATAGGGTCGAGAATTTCAAAAATGCATCAGAACTCAGACCAGTGAATCAACTGTTGAAAGCTGGTGAGGCTGGGTATGATCCCTTCTCTAGAAGGTGGACTAGGTCTACAAATTATTTTGCAAAAGGTGCATCCAATGGTGAAGCTGCTGCAGCAGCAGCATTGGCAGCTGAAGATAACAATGGGGCTGGTGGAACTGCTGACGGAGGAATGGCAGCTACAGCAGCAGCCTTGCAGGCTGCAGCAGGCGCTGGGAAGTTGGTGGACACAAATGCTCCTGTAGATCAAGGAACAGAATCAAATACGCTACATGATTTCGATCTGCCTATCTCGTTGGCTGTGCTTCAGAAGTTTGGAGGGTCTCAAGGAGGCCAAGCAGGATTTATGGCTCGCAAACAGAGGATAGAAGCAACTGTTGGATGTAGCGTTCCGGAGAACGATGGCAGAAGACATGCACTAACTTTAAGTGTTAGTGACTACAAGAGAAGGAGAGGACTCCTTTGAGATTTACTGCTTTTGTTGTTTAGCCAAATGAATTGTTGTTACTGGGGATTCATGTACTAGCTGTGAATTAAGAGTACAGTTACTGCTATATTAAAATATGTTGAGACTTTTCTTGAATTTATGCTTCTATAGCAAAGACCTGGTTAACCAGGGGTCTTTTAAGCTTTAATGAGAAAAGCACTCCTTATTATTAACAATATTTCGAGTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTCATTTCTCTCCGGCGAACTCCTTATCGGCGAGATCAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTGAGTGGAATAGAAGACCATGGAAGAAGAGTTAACTGATTTACTGTTGGAGGCTGCTGGTAGAACAAATACTGGTGGAAGGAATCGTCCACCTCATTCATCTAAAAGACATCACAAGAGTTCATATTCTGATGATGGAAGTGATTCCAGGGATGATGACTCTGATGATGGTCGTGGGTATTCAGGTCGAAAGCTTTCTGGTTCACAAGTTCCTCTCAAGAAGAGATTGGACCCTCAAGAAAGAGATGATGATCATAGCAGCCATGGAGAAGGCAATGATGGAGATGGTTATGGCAATGAGAGTGATGATGATTCTATTGGCAGTGATCTTTACAAGGACGATGATGACCGGCAAAAGCTTGCTCAGATGACTGAACTGGAAAGGGAAATGATATTGACTGATCGTGCAGCGAAGAAATCTGACAGGAGTCTGCATGACAAAATGATCAAGGATCGGGCCCAACCAAGGAAACAAAGCTCACCTCCTTCACATTCTCGTGGCATGCGCTCATCAACAAGAGCTTTGGATAGGGCAGCTGACAGAGATGATGCATTGAATGAGATACGAGCAAAACGAGCAAGACAGCAGCAGGATCCCGAGGGTCAATTCAAGCTGAGGGATGCAGCTAGAAAAGGTTCTGGAAGCAGGGGCTATTCACCTATCAAACGTAGAAGTTTTACAGCTGCATCTCTAGGTAGCAGTCCTACCAGGGGAGAAAGTGATTCACATAGTAATGAGGGAGATTCATCAGCTGATGATGGAATGGATGACAGTGATGATGACAAGTCATCACCGGAGTCACAGTTGCCAACATTTGAGGATATAAAAGAAATCTCTATTCGTCGTTCAAAACTGGCAAAATGGTTTATGGAGCCCTTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCTAGGTGGCAGATGGCTATGATTTCAGACTCTCCTCCTCTGAGGGATGAGTTTGATCAGTGGGTAAGGGAAGTAGAACGAAGTGGTGGTCGTATGCCTAGTAAGCAAGATGTGTTGGAAAAAAAAGAGGCCATACAGAAATCTAACACATTTGTTTACTCTGCTGACACTGTAAAGCAGATGTTGCAGCAGAAAAAATCTGCAACATGGAGGCCACTTAATGTTGCTGCTGAGAAGGATCGTTTGAGAAGGGATATGGAAGTGGCCAAAATGAAGAATGACGAAGCAGAAGTGGAGAGGATTAAGGCAAGACTGCAGGAACTGGAGGATAGCAGGAAGGTTCAAGAGAAAGATGACAAGGCCCGCAGGCTGGCTGAGATGAACCGGAAGAATAGGGTCGAGAATTTCAAAAATGCATCAGAACTCAGACCAGTGAATCAACTGTTGAAAGCTGGTGAGGCTGGGTATGATCCCTTCTCTAGAAGGTGGACTAGGTCTACAAATTATTTTGCAAAAGGTGCATCCAATGGTGAAGCTGCTGCAGCAGCAGCATTGGCAGCTGAAGATAACAATGGGGCTGGTGGAACTGCTGACGGAGGAATGGCAGCTACAGCAGCAGCCTTGCAGGCTGCAGCAGGCGCTGGGAAGTTGGTGGACACAAATGCTCCTGTAGATCAAGGAACAGAATCAAATACGCTACATGATTTCGATCTGCCTATCTCGTTGGCTGTGCTTCAGAAGTTTGGAGGGTCTCAAGGAGGCCAAGCAGGATTTATGGCTCGCAAACAGAGGATAGAAGCAACTGTTGGATGTAGCGTTCCGGAGAACGATGGCAGAAGACATGCACTAACTTTAAGTGTTAGTGACTACAAGAGAAGGAGAGGACTCCTTTGAGATTTACTGCTTTTGTTGTTTAGCCAAATGAATTGTTGTTACTGGGGATTCATGTACTAGCTGTGAATTAAGAGTACAGTTACTGCTATATTAAAATATGTTGAGACTTTTCTTGAATTTATGCTTCTATAGCAAAGACCTGGTTAACCAGGGGTCTTTTAAGCTTTAATGAGAAAAGCACTCCTTATTATCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200714" ref_strand="+" ref_description="SGN-E200714 [cLEC-9-A23]">
      <seq>tcaattcaagctgagggatgcagctagaaaaggttctggaagcaggggctattcacctatcaaacgtagaagttttacagctgcatctctaggtagcagtcctaccaggggagaaagtgattcacatagtaatgagggagattcatcagctgatgatggaatggatgacagtgatgatgacaagtcatcaccggagtcacattgccaacatttgaggatataaaagaaatctctattcgtcgttcaaaactggcaaaatggtttatggagcccttctttgatgagttaattgtgggttgctttgtaagagttggcattgggaggtcaaggtctggtcctatctataggctctgtgtggtccgcaatgttgatgcttcagatcctaatcgacaatacaagctagaaaataaaaccacatccaaatttctaaatgttgtttggggcaatgaaaactctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="55793" stop="56855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56093" g_stop="56555" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E200714" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56093" e_stop="56555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCAAGCTGAGGGATGCAGCTAGAAAAGGTTCTGGAAGCAGGGGCTATTCACCTATCAAACGTAGAAGTTTTACAGCTGCATCTCTAGGTAGCAGTCCTACCAGGGGAGAAAGTGATTCACATAGTAATGAGGGAGATTCATCAGCTGATGATGGAATGGATGACAGTGATGATGACAAGTCATCACCGGAGTCACAGTTGCCAACATTTGAGGATATAAAAGAAATCTCTATTCGTCGTTCAAAACTGGCAAAATGGTTTATGGAGCCCTTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCT</genome_strand>
        <mrna_strand>TCAATTCAAGCTGAGGGATGCAGCTAGAAAAGGTTCTGGAAGCAGGGGCTATTCACCTATCAAACGTAGAAGTTTTACAGCTGCATCTCTAGGTAGCAGTCCTACCAGGGGAGAAAGTGATTCACATAGTAATGAGGGAGATTCATCAGCTGATGATGGAATGGATGACAGTGATGATGACAAGTCATCACCGGAGTCACA-TTGCCAACATTTGAGGATATAAAAGAAATCTCTATTCGTCGTTCAAAACTGGCAAAATGGTTTATGGAGCCCTTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727480" ref_strand="+" ref_description="SGN-E727480 [LA14DC07]">
      <seq>cgttctttgatgagttaattgtgggttgctttgtaagagttggcattgggaggtcaaggtctggtcctatctataggctctgtgtggtccgcaatgttgatgcttcagatcctaatcgacaatacaagctagaaaataaaaccacatccaaatttctaaatgttgtttggggcaatgaaaactctgctgctaggtggcagatggctatgatttcagactctcctcctctgagggatgagtttgatcagtgggtaagggaagtagaacgaagtggtggtcgtatgcctagtaagcaagatgtgttggaaaaaaaagaggccatacagaaatctaacacatttgtttactctgctgacactgtaaagcagatgttgcagcagaaaaaatctgcaacatggaggccacttaatgttgctgctgagaaggatcgtttgagaagggatatggaagtggccaaaatgaagaatgacgaagcagaagtggagaggattaaggcaagactgcaggaactggaggatagcaggaaggttcaagagaaagatgacaaggcccgcaggctggctgagatgaaccggaagaatagggtcgagaatttcaaaaatgcatcagaactcagaccagtgaatcaactgttgaaagctggtgaggctgggtatgatcccttctctagaaggtggactaggtctacaaattattttgcaaaaggtgcatccaatggtgaagctgctgcagcagcagcattggcagctgaagataacaatggggctggtggaactgctgacggaggaatggcagctacagcagcagccttgcangctgcagcaggcgctgggaagttggtggacacaaatgctcctgtagatcagggaacagaatcaaatacgctacatgatttcgatctgcctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="56067" stop="57573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56365" g_stop="57273" g_length="909"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="909" r_length="909" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E727480" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56365" e_stop="57273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCTAGGTGGCAGATGGCTATGATTTCAGACTCTCCTCCTCTGAGGGATGAGTTTGATCAGTGGGTAAGGGAAGTAGAACGAAGTGGTGGTCGTATGCCTAGTAAGCAAGATGTGTTGGAAAAAAAAGAGGCCATACAGAAATCTAACACATTTGTTTACTCTGCTGACACTGTAAAGCAGATGTTGCAGCAGAAAAAATCTGCAACATGGAGGCCACTTAATGTTGCTGCTGAGAAGGATCGTTTGAGAAGGGATATGGAAGTGGCCAAAATGAAGAATGACGAAGCAGAAGTGGAGAGGATTAAGGCAAGACTGCAGGAACTGGAGGATAGCAGGAAGGTTCAAGAGAAAGATGACAAGGCCCGCAGGCTGGCTGAGATGAACCGGAAGAATAGGGTCGAGAATTTCAAAAATGCATCAGAACTCAGACCAGTGAATCAACTGTTGAAAGCTGGTGAGGCTGGGTATGATCCCTTCTCTAGAAGGTGGACTAGGTCTACAAATTATTTTGCAAAAGGTGCATCCAATGGTGAAGCTGCTGCAGCAGCAGCATTGGCAGCTGAAGATAACAATGGGGCTGGTGGAACTGCTGACGGAGGAATGGCAGCTACAGCAGCAGCCTTGCAGGCTGCAGCAGGCGCTGGGAAGTTGGTGGACACAAATGCTCCTGTAGATCAAGGAACAGAATCAAATACGCTACATGATTTCGATCTGCCTATCT</genome_strand>
        <mrna_strand>CGTTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCTAGGTGGCAGATGGCTATGATTTCAGACTCTCCTCCTCTGAGGGATGAGTTTGATCAGTGGGTAAGGGAAGTAGAACGAAGTGGTGGTCGTATGCCTAGTAAGCAAGATGTGTTGGAAAAAAAAGAGGCCATACAGAAATCTAACACATTTGTTTACTCTGCTGACACTGTAAAGCAGATGTTGCAGCAGAAAAAATCTGCAACATGGAGGCCACTTAATGTTGCTGCTGAGAAGGATCGTTTGAGAAGGGATATGGAAGTGGCCAAAATGAAGAATGACGAAGCAGAAGTGGAGAGGATTAAGGCAAGACTGCAGGAACTGGAGGATAGCAGGAAGGTTCAAGAGAAAGATGACAAGGCCCGCAGGCTGGCTGAGATGAACCGGAAGAATAGGGTCGAGAATTTCAAAAATGCATCAGAACTCAGACCAGTGAATCAACTGTTGAAAGCTGGTGAGGCTGGGTATGATCCCTTCTCTAGAAGGTGGACTAGGTCTACAAATTATTTTGCAAAAGGTGCATCCAATGGTGAAGCTGCTGCAGCAGCAGCATTGGCAGCTGAAGATAACAATGGGGCTGGTGGAACTGCTGACGGAGGAATGGCAGCTACAGCAGCAGCCTTGCANGCTGCAGCAGGCGCTGGGAAGTTGGTGGACACAAATGCTCCTGTAGATCAGGGAACAGAATCAAATACGCTACATGATTTCGATCTGCCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726123" ref_strand="+" ref_description="SGN-E726123 [LA10BE10]">
      <seq>ttctttgatgagttaattgtgggttgctttgtaagagttggcattgggaggtcaaggtctggtcctatctataggctctgtgtggtccgcaatgttgatgcttcagatcctaatcgacaatacaagctagaaaataaaaccacatccaaatttctaaatgttgtttggggcaatgaaaactctgctgctaggtggcagatggctatgatttcagactctcctcctctgagggatgagtttgatcagtgggtaagggaagtagaacgaagtggtggtcgtatgcctagtaagcaagatgtgttggaaaaaaaagaggccatacagaaatctaacacatttgtttactctgctgacactgtaaagcagatgttgcagcagaaaaaatctgcaacatggaggccacttaatgttgctgctgagaaggatcgtttgagaagggatatggaagtggccaaatgaagatgacgagcagagtcgagaggattaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="56067" stop="57161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56367" g_stop="56861" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E726123" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56367" e_stop="56861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCTAGGTGGCAGATGGCTATGATTTCAGACTCTCCTCCTCTGAGGGATGAGTTTGATCAGTGGGTAAGGGAAGTAGAACGAAGTGGTGGTCGTATGCCTAGTAAGCAAGATGTGTTGGAAAAAAAAGAGGCCATACAGAAATCTAACACATTTGTTTACTCTGCTGACACTGTAAAGCAGATGTTGCAGCAGAAAAAATCTGCAACATGGAGGCCACTTAATGTTGCTGCTGAGAAGGATCGTTTGAGAAGGGATATGGAAGTGGCCAAAATGAAGAATGACGAAGCAGAAGTGGAGAGGATTAAGGCA</genome_strand>
        <mrna_strand>TTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCTAGGTGGCAGATGGCTATGATTTCAGACTCTCCTCCTCTGAGGGATGAGTTTGATCAGTGGGTAAGGGAAGTAGAACGAAGTGGTGGTCGTATGCCTAGTAAGCAAGATGTGTTGGAAAAAAAAGAGGCCATACAGAAATCTAACACATTTGTTTACTCTGCTGACACTGTAAAGCAGATGTTGCAGCAGAAAAAATCTGCAACATGGAGGCCACTTAATGTTGCTGCTGAGAAGGATCGTTTGAGAAGGGATATGGAAGTGGCC-AAATGAAG-ATGACG-AGCAG-AGTCGAGAGGATT-AGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728122" ref_strand="+" ref_description="SGN-E728122 [LA16DB04]">
      <seq>gcagcttcaccattggcagttgaagataacaatggggctggtggaactgctgacggaggaatggcagctacagcagcagccttgcaggctgcagcaggcgctgggaagttggtggacacaaatgctcctgtagatcaaggaacagaatcaaatacgctacatgatttcgatctgcctatctcgttggctgtgcttcagaagtttggagggtctcaaggaggccaagcaggatttatggctcgcaaacagaggatagaagcaactgttggatgtagcgttccggagaacgatggcagaagacatgcactaactttaagtgttagtgactacaagagaaggagaggactcctttgagatttactgcttttgttgtttagccaaatgaattgttgttactggggattcatgtactagctgtgaattaagagtacagttactgctatattaaaatatgttgagacttttcttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="56793" stop="57863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57093" g_stop="57562" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="485"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E728122" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57093" e_stop="57562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAGCATTGGCAGCTGAAGATAACAATGGGGCTGGTGGAACTGCTGACGGAGGAATGGCAGCTACAGCAGCAGCCTTGCAGGCTGCAGCAGGCGCTGGGAAGTTGGTGGACACAAATGCTCCTGTAGATCAAGGAACAGAATCAAATACGCTACATGATTTCGATCTGCCTATCTCGTTGGCTGTGCTTCAGAAGTTTGGAGGGTCTCAAGGAGGCCAAGCAGGATTTATGGCTCGCAAACAGAGGATAGAAGCAACTGTTGGATGTAGCGTTCCGGAGAACGATGGCAGAAGACATGCACTAACTTTAAGTGTTAGTGACTACAAGAGAAGGAGAGGACTCCTTTGAGATTTACTGCTTTTGTTGTTTAGCCAAATGAATTGTTGTTACTGGGGATTCATGTACTAGCTGTGAATTAAGAGTACAGTTACTGCTATATTAAAATATGTTGAGACTTTTCTTGA</genome_strand>
        <mrna_strand>GCAGCTTCACCATTGGCAGTTGAAGATAACAATGGGGCTGGTGGAACTGCTGACGGAGGAATGGCAGCTACAGCAGCAGCCTTGCAGGCTGCAGCAGGCGCTGGGAAGTTGGTGGACACAAATGCTCCTGTAGATCAAGGAACAGAATCAAATACGCTACATGATTTCGATCTGCCTATCTCGTTGGCTGTGCTTCAGAAGTTTGGAGGGTCTCAAGGAGGCCAAGCAGGATTTATGGCTCGCAAACAGAGGATAGAAGCAACTGTTGGATGTAGCGTTCCGGAGAACGATGGCAGAAGACATGCACTAACTTTAAGTGTTAGTGACTACAAGAGAAGGAGAGGACTCCTTTGAGATTTACTGCTTTTGTTGTTTAGCCAAATGAATTGTTGTTACTGGGGATTCATGTACTAGCTGTGAATTAAGAGTACAGTTACTGCTATATTAAAATATGTTGAGACTTTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330868" ref_strand="+" ref_description="SGN-E330868 [cTOD-10-B22]">
      <seq>aaaacagggctcaaaacccaagaacatttttggctactgaaaatttccaaaaagtactaaaaaaagacatcttttttcaattttactgcacttttttgccgcctccatcactgaaaaaatgttgttcaacttcctctactatcatcttcatcactttctcatagctgaaaattgcttcagaaaatgaaaaaggagacatttttaaatttccaagaaaagaccatggatggtgtcattaagaggaggtctttatatgcaattggttcttgttttctgctttttctcttagcttacaacagttccactgtgttctatgttcaagtccctgttccagggaactcttcgccggagatttcaagttttttaactgaaaatgtcgccagaaaatcaagaaagttggtttctttatctacttcagctaaacgttcatcctctgcgatatatgctgtaaaagaagaaaccccacttgtaaagccgaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="61888" stop="62970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62188" g_stop="62670" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E330868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62188" e_stop="62670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGGGCTCAAAACCCAAGAACATTTTTGGCTACTGAAAATTTCCAAAAAGTACTAAAAAAAGACATCTTTTTTCAATTTTACTGCACTTTTTTGCCGCCTCCATCACTGAAAAAATGTTGTTCAACTTCCTCTACTATCATCTTCATCACTTTCTCATAGCTGAAAATTGCTTCAGAAAATGAAAAAGGAGACATTTTTAAATTTCCAAGAAAAGACCATGGATGGTGTCATTAAGAGGAGGTCTTTATATGCAATTGGTTCTTGTTTTCTGCTTTTTCTCTTAGCTTACAACAGTTCCACTGTGTTCTATGTTCAAGTCCCTGTTCCAGGGAACTCTTCGCCGGAGATTTCAAGTTTTTTAACTGAAAATGTCGCCAGAAAATCAAGAAAGTTGGTTTCTTTATCTACTTCAGCTAAACGTTCATCCTCTGCGATATATGCTGTAAAAGAAGAAACCCCACTTGTAAAGCCGAACACC</genome_strand>
        <mrna_strand>AAAACAGGGCTCAAAACCCAAGAACATTTTTGGCTACTGAAAATTTCCAAAAAGTACTAAAAAAAGACATCTTTTTTCAATTTTACTGCACTTTTTTGCCGCCTCCATCACTGAAAAAATGTTGTTCAACTTCCTCTACTATCATCTTCATCACTTTCTCATAGCTGAAAATTGCTTCAGAAAATGAAAAAGGAGACATTTTTAAATTTCCAAGAAAAGACCATGGATGGTGTCATTAAGAGGAGGTCTTTATATGCAATTGGTTCTTGTTTTCTGCTTTTTCTCTTAGCTTACAACAGTTCCACTGTGTTCTATGTTCAAGTCCCTGTTCCAGGGAACTCTTCGCCGGAGATTTCAAGTTTTTTAACTGAAAATGTCGCCAGAAAATCAAGAAAGTTGGTTTCTTTATCTACTTCAGCTAAACGTTCATCCTCTGCGATATATGCTGTAAAAGAAGAAACCCCACTTGTAAAGCCGAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248927" ref_strand="+" ref_description="SGN-E248927 [cLEF-49-N11]">
      <seq>aaaacccaagaacatttttggctactgaaaatttccaaaaagtactaaaaaaagacatcttttttcaattttactgcacttttttgccgcctccatcactgaaaaaatgttgttcaacttcctctactatcatcttcatcactttctcatagctgaaaattgcttcagaaaatgaaaaaggagacatttttaaatttccaagaaaagaccatggatggtgtcattaagaggaggtctttatatgcaattggttcttgttttctgctttttctcttagcttacaacagttccactgtgttctatgttcaagtccctgttccagggaactcttcgccggagatttcaagttttttaactgaaaatgtcgccagaaaatcaagaaagttggtttctttatctacttcagctaaacgttcatcctctgcgatatatgctgtaaaagaagaaaccccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="61900" stop="62953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62200" g_stop="62653" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E248927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62200" e_stop="62653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCAAGAACATTTTTGGCTACTGAAAATTTCCAAAAAGTACTAAAAAAAGACATCTTTTTTCAATTTTACTGCACTTTTTTGCCGCCTCCATCACTGAAAAAATGTTGTTCAACTTCCTCTACTATCATCTTCATCACTTTCTCATAGCTGAAAATTGCTTCAGAAAATGAAAAAGGAGACATTTTTAAATTTCCAAGAAAAGACCATGGATGGTGTCATTAAGAGGAGGTCTTTATATGCAATTGGTTCTTGTTTTCTGCTTTTTCTCTTAGCTTACAACAGTTCCACTGTGTTCTATGTTCAAGTCCCTGTTCCAGGGAACTCTTCGCCGGAGATTTCAAGTTTTTTAACTGAAAATGTCGCCAGAAAATCAAGAAAGTTGGTTTCTTTATCTACTTCAGCTAAACGTTCATCCTCTGCGATATATGCTGTAAAAGAAGAAACCCCAC</genome_strand>
        <mrna_strand>AAAACCCAAGAACATTTTTGGCTACTGAAAATTTCCAAAAAGTACTAAAAAAAGACATCTTTTTTCAATTTTACTGCACTTTTTTGCCGCCTCCATCACTGAAAAAATGTTGTTCAACTTCCTCTACTATCATCTTCATCACTTTCTCATAGCTGAAAATTGCTTCAGAAAATGAAAAAGGAGACATTTTTAAATTTCCAAGAAAAGACCATGGATGGTGTCATTAAGAGGAGGTCTTTATATGCAATTGGTTCTTGTTTTCTGCTTTTTCTCTTAGCTTACAACAGTTCCACTGTGTTCTATGTTCAAGTCCCTGTTCCAGGGAACTCTTCGCCGGAGATTTCAAGTTTTTTAACTGAAAATGTCGCCAGAAAATCAAGAAAGTTGGTTTCTTTATCTACTTCAGCTAAACGTTCATCCTCTGCGATATATGCTGTAAAAGAAGAAACCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356201" ref_strand="+" ref_description="SGN-E356201 [cTOS-20-D19]">
      <seq>ttgtgtcaagggtaagtggaagagatggatacaatttcactgttttgcccccaatggctttttatccagttgattggaataggattggtagtctatttcttgggccgaggaacgagactcagtcgaaatggttgctcttgaaactccagcaaattcagagtggaagtttggcagtgcatctttggaacaagcaaagtagagaacttgaggttgaagaaggaagcataattcaacatataatgtcagattgttgtgttttctgcaattcttactcatcaaagttgtaagtatacaccacgtaaaatcagcgtcagcgtgttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="63113" stop="64036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63413" g_stop="63736" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E356201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63413" e_stop="63736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTCAAGGGTAAGTGGAAGAGATGGATACAATTTCACTGTTTTGCCCCCAATGGCTTTTTATCCAGTTGATTGGAATAGGATTGGTAGTCTATTTCTTGGGCCGAGGAACGAGACTCAGTCGAAATGGTTGCTCTTGAAACTCCAGCAAATTCAGAGTGGAAGTTTGGCAGTGCATCTTTGGAACAAGCAAAGTAGAGAACTTGAGGTTGAAGAAGGAAGCATAATTCAACATATAATGTCAGATTGTTGTGTTTTCTGCAATTCTTACTCATCAAAGTTGTAAGTATACACCACGTAAAATCAGCGTCAGCGTGTTTTAT</genome_strand>
        <mrna_strand>TTGTGTCAAGGGTAAGTGGAAGAGATGGATACAATTTCACTGTTTTGCCCCCAATGGCTTTTTATCCAGTTGATTGGAATAGGATTGGTAGTCTATTTCTTGGGCCGAGGAACGAGACTCAGTCGAAATGGTTGCTCTTGAAACTCCAGCAAATTCAGAGTGGAAGTTTGGCAGTGCATCTTTGGAACAAGCAAAGTAGAGAACTTGAGGTTGAAGAAGGAAGCATAATTCAACATATAATGTCAGATTGTTGTGTTTTCTGCAATTCTTACTCATCAAAGTTGTAAGTATACACCACGTAAAATCAGCGTCAGCGTGTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268307" ref_strand="+" ref_description="SGN-E268307 [cLEM-3-M16]">
      <seq>gtaagtggaagagatggataccaatttcactgttttgcccccaatggctttttatccagttgattggaataggattggtagtctatttcttgggccgaggaacgagactcagtcgaaatggttgctcttgaaactccagcaaattcagagtggaagtttggcagtgcatctttggaacaagcaaagtagagaacttgaggttgaagaaggaagcataattcaacatataatgtcagattgttgtgttttctgcaattcttactcatcaaagttgtaagtatacaccacgtaaaatcagcgtcagcgtgttttattcttcattaattgttgtaggataatggaccacctaagctcattacataggttgtcttgaagaaattaggtggtacagaaataatgcaggatccatgtattctacttcattgtcgatgtgattgaacaaattatacaaagatagaaaagcagaattattgctaagttccaaannaaaaaaaaaaaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="63124" stop="64206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63424" g_stop="63905" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="515"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E268307" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63424" e_stop="63905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTGGAAGAGATGGATA-CAATTTCACTGTTTTGCCCCCAATGGCTTTTTATCCAGTTGATTGGAATAGGATTGGTAGTCTATTTCTTGGGCCGAGGAACGAGACTCAGTCGAAATGGTTGCTCTTGAAACTCCAGCAAATTCAGAGTGGAAGTTTGGCAGTGCATCTTTGGAACAAGCAAAGTAGAGAACTTGAGGTTGAAGAAGGAAGCATAATTCAACATATAATGTCAGATTGTTGTGTTTTCTGCAATTCTTACTCATCAAAGTTGTAAGTATACACCACGTAAAATCAGCGTCAGCGTGTTTTATTCTTCATTAATTGTTGTAGGATAATGGACCACCTAAGCTCATTACATAGGTTGTCTTGAAGAAATTAGGTGGTACAGAAATAATGCAGGATCCATGTATTCTACTTCATTGTCGATGTGATTGAACAAATTATACAAAGATAGAAAAGCAGAATTATTGCTAAGTTCCC</genome_strand>
        <mrna_strand>GTAAGTGGAAGAGATGGATACCAATTTCACTGTTTTGCCCCCAATGGCTTTTTATCCAGTTGATTGGAATAGGATTGGTAGTCTATTTCTTGGGCCGAGGAACGAGACTCAGTCGAAATGGTTGCTCTTGAAACTCCAGCAAATTCAGAGTGGAAGTTTGGCAGTGCATCTTTGGAACAAGCAAAGTAGAGAACTTGAGGTTGAAGAAGGAAGCATAATTCAACATATAATGTCAGATTGTTGTGTTTTCTGCAATTCTTACTCATCAAAGTTGTAAGTATACACCACGTAAAATCAGCGTCAGCGTGTTTTATTCTTCATTAATTGTTGTAGGATAATGGACCACCTAAGCTCATTACATAGGTTGTCTTGAAGAAATTAGGTGGTACAGAAATAATGCAGGATCCATGTATTCTACTTCATTGTCGATGTGATTGAACAAATTATACAAAGATAGAAAAGCAGAATTATTGCTAAGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216354" ref_strand="+" ref_description="SGN-E216354 [cLEL-13-G8](-)">
      <seq>agtgcatctttggaacaagcaaagtagagaacttgaggttgaagaaggaagcataattcaacatataatgtcagattgttgtgttttctgcaattcttactcatcaaagttgtaagtatacaccacgtaaaatcagcgtcagcgtgttttattcttcattaattgttgtaggataatggaccacctaagctcattacataggttgtcttgaagaaattaggtggtacagaaataatgcaggatccatgtattctacttcattgtcgatgtgattgaacaaattatacaaagatagaaaagcagaattattgctaagttcccattgactgaaatgctattggccccatgatttgattggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="63285" stop="118242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63585" g_stop="63949" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63950" i_stop="64371" i_length="422">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64372" g_stop="64385" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="379" r_length="14" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E216354" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63585" e_stop="63949"/>
          <exon e_start="64372" e_stop="64385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCATCTTTGGAACAAGCAAAGTAGAGAACTTGAGGTTGAAGAAGGAAGCATAATTCAACATATAATGTCAGATTGTTGTGTTTTCTGCAATTCTTACTCATCAAAGTTGTAAGTATACACCACGTAAAATCAGCGTCAGCGTGTTTTATTCTTCATTAATTGTTGTAGGATAATGGACCACCTAAGCTCATTACATAGGTTGTCTTGAAGAAATTAGGTGGTACAGAAATAATGCAGGATCCATGTATTCTACTTCATTGTCGATGTGATTGAACAAATTATACAAAGATAGAAAAGCAGAATTATTGCTAAGTTCCCATTGACTGAAATGCTATTGGCCCCATGATTTGATTGGATAAATATCTTGATTTTTTTTGCTTGGGTTTGGCAAAGACTTCAGTTTTCTTTAATATCAAAGTTACAACAGTAGTTGGGAGGGCGGCTATCAGCTGGTGAGTTGATTCAGGACCACTATATGTAATGTGATGCTGTTAGCTTATCCGCTGTATAAACAGTTGAGCTATTACTGATCAGCTCGTGCCCTCACTTTAATCATGGTCCAAAATTCGTTCACATTGTTGTTCATGAAATCATGCTAGCTCGAGGGAAGCAAGTGAAATGTTCCCCTCTAAATCTGTAGGAGACAGGGTGCTACCTGTATGATAATAGGTCAGTAAGAAAGTTTCTGCTGGAATTATTCTAAGAATTATTCATAAACTACCGTACTAACACTGATAATTCATAATTCTATCTGGTTAGTTCCATGTGAATGTAATTTGTGCAGAAAAGTCATGGAGA</genome_strand>
        <mrna_strand>AGTGCATCTTTGGAACAAGCAAAGTAGAGAACTTGAGGTTGAAGAAGGAAGCATAATTCAACATATAATGTCAGATTGTTGTGTTTTCTGCAATTCTTACTCATCAAAGTTGTAAGTATACACCACGTAAAATCAGCGTCAGCGTGTTTTATTCTTCATTAATTGTTGTAGGATAATGGACCACCTAAGCTCATTACATAGGTTGTCTTGAAGAAATTAGGTGGTACAGAAATAATGCAGGATCCATGTATTCTACTTCATTGTCGATGTGATTGAACAAATTATACAAAGATAGAAAAGCAGAATTATTGCTAAGTTCCCATTGACTGAAATGCTATTGGCCCCATGATTTGATTGGATAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719675" ref_strand="+" ref_description="SGN-E719675 [FC08CC02]">
      <seq>aatcggccgaattggactccctccatttttctttctcttcaccttctcctataactccaccggaaaaaaaatatctcaactgaatatctacattaatctcaaacggccggagtagtatgccggttgaagtagcaaacgtagtgacagaagccattggtaatccaaaaggcgatttgagacctcaaaaccctaacgccgcctctaagaagtcgaaggaaagcgaccgacgccgtaggcggaggaagcagaaaaagaacaaggcggcgtctaaggttgcaaatggagaaaacagtgataacgctgcgcaagacgcgaacggcggcgctgaggatagttccaaggaaaattccgatcctcaaaagtctttggttcaagttgaagtagaatatgtaccaaagaaggccgaattagatggtgagttcgatgaggaattcaggaaggtttttgagaaattcactttcacggatgctactggttctgaggagaatgataaaaaggatgaaactgctgctgatggagcctcaaagaaaaaggcggattctgattctgaggaggaagaagaggatgcacagcaaaaggagaagggagtctcgaacaaaaagaaaaaacttcagcgtaggatgaaaattgcagaactgaaacaaatctctatgaagcctgatgttgttgaggtatgggatgccactgcagcagaccctaagctcctggtatttctgaaatcttaccggaatactgttcctgttccaagacactggtgtcagaaacggaaatttttgcaggggaagcgtgggattgagaaacagccatttcaacttcctgactttatagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="69311" stop="75632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69600" g_stop="69961" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69962" i_stop="73298" i_length="3337">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73299" g_stop="73418" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="482" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73419" i_stop="73511" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73512" g_stop="73637" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="608" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73638" i_stop="73736" i_length="99">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73737" g_stop="73799" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="671" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73800" i_stop="74576" i_length="777">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74577" g_stop="74684" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="779" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74685" i_stop="75279" i_length="595">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75280" g_stop="75332" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="832" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E719675" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69600" e_stop="69961"/>
          <exon e_start="73299" e_stop="73418"/>
          <exon e_start="73512" e_stop="73637"/>
          <exon e_start="73737" e_stop="73799"/>
          <exon e_start="74577" e_stop="74684"/>
          <exon e_start="75280" e_stop="75332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCATCTTTCGACTCCCTCCATTTTTCTTTCTCTTCACCTTCTCCTATAACTCCACCGGAAAAAAAATATCTCAACTGAATATCTACATTAATCTCAAACGGCCGGAGTAGTATGCCGGTTGAAGTAGCAAACGTAGTGACAGAAGCCATTGGTAATCCAAAAGGCGATTTGAGACCTCAAAACCCTAACGCCGCCTCTAAGAAGTCGAAGGAAAGCGACCGACGCCGTAGGCGGAGGAAGCAGAAGAAGAACAAGGCGGCGTCTAAGGTTGCAAATGGAGAAGACAGTGATAACGCTGCGCAAGACGCGAACGGCGGCGCTGAGGATAGTTCCAAGGAAAATTCCGATCCTCAGAAGGTACTGTCTGCTTATCCTTAATGTTAGGTATACGGTGTTCTGGATTTTTGGTGAATATGGATTGCTTAGTGTTAGTTGATGAGTTAGTTTGTTGTGGAAATAGATCTTCTGTGTATGAATGAGTTCAGGTACTTGTGTTGTAGCTTGATATTACTAAGGTTTTGTGTTGAGGAACTTCTTAGCTTCAAATGTTGAGACTCTTTTCCTTTAAAAAGATCGAGCTGAGTCAGTTGTAGTTTTCTAGTGATTGTGGTAGTTTCAAAACGGTAGTCTAAGAAGAATTTCTTGTTATGTTTTGTGATTTGGGAAACAAGATAAGAGGAGGAGGAGGCAACATTGGATATAGTATGAAATTACTAATTTGTATCAGGAAATGAATTTCCTCCATTGGGAATTCTGAGAATGAAAATAATGAGAGCCCGTCTGACTACATGTGTGATGTTTGTTGTTAATGGGTATCATATTGAATTTGTTCATAATTGTAGGGCAAGTAAACTATGTCACCATTGTAGGATATACTAGAATAAGTTCATGGAGATCTCTTTTACCATTTTGGTCCCAATCTAAGATGTTCAGGATGTAGCGTGTGTATCATGATGACATGCGTCAAGTCTGATGGGGCTTCATGTAAAGCGTGTGTTTCACTGATCATGTGTGCAAATGAACCTAAAAGAATACATTGAAAAATCTGTACACACTCCGACATAGTGCAAGGAGAAATACATTTGTCAGGAACATGAACATTGTTGTGGAGAGCAGCGTCCATATTGGCAACTAAGAATGGACTCCTTTTTATTTTCTTATATATTTGCTTTCACTGCAAGTATATGATTAAGTTTATGATGCTCGGACCCAGCACTTTTGCCTCTGTATCGGGGTCTACCCACACTGACACGGGTTATTGTGTGGAATTCCTGTCAGATCCAGTCAATAGTGATTGGATTTTTTGACCAGAATCCACGGACAAATTAGAGTATTTTTGAGATTTTGATTTCTCAAGATGACAAAGAGTAGAGATTTGAAGACGTGGAATGTCATACCTTCAATATTATCTCTGTTTCCGATTTCTTCAATATTTTTTTCTTCATATAGCAGGCCAAAATTGAAGCAAACAGAGAGTTAAACCGCTAGGAAGGAGAGAGTTTGAAGAAATCGATGACTGAGTCAACTCATTGGGGAAAACAACTGAGTTCTTCTTTTTTTTTATTTAAGGTCTGAAACGATTGAGTTTCATTCTCTTTTGGGGTTTGAAACTACTGAGTTATCTGTAGACGATATTGGATTTCACGGTGATACATCTTCGATGAAGAAAAAAGAAGCTATAGAGAAGAAGAAAGAGGAAAATTATGGGACATAGAATGCATCTCAATATGGTGGATACCAACAAGGAGGAACTCTTTTGTTTCTGGGCCTTCGTCACAATCCACTTTCAGCTACATAGAACATGGGCCATGACAGATGGCCCATTTCACAATCTTCATCTAGAATAAATATTTGCCCTCTAGAAGTAGGAACTAGACTATTTTTCACTATGTTTGCTACAAATTTAGTGATAGATCTTTTTCCAGCCATATTTTAGTGGTATAGAAGTCCTAATATTAATAACCGTGCAAGGGAAAAATGAACCAACTAAAAATGGTGATAACATTCTTTTTTTCTTTGTAGTTTTCCTTTTTTATCCTCTTACTAATTAATGAGTCTTTAATAGTAATATTAAGGAATTAATGAAATGTCAGTATATTTGATTAGGACTAAGAATTAAGTACTTCCACAAAACCTCTCTCATAATCTACACATAATTATGTAGATACACTTTTAGAATTTTGAATTTATCTTTTGCCAAATCCGCACTCACGAATCTTAAAATTTTGATTATGCCGAATCTGATCTCTAGATCAGTACCCGAATACGAAACCCCACACCTGAGTCTGAGCAACATAGGATTAAGTACAGACAATAATTGTTGGAACAAAGGAAGCTGAATAACTTCAATAAATGAAATATTGGATTCTGAAACATGTAAAGCAAGTGCAAATGATTTCAGATGTTGACTACATGCTTGTGCGGAGATCCAGCTTAAGTTTCTAATTCGGACTTGGAATTAAATTCTTATGCTAAATTTCTAATTTTATATTTTTAATCAATAAGAAGTTCATTACTTGATATAAAATCAGTAAGAAGTTCATTATATTATTCCTTTATTATTTTATAGTACCGTTGTTTTCAAGATAGTGCCTATGAGAGATAAGGTGTATGTCGTGCCTGCACAGCAATGTGTAAGTGAGGTCAAGTTTTGCTCCTAAATTTTTTATTTAACTTGATCGAGCATTTGACAACATTTTATGGTAATGATAATAGTTGGCAACCTTAACCTTTTATCTTTCCTTGGTAAGTAATATAGGTGGTCCCCTTTTCTTTTTAAATAATAAGTAACATAGGTGGATACCTTTTACTATATATGTATCACTATATGTTTGATGAAGTTATTTCTACAATACAAAAATTGGACAACCTCTTTTCTTAAAAGAAGTTAGGAATGTGAAAGATGGAAGAATTTATATGCCATTGCATTAACCTTTGTGGGTCGAATGCTGGCTAAACACCATTATTTTTCACCCACAAAAAAAAGTGATGTGGAGAAGACCCTATAAAAAAATTGACATTAGTGTGTGTCTTTTCCCTGCTCCCTTTTGTTATTTTTCGGGACTGCTGGATTAAGAATATACACCTTTGTGGACTATTAGAGTCTCTTGACATAATTATGTCCTTTCTGTTTAGCTGTAAAGAGTGATGTGATGGGACTGATTTACGTTTTGCAAGTGATATGAGCAAAATCCTTTGTTCTTTAGAAGTTGCAACTCACAAGTGAAGTGGTACTTGTTATAACCATTTGTTTTTAGCAGTAAGCATTCATATACTATAATATACTGAAGATTATTGGACTTTCTCATTTGTATGTTTTAATGTGTACAAAATAGTTAGCGTTTGGTGAATTTCTGACTTCAGTGGGTAATTATGAAGTTCTGTTGATCTCTGTGTGCAAAATAGTTGGCGCTTGGTGAATTGCTTGTTTCATTGCCTCCTTTTTGATGCGATCTATTGAACCTTCTTGAATTTTTTATTGCTAAATACAGAAAAAAGTGTGCTATTTTATTCAAAATCATATGTTTTTGACCTTTGAAGCAACGCTGGATGTAAACTACTCTGGAAGCAGCAAAAAGTTGGTCCCAATCGCCTAAAAAAGAATACTCTTTTGTTGTATTATGTTTTCTTTTTACCTTCAATTCATATTTACATTAAAATATATTTGATCTTGATAACTCCCCATTTTTTACAGTCTTTGGTTCAAGTTGAAGTAGAATATGTACCAGAGAAGGCCGAATTAGATGGTGAGTTCGATGAGGAATTCAGGAAGGTTTTTGAGAAATTCACTTTCACGGATGCTACTGGTTCTGAGGTACATAGAGCTTTGTTCACTTGCATGGATTTTCTGTGGTTATAATTTCTGCTGAAGCCAATTTGACAAAATCTTTCAATTGAAATTCTTCAGGAGAATGATAAAAAGGATGAAACTGCTGCTGATGGAGCCTCAAAGAAAAAGGCGGATTCTGATTCTGAGGAGGAAGAAGAGGATGCACAGCAAAAGGAGAAGGGAGTCTCGAACAAAAAGAAAAAAGTTAGATTTTTTAGCATCCTTTCTGTTGATACTTCTTTTTTTACTTCTAAGTTGTTATCCTTCAGTTAGGTCTCAGTCTGAACTGTTTCTTCATTTCAGCTTCAGCGTAGGATGAAAATTGCAGAACTGAAACAAATCTCTATGAAGCCTGATGTTGTTGAGGTATGGCAGGCATTTGTTTCATTGTTATTTTCCTGACATACATACTCTATGCAGTTCTGTGTACTGTTAGCGGTTACCCTGTGTATTTATCTTGTCATGAGCCAAATGAGTTATCAACTATTATCCTTTTAGAAATGTATTAACATTCTGATTTTCCATCTGTCATTTGTGTTCTTTCTTTTTTGATTATGCCCATCCCTAGCTCTGTAAATTTAGTTTGCTTGCCTTTCTAAATCTGTTTTATGGTTGTGCCAATTGCTATGATGTGAATCATTTATTATGACTTTATGAGGGTTCTGATATTATTTTTCTTTGAAGATATGGTATTATCACCCTTCAATTGGAAGGTATTTGCATCTTTAATATTGGCTAGTATGGGAGATATGTTTTCTGTGTCTTCTGTGCTGTCTTCTTTCCAGCCCACTCGTGCAGAAATTTGACGTGCCAGGTTATGCAGAAAATTTTTTCCAAGTGAAGATCAGTATGACATGGTGTTTGATAAAATTTTATATATTGACAAACCATTGTTGCTTTCTTCACTGCTTGTCATCTTCTGAACCATCTTTTTTTTTCCGCTGTACTGGAAGTAAATTTTGCATGATAGTCATGCAGGTTTTACTCAACTCTTTTGATAGCATTACAATGTTGGCTTGGTAAAATGTCTGTCTGGTTTCTGATTTATATGGGATAACTCCTAAATTGATGTTTAGACTCTGGATTTTATCACTTAAAGTGTAGCCCACTTCTCCTTGGTACTGATTATGCATATATATCTAGGTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAGGTTAGTCATCATTATTGATACATGTATTGTAGGTTAACAAAGTGAAGAATAATGTGTACCTCTTGCACTGCATGTAACAATTAGTAATAGTAGAATTGTTTGATAGGAGAAAAAGGTTTGGTTTATGAAGGGGCTCATAGAAGAAAAATGAGGTTTGTCTTATATGTATATATATGTGCTTCTTGCAGGCGAGCGGCTGTGACACTGGTGGAGCCTAAAACATGTAGGTGTTTGACAAGGAGAATCCTTGTATGATGTCTATGTTTCTGTGTATTTATGTCTTTTTATTATTTAGTGGGTTGGGATTCATGCATTTGTCATTTTTTGGTGTGCATGTTGCTGGGGTTTCACTTTCTCTTAGTTGTAAAAATGGTTGGCTGCTGTTGAGCACCTTAAAGATTGAGTGACTAATATTTTGCTCTTATCCAGTTCTATAATTTTAGTTATTTTTGCAATATTCTGTCCAAAGTTGGATTTTCTGATGTGAAGGGATCTGCCAGTCAGTCGTATAAGCCACACAGAGTATTTGTATAGAGTTTTCTTAGTGTCTTTTTCTTAATTTGCTTTTATCTAACTGACTGATTTTGTTTTTCAGGGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTGC</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGACTCCCTCCATTTTTCTTTCTCTTCACCTTCTCCTATAACTCCACCGGAAAAAAAATATCTCAACTGAATATCTACATTAATCTCAAACGGCCGGAGTAGTATGCCGGTTGAAGTAGCAAACGTAGTGACAGAAGCCATTGGTAATCCAAAAGGCGATTTGAGACCTCAAAACCCTAACGCCGCCTCTAAGAAGTCGAAGGAAAGCGACCGACGCCGTAGGCGGAGGAAGCAGAAAAAGAACAAGGCGGCGTCTAAGGTTGCAAATGGAGAAAACAGTGATAACGCTGCGCAAGACGCGAACGGCGGCGCTGAGGATAGTTCCAAGGAAAATTCCGATCCTCAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGTTCAAGTTGAAGTAGAATATGTACCAAAGAAGGCCGAATTAGATGGTGAGTTCGATGAGGAATTCAGGAAGGTTTTTGAGAAATTCACTTTCACGGATGCTACTGGTTCTGAG.............................................................................................GAGAATGATAAAAAGGATGAAACTGCTGCTGATGGAGCCTCAAAGAAAAAGGCGGATTCTGATTCTGAGGAGGAAGAAGAGGATGCACAGCAAAAGGAGAAGGGAGTCTCGAACAAAAAGAAAAAA...................................................................................................CTTCAGCGTAGGATGAAAATTGCAGAACTGAAACAAATCTCTATGAAGCCTGATGTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720109" ref_strand="+" ref_description="SGN-E720109 [FC09DD05]">
      <seq>gggcgattggcggccaatcggccgaattggactccctccatttttctttctcttcaccttctcctataactccaccggaaaaaaaatatctcaactgaatatctacattaatctcaaacggccggagtagtatgccggttgaagtagcaaacgtagtgacagaagccattggtaatccaaaaggcgatttgagacctcaaaaccctaacgccgcctctaagaagtcgaaggaaagcgaccgacgccgtaggcggaggaagcagaagaagaacaaggcggcgtctaaggttgcaaatggagaagacagtgataacgctgcgcaagacgcgaacggcggcgctgaggatagttccaaggaaaattccgatcctcagaagtctttggttcaagttgaagtagaatatgtaccagagaaggccgaattagatggtgagttcgatgaggaattcaggaaggtttttgagaaattcactttcacggatgctactggttctgaggagaatgataaaaaggatgaaactgctgctgatggagcctcaaagaaaaaggcggattctgattctgaggaggaagaagaggatgcacagcaaaaggagaagggagtctcgaacaaaaagaaaaaacttcagcgtaggatgaaaattgcagaactgaaacaaatctctatgaagcctgatgttgttgaggtatgggatgccactgcagcagaccctaagctcctggtatttctgaaatcttaccggaatactgttcctgttccaagacactggtgtcagaaacggaaatttttgcaggggaagcgtgggattgagaaacagccatttcaacttcctgactttatagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="69311" stop="75631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69617" g_stop="69961" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="377" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69962" i_stop="73298" i_length="3337">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73299" g_stop="73418" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="497" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73419" i_stop="73511" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73512" g_stop="73637" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="623" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73638" i_stop="73736" i_length="99">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73737" g_stop="73799" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="686" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73800" i_stop="74576" i_length="777">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74577" g_stop="74684" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="794" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74685" i_stop="75279" i_length="595">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75280" g_stop="75331" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="846" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E720109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69617" e_stop="69961"/>
          <exon e_start="73299" e_stop="73418"/>
          <exon e_start="73512" e_stop="73637"/>
          <exon e_start="73737" e_stop="73799"/>
          <exon e_start="74577" e_stop="74684"/>
          <exon e_start="75280" e_stop="75331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCCATTTTTCTTTCTCTTCACCTTCTCCTATAACTCCACCGGAAAAAAAATATCTCAACTGAATATCTACATTAATCTCAAACGGCCGGAGTAGTATGCCGGTTGAAGTAGCAAACGTAGTGACAGAAGCCATTGGTAATCCAAAAGGCGATTTGAGACCTCAAAACCCTAACGCCGCCTCTAAGAAGTCGAAGGAAAGCGACCGACGCCGTAGGCGGAGGAAGCAGAAGAAGAACAAGGCGGCGTCTAAGGTTGCAAATGGAGAAGACAGTGATAACGCTGCGCAAGACGCGAACGGCGGCGCTGAGGATAGTTCCAAGGAAAATTCCGATCCTCAGAAGGTACTGTCTGCTTATCCTTAATGTTAGGTATACGGTGTTCTGGATTTTTGGTGAATATGGATTGCTTAGTGTTAGTTGATGAGTTAGTTTGTTGTGGAAATAGATCTTCTGTGTATGAATGAGTTCAGGTACTTGTGTTGTAGCTTGATATTACTAAGGTTTTGTGTTGAGGAACTTCTTAGCTTCAAATGTTGAGACTCTTTTCCTTTAAAAAGATCGAGCTGAGTCAGTTGTAGTTTTCTAGTGATTGTGGTAGTTTCAAAACGGTAGTCTAAGAAGAATTTCTTGTTATGTTTTGTGATTTGGGAAACAAGATAAGAGGAGGAGGAGGCAACATTGGATATAGTATGAAATTACTAATTTGTATCAGGAAATGAATTTCCTCCATTGGGAATTCTGAGAATGAAAATAATGAGAGCCCGTCTGACTACATGTGTGATGTTTGTTGTTAATGGGTATCATATTGAATTTGTTCATAATTGTAGGGCAAGTAAACTATGTCACCATTGTAGGATATACTAGAATAAGTTCATGGAGATCTCTTTTACCATTTTGGTCCCAATCTAAGATGTTCAGGATGTAGCGTGTGTATCATGATGACATGCGTCAAGTCTGATGGGGCTTCATGTAAAGCGTGTGTTTCACTGATCATGTGTGCAAATGAACCTAAAAGAATACATTGAAAAATCTGTACACACTCCGACATAGTGCAAGGAGAAATACATTTGTCAGGAACATGAACATTGTTGTGGAGAGCAGCGTCCATATTGGCAACTAAGAATGGACTCCTTTTTATTTTCTTATATATTTGCTTTCACTGCAAGTATATGATTAAGTTTATGATGCTCGGACCCAGCACTTTTGCCTCTGTATCGGGGTCTACCCACACTGACACGGGTTATTGTGTGGAATTCCTGTCAGATCCAGTCAATAGTGATTGGATTTTTTGACCAGAATCCACGGACAAATTAGAGTATTTTTGAGATTTTGATTTCTCAAGATGACAAAGAGTAGAGATTTGAAGACGTGGAATGTCATACCTTCAATATTATCTCTGTTTCCGATTTCTTCAATATTTTTTTCTTCATATAGCAGGCCAAAATTGAAGCAAACAGAGAGTTAAACCGCTAGGAAGGAGAGAGTTTGAAGAAATCGATGACTGAGTCAACTCATTGGGGAAAACAACTGAGTTCTTCTTTTTTTTTATTTAAGGTCTGAAACGATTGAGTTTCATTCTCTTTTGGGGTTTGAAACTACTGAGTTATCTGTAGACGATATTGGATTTCACGGTGATACATCTTCGATGAAGAAAAAAGAAGCTATAGAGAAGAAGAAAGAGGAAAATTATGGGACATAGAATGCATCTCAATATGGTGGATACCAACAAGGAGGAACTCTTTTGTTTCTGGGCCTTCGTCACAATCCACTTTCAGCTACATAGAACATGGGCCATGACAGATGGCCCATTTCACAATCTTCATCTAGAATAAATATTTGCCCTCTAGAAGTAGGAACTAGACTATTTTTCACTATGTTTGCTACAAATTTAGTGATAGATCTTTTTCCAGCCATATTTTAGTGGTATAGAAGTCCTAATATTAATAACCGTGCAAGGGAAAAATGAACCAACTAAAAATGGTGATAACATTCTTTTTTTCTTTGTAGTTTTCCTTTTTTATCCTCTTACTAATTAATGAGTCTTTAATAGTAATATTAAGGAATTAATGAAATGTCAGTATATTTGATTAGGACTAAGAATTAAGTACTTCCACAAAACCTCTCTCATAATCTACACATAATTATGTAGATACACTTTTAGAATTTTGAATTTATCTTTTGCCAAATCCGCACTCACGAATCTTAAAATTTTGATTATGCCGAATCTGATCTCTAGATCAGTACCCGAATACGAAACCCCACACCTGAGTCTGAGCAACATAGGATTAAGTACAGACAATAATTGTTGGAACAAAGGAAGCTGAATAACTTCAATAAATGAAATATTGGATTCTGAAACATGTAAAGCAAGTGCAAATGATTTCAGATGTTGACTACATGCTTGTGCGGAGATCCAGCTTAAGTTTCTAATTCGGACTTGGAATTAAATTCTTATGCTAAATTTCTAATTTTATATTTTTAATCAATAAGAAGTTCATTACTTGATATAAAATCAGTAAGAAGTTCATTATATTATTCCTTTATTATTTTATAGTACCGTTGTTTTCAAGATAGTGCCTATGAGAGATAAGGTGTATGTCGTGCCTGCACAGCAATGTGTAAGTGAGGTCAAGTTTTGCTCCTAAATTTTTTATTTAACTTGATCGAGCATTTGACAACATTTTATGGTAATGATAATAGTTGGCAACCTTAACCTTTTATCTTTCCTTGGTAAGTAATATAGGTGGTCCCCTTTTCTTTTTAAATAATAAGTAACATAGGTGGATACCTTTTACTATATATGTATCACTATATGTTTGATGAAGTTATTTCTACAATACAAAAATTGGACAACCTCTTTTCTTAAAAGAAGTTAGGAATGTGAAAGATGGAAGAATTTATATGCCATTGCATTAACCTTTGTGGGTCGAATGCTGGCTAAACACCATTATTTTTCACCCACAAAAAAAAGTGATGTGGAGAAGACCCTATAAAAAAATTGACATTAGTGTGTGTCTTTTCCCTGCTCCCTTTTGTTATTTTTCGGGACTGCTGGATTAAGAATATACACCTTTGTGGACTATTAGAGTCTCTTGACATAATTATGTCCTTTCTGTTTAGCTGTAAAGAGTGATGTGATGGGACTGATTTACGTTTTGCAAGTGATATGAGCAAAATCCTTTGTTCTTTAGAAGTTGCAACTCACAAGTGAAGTGGTACTTGTTATAACCATTTGTTTTTAGCAGTAAGCATTCATATACTATAATATACTGAAGATTATTGGACTTTCTCATTTGTATGTTTTAATGTGTACAAAATAGTTAGCGTTTGGTGAATTTCTGACTTCAGTGGGTAATTATGAAGTTCTGTTGATCTCTGTGTGCAAAATAGTTGGCGCTTGGTGAATTGCTTGTTTCATTGCCTCCTTTTTGATGCGATCTATTGAACCTTCTTGAATTTTTTATTGCTAAATACAGAAAAAAGTGTGCTATTTTATTCAAAATCATATGTTTTTGACCTTTGAAGCAACGCTGGATGTAAACTACTCTGGAAGCAGCAAAAAGTTGGTCCCAATCGCCTAAAAAAGAATACTCTTTTGTTGTATTATGTTTTCTTTTTACCTTCAATTCATATTTACATTAAAATATATTTGATCTTGATAACTCCCCATTTTTTACAGTCTTTGGTTCAAGTTGAAGTAGAATATGTACCAGAGAAGGCCGAATTAGATGGTGAGTTCGATGAGGAATTCAGGAAGGTTTTTGAGAAATTCACTTTCACGGATGCTACTGGTTCTGAGGTACATAGAGCTTTGTTCACTTGCATGGATTTTCTGTGGTTATAATTTCTGCTGAAGCCAATTTGACAAAATCTTTCAATTGAAATTCTTCAGGAGAATGATAAAAAGGATGAAACTGCTGCTGATGGAGCCTCAAAGAAAAAGGCGGATTCTGATTCTGAGGAGGAAGAAGAGGATGCACAGCAAAAGGAGAAGGGAGTCTCGAACAAAAAGAAAAAAGTTAGATTTTTTAGCATCCTTTCTGTTGATACTTCTTTTTTTACTTCTAAGTTGTTATCCTTCAGTTAGGTCTCAGTCTGAACTGTTTCTTCATTTCAGCTTCAGCGTAGGATGAAAATTGCAGAACTGAAACAAATCTCTATGAAGCCTGATGTTGTTGAGGTATGGCAGGCATTTGTTTCATTGTTATTTTCCTGACATACATACTCTATGCAGTTCTGTGTACTGTTAGCGGTTACCCTGTGTATTTATCTTGTCATGAGCCAAATGAGTTATCAACTATTATCCTTTTAGAAATGTATTAACATTCTGATTTTCCATCTGTCATTTGTGTTCTTTCTTTTTTGATTATGCCCATCCCTAGCTCTGTAAATTTAGTTTGCTTGCCTTTCTAAATCTGTTTTATGGTTGTGCCAATTGCTATGATGTGAATCATTTATTATGACTTTATGAGGGTTCTGATATTATTTTTCTTTGAAGATATGGTATTATCACCCTTCAATTGGAAGGTATTTGCATCTTTAATATTGGCTAGTATGGGAGATATGTTTTCTGTGTCTTCTGTGCTGTCTTCTTTCCAGCCCACTCGTGCAGAAATTTGACGTGCCAGGTTATGCAGAAAATTTTTTCCAAGTGAAGATCAGTATGACATGGTGTTTGATAAAATTTTATATATTGACAAACCATTGTTGCTTTCTTCACTGCTTGTCATCTTCTGAACCATCTTTTTTTTTCCGCTGTACTGGAAGTAAATTTTGCATGATAGTCATGCAGGTTTTACTCAACTCTTTTGATAGCATTACAATGTTGGCTTGGTAAAATGTCTGTCTGGTTTCTGATTTATATGGGATAACTCCTAAATTGATGTTTAGACTCTGGATTTTATCACTTAAAGTGTAGCCCACTTCTCCTTGGTACTGATTATGCATATATATCTAGGTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAGGTTAGTCATCATTATTGATACATGTATTGTAGGTTAACAAAGTGAAGAATAATGTGTACCTCTTGCACTGCATGTAACAATTAGTAATAGTAGAATTGTTTGATAGGAGAAAAAGGTTTGGTTTATGAAGGGGCTCATAGAAGAAAAATGAGGTTTGTCTTATATGTATATATATGTGCTTCTTGCAGGCGAGCGGCTGTGACACTGGTGGAGCCTAAAACATGTAGGTGTTTGACAAGGAGAATCCTTGTATGATGTCTATGTTTCTGTGTATTTATGTCTTTTTATTATTTAGTGGGTTGGGATTCATGCATTTGTCATTTTTTGGTGTGCATGTTGCTGGGGTTTCACTTTCTCTTAGTTGTAAAAATGGTTGGCTGCTGTTGAGCACCTTAAAGATTGAGTGACTAATATTTTGCTCTTATCCAGTTCTATAATTTTAGTTATTTTTGCAATATTCTGTCCAAAGTTGGATTTTCTGATGTGAAGGGATCTGCCAGTCAGTCGTATAAGCCACACAGAGTATTTGTATAGAGTTTTCTTAGTGTCTTTTTCTTAATTTGCTTTTATCTAACTGACTGATTTTGTTTTTCAGGGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTG</genome_strand>
        <mrna_strand>TCCCTCCATTTTTCTTTCTCTTCACCTTCTCCTATAACTCCACCGGAAAAAAAATATCTCAACTGAATATCTACATTAATCTCAAACGGCCGGAGTAGTATGCCGGTTGAAGTAGCAAACGTAGTGACAGAAGCCATTGGTAATCCAAAAGGCGATTTGAGACCTCAAAACCCTAACGCCGCCTCTAAGAAGTCGAAGGAAAGCGACCGACGCCGTAGGCGGAGGAAGCAGAAGAAGAACAAGGCGGCGTCTAAGGTTGCAAATGGAGAAGACAGTGATAACGCTGCGCAAGACGCGAACGGCGGCGCTGAGGATAGTTCCAAGGAAAATTCCGATCCTCAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGTTCAAGTTGAAGTAGAATATGTACCAGAGAAGGCCGAATTAGATGGTGAGTTCGATGAGGAATTCAGGAAGGTTTTTGAGAAATTCACTTTCACGGATGCTACTGGTTCTGAG.............................................................................................GAGAATGATAAAAAGGATGAAACTGCTGCTGATGGAGCCTCAAAGAAAAAGGCGGATTCTGATTCTGAGGAGGAAGAAGAGGATGCACAGCAAAAGGAGAAGGGAGTCTCGAACAAAAAGAAAAAA...................................................................................................CTTCAGCGTAGGATGAAAATTGCAGAACTGAAACAAATCTCTATGAAGCCTGATGTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724014" ref_strand="+" ref_description="SGN-E724014 [FC22DC01]">
      <seq>atttttctttctcttcaccttctcctatacctccaccggaaaaaaaatatctcaactgaatatctacattaatctcaaaaggccggagtaatatgccggttgaagtaccaaacgtagtgacagaagccattggtaatccaaaaggcgatttgagacctctaaaccctaacgccgcctctaagaagtcgaaggaaagcgaccgacgccgtaggcggaggaagcagaaaaaaaacaaggcggcgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="69324" stop="70169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69624" g_stop="69869" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E724014" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69624" e_stop="69869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTTTCTCTTCACCTTCTCCTATAACTCCACCGGAAAAAAAATATCTCAACTGAATATCTACATTAATCTCAAACGGCCGGAGTAGTATGCCGGTTGAAGTAGCAAACGTAGTGACAGAAGCCATTGGTAATCCAAAAGGCGATTTGAGACCTCAAAACCCTAACGCCGCCTCTAAGAAGTCGAAGGAAAGCGACCGACGCCGTAGGCGGAGGAAGCAGAAGAAGAACAAGGCGGCGTCTA</genome_strand>
        <mrna_strand>ATTTTTCTTTCTCTTCACCTTCTCCTATACCTCCACCGGAAAAAAAATATCTCAACTGAATATCTACATTAATCTCAAAAGGCCGGAGTAATATGCCGGTTGAAGTACCAAACGTAGTGACAGAAGCCATTGGTAATCCAAAAGGCGATTTGAGACCTCTAAACCCTAACGCCGCCTCTAAGAAGTCGAAGGAAAGCGACCGACGCCGTAGGCGGAGGAAGCAGAAAAAAAACAAGGCGGCGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269180" ref_strand="+" ref_description="SGN-E269180 [cLEI-16-D11]">
      <seq>ggagtctcgaacaaaaagaaaaaacttcagcgtatgatgaaaattgcagaactgaaacaaatctctatgaagcctgatgttgttgaggtatgggatgccactgcagcagaccctaagctcctggtatttctgaaatcttaccggaatactgttcctgttccaagacactggtgtcagaaacggaaatttttgcaagggaagcgtgggattgagaaacagccatttcaacttcctgactttatagctgcgacaggaattgataaaattagacaagcttatattgaaaaggaggacagtaagaagcttaaacaaaagcaccgggaaaggatgcagccaaaaatggggaagatggatatcgattatcaggttctacatgacgccttttttaagtatcaaactaaaccaaagttgacatcccttggtgatctgtattatgaaggaaaagagtttgaggtctagttgagggaaatgaaacctggaactttgtcttcatgaactgaaagaggcccttggtatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="73314" stop="77247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73614" g_stop="73637" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73638" i_stop="73736" i_length="99">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73737" g_stop="73799" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="87" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73800" i_stop="74576" i_length="777">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74577" g_stop="74684" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="195" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74685" i_stop="75279" i_length="595">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75280" g_stop="75357" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="273" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75358" i_stop="76045" i_length="688">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76046" g_stop="76138" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="366" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76139" i_stop="76249" i_length="111">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76250" g_stop="76336" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="453" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76337" i_stop="76881" i_length="545">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76882" g_stop="76947" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="520" r_length="67" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E269180" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73614" e_stop="73637"/>
          <exon e_start="73737" e_stop="73799"/>
          <exon e_start="74577" e_stop="74684"/>
          <exon e_start="75280" e_stop="75357"/>
          <exon e_start="76046" e_stop="76138"/>
          <exon e_start="76250" e_stop="76336"/>
          <exon e_start="76882" e_stop="76947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTCTCGAACAAAAAGAAAAAAGTTAGATTTTTTAGCATCCTTTCTGTTGATACTTCTTTTTTTACTTCTAAGTTGTTATCCTTCAGTTAGGTCTCAGTCTGAACTGTTTCTTCATTTCAGCTTCAGCGTAGGATGAAAATTGCAGAACTGAAACAAATCTCTATGAAGCCTGATGTTGTTGAGGTATGGCAGGCATTTGTTTCATTGTTATTTTCCTGACATACATACTCTATGCAGTTCTGTGTACTGTTAGCGGTTACCCTGTGTATTTATCTTGTCATGAGCCAAATGAGTTATCAACTATTATCCTTTTAGAAATGTATTAACATTCTGATTTTCCATCTGTCATTTGTGTTCTTTCTTTTTTGATTATGCCCATCCCTAGCTCTGTAAATTTAGTTTGCTTGCCTTTCTAAATCTGTTTTATGGTTGTGCCAATTGCTATGATGTGAATCATTTATTATGACTTTATGAGGGTTCTGATATTATTTTTCTTTGAAGATATGGTATTATCACCCTTCAATTGGAAGGTATTTGCATCTTTAATATTGGCTAGTATGGGAGATATGTTTTCTGTGTCTTCTGTGCTGTCTTCTTTCCAGCCCACTCGTGCAGAAATTTGACGTGCCAGGTTATGCAGAAAATTTTTTCCAAGTGAAGATCAGTATGACATGGTGTTTGATAAAATTTTATATATTGACAAACCATTGTTGCTTTCTTCACTGCTTGTCATCTTCTGAACCATCTTTTTTTTTCCGCTGTACTGGAAGTAAATTTTGCATGATAGTCATGCAGGTTTTACTCAACTCTTTTGATAGCATTACAATGTTGGCTTGGTAAAATGTCTGTCTGGTTTCTGATTTATATGGGATAACTCCTAAATTGATGTTTAGACTCTGGATTTTATCACTTAAAGTGTAGCCCACTTCTCCTTGGTACTGATTATGCATATATATCTAGGTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAGGTTAGTCATCATTATTGATACATGTATTGTAGGTTAACAAAGTGAAGAATAATGTGTACCTCTTGCACTGCATGTAACAATTAGTAATAGTAGAATTGTTTGATAGGAGAAAAAGGTTTGGTTTATGAAGGGGCTCATAGAAGAAAAATGAGGTTTGTCTTATATGTATATATATGTGCTTCTTGCAGGCGAGCGGCTGTGACACTGGTGGAGCCTAAAACATGTAGGTGTTTGACAAGGAGAATCCTTGTATGATGTCTATGTTTCTGTGTATTTATGTCTTTTTATTATTTAGTGGGTTGGGATTCATGCATTTGTCATTTTTTGGTGTGCATGTTGCTGGGGTTTCACTTTCTCTTAGTTGTAAAAATGGTTGGCTGCTGTTGAGCACCTTAAAGATTGAGTGACTAATATTTTGCTCTTATCCAGTTCTATAATTTTAGTTATTTTTGCAATATTCTGTCCAAAGTTGGATTTTCTGATGTGAAGGGATCTGCCAGTCAGTCGTATAAGCCACACAGAGTATTTGTATAGAGTTTTCTTAGTGTCTTTTTCTTAATTTGCTTTTATCTAACTGACTGATTTTGTTTTTCAGGGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTGCGACAGGAATTGAGAAAATTAGACAAGTATGATTTTCTGTCCAATTTTATCTTTCTTTGGTTGACGGCTTTGTTAAGTAGGAATGTGTTGCATGAATTATTGTAGATACACTACTAATAAATGAAGGTTTTTCATTCTGACTATGGAAAGATGAAAATATGTTGGTGGTACTCTATCAAAGTTGTATCAACGTAATGATCATTATTAAAATCAAGCTTAGATTTCAAGGTGAACTACTTGATGCTTTCACATTCTACGTTATCTTGAGATGAGCCTGATAATCCTATTCTTTTAATAGAAACACCCTACGGCATTTTATTTTATTTCATGAAAAGATAAATTAATGTGTAACAAGAAGGTACAAGAAGATTACAACTGAAGGTCTTAGTCCACCTACATCTTGAAATACTATAAAAGATCCATCAGTGAGGCAATATCAATATTTAGTTATAATATTCTAACATCTAAGAGGCTATCAAATCATGATTTCACTGGACTTACATAGGAAATGCACTCTTTCTGTCTGTTGACCCTTTGGTATTCTTCTAATTGTAGAAAAGACAGATCCTAAAACTATTTACCTGGTATAAGATGATGATTTTACAAATCTGTTGTGTTAAAACTTGTTGAAATGTGATACCTTTTTGTGAGCTTATGTAGTATGTCTAGTTTCCTTGCTGATGTTTGGACATCTTATTTGTTCTTCTGGTGCAGGCTTATATTGAAAAGGAGGACAGTAAGAAGCTTAAACAAAAGCAGCGGGAAAGGATGCAGCCAAAAATGGGGAAGATGGATATCGATTATCAGGTTTAATACGAGCTTTTTTCTCAATGATGCAGACCTTTCAAATACATATAGACTATAGTTAACTGCTTATGTACTTTTCTAAGGCTTACTGCTCTGGTTTATTCTTCACAGGTTCTACATGACGCCTTTTTTAAGTATCAAACTAAACCAAAGTTGACATCCCTTGGTGATCTGTATTATGAAGGAAAAGAGTTTGAGGTAAAAAATAGCCATAAATATTGTTCATCAAACTCATGTTCTTTAAATCTTTTTAATGATGGTGGTGTCCGTGTGAGCATTGTGCGCCCTTAGAGTACTACACCAGGTATCTGCTACTTCGCAGAACATCTGCCCCAAGACTTAGATAGAGTGGAAGGAAACACTTAGTATATGTTTGCTTCCGCTGGGATTTGAGCCTGAGACTCCATATTGTGCTCCAACTTCATTGACCACTAGGCCACAACCTTGGGTGCCAAACACATGCTCTTTCTTCTCTAGCTTTCATGCTTTTTTTTTTTTGAAAAAAAAATTGTTCTCAACCTTGCTGATATTTCACCGAGCCTGGGGAAAAATAATGGAAGTCTTTTTGCTGTTGTGATCTTATAAGACCAAACTGGGTAGGTTTGGATAGGACTATCCAACTTGGAGATGTGTTCCCGTTGTGTTAATTCTTGGTTGTTGTTAGGCTTTACAACTGTTAATACTTTCGATATCCTATCCTCTGCATTTTTGTCTGTTAACCATCATTTTATTTTAATGTGAAGGTCAAGTTGAGGGAAATGAAACCTGGAACTTTGTC-TCATGAACTGAAAGAGGCCCTTGGTATGCCT</genome_strand>
        <mrna_strand>GGAGTCTCGAACAAAAAGAAAAAA...................................................................................................CTTCAGCGTATGATGAAAATTGCAGAACTGAAACAAATCTCTATGAAGCCTGATGTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTGCGACAGGAATTGATAAAATTAGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATATTGAAAAGGAGGACAGTAAGAAGCTTAAACAAAAGCACCGGGAAAGGATGCAGCCAAAAATGGGGAAGATGGATATCGATTATCAG...............................................................................................................GTTCTACATGACGCCTTTTTTAAGTATCAAACTAAACCAAAGTTGACATCCCTTGGTGATCTGTATTATGAAGGAAAAGAGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGTTGAGGGAAATGAAACCTGGAACTTTGTCTTCATGAACTGAAAGAGGCCCTTGGTATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211358" ref_strand="+" ref_description="SGN-E211358 [cLEC-70-N20]">
      <seq>gatgttgttgaggtatgggatgccactgcagcagaccctaagctcctggtatttctgaaatcttaccggaatactgttcctgttccaagacactggtgtcagaaacggaaatttttgcaggggaagcgtgggattgagaaacagccatttcaacttcctgactttatagctgcgacaggaattgagaaaattagacaagcttatattgaaaaggaggacagtaagaagcttaaacaaaagcagcgggaaaggatgcagccaaaaatggggaagatggatatcgattatcaggttctacatgacgccttttttaagtatcaaactaaaccaaagttgacatcccttggtgatctgtattatgaaggaaaagagtttgaggtcaagttgagggaaatgaaacctggaactttgtctcatgaactgaaagaggcccttggtatgcctgaaggtgctcctcctccatggctcatcaatatgcagagatatggtcctccaccctcttatcctcagctgaagattcctggactgaatgctcctattccacatggagccaagttcggttatcagccgggaggttggggtaaaccacctgttgatgaatatgggcgccctttatacggagatgtctttggtgtattgcacaagatcagcctaattatgaggatgaacctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="74265" stop="77711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74577" g_stop="74684" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="120" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74685" i_stop="75279" i_length="595">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75280" g_stop="75357" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="198" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75358" i_stop="76045" i_length="688">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76046" g_stop="76138" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="291" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76139" i_stop="76249" i_length="111">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76250" g_stop="76336" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="378" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76337" i_stop="76881" i_length="545">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76882" g_stop="76983" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="480" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76984" i_stop="77107" i_length="124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77108" g_stop="77227" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="600" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77228" i_stop="77339" i_length="112">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77340" g_stop="77402" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="662" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E211358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74577" e_stop="74684"/>
          <exon e_start="75280" e_stop="75357"/>
          <exon e_start="76046" e_stop="76138"/>
          <exon e_start="76250" e_stop="76336"/>
          <exon e_start="76882" e_stop="76983"/>
          <exon e_start="77108" e_stop="77227"/>
          <exon e_start="77340" e_stop="77402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAGGTTAGTCATCATTATTGATACATGTATTGTAGGTTAACAAAGTGAAGAATAATGTGTACCTCTTGCACTGCATGTAACAATTAGTAATAGTAGAATTGTTTGATAGGAGAAAAAGGTTTGGTTTATGAAGGGGCTCATAGAAGAAAAATGAGGTTTGTCTTATATGTATATATATGTGCTTCTTGCAGGCGAGCGGCTGTGACACTGGTGGAGCCTAAAACATGTAGGTGTTTGACAAGGAGAATCCTTGTATGATGTCTATGTTTCTGTGTATTTATGTCTTTTTATTATTTAGTGGGTTGGGATTCATGCATTTGTCATTTTTTGGTGTGCATGTTGCTGGGGTTTCACTTTCTCTTAGTTGTAAAAATGGTTGGCTGCTGTTGAGCACCTTAAAGATTGAGTGACTAATATTTTGCTCTTATCCAGTTCTATAATTTTAGTTATTTTTGCAATATTCTGTCCAAAGTTGGATTTTCTGATGTGAAGGGATCTGCCAGTCAGTCGTATAAGCCACACAGAGTATTTGTATAGAGTTTTCTTAGTGTCTTTTTCTTAATTTGCTTTTATCTAACTGACTGATTTTGTTTTTCAGGGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTGCGACAGGAATTGAGAAAATTAGACAAGTATGATTTTCTGTCCAATTTTATCTTTCTTTGGTTGACGGCTTTGTTAAGTAGGAATGTGTTGCATGAATTATTGTAGATACACTACTAATAAATGAAGGTTTTTCATTCTGACTATGGAAAGATGAAAATATGTTGGTGGTACTCTATCAAAGTTGTATCAACGTAATGATCATTATTAAAATCAAGCTTAGATTTCAAGGTGAACTACTTGATGCTTTCACATTCTACGTTATCTTGAGATGAGCCTGATAATCCTATTCTTTTAATAGAAACACCCTACGGCATTTTATTTTATTTCATGAAAAGATAAATTAATGTGTAACAAGAAGGTACAAGAAGATTACAACTGAAGGTCTTAGTCCACCTACATCTTGAAATACTATAAAAGATCCATCAGTGAGGCAATATCAATATTTAGTTATAATATTCTAACATCTAAGAGGCTATCAAATCATGATTTCACTGGACTTACATAGGAAATGCACTCTTTCTGTCTGTTGACCCTTTGGTATTCTTCTAATTGTAGAAAAGACAGATCCTAAAACTATTTACCTGGTATAAGATGATGATTTTACAAATCTGTTGTGTTAAAACTTGTTGAAATGTGATACCTTTTTGTGAGCTTATGTAGTATGTCTAGTTTCCTTGCTGATGTTTGGACATCTTATTTGTTCTTCTGGTGCAGGCTTATATTGAAAAGGAGGACAGTAAGAAGCTTAAACAAAAGCAGCGGGAAAGGATGCAGCCAAAAATGGGGAAGATGGATATCGATTATCAGGTTTAATACGAGCTTTTTTCTCAATGATGCAGACCTTTCAAATACATATAGACTATAGTTAACTGCTTATGTACTTTTCTAAGGCTTACTGCTCTGGTTTATTCTTCACAGGTTCTACATGACGCCTTTTTTAAGTATCAAACTAAACCAAAGTTGACATCCCTTGGTGATCTGTATTATGAAGGAAAAGAGTTTGAGGTAAAAAATAGCCATAAATATTGTTCATCAAACTCATGTTCTTTAAATCTTTTTAATGATGGTGGTGTCCGTGTGAGCATTGTGCGCCCTTAGAGTACTACACCAGGTATCTGCTACTTCGCAGAACATCTGCCCCAAGACTTAGATAGAGTGGAAGGAAACACTTAGTATATGTTTGCTTCCGCTGGGATTTGAGCCTGAGACTCCATATTGTGCTCCAACTTCATTGACCACTAGGCCACAACCTTGGGTGCCAAACACATGCTCTTTCTTCTCTAGCTTTCATGCTTTTTTTTTTTTGAAAAAAAAATTGTTCTCAACCTTGCTGATATTTCACCGAGCCTGGGGAAAAATAATGGAAGTCTTTTTGCTGTTGTGATCTTATAAGACCAAACTGGGTAGGTTTGGATAGGACTATCCAACTTGGAGATGTGTTCCCGTTGTGTTAATTCTTGGTTGTTGTTAGGCTTTACAACTGTTAATACTTTCGATATCCTATCCTCTGCATTTTTGTCTGTTAACCATCATTTTATTTTAATGTGAAGGTCAAGTTGAGGGAAATGAAACCTGGAACTTTGTCTCATGAACTGAAAGAGGCCCTTGGTATGCCTGAAGGTGCTCCTCCTCCATGGCTCATCAATATGCAGGTATGATAACTTAAAACTACTTGTTCTTTTACTGGATGTATCGTTTGTTACCCCAGGTTCTCGTTTGATTACTATGTTGAGTTCGTTCCTAATGTGATTTTCCATACCTCCATTTTCTGTGCAGAGATATGGTCCTCCACCCTCTTATCCTCAGCTGAAGATTCCTGGACTGAATGCTCCTATTCCACATGGAGCCAAGTTCGGTTATCAGCCGGGAGGTTGGGGTAAACCACCTGTTGATGAAGTAGGTTTTACAACCTTTCAGTATATTTGTTTTATATTCTTCCTTTCAGATTGGTCAGCTTTAAGAGTTTCTTATTTTAATTTTAACCTTTGCCCTTCTTTCTTTGACATAGTATGGGCGCCCTTTATACGGAGATGTCTTTGGTGTATTGCAACAAGATCAGCCTAATTATGAG</genome_strand>
        <mrna_strand>GTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTGCGACAGGAATTGAGAAAATTAGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATATTGAAAAGGAGGACAGTAAGAAGCTTAAACAAAAGCAGCGGGAAAGGATGCAGCCAAAAATGGGGAAGATGGATATCGATTATCAG...............................................................................................................GTTCTACATGACGCCTTTTTTAAGTATCAAACTAAACCAAAGTTGACATCCCTTGGTGATCTGTATTATGAAGGAAAAGAGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTGAGGGAAATGAAACCTGGAACTTTGTCTCATGAACTGAAAGAGGCCCTTGGTATGCCTGAAGGTGCTCCTCCTCCATGGCTCATCAATATGCAG............................................................................................................................AGATATGGTCCTCCACCCTCTTATCCTCAGCTGAAGATTCCTGGACTGAATGCTCCTATTCCACATGGAGCCAAGTTCGGTTATCAGCCGGGAGGTTGGGGTAAACCACCTGTTGATGAA................................................................................................................TATGGGCGCCCTTTATACGGAGATGTCTTTGGTGTATTGC-ACAAGATCAGCCTAATTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554502" ref_strand="+" ref_description="SGN-E554502 [cTSC-4-I11]">
      <seq>ctttgtctcatgaactgaaagaggcccttggtatgcctgaaggtgctcctcctccatggctcatcaatatgcagagatatggtcctccaccctcttatcctcagctgaagattcctggactgaatgctcctattccacatggagccaagttcggttatcagccgggaggttggggtaaaccacctgttgatgaatatgggcgccctttatacggagatgtctttggtgtattgcaacaagatcagcctaattatgaggatgaacctgttgataagactaaacattggggtgacttggaggaagaggaagaagaggaggaagaggaggaagaagaagagttggaggaagaggagatggaggacggtattcagtcagtggacagtctttcaagtactcctactggagttgagactcctgatgttattgaccttcgcaagcagcagaggaaggagcccgagaagcccctctatcaggtgcttgaagaaaaagaagaaaaggtagctcctggtactcttcttggaacaagccatacgtatgtgatcaacactggcgctcaagacaaggctggtgccaaaagggttgatctgctcaaaggtcagaagtcggatagagttgatgtcacattggcacctgaagagttggaacttatggacaatgttttaccagccaaatacgaggaagctagagaggaagagaagctccgtagccagcgtgaggatttcagtgacatggtagcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="76610" stop="79677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76910" g_stop="76983" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76984" i_stop="77107" i_length="124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77108" g_stop="77227" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="194" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77228" i_stop="77339" i_length="112">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77340" g_stop="77402" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="257" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77403" i_stop="78074" i_length="672">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78075" g_stop="78208" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="391" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78209" i_stop="78364" i_length="156">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78365" g_stop="78446" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="473" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78447" i_stop="78534" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78535" g_stop="78593" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="532" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78594" i_stop="78697" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78698" g_stop="78743" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="578" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78744" i_stop="79128" i_length="385">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="79129" g_stop="79220" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="670" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="79309" g_stop="79377" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="739" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E554502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76910" e_stop="76983"/>
          <exon e_start="77108" e_stop="77227"/>
          <exon e_start="77340" e_stop="77402"/>
          <exon e_start="78075" e_stop="78208"/>
          <exon e_start="78365" e_stop="78446"/>
          <exon e_start="78535" e_stop="78593"/>
          <exon e_start="78698" e_stop="78743"/>
          <exon e_start="79129" e_stop="79220"/>
          <exon e_start="79309" e_stop="79377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCTCATGAACTGAAAGAGGCCCTTGGTATGCCTGAAGGTGCTCCTCCTCCATGGCTCATCAATATGCAGGTATGATAACTTAAAACTACTTGTTCTTTTACTGGATGTATCGTTTGTTACCCCAGGTTCTCGTTTGATTACTATGTTGAGTTCGTTCCTAATGTGATTTTCCATACCTCCATTTTCTGTGCAGAGATATGGTCCTCCACCCTCTTATCCTCAGCTGAAGATTCCTGGACTGAATGCTCCTATTCCACATGGAGCCAAGTTCGGTTATCAGCCGGGAGGTTGGGGTAAACCACCTGTTGATGAAGTAGGTTTTACAACCTTTCAGTATATTTGTTTTATATTCTTCCTTTCAGATTGGTCAGCTTTAAGAGTTTCTTATTTTAATTTTAACCTTTGCCCTTCTTTCTTTGACATAGTATGGGCGCCCTTTATACGGAGATGTCTTTGGTGTATTGCAACAAGATCAGCCTAATTATGAGGTACATTGTGCTCTTTTTTGTTTGGTATGTTCTTGGAGTGTAAGTTTAATGAGTTAGGATTTTATGTTAGGTAGTTGTCATATTATCTAAGGGATAATGCACAAGTACCTCCTTAACCTATGCCCGAAATCCCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATAAATAATTTTCTACCCCTTTTTAGCCTACGTGGCACTGGTTTGAAAAAAAAGTCAACCAGCGTTGGGCCCACAAGATAGTGCCACGTAGGCCGAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGAGCATAGGTTGAGGGGGTACTTGGACATCATCCCTATTATCTAATGATAAGGTAAAATAATGGGAACTGCACCATATTCAATATGGTAAATAGAGAATACTTAAATTGACTACTTGATTTTGGTAAACATGCAATGGTATAGACCTACTGATGATGTTTCTATATTGTTAGTAAATTCTCTATCTTAAAAAAATATTGTTAATACATTCATAAATGTGGCCTTGTAGTTGGTGCACAAAAGCTTGGGCCTCGCCTTTTTGCTCGGTGTATTACGTAAATTAATATCATGCTGCTCATCTATATGTGTAGGATGAACCTGTTGATAAGACTAAACATTGGGGTGACTTGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGTTGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCAAGGTACTGACTTGATCAATTCCTTTAATGATCAAATATCTATCAGAAATCTTGTAGTAGCTTGAAGTCTTCCTCATTTTTGGTTCCCTTTCACTAATTTATTCGTTCTTGCTGAGATCCATTTTAGCTTTGTTCTCAATGTATCTCTCTATGGTGTAGTACTCCTACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTATCAGGTAATTAGGCCAACTTTTTGTCTCCCAGTTTCTATATTCTCTCTGCTTTCTTTTCCGTCCTTGTAAATTACATCTCTTTTCTGTATAGGTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATACGTAAGTAATCTATCTATTTATCTATACTCACATATATGTAGCTTTGGACACTAGCATTTATCCTTTCCTCTACTGTGCAATTGATTTATGCTCTCATTCTGCAGGTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCAAAAGGGTAAGGCTATCTTTTTCTTTGTCATGTGTTCAAATGCAGGTTTACTTTCTCAAGCAGAAATCTTCATAGAGTGACATGGTCTCAGTAGCGTCAGCCCCTATTGGTGGGGCTATAGCTGCTGTGGACAAGTCACATATGTTGAATTTTTCAGCTTATTCTTGTTAGTTGGTCACTGATGGAAAAGACAGTTCAAGATAAAGAGGCAAAGTACTTCAATTTCATTTGTCACTTTCTGACATATCTTGTTACATTTTGACTAATTATTTGATACTTCACTTTTATTTGCGTCACTTTCTTATATTAATGCTTACAGTTGGTTTTTCTTCTAGAAGAGGCACTAGATTAGAATTTGCGGCTAATTAATTGCTTGGAATGTCCACTTTAGGTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAAGTAATTAATGATTCTTTTAACATTTTATGATTAGAAGCTCCTACATCTTAGTTTAAATGTTCCTAAAACCTTTTTGTGCTTTTTATAGATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGA</genome_strand>
        <mrna_strand>CTTTGTCTCATGAACTGAAAGAGGCCCTTGGTATGCCTGAAGGTGCTCCTCCTCCATGGCTCATCAATATGCAG............................................................................................................................AGATATGGTCCTCCACCCTCTTATCCTCAGCTGAAGATTCCTGGACTGAATGCTCCTATTCCACATGGAGCCAAGTTCGGTTATCAGCCGGGAGGTTGGGGTAAACCACCTGTTGATGAA................................................................................................................TATGGGCGCCCTTTATACGGAGATGTCTTTGGTGTATTGCAACAAGATCAGCCTAATTATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACCTGTTGATAAGACTAAACATTGGGGTGACTTGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGTTGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCAAG............................................................................................................................................................TACTCCTACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTATCAG........................................................................................GTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATAC........................................................................................................GTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCAAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................GTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA........................................................................................ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693508" ref_strand="+" ref_description="SGN-E693508 [LH_Ea01I02](-)">
      <seq>ctaattatgaggatgaacctgttgataagactaaacattggggtgacttggaggaagaggaagaagaggaggaagaggaggaagaagaagagatggaggaagaggagatggaggacggtattcagtcagtggacagtctttcaagtactcctactggagttgagactcctgatgttattgaccttcgcaagcagcagaggaaggagcccgagaagcccctctaccaggtgcttgaagaaaaagaagaaaaggtagctcctggtactcttcttggaacaagccatacgtatgtgatcaacactggcgctcaagacaaggctggtgccaaaagggttgatctgctcaaaggtccgaagtcggatagagttgatgtcacattggcacctgaagagttggaacttatggacaatgttttaccagccaaatacgaggaagctagagaggaagagaagctccgtagccagcgtgaggatttcagtgacatggtagcagagaatgagaagaagaggaagcgtaaaatgcatgagaaggatggcaagtcgaagaagaaggatttcaacctttgcggttttgatatattgttccatctagtttagggctgcagtacatccagcttagggtaatagcatcagtaggtctcaatatgggctgcgataaatcttgtatgctgtgatgagagtgttttcccatgcgttgaagcggggagagttggtgaaagagaatctatcctatgaaatgtgcttagttcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="77763" stop="80050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77806" g_stop="77816" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.818"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77817" i_stop="78074" i_length="258">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78075" g_stop="78208" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="145" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78209" i_stop="78364" i_length="156">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78365" g_stop="78446" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="227" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78447" i_stop="78534" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78535" g_stop="78593" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="286" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78594" i_stop="78697" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78698" g_stop="78743" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="332" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78744" i_stop="79128" i_length="385">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79129" g_stop="79220" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="424" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79309" g_stop="79378" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="494" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79379" i_stop="79493" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="79494" g_stop="79747" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="748" r_length="254" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="751" polyA_stop="760"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E693508" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77806" e_stop="77816"/>
          <exon e_start="78075" e_stop="78208"/>
          <exon e_start="78365" e_stop="78446"/>
          <exon e_start="78535" e_stop="78593"/>
          <exon e_start="78698" e_stop="78743"/>
          <exon e_start="79129" e_stop="79220"/>
          <exon e_start="79309" e_stop="79378"/>
          <exon e_start="79494" e_stop="79747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGATAAGGTAAAATAATGGGAACTGCACCATATTCAATATGGTAAATAGAGAATACTTAAATTGACTACTTGATTTTGGTAAACATGCAATGGTATAGACCTACTGATGATGTTTCTATATTGTTAGTAAATTCTCTATCTTAAAAAAATATTGTTAATACATTCATAAATGTGGCCTTGTAGTTGGTGCACAAAAGCTTGGGCCTCGCCTTTTTGCTCGGTGTATTACGTAAATTAATATCATGCTGCTCATCTATATGTGTAGGATGAACCTGTTGATAAGACTAAACATTGGGGTGACTTGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGTTGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCAAGGTACTGACTTGATCAATTCCTTTAATGATCAAATATCTATCAGAAATCTTGTAGTAGCTTGAAGTCTTCCTCATTTTTGGTTCCCTTTCACTAATTTATTCGTTCTTGCTGAGATCCATTTTAGCTTTGTTCTCAATGTATCTCTCTATGGTGTAGTACTCCTACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTATCAGGTAATTAGGCCAACTTTTTGTCTCCCAGTTTCTATATTCTCTCTGCTTTCTTTTCCGTCCTTGTAAATTACATCTCTTTTCTGTATAGGTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATACGTAAGTAATCTATCTATTTATCTATACTCACATATATGTAGCTTTGGACACTAGCATTTATCCTTTCCTCTACTGTGCAATTGATTTATGCTCTCATTCTGCAGGTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCAAAAGGGTAAGGCTATCTTTTTCTTTGTCATGTGTTCAAATGCAGGTTTACTTTCTCAAGCAGAAATCTTCATAGAGTGACATGGTCTCAGTAGCGTCAGCCCCTATTGGTGGGGCTATAGCTGCTGTGGACAAGTCACATATGTTGAATTTTTCAGCTTATTCTTGTTAGTTGGTCACTGATGGAAAAGACAGTTCAAGATAAAGAGGCAAAGTACTTCAATTTCATTTGTCACTTTCTGACATATCTTGTTACATTTTGACTAATTATTTGATACTTCACTTTTATTTGCGTCACTTTCTTATATTAATGCTTACAGTTGGTTTTTCTTCTAGAAGAGGCACTAGATTAGAATTTGCGGCTAATTAATTGCTTGGAATGTCCACTTTAGGTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAAGTAATTAATGATTCTTTTAACATTTTATGATTAGAAGCTCCTACATCTTAGTTTAAATGTTCCTAAAACCTTTTTGTGCTTTTTATAGATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAGGTTTGTGGTTACATCATCTCTTCTTCATTCTTTCTCTCCATATTACCTTACATTTCATTGGATTGTTGGTTTAGAAAGAGTGACTATCAGTTCTGATGAGATAAAATTACTGCAGAATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTT</genome_strand>
        <mrna_strand>CTAATTATGAG..................................................................................................................................................................................................................................................................GATGAACCTGTTGATAAGACTAAACATTGGGGTGACTTGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGATGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCAAG............................................................................................................................................................TACTCCTACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTACCAG........................................................................................GTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATAC........................................................................................................GTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCAAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................GTTGATCTGCTCAAAGGTCCGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA........................................................................................ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAG...................................................................................................................AATGAGAAGAAGAGGAAGCGTAAAATGCATGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAACCTTTGCGGTTTTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATCAGTAGGTCTCAATATGGGCTGCGATAAATCTTGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGAAAGAGAATCTATCCTATGAAATGTGCTTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689668" ref_strand="+" ref_description="SGN-E689668 [LH_Ea01I02]">
      <seq>cattttaattatgaggatgaacctgttgataagactaaaccctggggtgacttggaggaagaggaacaagaggaggaagaggaggaagaagaagagatggaggaagaggagatggaggacggtattcagtcagtggacagtctttcacgtactccgactggagttgagactcctgatgttattgaccttcccaagcagcagaggaaggagcccgagaagcccctctaccaggtgcttgaagaaaaagaagaaaaggtagctcctggtactcttcttggaacaagccatacgtatgtgatcaacactggcgctcaagacaaggctggtgccacaagggttgatctgctcaaaggtcagaagtcggatagagttgatgtcacattggcacctgaagagttggaacttatggacaatgttttaccagccaaatacgaggaagctgcagaggaagagaagctccgtagcccgcgtgaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="77760" stop="79659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78075" g_stop="78208" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="149" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78209" i_stop="78364" i_length="156">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78365" g_stop="78446" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="231" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78447" i_stop="78534" i_length="88">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78535" g_stop="78593" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="290" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78594" i_stop="78697" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78698" g_stop="78743" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="336" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78744" i_stop="79128" i_length="385">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79129" g_stop="79220" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="428" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79309" g_stop="79359" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="479" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E689668" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78075" e_stop="78208"/>
          <exon e_start="78365" e_stop="78446"/>
          <exon e_start="78535" e_stop="78593"/>
          <exon e_start="78698" e_stop="78743"/>
          <exon e_start="79129" e_stop="79220"/>
          <exon e_start="79309" e_stop="79359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAACCTGTTGATAAGACTAAACATTGGGGTGACTTGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGTTGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCAAGGTACTGACTTGATCAATTCCTTTAATGATCAAATATCTATCAGAAATCTTGTAGTAGCTTGAAGTCTTCCTCATTTTTGGTTCCCTTTCACTAATTTATTCGTTCTTGCTGAGATCCATTTTAGCTTTGTTCTCAATGTATCTCTCTATGGTGTAGTACTCCTACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTATCAGGTAATTAGGCCAACTTTTTGTCTCCCAGTTTCTATATTCTCTCTGCTTTCTTTTCCGTCCTTGTAAATTACATCTCTTTTCTGTATAGGTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATACGTAAGTAATCTATCTATTTATCTATACTCACATATATGTAGCTTTGGACACTAGCATTTATCCTTTCCTCTACTGTGCAATTGATTTATGCTCTCATTCTGCAGGTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCAAAAGGGTAAGGCTATCTTTTTCTTTGTCATGTGTTCAAATGCAGGTTTACTTTCTCAAGCAGAAATCTTCATAGAGTGACATGGTCTCAGTAGCGTCAGCCCCTATTGGTGGGGCTATAGCTGCTGTGGACAAGTCACATATGTTGAATTTTTCAGCTTATTCTTGTTAGTTGGTCACTGATGGAAAAGACAGTTCAAGATAAAGAGGCAAAGTACTTCAATTTCATTTGTCACTTTCTGACATATCTTGTTACATTTTGACTAATTATTTGATACTTCACTTTTATTTGCGTCACTTTCTTATATTAATGCTTACAGTTGGTTTTTCTTCTAGAAGAGGCACTAGATTAGAATTTGCGGCTAATTAATTGCTTGGAATGTCCACTTTAGGTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAAGTAATTAATGATTCTTTTAACATTTTATGATTAGAAGCTCCTACATCTTAGTTTAAATGTTCCTAAAACCTTTTTGTGCTTTTTATAGATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTT</genome_strand>
        <mrna_strand>GATGAACCTGTTGATAAGACTAAACCCTGGGGTGACTTGGAGGAAGAGGAACAAGAGGAGGAAGAGGAGGAAGAAGAAGAGATGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCACG............................................................................................................................................................TACTCCGACTGGAGTTGAGACTCCTGATGTTATTGACCTTCCCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTACCAG........................................................................................GTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATAC........................................................................................................GTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................GTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA........................................................................................ATACGAGGAAGCTGCAGAGGAAGAGAAGCTCCGTAGCCCGCGTGAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730280" ref_strand="+" ref_description="SGN-E730280 [LA23CE12]">
      <seq>tgtttgatctgctcttaggtcagaagtcggatagagttgatgtcacattggcacctgaagagttggaacttatggacaatgttttaccagccaaatacgaggaagctagagaggaagagaagctccgtagccagcgtgaggatttcagtgacatggtagcagagaatgaaaataagaggaagcgtaaaatgcaggagaaggatggcaagtcgaagaagaaggatttcaagttttgaggttctgatatattgttccatctagtttagggctgcagtacatccagcttagggtaatagcattagtaggtctccatatgcactgcgataaatctcgtatgctgtgatgagagtgttttcccatgcgttgaagcggggagagttggtgtatgataatctatcctatgaaatgtgcttagtttgaacctcttgtttcatttctacatacgttgagctgtatgtgaaaatagaaaatctcttgccctaatttagatgtatgctcgacttggttataattttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="78828" stop="80145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79127" g_stop="79220" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79309" g_stop="79378" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="164" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79379" i_stop="79493" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79494" g_stop="79851" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="522" r_length="358" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E730280" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79127" e_stop="79220"/>
          <exon e_start="79309" e_stop="79378"/>
          <exon e_start="79494" e_stop="79851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAAGTAATTAATGATTCTTTTAACATTTTATGATTAGAAGCTCCTACATCTTAGTTTAAATGTTCCTAAAACCTTTTTGTGCTTTTTATAGATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAGGTTTGTGGTTACATCATCTCTTCTTCATTCTTTCTCTCCATATTACCTTACATTTCATTGGATTGTTGGTTTAGAAAGAGTGACTATCAGTTCTGATGAGATAAAATTACTGCAGAATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTAGTATTA</genome_strand>
        <mrna_strand>TGTTTGATCTGCTCTTAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA........................................................................................ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAG...................................................................................................................AATGAAAATAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGAACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732975" ref_strand="+" ref_description="SGN-E732975 [LB03CE12]">
      <seq>gttgatctgctcaaaggtcagaagtcggatagagttgatgtcacattggcacctgaagagttggaacttatggacaatgttttaccagccaaatacgaggaagctagagaggaagagaagctccgtagccagcgtgaggatttcagtgacatggtagcagagaatgagaagaagaggaagcgtaaaatgcaggagaaggatggcaagtcgaagaagaaggatttcaagttttgaggttctgatatattgttccatctagtttagggctgcagtacatccagcttagggtaatagcattagtaggtctccatatgcactgcgataaatctcgtatgctgtgatgagagtgttttcccatgcgttgaagcggggagagttggtgtatgataatctatcctatgaaatgtgcttagtttgtacctcttgtttcatttctacatacgttgagctgtatgtgaaaatagaaaatctcttgccctaatttagatgtatgctcgacttggttataattttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcttgggggggggggcggggccccctttccccccaaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="78829" stop="139840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79129" g_stop="79220" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79309" g_stop="79378" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="162" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79379" i_stop="79493" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79494" g_stop="79845" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="514" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79846" i_stop="80388" i_length="543">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80389" g_stop="80476" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="601" r_length="87" r_score="0.511"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E732975" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79129" e_stop="79220"/>
          <exon e_start="79309" e_stop="79378"/>
          <exon e_start="79494" e_stop="79845"/>
          <exon e_start="80389" e_stop="80476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAAGTAATTAATGATTCTTTTAACATTTTATGATTAGAAGCTCCTACATCTTAGTTTAAATGTTCCTAAAACCTTTTTGTGCTTTTTATAGATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAGGTTTGTGGTTACATCATCTCTTCTTCATTCTTTCTCTCCATATTACCTTACATTTCATTGGATTGTTGGTTTAGAAAGAGTGACTATCAGTTCTGATGAGATAAAATTACTGCAGAATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTAGTATTAGATTGTACAAACTTTTGGTGATTACCCTTTGCCATTTCCTGTGTGCCCACCATATTTATTTCACAAAAATATCAAACAAAGCCTACAAGGATTCTTAATTGAAATAGAACGAAACTAGTAAAGTTCACCTCTTGTCTCTTTTTGTGCATTATTGAGTATTCATAAACAATGGTGAATTAAATAACGATATGGTGTGTATCTTACTTTTGTAATGAATTAAATATTCCTCTAAAAAATATATGCACGAAATAATTAAAACTTGCATCATCATTTATTAGTAATTGTTACATTCTAATTTCTGTATAACTTTTTCTGGCTCAGAATTGCATAGTGGTTATAATCATGCAAATGGGCGGCTGAGCTTAATGGAAATATATCATGATGAATATTTTGTGCACTGATTAGTACATGGATGAGATTTTCATTTTCATGATTTAACCAAGCTGGAACCTTATCATACAAATCTTTTTTTAAAAAGTGGTCCATTTATTTGGTAAACCCCATCATGTCTAATGATTTCTCCCATTAATTAATTGTTAAAACATTAATACAATAAACAGAATTAAAAAAAAAGGATCGAACATAGAATAAGCAGTGATGGAGACATCTTTTGTTCAAAACACGT</genome_strand>
        <mrna_strand>GTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA........................................................................................ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAG...................................................................................................................AATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTGGGGGGGGGGGCGGGGCCCCCT-TTCCCCCCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713475" ref_strand="+" ref_description="SGN-E713475 [FB08DA02]">
      <seq>aatagttggaacttatggacaatgttttaccagccaaatacgaggaagctagagaggaagagaagctccgtagccagcgtgaggatttcagtgacatggtagcagagaatgagaagaagaggaagcgtaaaatgcaggagaaggatggcaagtcgaagaagaaggatttcaagttttgaggttctgatatattgttccatctagtttagggctgcagtacatccagcttagggtaatagcattagtaggtctccatatgcactgcgataaatctcgtatgctgtgatgagagtgttttcccatgcgttgaagcggggagagttggtgtatgataatctatcctatgaaatgtgcttagtttgtacctcttgtttcatttctacatacgttgagctgtatgtgaaaatagaaaatctcttgccctaatttagatgtatgctcgacttggttataattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnnctgggggggggggggggggccctttttcccttttagggggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="78884" stop="139817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79184" g_stop="79220" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79309" g_stop="79378" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="107" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79379" i_stop="79493" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79494" g_stop="79845" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="459" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79846" i_stop="80411" i_length="566">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80412" g_stop="80442" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="490" r_length="31" r_score="0.645"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80443" i_stop="81000" i_length="558">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81001" g_stop="81018" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="508" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81019" i_stop="82170" i_length="1152">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82171" g_stop="82241" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="577" r_length="69" r_score="0.465"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E713475" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79184" e_stop="79220"/>
          <exon e_start="79309" e_stop="79378"/>
          <exon e_start="79494" e_stop="79845"/>
          <exon e_start="80412" e_stop="80442"/>
          <exon e_start="81001" e_stop="81018"/>
          <exon e_start="82171" e_stop="82241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAAGTAATTAATGATTCTTTTAACATTTTATGATTAGAAGCTCCTACATCTTAGTTTAAATGTTCCTAAAACCTTTTTGTGCTTTTTATAGATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAGGTTTGTGGTTACATCATCTCTTCTTCATTCTTTCTCTCCATATTACCTTACATTTCATTGGATTGTTGGTTTAGAAAGAGTGACTATCAGTTCTGATGAGATAAAATTACTGCAGAATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTAGTATTAGATTGTACAAACTTTTGGTGATTACCCTTTGCCATTTCCTGTGTGCCCACCATATTTATTTCACAAAAATATCAAACAAAGCCTACAAGGATTCTTAATTGAAATAGAACGAAACTAGTAAAGTTCACCTCTTGTCTCTTTTTGTGCATTATTGAGTATTCATAAACAATGGTGAATTAAATAACGATATGGTGTGTATCTTACTTTTGTAATGAATTAAATATTCCTCTAAAAAATATATGCACGAAATAATTAAAACTTGCATCATCATTTATTAGTAATTGTTACATTCTAATTTCTGTATAACTTTTTCTGGCTCAGAATTGCATAGTGGTTATAATCATGCAAATGGGCGGCTGAGCTTAATGGAAATATATCATGATGAATATTTTGTGCACTGATTAGTACATGGATGAGATTTTCATTTTCATGATTTAACCAAGCTGGAACCTTATCATACAAATCTTTTTTTAAAAAGTGGTCCATTTATTTGGTAAACCCCATCATGTCTAATGATTTCTCCCATTAATTAATTGTTAAAACATTAATACAATAAACAGAATTAAAAAAAAAGGATCGAACATAGAATAAGCAGTGATGGAGACATCTTTTGTTCAAAACACGTGTCAACTATAATTGAATCATTAGAAAATTATACTATATTCTATACATAGTTAAATTTCATTAAATTCATCTTTAAAAATAAATGTGACGTTATTTAATATTAAAATTGATATAGTGGGTTTATGTAAACACGTGCAATTGTTAATTAATTAATCCACACGTTAGGCTGTCAAATTAGAATGTTTTTTCGTCTTCATAATTTCAACTTGAATTCATTATTTTAATTAAATTTGAATCTAAGCTTTATAACTAAGCTATGAAGAAGTCCTAGTTGTCCGACCAAAAAATATTCTTTTTTGTCATTTTCTTTTAATAATATTTAAGGGGAAAAAACATTCTCATAGTGACAGTACCTAACAAACCGACCACGTTTGAATTTGTACAAATAATAATAAATATATCTTACTAATTTAACATTCAGAGAATTTTAATTATATGCTTGACTAGGCTTATTTTCCTGTGGTTTTTCATATTTATAATTATTTAATTAATTTTCATTTAAATATTCGTCTACTTTTTTTTTTCAAAAAAAAAAAAAAACAAATGATGTGAATGGTTATCGCACTTCAGGGATGCACACATCAAATTAGGGTAATTTGATCTTTTTATATGATTTGAAAATTCTAAACGGTTAATATAGATTATTTATGTTAATTTAGAATAGTTATATCTATCTTTTTATGTTTGTGATATATATAGAGTAAATATTGAATTTCGTTGACTTCTTTCTATATTTTTACTTTTTTATATTTTAAATTTTTTCGATGAAAATTATTAGTAGAACATATCATAGTAAATATAGAGAAATGAACAAAAACCAAACATATTTGACACTACCGCTGACTTTCACGACTGGATATTGTTGCAGCCAATATATTCATCATCATACCATTGAAAATAATGACCATTATGTTATGGTTTATGTTTATTTATTGGCGGGTCCAAGGAAGAGTCGGACCATATATTTATATATCACAAGCTTGAATTCATGAAGTTTTGATTCGTGATGATAATTTTACTGATTGCGTCAAATTAAAGCTCTAAGTTTTTATTTTAGAAAATACAATACATCATATATAACTTAGTTTAAAACTATAAAATTAATCAGTCTTATTTTCTCTTTATGTTTACTTTAATTTAGTCAAGCTAAGACAGTTAAAATAAAATGACGAAAGTTCTTTTATACACTTGTGTATTTTCTATAAGTTTATGTCATCCTAAAAGCCTCCTTGTTTGGATGGATGTTAGTTATTGTATTGTATTGTGTTATTAATTTAAATATAATAATTGTTTTGATTGTTACTTAAATTTCATTTATCGTTAAATTTATCATCTGATAAAGAAAATTGAAAAGTTTCTTTTTCATTTTATTTTTATTTATTATTTAAGAATTTTTTTTTTTAATAATATCTCTATCCCAACTCACTTTTTTTTAAATAAATTTAATATGTAACATTATATTACAACAAATAACAATACTAAATAATCTATTCATTAAAACAATATCTACCAACCATTTAAATAAATTACTTCCACACTATATGCCCAAACTCTACATGTAAATCTCATCAACCCCTTTATAGCATAACAATTTCACAAGTGGAGTCAATATCAAACCGACCATTCCCTTTTATTCACTAAAAATAATTATATGAACTTGACTTGAAAAAATAATTTTGTATGTGTAATTTAAAGGAATATGAGAAAAAATAAAAATAAAAGGTGGGTGTTACCCTTTTGTAAGCATCTTCTTGGATCTGTATAAA</genome_strand>
        <mrna_strand>AATAGTTGGAACTTATGGACAATGTTTTACCAGCCAA........................................................................................ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAG...................................................................................................................AATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAANNNNCTGGGGGGGGGGGGGGGGGCCCTTTT-T-CCCTTTTAGGGGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377029" ref_strand="+" ref_description="SGN-E377029 [TUS-20-K19](-)">
      <seq>ccaaggccgatgaaggatccattcctccaagaatggatggtggcataaggatgaatgcgttcatgtgaatccattgagcagaaggaggttttggttgtatactctctaagcttttgcacttacttagactgtgatattggtaacgtggtatacttaaccctgttggcttgctgatttgacttcaacagaattagagattctgatcatttgtcgcgactttatgtgcatccttcatcattgtccaaaatttctgagtagggatatagacatagatagatataactgctacttgtgatttctgttatacaatgttttgaagaaagttttctggggccttgagatgattctaatgttcctataatcctattgccatttcacaatctgttttagtagaatattcatttttcttgacacggtttgaaactcagtgaataatggttctgcccgccctaccatccttccccccaaatgggtttgaatacctgttatgtgattgtgattgtgattgtaatagtgataacagataagtgtcatataaatatgttatcatttcatttataattaattacgatatattttcacctcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="86488" stop="85303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86188" g_stop="85604" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="607"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E377029" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86188" e_stop="85604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGATATAGACATAGATAGATATAACTGCTACTTGTGATTTCTGTTATACAATGTTTTGAAGAAAGTTTTCTGGGGCCTTGAGATGATTCTAATGTTCCTATAATCCTATTGCCATTTCACAATCTGTTTTAGTAGAATATTCATTTTTCTTGACACGGTTTGAAACTCAGTGAATAATGGTTCTGCCCGCCCTACTATCCTTCCCCCCAAATGGGTTTGAATACCTGTTATGTGATTGTGATTGTGATTGTAATAGTGATAACAGATAAGTGTCATATAAATATGTTATCATTTCATTTATAATTAATTACGATATATTTTCACCTC</genome_strand>
        <mrna_strand>CCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGATATAGACATAGATAGATATAACTGCTACTTGTGATTTCTGTTATACAATGTTTTGAAGAAAGTTTTCTGGGGCCTTGAGATGATTCTAATGTTCCTATAATCCTATTGCCATTTCACAATCTGTTTTAGTAGAATATTCATTTTTCTTGACACGGTTTGAAACTCAGTGAATAATGGTTCTGCCCGCCCTACCATCCTTCCCCCCAAATGGGTTTGAATACCTGTTATGTGATTGTGATTGTGATTGTAATAGTGATAACAGATAAGTGTCATATAAATATGTTATCATTTCATTTATAATTAATTACGATATATTTTCACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378509" ref_strand="+" ref_description="SGN-E378509 [TUS-20-K19]">
      <seq>aaaaatataaagtttgtatagctcgatggcttcaacactgttactagttttggtttttgtgcttgatttgattgcttttggacttgctgttgctgctgagcagaggagggctactgcaacgatcaacagagatgcagagtataactactgtgtgtatgagtcagatgttgcaactggcttgggcgtgggttcattcttctttcttttatctagtcagctcctcataatgtttgcaagccgatgtttatgctgtgggagggcactgcgaccaggaaagccccgatcatgggctattgtcttattcatcacctgctgggtcaccttctttattgctgaagtgtgcttactggcggcttccgttaggaatgcctaccacacaaagtataggacttacttggcacaacatcctccatcctgcgaggttttgaggaagggagtctttggtgctggcgctgcttttattgttttcacaggcatcgtctctgaacttttctacgtcagctattccaaggccgatgaaggatccattcctccaagaatggatggtggcataaggatgaatgcgttcatgtgaatccattgagcagaaggaggttttggttgtatactctctaagcttttgcacttacttagactgtgatattggtaacgtggtatacttaaccctgttggcttgctgatttgacttcaacagaattagagattctgatcatttgtcgcgactttatgtgcatccttcatcattgtccaaaatttctgagtagggatatagacatagatagatataactgctacttgtgatttctgttatancatggtttgaagaaagttttctggggccttgagatgattctaaatgtcctataatccctatgccatttcacatctgtttagtaggatattcatttttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="89168" stop="85478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88868" g_stop="88754" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88753" i_stop="86716" i_length="2038">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86715" g_stop="86516" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="315" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86515" i_stop="86380" i_length="136">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86379" g_stop="85778" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="915" r_length="600" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E378509" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88868" e_stop="88754"/>
          <exon e_start="86715" e_stop="86516"/>
          <exon e_start="86379" e_stop="85778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACTGTGAGTTCTTTTGCGATAATTCTTCTTCTGTTTTGCTCTTTCCTGTATGTTTTATTGTTATATTCTTCGTTCATCTTTCAGTATCATACTATATACTACTGTATTGGAGTTTTTTTGGTGTGGGTTTGTATGTTTAGGAATCGAAGAAATTATGTAGTAGCTATTTTAGAGGGTAAATAAATTCTCGACCCATAAAATTCTTCGTGTATTATGAACAGTAATTATGGTTTAGAACTAGCCAGGTTGAAGATAGTTGGATTATGCTATAGTATATAGTTTATAGCTTGTTGAGATGATATCCATGGAAGGACCCAGAAGTTGATTTAATGAACTTTTGAATTTTGAACAAGTAGGGTCATGCCCCTCTACTGGCCTACTACATGTGTCTGCTTATTGTTGTCGTCTATCAGATTACAGTCAAATTTCTTTCTAGGGTTTGGCAATATGGGACCTCTATGTATTCTGTTATATTGAGTGGCTTCTCATTTCTCAAATGGTGACTCAACTAGTAATAGTTATTATCTCAGAAAAATGATTTTCTAACTATCTGAGAATCTAATCCTCATTTTATGTAAGTAATGTCTTTTGAGTCTAATTAGAGGTTCTTTGCAAATCAAGGTTTTGTAAATTTTACACTTACCCCTATTCGAACTTAATGTAAGCGTCACAACATCAACAACTTAAGTTTAATCTGACCAGTGTTGGTAAATTGGATCCGTGCTTCCATTATGTATTATGTTTGCTAAGGCCTAAGTTCACATTGATACCTACAAATTCCTCCATCTGTTCATAGATCTACCTTGTTCGCTTTTATTACCATCTATCGCCATAGTGTCACATCTACAGATTAGTTTACATATGCTGAAGCTTGTCGTGATATCAGGTCAATTTTGTTACCTGAATAAAGGACTTGGTGACTTAGATGCTTTTAGTTATGTCAATCAAATATTAAGTTAGAAGCATTATTTTCCCATTCTCATTGTTATATAAGCACGTGAATAGATTTGCAAGTCTGACCTGAGATAATTCCCTATCCAACTTCTTGGGTGTGGATAAACTTGGAAGGAGTGCTAGTTATATCCTTTATTCAGTTGATTTAAAAAGGTTGTTTCGATGCTTTGATATTCCGCAAGTAACTTGATGCTCTTTTAAGATTTGGATAATCAAATTAGAAAAGTAACTTGTTCAGTCACATCGCCATATAAACAAGTGAGTGGATTAGAAAGTGTGGCCAGAGATCTCAAGTACATGTGGACCTTCCCTTTCAAGATACTATGCATCAACTTCATCCATGGTATTATTACATCTTGCTTGGTGTTCTCTCTTCTTCCCTTGAATCTCCGTGCGTGTGGTTGGAAGGTGAGGTGATTATAATCTTTTGTTAGGTCTGTATTAAATCAACCCCAATATGTATGTCTACTCTCTAAGAGAGTTAACCAATGTTGATGTCCTTGATCAAATGCAAGTGGAGTAGAAGTTGTCCGAGCATGTGAGTCTTTACGTGATCTGATGTGATAAGAGTTCTCATTGACTTTTTGAGGTTAGCAGACAGGAACCGATCATGACAGACTAGTTCTGCAAGAACAGCGAAGTTACCAAGTAACACGTACATATTCAAAATGGACATGGTTCATAGCTTACATGCAGGGACGGTTATAGTCGTTGTAGGAGCCAACTTAGATGGTGGCCTAAGGGGAAATGTGAGATTTCAGAGCAGTTAGAAGAAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGTGTTTTAGTTTAATATTATAACAGCATTTCTGACTTAGCTATTTTTGCTATAAGGTTGATGTTTCTATACTTGACAATGTTTAGTACTAATAATATACAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGGGTTTTAGTTTAAAATTATAAAAGCATTTCTGACTTAGCTATTTTTTGCTATAAGGTTGATGTTTCTATACTTGACAACATTTAGTATTAATAATATACATTTTCAGTAAGTTTAATTTTTGGGTTCTTTATTTCAGGCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTGGTATGTTTCTCTGTAAACATGGTTCATGAACTACATTTTAGTGTTTGCTAGCCAGAGTAGAGACATAATGATTTCACTGATGTATGCAAGAATCTATTCAAATATGAGAGAAACAATTATGTCTTGAATTTTTCAGGGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGATATAGACATAGATAGATATAACTGCTACTTGTGATTTCTGTTATACAATGTTTTGAAGAAAGTTTTCTGGGGCCTTGAGATGATTCTAATGTTCCTATAATCCTATTGCCATTTCACAATCTGTTTTAGTAGAATATTCATTTTTCTTGA</genome_strand>
        <mrna_strand>AAAAATATAAAGTTTGTATAGCTCGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTG........................................................................................................................................GGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGATATAGACATAGATAGATATAACTGCTACTTGTGATTTCTGTTATANCATGGTTTGAAGAAAGTTTTCTGGGGCCTTGAGATGATTCTAAATGTCCTATAATCCCTATGCCATTTCAC-ATCTG-TTTAGTAGGATATTCATTTTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577648" ref_strand="+" ref_description="SGN-E577648 [LE15BC08]">
      <seq>ttttttttttttttttaaatggcaataggattataggaacattagaatcatctcaaggccccagaaaactttcttcaaaacattgtataacagaaatcacaagtagcagttatatctatctatgtctatatccctactcagaaattttggacaatgatgaaggatgcacataaagtcgcgacaaatgatcagaatctctaattctgttgaagtcaaatcagcaagccaacagggttaagtataccacgttaccaatatcacagtctaagtaagtgcaaaagcttagagagtatacaaccaaaacctccttctgctcaatggattcacatgaacgcattcatccttatgccaccatccattcttggaggaatggatccttcatcggccttggaatagctgacgtagaaaagttcagagacgatgcctgtgaaaacaataaaagcagcgccagcaccaaagactcccttcctcaaaacctcgcaggatggaggatgttgtgccaagtaagtcctatactttgtgtggtaggcattcctaacggaagccgccagtaagcacacttcagcaataaagaaggtgacccagcaggtgatgaataagacaatagcccatgatcggggctttcctggtcgcagtgccctcccacagcataaacatcgggcttgcaaacattatgaggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="85509" stop="86915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85808" g_stop="86373" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="576" r_length="566" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86374" i_stop="86505" i_length="132">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86506" g_stop="86615" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="683" r_length="107" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="10" polyA_stop="1"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E577648" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85808" e_stop="86373"/>
          <exon e_start="86506" e_stop="86615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTGAAATGGCAATAGGATTATAGGAACATTAGAATCATCTCAAGGCCCCAGAAAACTTTCTTCAAAACATTGTATAACAGAAATCACAAGTAGCAGTTATATCTATCTATGTCTATATCCCTACTCAGAAATTTTGGACAATGATGAAGGATGCACATAAAGTCGCGACAAATGATCAGAATCTCTAATTCTGTTGAAGTCAAATCAGCAAGCCAACAGGGTTAAGTATACCACGTTACCAATATCACAGTCTAAGTAAGTGCAAAAGCTTAGAGAGTATACAACCAAAACCTCCTTCTGCTCAATGGATTCACATGAACGCATTCATCCTTATGCCACCATCCATTCTTGGAGGAATGGATCCTTCATCGGCCTTGGAATAGCTGACGTAGAAAAGTTCAGAGACGATGCCTGTGAAAACAATAAAAGCAGCGCCAGCACCAAAGACTCCCTTCCTCAAAACCTCGCAGGATGGAGGATGTTGTGCCAAGTAAGTCCTATACTTTGTGTGGTAGGCATTCCTAACGGAAGCCGCCAGTAAGCACACTTCAGCAATAAAGAAGGTGACCCTGAAAAATTCAAGACATAATTGTTTCTCTCATATTTGAATAGATTCTTGCATACATCAGTGAAATCATTATGTCTCTACTCTGGCTAGCAAACACTAAAATGTAGTTCATGAACCATGTTTACAGAGAAACATACCAGCAGGTGATGAATAAGACAATAGCCCATGATCGGGGCTTTCCTGGTCGCAGTGCCCTCCCACAGCATAAACATC-GGCTTGCAAACATTATGAGGAGCT</genome_strand>
        <mrna_strand>TTTTTTAAATGGCAATAGGATTATAGGAACATTAGAATCATCTCAAGGCCCCAGAAAACTTTCTTCAAAACATTGTATAACAGAAATCACAAGTAGCAGTTATATCTATCTATGTCTATATCCCTACTCAGAAATTTTGGACAATGATGAAGGATGCACATAAAGTCGCGACAAATGATCAGAATCTCTAATTCTGTTGAAGTCAAATCAGCAAGCCAACAGGGTTAAGTATACCACGTTACCAATATCACAGTCTAAGTAAGTGCAAAAGCTTAGAGAGTATACAACCAAAACCTCCTTCTGCTCAATGGATTCACATGAACGCATTCATCCTTATGCCACCATCCATTCTTGGAGGAATGGATCCTTCATCGGCCTTGGAATAGCTGACGTAGAAAAGTTCAGAGACGATGCCTGTGAAAACAATAAAAGCAGCGCCAGCACCAAAGACTCCCTTCCTCAAAACCTCGCAGGATGGAGGATGTTGTGCCAAGTAAGTCCTATACTTTGTGTGGTAGGCATTCCTAACGGAAGCCGCCAGTAAGCACACTTCAGCAATAAAGAAG....................................................................................................................................-GTGAC---CCAGCAGGTGATGAATAAGACAATAGCCCATGATCGGGGCTTTCCTGGTCGCAGTGCCCTCCCACAGCATAAACATCGGGCTTGCAAACATTATGAGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703865" ref_strand="+" ref_description="SGN-E703865 [FA22CG04]">
      <seq>caaaaatataaagtttgtatagcaagatggcttcaacactgttactagttttggtttttgtgcttgatttgattgcttttggacttgctgttgctgctgagcagaggagggctactgcaacgatcaacagagatgcagagtataactactgtgtgtatgagtcagatgttgcaactggcttgggcgtgggttcattcttctttcttttatctagtcagctcctcataatgtttgcaagccgatgtttatgctgtgggagggcactgcgaccaggaaagccccgatcatgggctattgtcttattcatcacctgctgggtcaccttctttattgctgaagtgtgcttactggcggcttccgttaggaatgcctaccacacaaagtataggacttacttggcacaacatcctccatcctgcgaggttttgaggaagggagtctttggtgctggcgctgcttttattgttttcacaggcatcgtctctgaacttttctacgtcagctattccaaggccgatgaaggatccattcctccaagaatggatggtggcataaggatgaatgcgttcatgtgaatccattgagcagaaggaggttttggttgtatactctctaagcttttgcacttacttagactgtgatattggtaacgtggtatacttaaccctgttggcttgctgatttgacttcaacagaattagagattctgatcatttgtcgcgactttatgtgcatccttcatcattgtccaaaatttctgagtagggatatagacatagatagatataactgctacttgtgatttctgttatacaatgttttgaagaaagttttctggggccttgagatgattctaatgttcctataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="89169" stop="85528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88869" g_stop="88754" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88753" i_stop="86716" i_length="2038">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86715" g_stop="86516" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="316" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86515" i_stop="86380" i_length="136">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86379" g_stop="85828" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="868" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E703865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88869" e_stop="88754"/>
          <exon e_start="86715" e_stop="86516"/>
          <exon e_start="86379" e_stop="85828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACTGTGAGTTCTTTTGCGATAATTCTTCTTCTGTTTTGCTCTTTCCTGTATGTTTTATTGTTATATTCTTCGTTCATCTTTCAGTATCATACTATATACTACTGTATTGGAGTTTTTTTGGTGTGGGTTTGTATGTTTAGGAATCGAAGAAATTATGTAGTAGCTATTTTAGAGGGTAAATAAATTCTCGACCCATAAAATTCTTCGTGTATTATGAACAGTAATTATGGTTTAGAACTAGCCAGGTTGAAGATAGTTGGATTATGCTATAGTATATAGTTTATAGCTTGTTGAGATGATATCCATGGAAGGACCCAGAAGTTGATTTAATGAACTTTTGAATTTTGAACAAGTAGGGTCATGCCCCTCTACTGGCCTACTACATGTGTCTGCTTATTGTTGTCGTCTATCAGATTACAGTCAAATTTCTTTCTAGGGTTTGGCAATATGGGACCTCTATGTATTCTGTTATATTGAGTGGCTTCTCATTTCTCAAATGGTGACTCAACTAGTAATAGTTATTATCTCAGAAAAATGATTTTCTAACTATCTGAGAATCTAATCCTCATTTTATGTAAGTAATGTCTTTTGAGTCTAATTAGAGGTTCTTTGCAAATCAAGGTTTTGTAAATTTTACACTTACCCCTATTCGAACTTAATGTAAGCGTCACAACATCAACAACTTAAGTTTAATCTGACCAGTGTTGGTAAATTGGATCCGTGCTTCCATTATGTATTATGTTTGCTAAGGCCTAAGTTCACATTGATACCTACAAATTCCTCCATCTGTTCATAGATCTACCTTGTTCGCTTTTATTACCATCTATCGCCATAGTGTCACATCTACAGATTAGTTTACATATGCTGAAGCTTGTCGTGATATCAGGTCAATTTTGTTACCTGAATAAAGGACTTGGTGACTTAGATGCTTTTAGTTATGTCAATCAAATATTAAGTTAGAAGCATTATTTTCCCATTCTCATTGTTATATAAGCACGTGAATAGATTTGCAAGTCTGACCTGAGATAATTCCCTATCCAACTTCTTGGGTGTGGATAAACTTGGAAGGAGTGCTAGTTATATCCTTTATTCAGTTGATTTAAAAAGGTTGTTTCGATGCTTTGATATTCCGCAAGTAACTTGATGCTCTTTTAAGATTTGGATAATCAAATTAGAAAAGTAACTTGTTCAGTCACATCGCCATATAAACAAGTGAGTGGATTAGAAAGTGTGGCCAGAGATCTCAAGTACATGTGGACCTTCCCTTTCAAGATACTATGCATCAACTTCATCCATGGTATTATTACATCTTGCTTGGTGTTCTCTCTTCTTCCCTTGAATCTCCGTGCGTGTGGTTGGAAGGTGAGGTGATTATAATCTTTTGTTAGGTCTGTATTAAATCAACCCCAATATGTATGTCTACTCTCTAAGAGAGTTAACCAATGTTGATGTCCTTGATCAAATGCAAGTGGAGTAGAAGTTGTCCGAGCATGTGAGTCTTTACGTGATCTGATGTGATAAGAGTTCTCATTGACTTTTTGAGGTTAGCAGACAGGAACCGATCATGACAGACTAGTTCTGCAAGAACAGCGAAGTTACCAAGTAACACGTACATATTCAAAATGGACATGGTTCATAGCTTACATGCAGGGACGGTTATAGTCGTTGTAGGAGCCAACTTAGATGGTGGCCTAAGGGGAAATGTGAGATTTCAGAGCAGTTAGAAGAAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGTGTTTTAGTTTAATATTATAACAGCATTTCTGACTTAGCTATTTTTGCTATAAGGTTGATGTTTCTATACTTGACAATGTTTAGTACTAATAATATACAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGGGTTTTAGTTTAAAATTATAAAAGCATTTCTGACTTAGCTATTTTTTGCTATAAGGTTGATGTTTCTATACTTGACAACATTTAGTATTAATAATATACATTTTCAGTAAGTTTAATTTTTGGGTTCTTTATTTCAGGCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTGGTATGTTTCTCTGTAAACATGGTTCATGAACTACATTTTAGTGTTTGCTAGCCAGAGTAGAGACATAATGATTTCACTGATGTATGCAAGAATCTATTCAAATATGAGAGAAACAATTATGTCTTGAATTTTTCAGGGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGATATAGACATAGATAGATATAACTGCTACTTGTGATTTCTGTTATACAATGTTTTGAAGAAAGTTTTCTGGGGCCTTGAGATGATTCTAATGTTCCTATAA</genome_strand>
        <mrna_strand>CAAAAATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTG........................................................................................................................................GGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGATATAGACATAGATAGATATAACTGCTACTTGTGATTTCTGTTATACAATGTTTTGAAGAAAGTTTTCTGGGGCCTTGAGATGATTCTAATGTTCCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327846" ref_strand="+" ref_description="SGN-E327846 [cTOC-20-P18]">
      <seq>atataaagtttgtatagcaagatggcttcaacactgttactagttttggtttttgtgcttgatttgattgcttttggacttgctgttgctgctgagcagaggagggctactgcaacgatcaacagagatgcagagtataactactgtgtgtatgagtcagatgttgcaactggcttgggcgtgggttcattcttctttcttttatctagtcagctcctcataatgtttgcaagccgatgtttatgctgtgggagggcactgcgaccaggaaagccccgatcatgggctattgtcttattcatcacctgctgggtcaccttctttattgctgaagtgtgcttactggcggcttccgttaggaatgcctaccacacaaagtataggacttacttggcacaacatcctccatcctgcgaggttttgaggaagggagtctttggtgctggcgctgcttttattgttttcacaggcatcgtctctgaacttttctacgtcagctattccaaggccgatgaaggatccattcctccaagaatggatggtggcataaggatgaatgcgttcatgtgaatccattgagcagaaggaggttttggttgtatactctctaagcttttgcacttacttagactgtgatattggtaacgtggtatacttaaccctgttggcttgctgatttgacttcaacagaattagagattctgatcatttgtcgcgactttatgtgcatccttcatcattgtccaaaatttctgagtaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="89164" stop="85628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88864" g_stop="88754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88753" i_stop="86716" i_length="2038">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86715" g_stop="86516" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="311" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86515" i_stop="86380" i_length="136">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86379" g_stop="85928" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="763" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E327846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88864" e_stop="88754"/>
          <exon e_start="86715" e_stop="86516"/>
          <exon e_start="86379" e_stop="85928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACTGTGAGTTCTTTTGCGATAATTCTTCTTCTGTTTTGCTCTTTCCTGTATGTTTTATTGTTATATTCTTCGTTCATCTTTCAGTATCATACTATATACTACTGTATTGGAGTTTTTTTGGTGTGGGTTTGTATGTTTAGGAATCGAAGAAATTATGTAGTAGCTATTTTAGAGGGTAAATAAATTCTCGACCCATAAAATTCTTCGTGTATTATGAACAGTAATTATGGTTTAGAACTAGCCAGGTTGAAGATAGTTGGATTATGCTATAGTATATAGTTTATAGCTTGTTGAGATGATATCCATGGAAGGACCCAGAAGTTGATTTAATGAACTTTTGAATTTTGAACAAGTAGGGTCATGCCCCTCTACTGGCCTACTACATGTGTCTGCTTATTGTTGTCGTCTATCAGATTACAGTCAAATTTCTTTCTAGGGTTTGGCAATATGGGACCTCTATGTATTCTGTTATATTGAGTGGCTTCTCATTTCTCAAATGGTGACTCAACTAGTAATAGTTATTATCTCAGAAAAATGATTTTCTAACTATCTGAGAATCTAATCCTCATTTTATGTAAGTAATGTCTTTTGAGTCTAATTAGAGGTTCTTTGCAAATCAAGGTTTTGTAAATTTTACACTTACCCCTATTCGAACTTAATGTAAGCGTCACAACATCAACAACTTAAGTTTAATCTGACCAGTGTTGGTAAATTGGATCCGTGCTTCCATTATGTATTATGTTTGCTAAGGCCTAAGTTCACATTGATACCTACAAATTCCTCCATCTGTTCATAGATCTACCTTGTTCGCTTTTATTACCATCTATCGCCATAGTGTCACATCTACAGATTAGTTTACATATGCTGAAGCTTGTCGTGATATCAGGTCAATTTTGTTACCTGAATAAAGGACTTGGTGACTTAGATGCTTTTAGTTATGTCAATCAAATATTAAGTTAGAAGCATTATTTTCCCATTCTCATTGTTATATAAGCACGTGAATAGATTTGCAAGTCTGACCTGAGATAATTCCCTATCCAACTTCTTGGGTGTGGATAAACTTGGAAGGAGTGCTAGTTATATCCTTTATTCAGTTGATTTAAAAAGGTTGTTTCGATGCTTTGATATTCCGCAAGTAACTTGATGCTCTTTTAAGATTTGGATAATCAAATTAGAAAAGTAACTTGTTCAGTCACATCGCCATATAAACAAGTGAGTGGATTAGAAAGTGTGGCCAGAGATCTCAAGTACATGTGGACCTTCCCTTTCAAGATACTATGCATCAACTTCATCCATGGTATTATTACATCTTGCTTGGTGTTCTCTCTTCTTCCCTTGAATCTCCGTGCGTGTGGTTGGAAGGTGAGGTGATTATAATCTTTTGTTAGGTCTGTATTAAATCAACCCCAATATGTATGTCTACTCTCTAAGAGAGTTAACCAATGTTGATGTCCTTGATCAAATGCAAGTGGAGTAGAAGTTGTCCGAGCATGTGAGTCTTTACGTGATCTGATGTGATAAGAGTTCTCATTGACTTTTTGAGGTTAGCAGACAGGAACCGATCATGACAGACTAGTTCTGCAAGAACAGCGAAGTTACCAAGTAACACGTACATATTCAAAATGGACATGGTTCATAGCTTACATGCAGGGACGGTTATAGTCGTTGTAGGAGCCAACTTAGATGGTGGCCTAAGGGGAAATGTGAGATTTCAGAGCAGTTAGAAGAAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGTGTTTTAGTTTAATATTATAACAGCATTTCTGACTTAGCTATTTTTGCTATAAGGTTGATGTTTCTATACTTGACAATGTTTAGTACTAATAATATACAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGGGTTTTAGTTTAAAATTATAAAAGCATTTCTGACTTAGCTATTTTTTGCTATAAGGTTGATGTTTCTATACTTGACAACATTTAGTATTAATAATATACATTTTCAGTAAGTTTAATTTTTGGGTTCTTTATTTCAGGCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTGGTATGTTTCTCTGTAAACATGGTTCATGAACTACATTTTAGTGTTTGCTAGCCAGAGTAGAGACATAATGATTTCACTGATGTATGCAAGAATCTATTCAAATATGAGAGAAACAATTATGTCTTGAATTTTTCAGGGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGA</genome_strand>
        <mrna_strand>ATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTG........................................................................................................................................GGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329106" ref_strand="+" ref_description="SGN-E329106 [cTOC-24-F14]">
      <seq>atataaagtttgtatagcaagatggcttcaacactgttactagttttggtttttgtgcttgatttgattgcttttggacttgctgttgctgctgagcagaggagggctactgcaacgatcaacagagatgcagagtataactactgtgtgtatgagtcagatgttgcaactggcttgggcgtgggttcattcttctttcttttatctagtcagctcctcataatgtttgcaagccgatgtttatgctgtgggagggcactgcgaccaggaaagccccgatcatgggctattgtcttattcatcacctgctgggtcaccttctttattgctgaagtgtgcttactggcggcttccgttaggaatgcctaccacacaaagtataggacttacttggcacaacatcctccatcctgcgaggttttgaggaagggagtctttggtgctggcgctgcttttattgttttcacaggcatcgtctctgaacttttctacgtcagctattccaaggccgatgaaggatccattcctccaagaatggatggtggcataaggatgaatgcgttcatgtgaatccattgagcagaaggaggttttggttgtatactctctaagcttttgcacttacttagactgtgatattggtaacgtggtatacttaaccctgttggcttgctgatttgacttcacagaattagagattctgatcatttgtcgcgactttatgtgcatccttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="89164" stop="85652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88864" g_stop="88754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88753" i_stop="86716" i_length="2038">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86715" g_stop="86516" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="311" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86515" i_stop="86380" i_length="136">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86379" g_stop="85952" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="738" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E329106" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88864" e_stop="88754"/>
          <exon e_start="86715" e_stop="86516"/>
          <exon e_start="86379" e_stop="85952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACTGTGAGTTCTTTTGCGATAATTCTTCTTCTGTTTTGCTCTTTCCTGTATGTTTTATTGTTATATTCTTCGTTCATCTTTCAGTATCATACTATATACTACTGTATTGGAGTTTTTTTGGTGTGGGTTTGTATGTTTAGGAATCGAAGAAATTATGTAGTAGCTATTTTAGAGGGTAAATAAATTCTCGACCCATAAAATTCTTCGTGTATTATGAACAGTAATTATGGTTTAGAACTAGCCAGGTTGAAGATAGTTGGATTATGCTATAGTATATAGTTTATAGCTTGTTGAGATGATATCCATGGAAGGACCCAGAAGTTGATTTAATGAACTTTTGAATTTTGAACAAGTAGGGTCATGCCCCTCTACTGGCCTACTACATGTGTCTGCTTATTGTTGTCGTCTATCAGATTACAGTCAAATTTCTTTCTAGGGTTTGGCAATATGGGACCTCTATGTATTCTGTTATATTGAGTGGCTTCTCATTTCTCAAATGGTGACTCAACTAGTAATAGTTATTATCTCAGAAAAATGATTTTCTAACTATCTGAGAATCTAATCCTCATTTTATGTAAGTAATGTCTTTTGAGTCTAATTAGAGGTTCTTTGCAAATCAAGGTTTTGTAAATTTTACACTTACCCCTATTCGAACTTAATGTAAGCGTCACAACATCAACAACTTAAGTTTAATCTGACCAGTGTTGGTAAATTGGATCCGTGCTTCCATTATGTATTATGTTTGCTAAGGCCTAAGTTCACATTGATACCTACAAATTCCTCCATCTGTTCATAGATCTACCTTGTTCGCTTTTATTACCATCTATCGCCATAGTGTCACATCTACAGATTAGTTTACATATGCTGAAGCTTGTCGTGATATCAGGTCAATTTTGTTACCTGAATAAAGGACTTGGTGACTTAGATGCTTTTAGTTATGTCAATCAAATATTAAGTTAGAAGCATTATTTTCCCATTCTCATTGTTATATAAGCACGTGAATAGATTTGCAAGTCTGACCTGAGATAATTCCCTATCCAACTTCTTGGGTGTGGATAAACTTGGAAGGAGTGCTAGTTATATCCTTTATTCAGTTGATTTAAAAAGGTTGTTTCGATGCTTTGATATTCCGCAAGTAACTTGATGCTCTTTTAAGATTTGGATAATCAAATTAGAAAAGTAACTTGTTCAGTCACATCGCCATATAAACAAGTGAGTGGATTAGAAAGTGTGGCCAGAGATCTCAAGTACATGTGGACCTTCCCTTTCAAGATACTATGCATCAACTTCATCCATGGTATTATTACATCTTGCTTGGTGTTCTCTCTTCTTCCCTTGAATCTCCGTGCGTGTGGTTGGAAGGTGAGGTGATTATAATCTTTTGTTAGGTCTGTATTAAATCAACCCCAATATGTATGTCTACTCTCTAAGAGAGTTAACCAATGTTGATGTCCTTGATCAAATGCAAGTGGAGTAGAAGTTGTCCGAGCATGTGAGTCTTTACGTGATCTGATGTGATAAGAGTTCTCATTGACTTTTTGAGGTTAGCAGACAGGAACCGATCATGACAGACTAGTTCTGCAAGAACAGCGAAGTTACCAAGTAACACGTACATATTCAAAATGGACATGGTTCATAGCTTACATGCAGGGACGGTTATAGTCGTTGTAGGAGCCAACTTAGATGGTGGCCTAAGGGGAAATGTGAGATTTCAGAGCAGTTAGAAGAAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGTGTTTTAGTTTAATATTATAACAGCATTTCTGACTTAGCTATTTTTGCTATAAGGTTGATGTTTCTATACTTGACAATGTTTAGTACTAATAATATACAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGGGTTTTAGTTTAAAATTATAAAAGCATTTCTGACTTAGCTATTTTTTGCTATAAGGTTGATGTTTCTATACTTGACAACATTTAGTATTAATAATATACATTTTCAGTAAGTTTAATTTTTGGGTTCTTTATTTCAGGCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTGGTATGTTTCTCTGTAAACATGGTTCATGAACTACATTTTAGTGTTTGCTAGCCAGAGTAGAGACATAATGATTTCACTGATGTATGCAAGAATCTATTCAAATATGAGAGAAACAATTATGTCTTGAATTTTTCAGGGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCA</genome_strand>
        <mrna_strand>ATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTG........................................................................................................................................GGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTC-ACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231990" ref_strand="+" ref_description="SGN-E231990 [cLED-7-A8]">
      <seq>aaaaatataaagtttgtatagcaagatggcttcaacactgttactagttttggtttttgtgcttgatttgattgcttttggacttgctgttgctgctgagcagaggagggctactgcaacgatcaacagagatgcagagtataactactgtgtgtatgagtcagatgttgcaactggcttgggcgtgggttcattcttctttcttttatctagtcagctcctcataatgtttgcaagccgatgtttatgctgtgggagggcactgcgaccaggaaagccccgatcatgggctattgtcttattcatcacctgctgggtcaccttctttattgctgaagtgtgcttactggcggcttccgttaggaatgcctaccacacaaagtataggacttacttggcacaacatcctccatcctgcgaggttttgaggaagggagtctttggtgctggcgctgcttttattgttttcacaggcatcgtctctgaacttttctacgtcagctattccaaggccgatgaaggatccattcctccaagaatggatggtggcataaggatgaatgcgttcatgtgaatccattgagcataaagaggttttggttgtatactctctaagcttttgcacttacttagactgtgatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="89168" stop="85750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88868" g_stop="88754" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88753" i_stop="86716" i_length="2038">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86715" g_stop="86516" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="315" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86515" i_stop="86380" i_length="136">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86379" g_stop="86050" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="645" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E231990" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88868" e_stop="88754"/>
          <exon e_start="86715" e_stop="86516"/>
          <exon e_start="86379" e_stop="86050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACTGTGAGTTCTTTTGCGATAATTCTTCTTCTGTTTTGCTCTTTCCTGTATGTTTTATTGTTATATTCTTCGTTCATCTTTCAGTATCATACTATATACTACTGTATTGGAGTTTTTTTGGTGTGGGTTTGTATGTTTAGGAATCGAAGAAATTATGTAGTAGCTATTTTAGAGGGTAAATAAATTCTCGACCCATAAAATTCTTCGTGTATTATGAACAGTAATTATGGTTTAGAACTAGCCAGGTTGAAGATAGTTGGATTATGCTATAGTATATAGTTTATAGCTTGTTGAGATGATATCCATGGAAGGACCCAGAAGTTGATTTAATGAACTTTTGAATTTTGAACAAGTAGGGTCATGCCCCTCTACTGGCCTACTACATGTGTCTGCTTATTGTTGTCGTCTATCAGATTACAGTCAAATTTCTTTCTAGGGTTTGGCAATATGGGACCTCTATGTATTCTGTTATATTGAGTGGCTTCTCATTTCTCAAATGGTGACTCAACTAGTAATAGTTATTATCTCAGAAAAATGATTTTCTAACTATCTGAGAATCTAATCCTCATTTTATGTAAGTAATGTCTTTTGAGTCTAATTAGAGGTTCTTTGCAAATCAAGGTTTTGTAAATTTTACACTTACCCCTATTCGAACTTAATGTAAGCGTCACAACATCAACAACTTAAGTTTAATCTGACCAGTGTTGGTAAATTGGATCCGTGCTTCCATTATGTATTATGTTTGCTAAGGCCTAAGTTCACATTGATACCTACAAATTCCTCCATCTGTTCATAGATCTACCTTGTTCGCTTTTATTACCATCTATCGCCATAGTGTCACATCTACAGATTAGTTTACATATGCTGAAGCTTGTCGTGATATCAGGTCAATTTTGTTACCTGAATAAAGGACTTGGTGACTTAGATGCTTTTAGTTATGTCAATCAAATATTAAGTTAGAAGCATTATTTTCCCATTCTCATTGTTATATAAGCACGTGAATAGATTTGCAAGTCTGACCTGAGATAATTCCCTATCCAACTTCTTGGGTGTGGATAAACTTGGAAGGAGTGCTAGTTATATCCTTTATTCAGTTGATTTAAAAAGGTTGTTTCGATGCTTTGATATTCCGCAAGTAACTTGATGCTCTTTTAAGATTTGGATAATCAAATTAGAAAAGTAACTTGTTCAGTCACATCGCCATATAAACAAGTGAGTGGATTAGAAAGTGTGGCCAGAGATCTCAAGTACATGTGGACCTTCCCTTTCAAGATACTATGCATCAACTTCATCCATGGTATTATTACATCTTGCTTGGTGTTCTCTCTTCTTCCCTTGAATCTCCGTGCGTGTGGTTGGAAGGTGAGGTGATTATAATCTTTTGTTAGGTCTGTATTAAATCAACCCCAATATGTATGTCTACTCTCTAAGAGAGTTAACCAATGTTGATGTCCTTGATCAAATGCAAGTGGAGTAGAAGTTGTCCGAGCATGTGAGTCTTTACGTGATCTGATGTGATAAGAGTTCTCATTGACTTTTTGAGGTTAGCAGACAGGAACCGATCATGACAGACTAGTTCTGCAAGAACAGCGAAGTTACCAAGTAACACGTACATATTCAAAATGGACATGGTTCATAGCTTACATGCAGGGACGGTTATAGTCGTTGTAGGAGCCAACTTAGATGGTGGCCTAAGGGGAAATGTGAGATTTCAGAGCAGTTAGAAGAAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGTGTTTTAGTTTAATATTATAACAGCATTTCTGACTTAGCTATTTTTGCTATAAGGTTGATGTTTCTATACTTGACAATGTTTAGTACTAATAATATACAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGGGTTTTAGTTTAAAATTATAAAAGCATTTCTGACTTAGCTATTTTTTGCTATAAGGTTGATGTTTCTATACTTGACAACATTTAGTATTAATAATATACATTTTCAGTAAGTTTAATTTTTGGGTTCTTTATTTCAGGCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTGGTATGTTTCTCTGTAAACATGGTTCATGAACTACATTTTAGTGTTTGCTAGCCAGAGTAGAGACATAATGATTTCACTGATGTATGCAAGAATCTATTCAAATATGAGAGAAACAATTATGTCTTGAATTTTTCAGGGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTG</genome_strand>
        <mrna_strand>AAAAATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTG........................................................................................................................................GGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCATAAAGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377030" ref_strand="+" ref_description="SGN-E377030 [TUS-20-K19]">
      <seq>aaaaatataaagtttgtatagcaagatggcttcaacactgttactagttttggtttttgtgcttgatttgattgcttttggacttgctgttgctgctgagcagaggagggctactgcaacgatcaacagagatgcagagtataactactgtgtgtatgagtcagatgttgcaactggcttgggcgtgggttcattcttctttcttttatctagtcagctcctcataatgtttgcaagccgatgtttatgctgtgggagggcactgcgaccaggaaagccccgatcatgggctattgtcttattcatcacctgctgggtcaccttctttattgctgaagtgtgcttactggcggcttccgttaggaatgcctaccacacaaagtataggacttacttggcacaacatcctccatcctgcgaggttttgaggaagggagtctttggtgctggcgctgcttttattgttttcacaggcatcgtctctgaacttttctacgtcagctattccaaggccgatgaaggatccattcctccaagaatggatggtggcataaggatgaatgcgttcatgtgaatccattgagcagaaggaggttttggttgtatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="89168" stop="85787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88868" g_stop="88754" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88753" i_stop="86716" i_length="2038">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86715" g_stop="86516" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="315" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86515" i_stop="86380" i_length="136">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86379" g_stop="86087" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="608" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E377030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88868" e_stop="88754"/>
          <exon e_start="86715" e_stop="86516"/>
          <exon e_start="86379" e_stop="86087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACTGTGAGTTCTTTTGCGATAATTCTTCTTCTGTTTTGCTCTTTCCTGTATGTTTTATTGTTATATTCTTCGTTCATCTTTCAGTATCATACTATATACTACTGTATTGGAGTTTTTTTGGTGTGGGTTTGTATGTTTAGGAATCGAAGAAATTATGTAGTAGCTATTTTAGAGGGTAAATAAATTCTCGACCCATAAAATTCTTCGTGTATTATGAACAGTAATTATGGTTTAGAACTAGCCAGGTTGAAGATAGTTGGATTATGCTATAGTATATAGTTTATAGCTTGTTGAGATGATATCCATGGAAGGACCCAGAAGTTGATTTAATGAACTTTTGAATTTTGAACAAGTAGGGTCATGCCCCTCTACTGGCCTACTACATGTGTCTGCTTATTGTTGTCGTCTATCAGATTACAGTCAAATTTCTTTCTAGGGTTTGGCAATATGGGACCTCTATGTATTCTGTTATATTGAGTGGCTTCTCATTTCTCAAATGGTGACTCAACTAGTAATAGTTATTATCTCAGAAAAATGATTTTCTAACTATCTGAGAATCTAATCCTCATTTTATGTAAGTAATGTCTTTTGAGTCTAATTAGAGGTTCTTTGCAAATCAAGGTTTTGTAAATTTTACACTTACCCCTATTCGAACTTAATGTAAGCGTCACAACATCAACAACTTAAGTTTAATCTGACCAGTGTTGGTAAATTGGATCCGTGCTTCCATTATGTATTATGTTTGCTAAGGCCTAAGTTCACATTGATACCTACAAATTCCTCCATCTGTTCATAGATCTACCTTGTTCGCTTTTATTACCATCTATCGCCATAGTGTCACATCTACAGATTAGTTTACATATGCTGAAGCTTGTCGTGATATCAGGTCAATTTTGTTACCTGAATAAAGGACTTGGTGACTTAGATGCTTTTAGTTATGTCAATCAAATATTAAGTTAGAAGCATTATTTTCCCATTCTCATTGTTATATAAGCACGTGAATAGATTTGCAAGTCTGACCTGAGATAATTCCCTATCCAACTTCTTGGGTGTGGATAAACTTGGAAGGAGTGCTAGTTATATCCTTTATTCAGTTGATTTAAAAAGGTTGTTTCGATGCTTTGATATTCCGCAAGTAACTTGATGCTCTTTTAAGATTTGGATAATCAAATTAGAAAAGTAACTTGTTCAGTCACATCGCCATATAAACAAGTGAGTGGATTAGAAAGTGTGGCCAGAGATCTCAAGTACATGTGGACCTTCCCTTTCAAGATACTATGCATCAACTTCATCCATGGTATTATTACATCTTGCTTGGTGTTCTCTCTTCTTCCCTTGAATCTCCGTGCGTGTGGTTGGAAGGTGAGGTGATTATAATCTTTTGTTAGGTCTGTATTAAATCAACCCCAATATGTATGTCTACTCTCTAAGAGAGTTAACCAATGTTGATGTCCTTGATCAAATGCAAGTGGAGTAGAAGTTGTCCGAGCATGTGAGTCTTTACGTGATCTGATGTGATAAGAGTTCTCATTGACTTTTTGAGGTTAGCAGACAGGAACCGATCATGACAGACTAGTTCTGCAAGAACAGCGAAGTTACCAAGTAACACGTACATATTCAAAATGGACATGGTTCATAGCTTACATGCAGGGACGGTTATAGTCGTTGTAGGAGCCAACTTAGATGGTGGCCTAAGGGGAAATGTGAGATTTCAGAGCAGTTAGAAGAAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGTGTTTTAGTTTAATATTATAACAGCATTTCTGACTTAGCTATTTTTGCTATAAGGTTGATGTTTCTATACTTGACAATGTTTAGTACTAATAATATACAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGGGTTTTAGTTTAAAATTATAAAAGCATTTCTGACTTAGCTATTTTTTGCTATAAGGTTGATGTTTCTATACTTGACAACATTTAGTATTAATAATATACATTTTCAGTAAGTTTAATTTTTGGGTTCTTTATTTCAGGCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTGGTATGTTTCTCTGTAAACATGGTTCATGAACTACATTTTAGTGTTTGCTAGCCAGAGTAGAGACATAATGATTTCACTGATGTATGCAAGAATCTATTCAAATATGAGAGAAACAATTATGTCTTGAATTTTTCAGGGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATAC</genome_strand>
        <mrna_strand>AAAAATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTG........................................................................................................................................GGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298181" ref_strand="+" ref_description="SGN-E298181 [cLEW-9-C21]">
      <seq>tagcaagatttactttacactgttactagtttcggtttttgtgcttgatttgattgcttttggacttgctgttgctgctgagcagaggagggctactgcaacgatcaacagagatgcagagtataactactgtgtgtatgagtcagatgttgcaactggcttgggcgtgggttcattcttctttcttttatctagtcagctcctaataatgtttgcaagccgatgtttatgctgtgggagggcactgcgaccaggaaagccccgatcatgggctattgtcttattcatcacctgctgggtcaccttctttattgctgaagtgtgcttactggcggcttccgttaggaatgcctaccacacaaagtataggacttacttggcacaacatgctccattctgcgaggatttgaggaaaggagtcttttgtgctggcgctgcttttattgttttcacaggcatcggctctgaacttttgtacgtcagctattccaaggccgatgaaggatccattcctccaagaatggatggtggcataaggatgaatgcgttcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="89150" stop="85822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88850" g_stop="88754" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88753" i_stop="86716" i_length="2038">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86715" g_stop="86516" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="297" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86515" i_stop="86380" i_length="136">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86379" g_stop="86122" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="555" r_length="258" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E298181" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88850" e_stop="88754"/>
          <exon e_start="86715" e_stop="86516"/>
          <exon e_start="86379" e_stop="86122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACTGTGAGTTCTTTTGCGATAATTCTTCTTCTGTTTTGCTCTTTCCTGTATGTTTTATTGTTATATTCTTCGTTCATCTTTCAGTATCATACTATATACTACTGTATTGGAGTTTTTTTGGTGTGGGTTTGTATGTTTAGGAATCGAAGAAATTATGTAGTAGCTATTTTAGAGGGTAAATAAATTCTCGACCCATAAAATTCTTCGTGTATTATGAACAGTAATTATGGTTTAGAACTAGCCAGGTTGAAGATAGTTGGATTATGCTATAGTATATAGTTTATAGCTTGTTGAGATGATATCCATGGAAGGACCCAGAAGTTGATTTAATGAACTTTTGAATTTTGAACAAGTAGGGTCATGCCCCTCTACTGGCCTACTACATGTGTCTGCTTATTGTTGTCGTCTATCAGATTACAGTCAAATTTCTTTCTAGGGTTTGGCAATATGGGACCTCTATGTATTCTGTTATATTGAGTGGCTTCTCATTTCTCAAATGGTGACTCAACTAGTAATAGTTATTATCTCAGAAAAATGATTTTCTAACTATCTGAGAATCTAATCCTCATTTTATGTAAGTAATGTCTTTTGAGTCTAATTAGAGGTTCTTTGCAAATCAAGGTTTTGTAAATTTTACACTTACCCCTATTCGAACTTAATGTAAGCGTCACAACATCAACAACTTAAGTTTAATCTGACCAGTGTTGGTAAATTGGATCCGTGCTTCCATTATGTATTATGTTTGCTAAGGCCTAAGTTCACATTGATACCTACAAATTCCTCCATCTGTTCATAGATCTACCTTGTTCGCTTTTATTACCATCTATCGCCATAGTGTCACATCTACAGATTAGTTTACATATGCTGAAGCTTGTCGTGATATCAGGTCAATTTTGTTACCTGAATAAAGGACTTGGTGACTTAGATGCTTTTAGTTATGTCAATCAAATATTAAGTTAGAAGCATTATTTTCCCATTCTCATTGTTATATAAGCACGTGAATAGATTTGCAAGTCTGACCTGAGATAATTCCCTATCCAACTTCTTGGGTGTGGATAAACTTGGAAGGAGTGCTAGTTATATCCTTTATTCAGTTGATTTAAAAAGGTTGTTTCGATGCTTTGATATTCCGCAAGTAACTTGATGCTCTTTTAAGATTTGGATAATCAAATTAGAAAAGTAACTTGTTCAGTCACATCGCCATATAAACAAGTGAGTGGATTAGAAAGTGTGGCCAGAGATCTCAAGTACATGTGGACCTTCCCTTTCAAGATACTATGCATCAACTTCATCCATGGTATTATTACATCTTGCTTGGTGTTCTCTCTTCTTCCCTTGAATCTCCGTGCGTGTGGTTGGAAGGTGAGGTGATTATAATCTTTTGTTAGGTCTGTATTAAATCAACCCCAATATGTATGTCTACTCTCTAAGAGAGTTAACCAATGTTGATGTCCTTGATCAAATGCAAGTGGAGTAGAAGTTGTCCGAGCATGTGAGTCTTTACGTGATCTGATGTGATAAGAGTTCTCATTGACTTTTTGAGGTTAGCAGACAGGAACCGATCATGACAGACTAGTTCTGCAAGAACAGCGAAGTTACCAAGTAACACGTACATATTCAAAATGGACATGGTTCATAGCTTACATGCAGGGACGGTTATAGTCGTTGTAGGAGCCAACTTAGATGGTGGCCTAAGGGGAAATGTGAGATTTCAGAGCAGTTAGAAGAAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGTGTTTTAGTTTAATATTATAACAGCATTTCTGACTTAGCTATTTTTGCTATAAGGTTGATGTTTCTATACTTGACAATGTTTAGTACTAATAATATACAGTAACTGATAGAAATCAAGATCTGCGCTAATTGCTTAGGGTTTTAGTTTAAAATTATAAAAGCATTTCTGACTTAGCTATTTTTTGCTATAAGGTTGATGTTTCTATACTTGACAACATTTAGTATTAATAATATACATTTTCAGTAAGTTTAATTTTTGGGTTCTTTATTTCAGGCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTGGTATGTTTCTCTGTAAACATGGTTCATGAACTACATTTTAGTGTTTGCTAGCCAGAGTAGAGACATAATGATTTCACTGATGTATGCAAGAATCTATTCAAATATGAGAGAAACAATTATGTCTTGAATTTTTCAGGGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTG</genome_strand>
        <mrna_strand>TAGCAAGATTTACTTTACACTGTTACTAGTTTCGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTAATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTG........................................................................................................................................GGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATGCTCCATTCTGCGAGGATTTGAGGAAAGGAGTCTTTTGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGGCTCTGAACTTTTGTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539471" ref_strand="+" ref_description="SGN-E539471 [TUS-59-D23]">
      <seq>ctcacatgctcggacaacttctactccacttgcatttgatcaaggacatcaacattggttaactctcttagagagtagacatacatattggggttgatttaatacagacctaacaaaagattataatcacctcaccttccaaccacacgcacggagattcaagggaagaagagagaacaccaagcaagatgtaataataccatggatgaagttgatgcatagtatcttgaaagggaaggtccacatgtacttgagatctctggccacactttctaatccactcacttgtttatatggcgatgtgactgaacaagttacttttctaatttgattatccaaatcttaaaagagcatcaagttacttgcggaatatcaaagcatcgaaacaacctttttaaatcaactgaataaaggatataactagcactccttccaagtttatccacacccaagaagttggatagggaattatctcaggtcagacttgcaaatctattcacgtgcttatataacaatgagaatgggaaaataatgcttctaacttaatatttgattgacataactaaaagcatctaagtcaccaagtcctttattcaggtaacaaaattgacctgatatcacgacaagcttcagcatatgtaaactaatctgtagatgtgacactatggcgatagatggtaataaaagcgaacaaggtagatctatgaacagatggaggaatttgtaggtatcaatgtgaacttaggccttagcaaaataatacataatggaagcacggatccaatttaccacactggtcagattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="86960" stop="88368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87260" g_stop="88068" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E539471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87260" e_stop="88068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATGCTCGGACAACTTCTACTCCACTTGCATTTGATCAAGGACATCAACATTGGTTAACTCTCTTAGAGAGTAGACATACATATTGGGGTTGATTTAATACAGACCTAACAAAAGATTATAATCACCTCACCTTCCAACCACACGCACGGAGATTCAAGGGAAGAAGAGAGAACACCAAGCAAGATGTAATAATACCATGGATGAAGTTGATGCATAGTATCTTGAAAGGGAAGGTCCACATGTACTTGAGATCTCTGGCCACACTTTCTAATCCACTCACTTGTTTATATGGCGATGTGACTGAACAAGTTACTTTTCTAATTTGATTATCCAAATCTTAAAAGAGCATCAAGTTACTTGCGGAATATCAAAGCATCGAAACAACCTTTTTAAATCAACTGAATAAAGGATATAACTAGCACTCCTTCCAAGTTTATCCACACCCAAGAAGTTGGATAGGGAATTATCTCAGGTCAGACTTGCAAATCTATTCACGTGCTTATATAACAATGAGAATGGGAAAATAATGCTTCTAACTTAATATTTGATTGACATAACTAAAAGCATCTAAGTCACCAAGTCCTTTATTCAGGTAACAAAATTGACCTGATATCACGACAAGCTTCAGCATATGTAAACTAATCTGTAGATGTGACACTATGGCGATAGATGGTAATAAAAGCGAACAAGGTAGATCTATGAACAGATGGAGGAATTTGTAGGTATCAATGTGAACTTAGGCCTTAGCAAACATAATACATAATGGAAGCACGGATCCAATTTACCAACACTGGTCAGATTAAA</genome_strand>
        <mrna_strand>CTCACATGCTCGGACAACTTCTACTCCACTTGCATTTGATCAAGGACATCAACATTGGTTAACTCTCTTAGAGAGTAGACATACATATTGGGGTTGATTTAATACAGACCTAACAAAAGATTATAATCACCTCACCTTCCAACCACACGCACGGAGATTCAAGGGAAGAAGAGAGAACACCAAGCAAGATGTAATAATACCATGGATGAAGTTGATGCATAGTATCTTGAAAGGGAAGGTCCACATGTACTTGAGATCTCTGGCCACACTTTCTAATCCACTCACTTGTTTATATGGCGATGTGACTGAACAAGTTACTTTTCTAATTTGATTATCCAAATCTTAAAAGAGCATCAAGTTACTTGCGGAATATCAAAGCATCGAAACAACCTTTTTAAATCAACTGAATAAAGGATATAACTAGCACTCCTTCCAAGTTTATCCACACCCAAGAAGTTGGATAGGGAATTATCTCAGGTCAGACTTGCAAATCTATTCACGTGCTTATATAACAATGAGAATGGGAAAATAATGCTTCTAACTTAATATTTGATTGACATAACTAAAAGCATCTAAGTCACCAAGTCCTTTATTCAGGTAACAAAATTGACCTGATATCACGACAAGCTTCAGCATATGTAAACTAATCTGTAGATGTGACACTATGGCGATAGATGGTAATAAAAGCGAACAAGGTAGATCTATGAACAGATGGAGGAATTTGTAGGTATCAATGTGAACTTAGGCCTTAGCAAA-ATAATACATAATGGAAGCACGGATCCAATTTACC-ACACTGGTCAGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282571" ref_strand="+" ref_description="SGN-E282571 [cLER-18-H12]">
      <seq>tcacatgctcggacaacttctactccacttgcatttgatcaaggacatcaacattggttaactctcttagagagtagacatacatattggggttgatttaatacagacctaacaaaagattataatcacctcaccttccaaccacacgcacggagattcaagggaagaagagagaacaccaagcaagatgtaataataccatggatgaagttgatgcatagtatcttgaaagggaaggtccacatgtacttgagatctctggccacactttctaatccactcacttgtttatatggcgatgtgactgaacaagttacttttctaatttgattatccaaatcttaaataagcatctagttacttgcggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="86961" stop="87931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87261" g_stop="87631" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E282571" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87261" e_stop="87631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATGCTCGGACAACTTCTACTCCACTTGCATTTGATCAAGGACATCAACATTGGTTAACTCTCTTAGAGAGTAGACATACATATTGGGGTTGATTTAATACAGACCTAACAAAAGATTATAATCACCTCACCTTCCAACCACACGCACGGAGATTCAAGGGAAGAAGAGAGAACACCAAGCAAGATGTAATAATACCATGGATGAAGTTGATGCATAGTATCTTGAAAGGGAAGGTCCACATGTACTTGAGATCTCTGGCCACACTTTCTAATCCACTCACTTGTTTATATGGCGATGTGACTGAACAAGTTACTTTTCTAATTTGATTATCCAAATCTTAAAAGAGCATCAAGTTACTTGCGGAATA</genome_strand>
        <mrna_strand>TCACATGCTCGGACAACTTCTACTCCACTTGCATTTGATCAAGGACATCAACATTGGTTAACTCTCTTAGAGAGTAGACATACATATTGGGGTTGATTTAATACAGACCTAACAAAAGATTATAATCACCTCACCTTCCAACCACACGCACGGAGATTCAAGGGAAGAAGAGAGAACACCAAGCAAGATGTAATAATACCATGGATGAAGTTGATGCATAGTATCTTGAAAGGGAAGGTCCACATGTACTTGAGATCTCTGGCCACACTTTCTAATCCACTCACTTGTTTATATGGCGATGTGACTGAACAAGTTACTTTTCTAATTTGATTATCCAAATCTTAAATAAGCATCTAGTTACTTGCGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707803" ref_strand="+" ref_description="SGN-E707803 [FA34AB01]">
      <seq>cctttgtttgccaccgtcgtatggcgaagatgatagaggtggtaatgctctcccctcaagaggactatcatctgaacatttggagttgcagagaaatgatagattgccttctggagttactagtggaacactagaagcgatccgcgaaagaatgaaaagtatttcattagctactaccgtggggaatgcggacccaagtaatagaccactgatgtccatgaatggtaacatcagtcacgtggtgtcaaatcacggtcctggcactgaacattctagtgttgaaaataccattcagagtggggttcttcccatggatgagaaggcactttcagggctccaggcacgaatggagaggctgaagagtggatctatggaattctaggtattttttggaggcatttcccagtgaacttgcattataagatgctttgtgtttgccgagaaacaccttgaacatttatattgcagtcgtcagctcatgtctgattacaagtggaaagaaaggaaagttcgtcaagtgttgcctgccatctcaattttatgggacagaatctttgtgttcttgagatctcgtagataatgtaccataatggtttttttccggcagggttagctgtatatttttgtagagatatctactgatttgatttggtctaatttaattgagaggctctcgtgtgtttcgaaatcgtatgtcatgcctcaattgatagctagattccggctagatagttgaaactgttgtaagctgtatgatagctcttcaatgttgaaatcttcctattttcacgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="90966" stop="89457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90666" g_stop="90551" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90550" i_stop="90434" i_length="117">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90433" g_stop="89760" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="790" r_length="674" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="794" polyA_stop="807"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E707803" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90666" e_stop="90551"/>
          <exon e_start="90433" e_stop="89760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGTTTGCCACCGTCGTATGGCGAAGATGATAGAGGTGGTAATGCTCTCCCCTCAAGAGGACTATCATCTGAACATTTGGAGTTGCAGAGAAATGATAGATTGCCTTCTGGAGGTACACATGTGCCAGGCTATTTCTATTTTAGCCTTTGTGTTTTTCTTTCTTTTTTCATCTTTGATATATTAACTGTTCACTTCAAACGTCAGTTACAAAATAGTTTTTTTGATGCAGTTACTAGTGGAACACTAGAAGCGATCCGCGAAAGAATGAAAAGTATTTCATTAGCTACTACCGTGGGGAATGCGGACCCAAGTAATAGACCACTGATGTCCATGAATGGTAACATCAGTCACGTGGTGTCAAATCACGGTCCTGGCACTGAACATTCTAGTGTTGAAAATACCATTCAGAGTGGGGTTCTTCCCATGGATGAGAAGGCACTTTCAGGGCTCCAGGCACGAATGGAGAGGCTGAAGAGTGGATCTATGGAATTCTAGGTATTTTTTGGAGGCATTTCCCAGTGAACTTGCATTATAAGATGCTTTGTGTTTGCCGAGAAACACCTTGAACATTTATATTGCAGTCGTCAGCTCATGTCTGATTACAAGTGGAAAGAAAGGAAAGTTCGTCAAGTGTTGCCTGCCATCTCAATTTTATGGGACAGAATCTTTGTGTTCTTGAGATCTCGTAGATAATGTACCATAATGGTTTTTTTCCGGCAGGGTTAGCTGTATATTTTTGTAGAGATATCTACTGATTTGATTTGGTCTAATTTAATTGAGAGGCTCTCGTGTGTTTCGAAATCGTATGTCATGCCTCAATTGATAGCTAGATTCCGGCTAGATAGTTGAAACTGTTGTAAGCTGTATGATAGCTCTTCAATGTTGAAATCTTCCTATTTTCAC</genome_strand>
        <mrna_strand>CCTTTGTTTGCCACCGTCGTATGGCGAAGATGATAGAGGTGGTAATGCTCTCCCCTCAAGAGGACTATCATCTGAACATTTGGAGTTGCAGAGAAATGATAGATTGCCTTCTGGAG.....................................................................................................................TTACTAGTGGAACACTAGAAGCGATCCGCGAAAGAATGAAAAGTATTTCATTAGCTACTACCGTGGGGAATGCGGACCCAAGTAATAGACCACTGATGTCCATGAATGGTAACATCAGTCACGTGGTGTCAAATCACGGTCCTGGCACTGAACATTCTAGTGTTGAAAATACCATTCAGAGTGGGGTTCTTCCCATGGATGAGAAGGCACTTTCAGGGCTCCAGGCACGAATGGAGAGGCTGAAGAGTGGATCTATGGAATTCTAGGTATTTTTTGGAGGCATTTCCCAGTGAACTTGCATTATAAGATGCTTTGTGTTTGCCGAGAAACACCTTGAACATTTATATTGCAGTCGTCAGCTCATGTCTGATTACAAGTGGAAAGAAAGGAAAGTTCGTCAAGTGTTGCCTGCCATCTCAATTTTATGGGACAGAATCTTTGTGTTCTTGAGATCTCGTAGATAATGTACCATAATGGTTTTTTTCCGGCAGGGTTAGCTGTATATTTTTGTAGAGATATCTACTGATTTGATTTGGTCTAATTTAATTGAGAGGCTCTCGTGTGTTTCGAAATCGTATGTCATGCCTCAATTGATAGCTAGATTCCGGCTAGATAGTTGAAACTGTTGTAAGCTGTATGATAGCTCTTCAATGTTGAAATCTTCCTATTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707297" ref_strand="+" ref_description="SGN-E707297 [FA32CD10]">
      <seq>cataggttcttcaaagcaccatatatgatgttgaccttgatcgcatccttcagagtattcacatttacctgcaagaattaggaatggaagagatcaggaggagagcgggagccgatgataaacctttaagaatggtgaaaactgtgctgcatgaacttgtcaagcttcgtggtactgccataaaaggtcatctgtccatggtgccaatcgacatgcaaccacctccaattattcttgcctacattgatcttaaccttcagaccttggccgctgcaaggatgttgactccgtctgtacctggccaaactcactggggtgattctgcagcaaataatccagcaccagcaacacataatgcagatgctcagttgaagcaggaacttgctgccatatttaagaagattggtgacaagcaaacctgcacaattggtctttatgagttataccggatcacacaattgtatcccaaggttgatatatttgctcagctgcaaaatgctagtgaggcattccgaacatatattagagatggtctagcccagatggaaaagaatgctgcggctggaaggactccttctagtgtacccatgccaactcctcctccgtcttcactaaacctgtcttctcccaaatttggtcctttatctcctgtaaataccaacccattgaatgatgcaaaatctgtaaacaataaaattgaaccatcacactttagtttgccaccgtcgtatggcgaagatgatagaggtggtaatgctctcccctcaagaggactatcatctgaacatttggagttgcagagaaatgatagattgccttctggagttactagtggaacactagaagcgatccgcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="92161" stop="90102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91862" g_stop="91760" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91759" i_stop="91656" i_length="104">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91655" g_stop="91499" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="260" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91498" i_stop="91415" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91414" g_stop="91301" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="374" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91300" i_stop="91176" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91175" g_stop="91080" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="470" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91079" i_stop="90988" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90987" g_stop="90916" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="542" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90915" i_stop="90834" i_length="82">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90833" g_stop="90551" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="825" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90550" i_stop="90434" i_length="117">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90433" g_stop="90402" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="857" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E707297" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91862" e_stop="91760"/>
          <exon e_start="91655" e_stop="91499"/>
          <exon e_start="91414" e_stop="91301"/>
          <exon e_start="91175" e_stop="91080"/>
          <exon e_start="90987" e_stop="90916"/>
          <exon e_start="90833" e_stop="90551"/>
          <exon e_start="90433" e_stop="90402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGGTTCTTCAAAGCACCATATATGATGTTGACCTTGATCGCATCCTTCAGAGTATTCACATTTACCTGCAAGAATTAGGAATGGAAGAGATCAGGAGGAGGTAGCTTTCAATTAGATTTGAGATTTTTCTTCTTTGGGTATGCACTTTAACATGGATTAATCAGCTATTTTCTTTCCTAATTCTTGTCTTATAAATACTGAAAGAGCGGGAGCCGATGATAAACCTTTAAGAATGGTGAAAACTGTGCTGCATGAACTTGTCAAGCTTCGTGGTACTGCCATAAAAGGTCATCTGTCCATGGTGCCAATCGACATGCAACCACCTCCAATTATTCTTGCCTACATTGATCTTAACCTTCAGGTTATGCAACTTTTAACTGCCATGTTGCTTTTTCTGCGCTAGTAATTCATGTGGAGTTCCCAATTGATGTTAATAATCTTTCAGACCTTGGCCGCTGCAAGGATGTTGACTCCGTCTGTACCTGGCCAAACTCACTGGGGTGATTCTGCAGCAAATAATCCAGCACCAGCAACACATAATGCAGATGCTCAGTTGAAGGTATAATGTGTGGCCTTTCTTTTCTAGCTTGTTTTTTCTTTCAAAAGTGAACTTTCCGTTGCAATATAATTTTGTTGCATCTTACTTGTGAATAACAATGTAGTGTTATGTTGTGTGTTTTACAGCAGGAACTTGCTGCCATATTTAAGAAGATTGGTGACAAGCAAACCTGCACAATTGGTCTTTATGAGTTATACCGGATCACACAATTGTATCCCAAGGTACAATGCTTTATCCTTTTTAGTGTCAACTTATTTCCTTGCCTTCAAAACTGAACTTCTTCTTGTAACACATTTTGTCCAATCTGTATTAGGTTGATATATTTGCTCAGCTGCAAAATGCTAGTGAGGCATTCCGAACATATATTAGAGATGGTCTAGCCCAGGTGTGCATTGGACCTCTGTGTACGACACATTTATAGATTTGTAGTCACTAGTCATGGAATAACTGTTCGCATGAAATTGCAGATGGAAAAGAATGCTGCGGCTGGAAGGACTCCTTCTAGTGTACCCATGCCAACTCCTCCTCCGTCTTCACTAAACCTGTCTTCTCCCAAATTTGGTCCTTTATCTCCTGTAAATACCAACCCATTGAATGATGCAAAATCTGTAAACAATAAAATTGAACCATCACACTTTAGTTTGCCACCGTCGTATGGCGAAGATGATAGAGGTGGTAATGCTCTCCCCTCAAGAGGACTATCATCTGAACATTTGGAGTTGCAGAGAAATGATAGATTGCCTTCTGGAGGTACACATGTGCCAGGCTATTTCTATTTTAGCCTTTGTGTTTTTCTTTCTTTTTTCATCTTTGATATATTAACTGTTCACTTCAAACGTCAGTTACAAAATAGTTTTTTTGATGCAGTTACTAGTGGAACACTAGAAGCGATCCGCGAA</genome_strand>
        <mrna_strand>CATAGGTTCTTCAAAGCACCATATATGATGTTGACCTTGATCGCATCCTTCAGAGTATTCACATTTACCTGCAAGAATTAGGAATGGAAGAGATCAGGAGGAG........................................................................................................AGCGGGAGCCGATGATAAACCTTTAAGAATGGTGAAAACTGTGCTGCATGAACTTGTCAAGCTTCGTGGTACTGCCATAAAAGGTCATCTGTCCATGGTGCCAATCGACATGCAACCACCTCCAATTATTCTTGCCTACATTGATCTTAACCTTCAG....................................................................................ACCTTGGCCGCTGCAAGGATGTTGACTCCGTCTGTACCTGGCCAAACTCACTGGGGTGATTCTGCAGCAAATAATCCAGCACCAGCAACACATAATGCAGATGCTCAGTTGAAG.............................................................................................................................CAGGAACTTGCTGCCATATTTAAGAAGATTGGTGACAAGCAAACCTGCACAATTGGTCTTTATGAGTTATACCGGATCACACAATTGTATCCCAAG............................................................................................GTTGATATATTTGCTCAGCTGCAAAATGCTAGTGAGGCATTCCGAACATATATTAGAGATGGTCTAGCCCAG..................................................................................ATGGAAAAGAATGCTGCGGCTGGAAGGACTCCTTCTAGTGTACCCATGCCAACTCCTCCTCCGTCTTCACTAAACCTGTCTTCTCCCAAATTTGGTCCTTTATCTCCTGTAAATACCAACCCATTGAATGATGCAAAATCTGTAAACAATAAAATTGAACCATCACACTTTAGTTTGCCACCGTCGTATGGCGAAGATGATAGAGGTGGTAATGCTCTCCCCTCAAGAGGACTATCATCTGAACATTTGGAGTTGCAGAGAAATGATAGATTGCCTTCTGGAG.....................................................................................................................TTACTAGTGGAACACTAGAAGCGATCCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336854" ref_strand="+" ref_description="SGN-E336854 [cTOE-5-K15]">
      <seq>ctagggctgctttaaggcgttcagtgagggataacgggactgatctggcagagccgagcggtgaagtttcacggtcgacagctggcccaatcttaaatagggatatatataacaatacagagcttcccatggaaagaaatgtgaatctacggccagttgccggtacaattggtccatcagactggaatgaagctcttgatattatatcatatgattctcccgagcagtctgttgaaggaatgaaagttgtgtgccatttgttggccctagcaaccaatgatcctgaaggcagtgccatggatgaaattgtcaaagatgcagataggcttgtttcctgcttagcaaataaggtagcaaaaacttttgacttcagtctgatgggtgcatcttcaagatcttgcaaatatgttcttaacacactcatgcagacatttcagaataaaacgctttctcatgctgtaaaggagcgtaccctagatatcctcattactgaacttttgctttggcttcttgatgagagagtaccccgcatggatgatggcagtcagctcttgaaagcgttgaatgttctgatgctaaaaatcttggacaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="94647" stop="92058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94347" g_stop="94311" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94310" i_stop="93942" i_length="369">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93941" g_stop="93879" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="100" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93878" i_stop="93789" i_length="90">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93788" g_stop="93662" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="227" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93661" i_stop="92948" i_length="714">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92947" g_stop="92825" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="350" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92824" i_stop="92739" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92738" g_stop="92661" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="428" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92660" i_stop="92521" i_length="140">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92520" g_stop="92362" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="587" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92361" i_stop="92263" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92262" g_stop="92254" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="596" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E336854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94347" e_stop="94311"/>
          <exon e_start="93941" e_stop="93879"/>
          <exon e_start="93788" e_stop="93662"/>
          <exon e_start="92947" e_stop="92825"/>
          <exon e_start="92738" e_stop="92661"/>
          <exon e_start="92520" e_stop="92362"/>
          <exon e_start="92262" e_stop="92254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGGCTGCTTTAAGGCGTTCAGTGAGGGATAACGGGTATGTGTTTATTTGCTTATACTTGGATCGTCCTGTTCTTAGGATGTAGAAATTTTCAACTAGGCAAGAAACATCTTTTGTAGCGTATTGAGTTACCACTTCCCCTGGGATTGTAAATCCAACCTATAGGTTAGTCAGCTGTCCAGGACCTGGATTATAATTATATTATACTTTGCTGTCTAACTTACAAGTGGACGGTCTTCGTTTGAGTTCTAATTTGTCTTTACATTTGGTTTCAATGAAAAAAATATATTCAAAGGTAGAATACCACATATATTTGTGCTGTCGTTCTGTGTTTTGAACACTGGTTGAGCTCAAATTTTATGTTACTTTCGTCGTTGACACTGGATATTTTTGGTTGATCTTTAGGACTGATCTGGCAGAGCCGAGCGGTGAAGTTTCACGGTCGACAGCTGGCCCAATCTTAAATAGGTGACCTAGAGATCCTTGCATTTTTTTCTCCTACCAAACTGAATATGAGTTGCTAATTTATTTCTTTGTATGTTTATCTCTTCTTTCCAGGGATATATATAACAATACAGAGCTTCCCATGGAAAGAAATGTGAATCTACGGCCAGTTGCCGGTACAATTGGTCCATCAGACTGGAATGAAGCTCTTGATATTATATCATATGATTCTCCCGAGCAGGTTGTTTCCCATTTTCCTTTTCATGGATTAGGATTTACTCTCATCTTAATCCCTTGTCATACCCCGTGTTTATAGCAATGAAGGATTATATAAGCTTAAGTACTTCATACAAGTTCCATAAGTGGTATTCCACTCTTCCCCATCCTCTCCGGCACACCCATAGCTCCTGTCTCCACCCCCACCTTTAGTGTTTCCAGATTATCTGTTAATAACTTTGAAACAATATTTTCTGCTTACTTACTGAACACCAGAAAAAAAAGTAAGAAATCCATTTAGTTCCAAGAAAACATTTTCCACTGCGATGTTTTTCACACCCTGAACTATATTGGGTGATCCAAATGATTGCCAAAAAGTTAACACGATCCACAATGTTTGTGTTTTTGCTTAAGAATATGAATGGTTTTTGTCCCCATTGAAATATAGAATTTGGATCCCTAATTAGACTACTGGAGTTTTTTCTTTCTTCTTTGATTTTGGGGATAAATTTTCATTGCTAAATTTGTTACGAGTTTATCAAAAAAATGCATAAGTTGTCTAAATTTAGAACAACGTATGTTGCACAATTTTTCATAGCTGGTTATGGGTTCATCTTTGTGTTTGTATGTGTGTCTATGTCTTGGTTTTTCTGCTTCTATGGATATTAAAGAGATTAAAGAGGATGGAGGGTAACTGTCAATGATTCACTGATGCCATCATTTCTTTCGCTTGTTGCAGTCTGTTGAAGGAATGAAAGTTGTGTGCCATTTGTTGGCCCTAGCAACCAATGATCCTGAAGGCAGTGCCATGGATGAAATTGTCAAAGATGCAGATAGGCTTGTTTCCTGCTTAGCAAATAAGGTGCGATATGATTCATCTTTTGTTTAACTAACTCGTTGTTGTCTGTGTATATGCTTCAAAATGCTGATCTTCTAGATTTACTACAGGTAGCAAAAACTTTTGACTTCAGTCTGATGGGTGCATCTTCAAGATCTTGCAAATATGTTCTTAACACACTCATGCAGGCATGTGTTTATCCAATTTCTATTAATTCTGCAACAACTTTATTGTTTCCTTGTATATGTGATCATCAAGTATTTGTAAAATTGTTGGTCTCTCACGTATTTGGAAATATCTCAATTTCTGGCTGTTTCCTTGTTTGCAGACATTTCAGAATAAAACGCTTTCTCATGCTGTAAAGGAGCGTACCCTAGATATCCTCATTACTGAACTTTTGCTTTGGCTTCTTGATGAGAGAGTACCCCGCATGGATGATGGCAGTCAGCTCTTGAAAGCGTTGAATGTTCTGATGCTAAAAATCTTGGTACTTCTGCTTCTGATATTGCATTAAAGATTGCAGTTTATGTTTATTTTAGCTAGCTTGTCCTGATTTTGTTCTATCTATTTTTGGTCACTAATATAGGACAATGCT</genome_strand>
        <mrna_strand>CTAGGGCTGCTTTAAGGCGTTCAGTGAGGGATAACGG.................................................................................................................................................................................................................................................................................................................................................................................GACTGATCTGGCAGAGCCGAGCGGTGAAGTTTCACGGTCGACAGCTGGCCCAATCTTAAATAG..........................................................................................GGATATATATAACAATACAGAGCTTCCCATGGAAAGAAATGTGAATCTACGGCCAGTTGCCGGTACAATTGGTCCATCAGACTGGAATGAAGCTCTTGATATTATATCATATGATTCTCCCGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTGAAGGAATGAAAGTTGTGTGCCATTTGTTGGCCCTAGCAACCAATGATCCTGAAGGCAGTGCCATGGATGAAATTGTCAAAGATGCAGATAGGCTTGTTTCCTGCTTAGCAAATAAG......................................................................................GTAGCAAAAACTTTTGACTTCAGTCTGATGGGTGCATCTTCAAGATCTTGCAAATATGTTCTTAACACACTCATGCAG............................................................................................................................................ACATTTCAGAATAAAACGCTTTCTCATGCTGTAAAGGAGCGTACCCTAGATATCCTCATTACTGAACTTTTGCTTTGGCTTCTTGATGAGAGAGTACCCCGCATGGATGATGGCAGTCAGCTCTTGAAAGCGTTGAATGTTCTGATGCTAAAAATCTTG...................................................................................................GACAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541781" ref_strand="+" ref_description="SGN-E541781 [TUS-62-L24]">
      <seq>atgtcttccattctatttcccactaccaatactctctcttcttcaactaccaacactttttccaacttgcattcttctcctttctttgcaaaaacatcaaaaatttcctccattagaaagcataatgtccatcgtaatttccaggtatcttgcaaaaccatagatgataataatcacgaacacaactcacccgtcgacatttctaaaaagaacgattcttcaaacaatatgatcgatagaagaaacgttctacttggattaggaggtttatatggtgcttctactcttgttggtggtcttcccttcgtccttgccgctccggtgaacggacccgacgttaccaaatgtggggccgcagacttgccaccaggtgcagaactggttaattgttgtcctccgatgagcggaagtatcatcgacttccagcttccgtcgtcatccaccccactccgtacacggccagcagctcattccgtggatagtgcctacattgagaaattcaacagagctattcagctgatgaagcaacttcctgacgacgatccacgtagcttcaaacaacaagcaaatattcactgtgcttattgtgatggtgcttatgatcaattanggttcccaaattcagagctccaagttcattcctcttggattttttctccatttcatcgttgttatctctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="128471" stop="130376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128771" g_stop="129140" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129141" i_stop="129763" i_length="623">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129764" g_stop="130076" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="683" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E541781" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128771" e_stop="129140"/>
          <exon e_start="129764" e_stop="130076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTCCATTCTATTTCCCACTACCAATACTCTCTCTTCTTCAACTACCAACACTTTTTCCAACTTGCATTCTTCTCCTTTCTTTGCAAAAACATCAAAAATTTCCTCCATTAGAAAGCATAATGTCCATCGTAATTTCCAGGTATCTTGCAAAACCATAGATGATAATAATCACGAACACAACTCACCCGTCGACATTTCTAAAAAGAACGATTCTTCAAACAATATGATCGATAGAAGAAACGTTCTACTTGGATTAGGAGGTTTATATGGTGCTTCTACTCTTGTTGGTGGTCTTCCCTTCGTCCTTGCCGCTCCGGTGAACGGACCCGACGTTACCAAATGTGGGGCCGCAGACTTGCCACCAGGTACGCTATCGTTATATAGTTTGTAATATATATATATACACGATTGTCCCACACATTGATCAATAGAAAAATAGTGATTTTAAAAGTTAAACGAATATAATGTTTATTCATGAAATAAGTAGGTTTATTTCAACTTCGTGAATAAATTAGTCTTTCTATGAGAAGTCATACCTGATAAAGTAGTTTCTTAAAAGGGAAAAAAGACGAAAATATTCTCAAACTATTGTAAATGGTATGCAGATATCATTCGTCATACTTTTGATATATTGGTGCTACTGTCATCTATAAACTAGAGTTTATATGCCCTTCACTCTAACGTAAGATTAAATAGGGACACGTAACGCAATCTTATTCATCGATCCGATGTCGGATCGGTGGATAAGATTATGACACGTGTATGTCCATTAGTATAAAACGTATATATGTTCTAATTTTTGGACGATAGGGGCACTAATTTCCTTAAAATATGATGACGGAGGTATTTGCATATCATTTACGATAGTTTGAAATATATTTATCCTTTTTTTAAAAAAAAATAAAATTATACTATAGGGACAATATCTCTTTAAGAAAAGTTATTTTGAGACAGCCTTAAAGTCATTTCTTGTCGATTGTTTTAACAGGTGCAGAACTGGTTAATTGTTGTCCTCCGATGAGCGGAAGTATCATCGACTTCCAGCTTCCGTCGTCATCCACCCCACTCCGTACACGGCCAGCAGCTCATTCCGTGGATAGTGCCTACATTGAGAAATTCAACAGAGCTATTCAGCTGATGAAGCAACTTCCTGACGACGATCCACGTAGCTTCAAACAACAAGCAAATATTCACTGTGCTTATTGTGATGGTGCTTATGATCAATTAGGGTTCCCAAATTCAGAGCTCCAAGTTCATTCCTCTTGGATTTTTCTTCCATTTCATCGTTGTTATCTCTATTT</genome_strand>
        <mrna_strand>ATGTCTTCCATTCTATTTCCCACTACCAATACTCTCTCTTCTTCAACTACCAACACTTTTTCCAACTTGCATTCTTCTCCTTTCTTTGCAAAAACATCAAAAATTTCCTCCATTAGAAAGCATAATGTCCATCGTAATTTCCAGGTATCTTGCAAAACCATAGATGATAATAATCACGAACACAACTCACCCGTCGACATTTCTAAAAAGAACGATTCTTCAAACAATATGATCGATAGAAGAAACGTTCTACTTGGATTAGGAGGTTTATATGGTGCTTCTACTCTTGTTGGTGGTCTTCCCTTCGTCCTTGCCGCTCCGGTGAACGGACCCGACGTTACCAAATGTGGGGCCGCAGACTTGCCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAACTGGTTAATTGTTGTCCTCCGATGAGCGGAAGTATCATCGACTTCCAGCTTCCGTCGTCATCCACCCCACTCCGTACACGGCCAGCAGCTCATTCCGTGGATAGTGCCTACATTGAGAAATTCAACAGAGCTATTCAGCTGATGAAGCAACTTCCTGACGACGATCCACGTAGCTTCAAACAACAAGCAAATATTCACTGTGCTTATTGTGATGGTGCTTATGATCAATTANGGTTCCCAAATTCAGAGCTCCAAGTTCATTCCTCTTGGATTTTTTCTCCATTTCATCGTTGTTATCTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299663" ref_strand="+" ref_description="SGN-E299663 [cLEW-1-K13]">
      <seq>tgtcttccattctatttcccactaccaatactctctcttcttcaactaccaacactttttccaacttgcattcttctcctttctttgcaaaaacatcaaaaatttcctccattagaaagcataatgtccatcgtaatttccaggtatcttgcaaaaccatagatgataataatcacgaacacaactcacccgtcgacatttctaaaaagaacgattcttcaaacaatatgatcgatagaagaaacgttctacttggattaggaggtttatatggtgcttctactcttgttggtggtcttcccttcgtccttgccgctccggtgaacggacccgacgttaccaaatgtggggccgcagacttgccaccaggtgcagaactggttaattgttgtcctccgatgagcggaagtatcatcgacttccagcttccgtcgtcatccaccccactccgtacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="128472" stop="130151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128772" g_stop="129140" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129141" i_stop="129763" i_length="623">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129764" g_stop="129851" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="457" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E299663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128772" e_stop="129140"/>
          <exon e_start="129764" e_stop="129851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTCCATTCTATTTCCCACTACCAATACTCTCTCTTCTTCAACTACCAACACTTTTTCCAACTTGCATTCTTCTCCTTTCTTTGCAAAAACATCAAAAATTTCCTCCATTAGAAAGCATAATGTCCATCGTAATTTCCAGGTATCTTGCAAAACCATAGATGATAATAATCACGAACACAACTCACCCGTCGACATTTCTAAAAAGAACGATTCTTCAAACAATATGATCGATAGAAGAAACGTTCTACTTGGATTAGGAGGTTTATATGGTGCTTCTACTCTTGTTGGTGGTCTTCCCTTCGTCCTTGCCGCTCCGGTGAACGGACCCGACGTTACCAAATGTGGGGCCGCAGACTTGCCACCAGGTACGCTATCGTTATATAGTTTGTAATATATATATATACACGATTGTCCCACACATTGATCAATAGAAAAATAGTGATTTTAAAAGTTAAACGAATATAATGTTTATTCATGAAATAAGTAGGTTTATTTCAACTTCGTGAATAAATTAGTCTTTCTATGAGAAGTCATACCTGATAAAGTAGTTTCTTAAAAGGGAAAAAAGACGAAAATATTCTCAAACTATTGTAAATGGTATGCAGATATCATTCGTCATACTTTTGATATATTGGTGCTACTGTCATCTATAAACTAGAGTTTATATGCCCTTCACTCTAACGTAAGATTAAATAGGGACACGTAACGCAATCTTATTCATCGATCCGATGTCGGATCGGTGGATAAGATTATGACACGTGTATGTCCATTAGTATAAAACGTATATATGTTCTAATTTTTGGACGATAGGGGCACTAATTTCCTTAAAATATGATGACGGAGGTATTTGCATATCATTTACGATAGTTTGAAATATATTTATCCTTTTTTTAAAAAAAAATAAAATTATACTATAGGGACAATATCTCTTTAAGAAAAGTTATTTTGAGACAGCCTTAAAGTCATTTCTTGTCGATTGTTTTAACAGGTGCAGAACTGGTTAATTGTTGTCCTCCGATGAGCGGAAGTATCATCGACTTCCAGCTTCCGTCGTCATCCACCCCACTCCGTACACG</genome_strand>
        <mrna_strand>TGTCTTCCATTCTATTTCCCACTACCAATACTCTCTCTTCTTCAACTACCAACACTTTTTCCAACTTGCATTCTTCTCCTTTCTTTGCAAAAACATCAAAAATTTCCTCCATTAGAAAGCATAATGTCCATCGTAATTTCCAGGTATCTTGCAAAACCATAGATGATAATAATCACGAACACAACTCACCCGTCGACATTTCTAAAAAGAACGATTCTTCAAACAATATGATCGATAGAAGAAACGTTCTACTTGGATTAGGAGGTTTATATGGTGCTTCTACTCTTGTTGGTGGTCTTCCCTTCGTCCTTGCCGCTCCGGTGAACGGACCCGACGTTACCAAATGTGGGGCCGCAGACTTGCCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAACTGGTTAATTGTTGTCCTCCGATGAGCGGAAGTATCATCGACTTCCAGCTTCCGTCGTCATCCACCCCACTCCGTACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302938" ref_strand="+" ref_description="SGN-E302938 [cLEW-26-F11]">
      <seq>tctcttcttcaactaccaacactttttccaacttgcattcttctcctttctttgcaaaaacatcaaaaatttcctccattagaaagcataatgtccatcgtaatttccaggtatcttgcaaaaccatagatgataataatcacgaacacaactcacccgtcgacatttctaaaaagaacgattcttcaaacaatatgatcgatagaagaaacgttctacttggattaggaggtttatatggtgcttctactcttgttggtggtcttcccttcgtccttgccgctccggtgaacggacccgacgttaccaaatgtggggccgcagacttgccaccaggtgcagaactggttaattgttgtcctccgatgagcggaagtatcatcgacttccagcttccgtcgtcatccaccccactccgtacacggccagcagctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="128505" stop="130164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128805" g_stop="129140" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129141" i_stop="129763" i_length="623">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129764" g_stop="129864" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="437" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E302938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128805" e_stop="129140"/>
          <exon e_start="129764" e_stop="129864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTTCAACTACCAACACTTTTTCCAACTTGCATTCTTCTCCTTTCTTTGCAAAAACATCAAAAATTTCCTCCATTAGAAAGCATAATGTCCATCGTAATTTCCAGGTATCTTGCAAAACCATAGATGATAATAATCACGAACACAACTCACCCGTCGACATTTCTAAAAAGAACGATTCTTCAAACAATATGATCGATAGAAGAAACGTTCTACTTGGATTAGGAGGTTTATATGGTGCTTCTACTCTTGTTGGTGGTCTTCCCTTCGTCCTTGCCGCTCCGGTGAACGGACCCGACGTTACCAAATGTGGGGCCGCAGACTTGCCACCAGGTACGCTATCGTTATATAGTTTGTAATATATATATATACACGATTGTCCCACACATTGATCAATAGAAAAATAGTGATTTTAAAAGTTAAACGAATATAATGTTTATTCATGAAATAAGTAGGTTTATTTCAACTTCGTGAATAAATTAGTCTTTCTATGAGAAGTCATACCTGATAAAGTAGTTTCTTAAAAGGGAAAAAAGACGAAAATATTCTCAAACTATTGTAAATGGTATGCAGATATCATTCGTCATACTTTTGATATATTGGTGCTACTGTCATCTATAAACTAGAGTTTATATGCCCTTCACTCTAACGTAAGATTAAATAGGGACACGTAACGCAATCTTATTCATCGATCCGATGTCGGATCGGTGGATAAGATTATGACACGTGTATGTCCATTAGTATAAAACGTATATATGTTCTAATTTTTGGACGATAGGGGCACTAATTTCCTTAAAATATGATGACGGAGGTATTTGCATATCATTTACGATAGTTTGAAATATATTTATCCTTTTTTTAAAAAAAAATAAAATTATACTATAGGGACAATATCTCTTTAAGAAAAGTTATTTTGAGACAGCCTTAAAGTCATTTCTTGTCGATTGTTTTAACAGGTGCAGAACTGGTTAATTGTTGTCCTCCGATGAGCGGAAGTATCATCGACTTCCAGCTTCCGTCGTCATCCACCCCACTCCGTACACGGCCAGCAGCTCAT</genome_strand>
        <mrna_strand>TCTCTTCTTCAACTACCAACACTTTTTCCAACTTGCATTCTTCTCCTTTCTTTGCAAAAACATCAAAAATTTCCTCCATTAGAAAGCATAATGTCCATCGTAATTTCCAGGTATCTTGCAAAACCATAGATGATAATAATCACGAACACAACTCACCCGTCGACATTTCTAAAAAGAACGATTCTTCAAACAATATGATCGATAGAAGAAACGTTCTACTTGGATTAGGAGGTTTATATGGTGCTTCTACTCTTGTTGGTGGTCTTCCCTTCGTCCTTGCCGCTCCGGTGAACGGACCCGACGTTACCAAATGTGGGGCCGCAGACTTGCCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAACTGGTTAATTGTTGTCCTCCGATGAGCGGAAGTATCATCGACTTCCAGCTTCCGTCGTCATCCACCCCACTCCGTACACGGCCAGCAGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541778" ref_strand="+" ref_description="SGN-E541778 [TUS-62-L24](-)">
      <seq>cgttgagtagcgtaaggaggctcgttgaagccagagcagctgatgacaataataataatattatgaattttcctagaccaaaagaaatatttcctacgaaacttgaccatgttataaaagttatggtaaaaaggccaaacaagaagaagaggaacaaaaaggagaaaaacgagagagaggagattttaattgttgaaggactagaagtggagagtgatgtgtttgttaagtttgatgttttgatcaatgacgaagatgaaacactgatttcaccagataatgctgagtttgctggaagttttgtgaacgtaccacatcatagtcatggtaaaggtgagaaaaattcgaaacgaaaaacgaagctaaaattagcgataactgagttgttggaggatttggatgctgaaaatgatgataatgtgttggtgacttttgtacccaagaatggttctggtgctgttaaaattgggggtgttaagattgtgcttgaggattagaaggaaaaaaaaagaacaagtcattttaattaaatcaaaataatataagcatttcttgatgtattttcttttaattaatatcctactgtttctgattaatgttgcatttggacaatgtaacttgtgtagacatgatgtttgcatggaataaaggaaggaaaagtagttggatatatttttacgtaattattttgtctcattttgactgagaaaaaaaagagagagaggaattatatattgtgtaaaatttcttgtatgactttgaaataaaatgtattctcagtttcattttaaaaaaaaaaaaaaagaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="130451" stop="157082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130751" g_stop="131541" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131542" i_stop="132214" i_length="673">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132215" g_stop="132223" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="799" r_length="9" r_score="0.778"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132224" i_stop="133235" i_length="1012">
            <donor d_prob="0.494" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133236" g_stop="133267" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="831" r_length="32" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E541778" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130751" e_stop="131541"/>
          <exon e_start="132215" e_stop="132223"/>
          <exon e_start="133236" e_stop="133267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGAGTAGCGTAAGGAGGCTCGTTGAAGCCAGAGCAGCTGATGACAATAATAATAATATTATGAATTTTCCTAGACCAAAAGAAATATTTCCTACGAAACTTGACCATGTTATAAAAGTTATGGTAAAAAGGCCAAACAAGAAGAAGAGGAACAAAAAGGAGAAAAACGAGAGAGAGGAGATTTTAATTGTTGAAGGACTAGAAGTGGAGAGTGATGTGTTTGTTAAGTTTGATGTTTTGATCAATGACGAAGATGAAACACTGATTTCACCAGATAATGCTGAGTTTGCTGGAAGTTTTGTGAACGTACCACATCATAGTCATGGTAAAGGTGAGAAAAATTCGAAACGAAAAACGAAGCTAAAATTAGCGATAACTGAGTTGTTGGAGGATTTGGATGCTGAAAATGATGATAATGTGTTGGTGACTTTTGTACCCAAGAATGGTTCTGGTGCTGTTAAAATTGGGGGTGTTAAGATTGTGCTTGAGGATTAGAAGGAAAAAAAAAAGAACAAGTCATTTTAATTAAATCAAAATAATATAAGCATTTCTTGATGTATTTTCTTTTAATTAATATCCTACTGTTTCTGATTAATGTTGCATTTGGACAATGTAACTTGTGTAGACATGATGTTTGCATGGAATAAAGGAAGGAAAAGTAGTTGGATATATTTTTACGTAATTATTTTGTCTCATTTTGACTGAGAAAAAAAAGAGAGAGAGGAATTATATATTGTGTAAAATTTCTTGTATGACTTTGAAATAAAATGTATTCTCAGTTTCATTTTACTTTGGTTTCTATTTTTCATTTTTACTCATTTATTTTAACAAATTAAAACAAAATTTTTACTTTTCTCATATCACTTTTAGTATTAAATGAATATTTAAAAATTTGAAGTTCTAAAATACCATTTAGTAAAATACATCTCGAATTAAAATTTTCTTAAAAGTGTATCAAGTTAACAATATTTATTATCGCTAAAAAATATTTTTATCATTATGCATATGACACAAATAAATAATATTGTACAAATTTAAAAGTATATTTATAAAATAATTAATTTTATATTGAAAAAATTACCGTTGAATCACATGTGCCTCATTTTTAACGTATAAATCCGCCTCGCAAGTAATATGAAAGGAAATGAGTATGATATGATTTTTTAAGACTTGTACAACTCACGCAATTTTAGAAAAATATTCCCTGTCTCGGCAAATCAAGAAAGAACATTAAATTTTCTATTATATCCTCGTTTAAACTTCTTGAAAATTTCTAAGTTTTAATTCATCTTTTTTGAAATCATATTTGATAAAGATAAAATTATAACTTTACCATGTTAATTATTATCATCTTAATATGTGTGTCTTTTCTAAGTGGGCAACTACATAGGGACACCGAATATATTACTTTTTGGGGCAGGCTCGATGCATCCACATGTATCCTTGTCATATTTGACGCTACAAAAAGGAAGTTATATTGTAATTGTCCACTGAGTTTATGTACATAATTATATTTATTAAGAATCAAAGCACGTCTGTTGGACTTTCCATTACCTTTTCCAATGTATTTTAATATTCAAATTCTATGTTGTAGTTGTATTGTAAGTATATATCATATTAGCTACTATTTGAGTATTAATTACTAATCTCTACATTCGATATTGTTTGATATGATTTCTATTTTTACAGTTAAATTATAAAAATTTTGACTAACGTTTTAAGATGTGTTTTTCATCATATTAATATGCAAAAAGTTGTAATTTATAGTACTTTTCATATAGTTTTAGAATATCTAATTTTATTATTTGAAATATCAAATTAATGTGATTCAATTTATCTTTGAAAATTAGTCAAATTGACTTTCTATAAGTGCAATATGACGAACAATTTCAGATGGAGATTATTTACTCCGTATAAGATAATATATAGTTTTTTTTTATCACTTTTGTATATACATATATTAGTTATTAGTTACGTAGATTTTTAAATTACATATTAAAATGTTATATAAAAATAATTTACTTTTTAACTTACCAACAAACGTTATGTAAAAATGAATACATGGAAGTTGTCTTTTTTTAAAACTACAAAAAGACCCCTACTTTTATTAAATTATACTCTCTATATTTCATTTTACTTGGCTAGAGTCTACCTGCTCTATTCTGTTACGTCAATTTAGTAACATATTGAAAAATAATGTCCACACATAAGATAACACTTGGTACAGCTGATCCCATTTGTCCTGGTGATCCCATTTATAATTTTTATTTAAAGGGGCTTAATTATAACATTATAATTGTTAGATAACTGATTCATGAAATTCTAGATTTGCCTTGGCTGAATCATCTCCACTGTGCCCCTTTCTGTCCCAATTGTCATCCTTTATATTTATGTGAATTTTATAGGGAAAGTTATATATAATAGCAAATTAATAATTTAAAATAAATGAATTAATTAGGGTTTGATTTAATTGTGTTCCACAGCAAATGTTTGCAAAAAATTGCCAGGCGTCTCT</genome_strand>
        <mrna_strand>CGTTGAGTAGCGTAAGGAGGCTCGTTGAAGCCAGAGCAGCTGATGACAATAATAATAATATTATGAATTTTCCTAGACCAAAAGAAATATTTCCTACGAAACTTGACCATGTTATAAAAGTTATGGTAAAAAGGCCAAACAAGAAGAAGAGGAACAAAAAGGAGAAAAACGAGAGAGAGGAGATTTTAATTGTTGAAGGACTAGAAGTGGAGAGTGATGTGTTTGTTAAGTTTGATGTTTTGATCAATGACGAAGATGAAACACTGATTTCACCAGATAATGCTGAGTTTGCTGGAAGTTTTGTGAACGTACCACATCATAGTCATGGTAAAGGTGAGAAAAATTCGAAACGAAAAACGAAGCTAAAATTAGCGATAACTGAGTTGTTGGAGGATTTGGATGCTGAAAATGATGATAATGTGTTGGTGACTTTTGTACCCAAGAATGGTTCTGGTGCTGTTAAAATTGGGGGTGTTAAGATTGTGCTTGAGGATTAGAAGG-AAAAAAAAAGAACAAGTCATTTTAATTAAATCAAAATAATATAAGCATTTCTTGATGTATTTTCTTTTAATTAATATCCTACTGTTTCTGATTAATGTTGCATTTGGACAATGTAACTTGTGTAGACATGATGTTTGCATGGAATAAAGGAAGGAAAAGTAGTTGGATATATTTTTACGTAATTATTTTGTCTCATTTTGACTGAGAAAAAAAAGAGAGAGAGGAATTATATATTGTGTAAAATTTCTTGTATGACTTTGAAATAAAATGTATTCTCAGTTTCATTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAAAAAAAAAAACTCGAGGGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299819" ref_strand="+" ref_description="SGN-E299819 [cLEW-1-K21](-)">
      <seq>agattttaattgttgaaggactacaagtgcaaagtaatgtgtttgttaagtttgatgttttgatcaatgacgaagatgcaacactgatttcaccagataatgctgagtttgctggaagttttgtgaacgttccacatcatagtcatggtaaaggtgagaaaaattcgaaacgaaaaacgaagctaaaattagcgataactaagttgttggaggatttggatgctaaaaatgatgataatgtgttggtgacttttgtacccaagaatggttctggtgctgttaaaattgggggtgttaagattgtgcttgagggttagaaggaaaaaaaaagaacaagtcattttaattagatcaaaataatataagcatttcctgatgtattttcttttaattaatatcctactgtttctgattaatgttgcatttggacaatgtaacttgtgtagacatgatgtttgcatggaataaaggaaggaaaagtagttggatatatttttacgtaattattttgtctcattttgcctgagaaaaaaaagagagagaggaattatatattgtgtaaaatttcttgtatgaatttgaaataaaatgtattctcagtttcattttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="130631" stop="131842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130931" g_stop="131540" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="628"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E299819" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130931" e_stop="131540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTAATTGTTGAAGGACTAGAAGTGGAGAGTGATGTGTTTGTTAAGTTTGATGTTTTGATCAATGACGAAGATGAAACACTGATTTCACCAGATAATGCTGAGTTTGCTGGAAGTTTTGTGAACGTACCACATCATAGTCATGGTAAAGGTGAGAAAAATTCGAAACGAAAAACGAAGCTAAAATTAGCGATAACTGAGTTGTTGGAGGATTTGGATGCTGAAAATGATGATAATGTGTTGGTGACTTTTGTACCCAAGAATGGTTCTGGTGCTGTTAAAATTGGGGGTGTTAAGATTGTGCTTGAGGATTAGAAGGAAAAAAAAAAGAACAAGTCATTTTAATTAAATCAAAATAATATAAGCATTTCTTGATGTATTTTCTTTTAATTAATATCCTACTGTTTCTGATTAATGTTGCATTTGGACAATGTAACTTGTGTAGACATGATGTTTGCATGGAATAAAGGAAGGAAAAGTAGTTGGATATATTTTTACGTAATTATTTTGTCTCATTTTGACTGAGAAAAAAAAGAGAGAGAGGAATTATATATTGTGTAAAATTTCTTGTATGACTTTGAAATAAAATGTATTCTCAGTTTCATTTT</genome_strand>
        <mrna_strand>AGATTTTAATTGTTGAAGGACTACAAGTGCAAAGTAATGTGTTTGTTAAGTTTGATGTTTTGATCAATGACGAAGATGCAACACTGATTTCACCAGATAATGCTGAGTTTGCTGGAAGTTTTGTGAACGTTCCACATCATAGTCATGGTAAAGGTGAGAAAAATTCGAAACGAAAAACGAAGCTAAAATTAGCGATAACTAAGTTGTTGGAGGATTTGGATGCTAAAAATGATGATAATGTGTTGGTGACTTTTGTACCCAAGAATGGTTCTGGTGCTGTTAAAATTGGGGGTGTTAAGATTGTGCTTGAGGGTTAGAAGG-AAAAAAAAAGAACAAGTCATTTTAATTAGATCAAAATAATATAAGCATTTCCTGATGTATTTTCTTTTAATTAATATCCTACTGTTTCTGATTAATGTTGCATTTGGACAATGTAACTTGTGTAGACATGATGTTTGCATGGAATAAAGGAAGGAAAAGTAGTTGGATATATTTTTACGTAATTATTTTGTCTCATTTTGCCTGAGAAAAAAAAGAGAGAGAGGAATTATATATTGTGTAAAATTTCTTGTATGAATTTGAAATAAAATGTATTCTCAGTTTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391510" ref_strand="-" ref_description="SGN-E391510 [TUS-16-E9](-)">
      <seq>gatgttttgatcaatgacgaagatgaaacactgatttcaccagataatgctgagtttgctggaagttttgtgaacgtaccacatcatagtcatggtaaaggtgagaaaaattcgaaacgaaaaacgaagctaaaattagcgataactgagttgttggaggatttggatgctgaaaatgatgataatgtgttggtgacttttgtacccaagaatggttctggtgctgttaaaattgggggtgttaagattgtgcttgaggattagaaggaaaaaaaaaagaacaagtcattttaattaaatcaaaataatataagcatttcttgatgtattttcttttaattaatatcctactgtttctgattaatgttgcatttggacaatgtaacttgtgtagacatgatgtttgcatggaataaaggaaggaaaagtagttggatatatttttacgtaattattttgtctcattttgactgagaggaaaaagagagagaggaattatatattgtgtaaaatttcttgtatgactttgaaataaaatgtattctcagtttcattttaaaaaaaaaaaaaaaaaactccagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="+" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="130684" stop="139829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130984" g_stop="131541" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131542" i_stop="133235" i_length="1694">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133236" g_stop="133271" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="592" r_length="34" r_score="0.528"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="+" ref_id="SGN-E391510" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391510" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="130984" e_stop="131541"/>
          <exon e_start="133236" e_stop="133271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTTTGATCAATGACGAAGATGAAACACTGATTTCACCAGATAATGCTGAGTTTGCTGGAAGTTTTGTGAACGTACCACATCATAGTCATGGTAAAGGTGAGAAAAATTCGAAACGAAAAACGAAGCTAAAATTAGCGATAACTGAGTTGTTGGAGGATTTGGATGCTGAAAATGATGATAATGTGTTGGTGACTTTTGTACCCAAGAATGGTTCTGGTGCTGTTAAAATTGGGGGTGTTAAGATTGTGCTTGAGGATTAGAAGGAAAAAAAAAAGAACAAGTCATTTTAATTAAATCAAAATAATATAAGCATTTCTTGATGTATTTTCTTTTAATTAATATCCTACTGTTTCTGATTAATGTTGCATTTGGACAATGTAACTTGTGTAGACATGATGTTTGCATGGAATAAAGGAAGGAAAAGTAGTTGGATATATTTTTACGTAATTATTTTGTCTCATTTTGACTGAGAAAAAAAAGAGAGAGAGGAATTATATATTGTGTAAAATTTCTTGTATGACTTTGAAATAAAATGTATTCTCAGTTTCATTTTACTTTGGTTTCTATTTTTCATTTTTACTCATTTATTTTAACAAATTAAAACAAAATTTTTACTTTTCTCATATCACTTTTAGTATTAAATGAATATTTAAAAATTTGAAGTTCTAAAATACCATTTAGTAAAATACATCTCGAATTAAAATTTTCTTAAAAGTGTATCAAGTTAACAATATTTATTATCGCTAAAAAATATTTTTATCATTATGCATATGACACAAATAAATAATATTGTACAAATTTAAAAGTATATTTATAAAATAATTAATTTTATATTGAAAAAATTACCGTTGAATCACATGTGCCTCATTTTTAACGTATAAATCCGCCTCGCAAGTAATATGAAAGGAAATGAGTATGATATGATTTTTTAAGACTTGTACAACTCACGCAATTTTAGAAAAATATTCCCTGTCTCGGCAAATCAAGAAAGAACATTAAATTTTCTATTATATCCTCGTTTAAACTTCTTGAAAATTTCTAAGTTTTAATTCATCTTTTTTGAAATCATATTTGATAAAGATAAAATTATAACTTTACCATGTTAATTATTATCATCTTAATATGTGTGTCTTTTCTAAGTGGGCAACTACATAGGGACACCGAATATATTACTTTTTGGGGCAGGCTCGATGCATCCACATGTATCCTTGTCATATTTGACGCTACAAAAAGGAAGTTATATTGTAATTGTCCACTGAGTTTATGTACATAATTATATTTATTAAGAATCAAAGCACGTCTGTTGGACTTTCCATTACCTTTTCCAATGTATTTTAATATTCAAATTCTATGTTGTAGTTGTATTGTAAGTATATATCATATTAGCTACTATTTGAGTATTAATTACTAATCTCTACATTCGATATTGTTTGATATGATTTCTATTTTTACAGTTAAATTATAAAAATTTTGACTAACGTTTTAAGATGTGTTTTTCATCATATTAATATGCAAAAAGTTGTAATTTATAGTACTTTTCATATAGTTTTAGAATATCTAATTTTATTATTTGAAATATCAAATTAATGTGATTCAATTTATCTTTGAAAATTAGTCAAATTGACTTTCTATAAGTGCAATATGACGAACAATTTCAGATGGAGATTATTTACTCCGTATAAGATAATATATAGTTTTTTTTTATCACTTTTGTATATACATATATTAGTTATTAGTTACGTAGATTTTTAAATTACATATTAAAATGTTATATAAAAATAATTTACTTTTTAACTTACCAACAAACGTTATGTAAAAATGAATACATGGAAGTTGTCTTTTTTTAAAACTACAAAAAGACCCCTACTTTTATTAAATTATACTCTCTATATTTCATTTTACTTGGCTAGAGTCTACCTGCTCTATTCTGTTACGTCAATTTAGTAACATATTGAAAAATAATGTCCACACATAAGATAACACTTGGTACAGCTGATCCCATTTGTCCTGGTGATCCCATTTATAATTTTTATTTAAAGGGGCTTAATTATAACATTATAATTGTTAGATAACTGATTCATGAAATTCTAGATTTGCCTTGGCTGAATCATCTCCACTGTGCCCCTTTCTGTCCCAATTGTCATCCTTTATATTTATGTGAATTTTATAGGGAAAGTTATATATAATAGCAAATTAATAATTTAAAATAAATGAATTAATTAGGGTTTGATTTAATTGTGTTCCACAGCAAATGTTTGCAAAAAATTGCCAGGCGTCTCTTTAT</genome_strand>
        <mrna_strand>GATGTTTTGATCAATGACGAAGATGAAACACTGATTTCACCAGATAATGCTGAGTTTGCTGGAAGTTTTGTGAACGTACCACATCATAGTCATGGTAAAGGTGAGAAAAATTCGAAACGAAAAACGAAGCTAAAATTAGCGATAACTGAGTTGTTGGAGGATTTGGATGCTGAAAATGATGATAATGTGTTGGTGACTTTTGTACCCAAGAATGGTTCTGGTGCTGTTAAAATTGGGGGTGTTAAGATTGTGCTTGAGGATTAGAAGGAAAAAAAAAAGAACAAGTCATTTTAATTAAATCAAAATAATATAAGCATTTCTTGATGTATTTTCTTTTAATTAATATCCTACTGTTTCTGATTAATGTTGCATTTGGACAATGTAACTTGTGTAGACATGATGTTTGCATGGAATAAAGGAAGGAAAAGTAGTTGGATATATTTTTACGTAATTATTTTGTCTCATTTTGACTGAGAGGAAAAAGAGAGAGAGGAATTATATATTGTGTAAAATTTCTTGTATGACTTTGAAATAAAATGTATTCTCAGTTTCATTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACT-CCAGAC-TAGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391511" ref_strand="+" ref_description="SGN-E391511 [TUS-16-E9]">
      <seq>agagaactagtctcgagttttttttttttttttttaaaatgaaactgagaatacattttatttcaaagtcatacaagaaattttacacaatatataattcctctctctcttttttttctcagtcaaaatgagacaaaataattacgtaaaaatatatccaactacttttccttcctttattccatgcaaacatcatgtctacacaagttacattgtccaaatgcaacattaatcagaaacagtaggatattaattaaaagaaaatacatcaagaaatgcttatattattttgatttaattaaaatgacttgttcttttttttttccttctaatcctcaagcacaatcttaacacccccaattttaacagcaccagaaccattcttgggtacaaaagtcaccaacacattatcatcattttcagcatccaaatcctccaacaactcagttatcgctaattttagcttcgtttttcgtttcgaatttttctcacctttaccatgactatgatgtggtacgttcacaaaacttccagcaaactcagcattatctggtgaaatcagtgtttcatcttcgtcattgatcaaaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="139829" stop="130684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131836" g_stop="131799" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.526"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131798" i_stop="131539" i_length="260">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131538" g_stop="130984" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="592" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E391511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131836" e_stop="131799"/>
          <exon e_start="131538" e_stop="130984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTAATTTTTTCAATATAAAATTAATTATTTTATAAATATACTTTTAAATTTGTACAATATTATTTATTTGTGTCATATGCATAATGATAAAAATATTTTTTAGCGATAATAAATATTGTTAACTTGATACACTTTTAAGAAAATTTTAATTCGAGATGTATTTTACTAAATGGTATTTTAGAACTTCAAATTTTTAAATATTCATTTAATACTAAAAGTGATATGAGAAAAGTAAAAATTTTGTTTTAATTTGTTAAAATAAATGAGTAAAAATGAAAAATAGAAACCAAAGTAAAATGAAACTGAGAATACATTTTATTTCAAAGTCATACAAGAAATTTTACACAATATATAATTCCTCTCTCTCTTTTTTTTCTCAGTCAAAATGAGACAAAATAATTACGTAAAAATATATCCAACTACTTTTCCTTCCTTTATTCCATGCAAACATCATGTCTACACAAGTTACATTGTCCAAATGCAACATTAATCAGAAACAGTAGGATATTAATTAAAAGAAAATACATCAAGAAATGCTTATATTATTTTGATTTAATTAAAATGACTTGTTCTTTTTTTTTTCCTTCTAATCCTCAAGCACAATCTTAACACCCCCAATTTTAACAGCACCAGAACCATTCTTGGGTACAAAAGTCACCAACACATTATCATCATTTTCAGCATCCAAATCCTCCAACAACTCAGTTATCGCTAATTTTAGCTTCGTTTTTCGTTTCGAATTTTTCTCACCTTTACCATGACTATGATGTGGTACGTTCACAAAACTTCCAGCAAACTCAGCATTATCTGGTGAAATCAGTGTTTCATCTTCGTCATTGATCAAAACATC</genome_strand>
        <mrna_strand>AGAGAACTAGTCTCGA-GTTTTTTTTTTTTTTTTTTAA....................................................................................................................................................................................................................................................................AATGAAACTGAGAATACATTTTATTTCAAAGTCATACAAGAAATTTTACACAATATATAATTCCTCTCTCTCTTTTTTTTCTCAGTCAAAATGAGACAAAATAATTACGTAAAAATATATCCAACTACTTTTCCTTCCTTTATTCCATGCAAACATCATGTCTACACAAGTTACATTGTCCAAATGCAACATTAATCAGAAACAGTAGGATATTAATTAAAAGAAAATACATCAAGAAATGCTTATATTATTTTGATTTAATTAAAATGACTTGTTCTTTTTTTTTTCCTTCTAATCCTCAAGCACAATCTTAACACCCCCAATTTTAACAGCACCAGAACCATTCTTGGGTACAAAAGTCACCAACACATTATCATCATTTTCAGCATCCAAATCCTCCAACAACTCAGTTATCGCTAATTTTAGCTTCGTTTTTCGTTTCGAATTTTTCTCACCTTTACCATGACTATGATGTGGTACGTTCACAAAACTTCCAGCAAACTCAGCATTATCTGGTGAAATCAGTGTTTCATCTTCGTCATTGATCAAAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546839" ref_strand="+" ref_description="SGN-E546839 [TUS-70-G15](-)">
      <seq>aagaagaatacaaaggcatcatctcctccacttcgtcttctgccactcagggtccaagcagttggcaagctgaatcctattgatgtaaagcgtctctcttttcatatgtttccaaatgtagcagctcaagattcaaattttgttgttcaattaacaagcacagttaatgaacaaaagtcagatgtagaagcggagaaagattctcaagtgaaaaccaaagatgatgaggagtttggacaagattgtgaaatgacagactcgccagatattctaccgactagtatggatgctcaatcagaaaatgaaggaacatgtaaaactggtgtcaaaaataatctaccagtgtcaggacatgttaccttggatgtgcttttacctccttcacttccagaacaaggagcagggcaacaatcaccactcactttgtcgttgaatgtcatagactcgcaaaaaccaacatctactctgcaaatttctttactcacaccagatggagatatatcattgaaccaaccatcgacttttgcaccagcagcaccacaaccaccacctccacctccacctccaccagtacccaattcatcagggaatgcagaagggtcaaggcctgctccattgttagcaaaaccaagtggtgttccacagcctcctcctcctcctccgccacctctcatgtcatcagccaatgtagcaacaccacaacatcctatgaaaccaatatctgcactcccaccaccaccaccaccacctcctcccaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="137527" stop="136162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137227" g_stop="136463" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E546839" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137227" e_stop="136463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAATACAAAGGCATCATACTCTCCACCTCGTCTTCTGCCACTCAGGGTTCAAGCAGTTGGCAAGCTGAATCCTATTGATGTAAAGCGTCTCTCTTTTCATATGTTTCCAAATGTAGCAGCTCAAGATTCAAATTTTGTTGTTCAATTAACAAGCACAGTTAATGAACAAAAGTCAGATGTAGAAGCGGAGAAAGATTCTCAAGTGAAAACCAAAGATGATGAGGAGTTTGGACAAGATTGTGAAATGACAGACTCACCAGATATTCTACCGACTAGTATGGATGCTCAACCAGAAAATGAAGGAACATGTAAAACTGGTGTCAAAAATAATCTACCAGTGTCAGGACATGTTACCTTGGATGTGCTTTTACCTCCTTCACTTCCAGAACAAGGAGCAGGGCAACAATCACCACTCACTTTGTCGTTGAATGTCATAGACTCGCAAAAACCAACATCTACTCTGCAAATTTCTTTACTCACACCAGATGGAGATATATCATTGAACCAACCATCGACTTTTGCACCAGCAGCACCACAACCACCA----C-CC-CCACCTCCACCAGTACCCAATTCATCAGGGAATGCAGAAGGGTCAAGGCCTGCTCCATTGTTAGCAAAACCAAGTGGTGTTCCACAGCCTCCTCCTCCTCCTCCTCCACCTCCCATGGCATCAGCCAATGTAGCAACACCACAACATCCTATGAAACCAATATCTGCACTCCCACCACCACCACCACCACCTCCTCCCATGACAAGAAAAGAA</genome_strand>
        <mrna_strand>AAGAAGAATACAAAGGCATCATCTCCTCCACTTCGTCTTCTGCCACTCAGGGTCCAAGCAGTTGGCAAGCTGAATCCTATTGATGTAAAGCGTCTCTCTTTTCATATGTTTCCAAATGTAGCAGCTCAAGATTCAAATTTTGTTGTTCAATTAACAAGCACAGTTAATGAACAAAAGTCAGATGTAGAAGCGGAGAAAGATTCTCAAGTGAAAACCAAAGATGATGAGGAGTTTGGACAAGATTGTGAAATGACAGACTCGCCAGATATTCTACCGACTAGTATGGATGCTCAATCAGAAAATGAAGGAACATGTAAAACTGGTGTCAAAAATAATCTACCAGTGTCAGGACATGTTACCTTGGATGTGCTTTTACCTCCTTCACTTCCAGAACAAGGAGCAGGGCAACAATCACCACTCACTTTGTCGTTGAATGTCATAGACTCGCAAAAACCAACATCTACTCTGCAAATTTCTTTACTCACACCAGATGGAGATATATCATTGAACCAACCATCGACTTTTGCACCAGCAGCACCACAACCACCACCTCCACCTCCACCTCCACCAGTACCCAATTCATCAGGGAATGCAGAAGGGTCAAGGCCTGCTCCATTGTTAGCAAAACCAAGTGGTGTTCCACAGCCTCCTCCTCCTCCTCCGCCACCTCTCATGTCATCAGCCAATGTAGCAACACCACAACATCCTATGAAACCAATATCTGCACTCCCACCACCACCACCACCACCTCCTCCCAAAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546840" ref_strand="+" ref_description="SGN-E546840 [TUS-70-G15]">
      <seq>attaattattcctattttgctctgcacgttatatgagtcttctttaatttatcaattttcctacaactattactaacattattttttaatcaatccaacaaacaaacattataatttttattttttttataataatattgaatgcttttgttcttcttcctcctcctccaacattcttttaataatttctattattctattgctttcattcaccggttttttgcgtcagcagataatatttctgttttttcaattgtcaaagttgacctggtaaattcatttttgtgttttttttcaatattgtataaaacttggtatttctcattagaaatggccattggagcatgctttggtgtgcctcctttcttttcacgcaggaagcatactacaacatatcaggaagaagagatgaaagagacaaagagaagtcctgttgtagaaaagaagaaaacacctcccatagcagtatcaaaaagttttaaatccaaaggttccacggttcgtaattcatctagagtagcagggaacttcataataatgactgagcttcggaacaagatccttaccttgagagacttgctcgacttgtccccttgtattggctctgcatctgtaaatgagctgctgcttttgacgctgaaagacctgcaacaactgtatcctacaatgaatccatctatttctttgtcaaaaatgatgaagcaccgatgcagcaggcactgcaattcttctttgatactctgatatcaattgggggaatgtggacagggcatgatgagtggatggtcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="139691" stop="137316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139391" g_stop="138994" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138993" i_stop="138325" i_length="669">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138324" g_stop="138103" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="621" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138102" i_stop="137886" i_length="217">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137885" g_stop="137790" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="716" r_length="95" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137789" i_stop="137692" i_length="98">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.487" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137691" g_stop="137616" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="792" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E546840" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139391" e_stop="138994"/>
          <exon e_start="138324" e_stop="138103"/>
          <exon e_start="137885" e_stop="137790"/>
          <exon e_start="137691" e_stop="137616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATTATTCCTATTTTGCTCTGCACGTTATATGAGTCTTCTTTAATTTATCAATTTTCCTACAACTATTATTACTACATTATTTTTTAATCAATCCAACAAACAAAACATTATAATTTTTTTATTTTTTTTTAATAATAAAAATAATATTGAATGCTCTTGTTCTTCTTCCTCCTCCTCCAACATTCTTCTAATAATTTCTATTATTTTATTGTTTTCATTCACCGTTTTTTTGCGTCAGCAGAT-A-A-----------T--ATTGTCAAAGTTGACCTGGTAAAATCATTTTTGTGTTTTTTTTCAATATTGTATAAAACTTGGTATTTCTCATTAGAAATGGCCATTGGAGCATGCTTTGGTGTGCCTCCTTTCTTTTCACGCAGGAAGCATACTACAACCTATCAGGTTTTTTCATTTTCTCTTAAATCTTTTGTTTATTTAACATGTTATGATCATCTTAAAAAGAATGTAAATTTATCTTAATTATGCATTTCTCAATATTTGAAATAAAACAAAACACACAATTAATCTATTTCTCCTCATAAAAGGTTTTGAATTTGATAACATATGATAAATCCTTAAGAAAACCTCAAAATGTTATGATCATATAAAAAAAATACAAATGTTCTGTTAATTTGTGCATGAAAAATCCTAAATATACCAAAAGGTTAAATTCTACATTATATTTATCAGAATCATATTCCATGCAGATTTCTCCCAATATTTCCTTTTTGACTCTATCTTCCATGTGTTTTTAAAGAAAAAAACTAGTGATTAATGAATTGCATCATATGATGAAACAGATTAAGAAGAGAAGGAAAAAAAAAGATTTAAGAGGGGAAGGTTGCATACAACAATAAGGTGATATAAAAAACCAGTTTTTGCTTAAGGAACAAAACAGCCCATGCATGCATATAATGATATTTGACAAAAACTTGAGAAAGAAATGTGGACAGATTGACTATGTATCTTGTTATATATGTGAATTATAATCTAAGAGCCAAGAAACCGAGAAACCGGTGACTTGGATATTATAATAGCATATTACTGATAGTAGTTGACAAACATTTGCAGGAAGAAGAGATGAAAGAGACAAAGAGAAGTCCTGTTGTTGAAAAGAAGAAAACACCTCCCATAGCAGTATCAAAAAGTTTTAAATCCAAAGGTTCCACGGTTCGTAATTCATCTAGAGTAGCAGGGAACTTCATAATAATGACTGAGCTTCGGAACAAGATCCTTACCTTGAGAGACTTGCTCGACTTGTCCCCTTGTATTGGCTCTGCATCTGTAAATGAGGTACATTTCTGTTATTTGTCTTTAGAACAGAAGACCAATCATATCAATCCGTAAAGAGTTTTAACTTGTATAAATGAATTGTACACCATCAGTATATTCAAAATGGTTATAGAAGGTTACTTAAACGCAATGTCAGTGTATAGAAGTTAAAACTCTGCAATAAAAAGAGCAAAGCAGAATTTTGTAACCTCTGTGGTGAATTCTTTTTTTTCCACAGCTGCTGCTTTTGACGCTGAAAGACCTGCAACAACTGTATCCTACAATGAATCCATCTATTTCTTTGTCAAAAATTGATGAAGCACCGATGCAGCAGGTTACTATTTACTCAGCTGTACTGAGTATTTACAAATTGAATGTTTGGGTATAGCGGATACACAGTTCACTGTGCTAACCAATTGTTATATTTCTCAGGCACTGCAATTCTTCTTTGATACTCTGATATCAATTGGGGAAATGTGGACAGGCAATGATGAGTGGATGGTCAAAT</genome_strand>
        <mrna_strand>ATTAA-TTATTCCTATTTTGCTCTGCACGTTATATGAGTCTTCTTTAATTTATCAATTTTCCTACAACTATTACTA--ACATTATTTTTTAATCAATCCAACAAAC-AAACATTATAA--TTTTTA-TTTTTTTT-ATAAT---AAT---ATTGAATGCTTTTGTTCTTCTTCCTCCTCCTCCAACATTCTTTTAATAATTTCTATTATTCTATTGCTTTCATTCACCGGTTTTTTGCGTCAGCAGATAATATTTCTGTTTTTTCAATTGTCAAAGTTGACCTGGTAAATTCATTTTTGTGTTTTTTTTCAATATTGTATAAAACTTGGTATTTCTCATTAGAAATGGCCATTGGAGCATGCTTTGGTGTGCCTCCTTTCTTTTCACGCAGGAAGCATACTACAACATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAGATGAAAGAGACAAAGAGAAGTCCTGTTGTAGAAAAGAAGAAAACACCTCCCATAGCAGTATCAAAAAGTTTTAAATCCAAAGGTTCCACGGTTCGTAATTCATCTAGAGTAGCAGGGAACTTCATAATAATGACTGAGCTTCGGAACAAGATCCTTACCTTGAGAGACTTGCTCGACTTGTCCCCTTGTATTGGCTCTGCATCTGTAAATGAG.........................................................................................................................................................................................................................CTGCTGCTTTTGACGCTGAAAGACCTGCAACAACTGTATCCTACAATGAATCCATCTATTTCTTTGTCAAAAA-TGATGAAGCACCGATGCAGCAG..................................................................................................GCACTGCAATTCTTCTTTGATACTCTGATATCAATTGGGGGAATGTGGACAGGGCATGATGAGTGGATGGTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363045" ref_strand="+" ref_description="SGN-E363045 [cLPP-2-P1]">
      <seq>ttaattattcctattttgctctgcacgttatatgagtcttctttaatttatcaattttcctacaactattactaacattattttttaatcaatccaacaaacaaacattataatttttattttttttataataatattgaatgcttttgttcttcttcctcctcctccaacattcttttaataatttctattattctattgctttcattcaccggttttttgcgtcagcagataatatttctgttttttcaattgtcaaagttgacctggtaaattcatttttgtgttttttttcaatattgtataaaacttggtatttctcattagaaatggccattggagcatgctttggtgtgcctcctttcttttcacgcaggaagcatactacaacatatcaggaagaagagatgaaagagacaaagagaagtcctgttgtagaaaagaagaaaacacctcccatagcagtatcaaaaagttttaaatccaaaggttccacggttcgtaattcatctagagtagcagggaacttcataataatgactgagcttcggaacaagatccttaccttgagagacttgctcgacttgtccccttgtattggctctgcatctgtaaatgagctgctgcttttgacgctgaaagacctgcaacaactgtatcctacaatgaatccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="139690" stop="137530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139389" g_stop="138994" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138993" i_stop="138325" i_length="669">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138324" g_stop="138103" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="620" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138102" i_stop="137886" i_length="217">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137885" g_stop="137830" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="676" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E363045" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139389" e_stop="138994"/>
          <exon e_start="138324" e_stop="138103"/>
          <exon e_start="137885" e_stop="137830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTATTCCTATTTTGCTCTGCACGTTATATGAGTCTTCTTTAATTTATCAATTTTCCTACAACTATTATTACTACATTATTTTTTAATCAATCCAACAAACAAAACATTATAATTTTTTTATTTTTTTTTAATAATAAAAATAATATTGAATGCTCTTGTTCTTCTTCCTCCTCCTCCAACATTCTTCTAATAATTTCTATTATTTTATTGTTTTCATTCACCGTTTTTTTGCGTCAGCAGAT-A-A-----------T--ATTGTCAAAGTTGACCTGGTAAAATCATTTTTGTGTTTTTTTTCAATATTGTATAAAACTTGGTATTTCTCATTAGAAATGGCCATTGGAGCATGCTTTGGTGTGCCTCCTTTCTTTTCACGCAGGAAGCATACTACAACCTATCAGGTTTTTTCATTTTCTCTTAAATCTTTTGTTTATTTAACATGTTATGATCATCTTAAAAAGAATGTAAATTTATCTTAATTATGCATTTCTCAATATTTGAAATAAAACAAAACACACAATTAATCTATTTCTCCTCATAAAAGGTTTTGAATTTGATAACATATGATAAATCCTTAAGAAAACCTCAAAATGTTATGATCATATAAAAAAAATACAAATGTTCTGTTAATTTGTGCATGAAAAATCCTAAATATACCAAAAGGTTAAATTCTACATTATATTTATCAGAATCATATTCCATGCAGATTTCTCCCAATATTTCCTTTTTGACTCTATCTTCCATGTGTTTTTAAAGAAAAAAACTAGTGATTAATGAATTGCATCATATGATGAAACAGATTAAGAAGAGAAGGAAAAAAAAAGATTTAAGAGGGGAAGGTTGCATACAACAATAAGGTGATATAAAAAACCAGTTTTTGCTTAAGGAACAAAACAGCCCATGCATGCATATAATGATATTTGACAAAAACTTGAGAAAGAAATGTGGACAGATTGACTATGTATCTTGTTATATATGTGAATTATAATCTAAGAGCCAAGAAACCGAGAAACCGGTGACTTGGATATTATAATAGCATATTACTGATAGTAGTTGACAAACATTTGCAGGAAGAAGAGATGAAAGAGACAAAGAGAAGTCCTGTTGTTGAAAAGAAGAAAACACCTCCCATAGCAGTATCAAAAAGTTTTAAATCCAAAGGTTCCACGGTTCGTAATTCATCTAGAGTAGCAGGGAACTTCATAATAATGACTGAGCTTCGGAACAAGATCCTTACCTTGAGAGACTTGCTCGACTTGTCCCCTTGTATTGGCTCTGCATCTGTAAATGAGGTACATTTCTGTTATTTGTCTTTAGAACAGAAGACCAATCATATCAATCCGTAAAGAGTTTTAACTTGTATAAATGAATTGTACACCATCAGTATATTCAAAATGGTTATAGAAGGTTACTTAAACGCAATGTCAGTGTATAGAAGTTAAAACTCTGCAATAAAAAGAGCAAAGCAGAATTTTGTAACCTCTGTGGTGAATTCTTTTTTTTCCACAGCTGCTGCTTTTGACGCTGAAAGACCTGCAACAACTGTATCCTACAATGAATCCATC</genome_strand>
        <mrna_strand>TTAATTATTCCTATTTTGCTCTGCACGTTATATGAGTCTTCTTTAATTTATCAATTTTCCTACAACTATTACTA--ACATTATTTTTTAATCAATCCAACAAAC-AAACATTATAA--TTTTTA-TTTTTTTT-ATAAT---AAT---ATTGAATGCTTTTGTTCTTCTTCCTCCTCCTCCAACATTCTTTTAATAATTTCTATTATTCTATTGCTTTCATTCACCGGTTTTTTGCGTCAGCAGATAATATTTCTGTTTTTTCAATTGTCAAAGTTGACCTGGTAAATTCATTTTTGTGTTTTTTTTCAATATTGTATAAAACTTGGTATTTCTCATTAGAAATGGCCATTGGAGCATGCTTTGGTGTGCCTCCTTTCTTTTCACGCAGGAAGCATACTACAACATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAGATGAAAGAGACAAAGAGAAGTCCTGTTGTAGAAAAGAAGAAAACACCTCCCATAGCAGTATCAAAAAGTTTTAAATCCAAAGGTTCCACGGTTCGTAATTCATCTAGAGTAGCAGGGAACTTCATAATAATGACTGAGCTTCGGAACAAGATCCTTACCTTGAGAGACTTGCTCGACTTGTCCCCTTGTATTGGCTCTGCATCTGTAAATGAG.........................................................................................................................................................................................................................CTGCTGCTTTTGACGCTGAAAGACCTGCAACAACTGTATCCTACAATGAATCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539095" ref_strand="+" ref_description="SGN-E539095 [TUS-58-K22](-)">
      <seq>gagaatggaagaattagtgatcgagaggcaaaagaggattgcagaaagaagtgcagctaagggttcgtccccagcagcttccaagaaagggccagcaggaagtaaaacagcttcaaagatctcaccttcatccaaacttcacacatttccagtgcaggtcaagcattaaggagcaatccatcaaggaaaagtatgatccgaccttaaaatatatttgattgctttgccgcgaatatggaacatccacaattcactgctttgtgcacattggattatccacaaatatatcttggagaaataaaatattttcgatgaaaattatagatttttttctttactaggacagctctgcttgctggcttgatgcaagttattccttctcatttatttagacattcatgtcccatcataaggttttgccagtatagttgcttgaggctttattattatttgtatattgctatttgttcatatgttgtgtaaagttatatttaaatctacctgtgagttaaaacttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="142238" stop="141111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141938" g_stop="141410" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E539095" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141938" e_stop="141410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTATTTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTACCTGTGAGTTAAAACTTCTAATACCAAAT</genome_strand>
        <mrna_strand>GAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTATTTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTACCTGTGAGTTAAAACTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539098" ref_strand="+" ref_description="SGN-E539098 [TUS-58-K22]">
      <seq>gagaatggaagaattagtgatcgagaggcaaaagaggattgcagaaagaagtgcagctaagggttcgtccccagcagcttccaagaaagggccagcaggaagtaaaacagcttcaaagatctcaccttcatccaaacttcacacatttccagtgcaggtcaagcattaaggagcaatccatcaaggaaaagtatgatccgaccttaaaatatatttgattgctttgccgcgaatatggaacatccacaattcactgctttgtgcacattggattatccacaaatatatcttggagaaataaaatattttcgatgaaaattatagatttttttctttactaggacagctctgcttgctggcttgatgcaagttattccttctcatttatttagacattcatgtcccatcataaggttttgccagtatagttgcttgaggctttattattatttgtatattgctatttgttcatatgttgtgtaaagttatatttaaatctacctgtgagttaaaacttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="142238" stop="141111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141938" g_stop="141410" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E539098" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141938" e_stop="141410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTATTTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTACCTGTGAGTTAAAACTTCTAATACCAAAT</genome_strand>
        <mrna_strand>GAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTATTTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTACCTGTGAGTTAAAACTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546123" ref_strand="+" ref_description="SGN-E546123 [TUS-69-F6](-)">
      <seq>gaaggacagtcttgcaaagaccggaaaagatgcaaggtctaaagtctccccaggatctctgtcaaggagcaggattgatgctttagcaaagagcaagaagatgtctcctcctactaacaaactgacaacccagaagagcaaattagatcgggacgaagaaatgcgcaagagaatggaagaattagtgatcgagaggcaaaagaggattgcagaaagaagtgcagctaagggttcgtccccagcagcttccaagaaagggccagctggaaataaaacagcttcaaagatctcaccttcatccaaacttcacacatttccagtgcaggtcaagcattaaggagcaatccatcaaggaaaagtatgatccgaccttaaaatatatttgattgctttgccgcgaatatggaacatccacaattcactgctttgtgcacattggattatccacaaatatatcttggagaaataaaatattttcgatgaaaattatagatttttttctttactaggacagctctgcttgctggcttgatgcaagttattccttctcatttatttagacattcatgtcccatcataaggttttgccagtatagttgcttgaggctttattattattgtatattgctatttgttcatatgttgtgtaaagttatatttaaatctatctgtgagttaaaacttctattcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="142500" stop="141111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142200" g_stop="142050" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142049" i_stop="141956" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141955" g_stop="141412" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="694" r_length="543" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="707"/>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E546123" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142200" e_stop="142050"/>
          <exon e_start="141955" e_stop="141412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACAGTCTTGCAAAGACCGGAAAAGATGCAAGGTCTAAAGTCTCCCCAGGATCTCTGTCAAGGAGCAGGATTGATGCTTTAGCAAAGAGCAAGAAGATGTCTCCTCCTACTAACAAACTGACAACCCAGAAGAGCAAATTAGATCGGGTACGACAATAACCAGTAACCTCATTTTCCCATTGTTTTTGCCTCCATTATTTTTGTCTTTCTTATAAATCATACTTCCTCATTGTTTAAATAGGACGAAGAAATGCGCAAGAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTATTTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTACCTGTGAGTTAAAACTTCTAATACCAA</genome_strand>
        <mrna_strand>GAAGGACAGTCTTGCAAAGACCGGAAAAGATGCAAGGTCTAAAGTCTCCCCAGGATCTCTGTCAAGGAGCAGGATTGATGCTTTAGCAAAGAGCAAGAAGATGTCTCCTCCTACTAACAAACTGACAACCCAGAAGAGCAAATTAGATCGG..............................................................................................GACGAAGAAATGCGCAAGAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCTGGAAATAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTA-TTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTATCTGTGAGTTAAAACTTCTATTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543562" ref_strand="+" ref_description="SGN-E543562 [TUS-65-H3](-)">
      <seq>gattgaagcttctttcattcaagttgataaaaaatcttctgcagttgaggcaaaacctcctcctactgaagaaactgttcctgtgaaaggtaaaagcacaactaagaaggacagtcttgcaaagaccggaaaagatgcaaggtctaaagtctccccaggatctctgtcaaggagcaggattgatgctttagcaaagagcaagaagatgtctcctcctactaacaaactgacaacccagaagagcaaattagatcgggacgaagaaatgcgcaagagaatggaagaattagtgatcgagaggcaaaagaggattgcagaaagaagtgcagctaagggttcgtccccagcagcttccaagaaagggccagcaggaagtaaaacagcttcaaagatctcaccttcatccaaacttcacacatttccagtgcaggtcaagcattaaggagcaatccatcaaggaaaagtatgatccgaccttaaaatatatttgattgctttgccgcgaatatggaacatccacaattcactgctttgtgcacattggattatccacaaatatatcttggagaaataaaatattttcgatgaaaattatagatttttttctttactaggacagctctgcttgctggcttgatgcaagttattccttctcatttatttagacattcatgtcccatcataaggttttgccagtatagttgcttgaggctttattattatttgtatattgctatttgttcatatgttgtgtaaagttatatttaaatctacctgtgagttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="142605" stop="141125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142305" g_stop="142050" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142049" i_stop="141956" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141955" g_stop="141416" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="796" r_length="540" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E543562" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142305" e_stop="142050"/>
          <exon e_start="141955" e_stop="141416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAAGCTTCTTTCATTCAAGTTGATAAAAAATCTTCTGCAGTTGAGGCAAAACCTCCTCCTACTGAAGAAACTGTTCCTGTGAAAGGTAAAAGCACAACTAAGAAGGACAGTCTTGCAAAGACCGGAAAAGATGCAAGGTCTAAAGTCTCCCCAGGATCTCTGTCAAGGAGCAGGATTGATGCTTTAGCAAAGAGCAAGAAGATGTCTCCTCCTACTAACAAACTGACAACCCAGAAGAGCAAATTAGATCGGGTACGACAATAACCAGTAACCTCATTTTCCCATTGTTTTTGCCTCCATTATTTTTGTCTTTCTTATAAATCATACTTCCTCATTGTTTAAATAGGACGAAGAAATGCGCAAGAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTATTTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTACCTGTGAGTTAAAACTTCTAATA</genome_strand>
        <mrna_strand>GATTGAAGCTTCTTTCATTCAAGTTGATAAAAAATCTTCTGCAGTTGAGGCAAAACCTCCTCCTACTGAAGAAACTGTTCCTGTGAAAGGTAAAAGCACAACTAAGAAGGACAGTCTTGCAAAGACCGGAAAAGATGCAAGGTCTAAAGTCTCCCCAGGATCTCTGTCAAGGAGCAGGATTGATGCTTTAGCAAAGAGCAAGAAGATGTCTCCTCCTACTAACAAACTGACAACCCAGAAGAGCAAATTAGATCGG..............................................................................................GACGAAGAAATGCGCAAGAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTATTTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTACCTGTGAGTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280949" ref_strand="+" ref_description="SGN-E280949 [cLER-7-G7]">
      <seq>agaatggaagaattagtgatcgagaggcaaaagaggattgcagaaagaagtgcagctaagggttcgtccccagcagcttccaagaaagggccagcaggaagtaaaacagcttcaaagatctcaccttcatccaaacttcacacatttccagtgcaggtcaagcattaaggagcaatccatcaaggaaaagtatgatccgaccttaaaatatatttgattgctttgccgcgaatatggaacatccacaattcactgctttgtgcacattggattatccacaaatatatcttggagaaataaaatattttcgatgaaaattatagatttttttctttactaggacagctctgcttgctggcttgatgcaagttattccttctcatttatttagacattcatgtcccatcataaggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="142237" stop="141221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141937" g_stop="141521" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E280949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141937" e_stop="141521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTT</genome_strand>
        <mrna_strand>AGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543563" ref_strand="+" ref_description="SGN-E543563 [TUS-65-H3]">
      <seq>ggagccaagtatgaatgggaccagtgaccagctacctttggacttccaggatgaaggctatgggatcaagaattctggtgagaaggtcagaagagaccatctgacacctgatgattctcttatgagcaaaaatcatgaagataatggcacaaaggttaacatggtagattttgccaatggtgaggatatgaggccaagtttgaagaaaggagtttctgaagatgtgcatcttctattttcgcacaaagaaccatcaggaggcaatacattgggaactccatctgattttggttctgaatcctctgctattagaaatagtaatggggaagattggtttgttgtcaaccactccggcagttcagaaactcaagagactaggcgaatgatatttgacaatgacagtagcatgtcaactcagaaaagttcctctcaagtcgaaagtgaaagagctgctcctattgatgattctttcatggtacagtctcgaccagcttttgatgatcaatatggttctcagtggaaaacagacattggcatggatgcagacttggttgctgcagcaaatgctgaaaatagtgatccagttgcatcaaaaaccaagcttagtacatatgggaccagtcaacctgatgacctctgtgtggtgctggcaagagaaactagtttggatcctcttgaggcatcttggcaaccagaattggattttcagaatgaagcttctttcattcaagttgataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="143313" stop="141972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143013" g_stop="142272" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E543563" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143013" e_stop="142272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCCAAGTATGAATGGGACCAGTGACCAGCTACCTTTGGACTTCCAGGATGAAGGCTATGGGATCAAGAATTCTGGTGAGAAGGTCAGAAGAGACCATCTGACACCTGATGATTCTCTTATGAGCAAAAATCATGAAGATAATGGCACAAAGGTTAACATGGTAGATTTTGCCAATGGTGAGGATATGAGGCCAAGTTTGAAGAAAGGAGTTTCTGAAGATGTGCATCTTCTATTTTCGCACAAAGAACCATCAGGAGGCAATACATTGGGAACTCCATCTGATTTTGGTTCTGAATCCTCTGCTATTAGAAATAGTAATGGGGAAGATTGGTTTGTTGTCAACCACTCCGGCAGTTCAGAAACTCAAGAGACTAGGCGAATGATATTTGACAATGACAGTAGCATGTCAACTCAGAAAAGTTCCTCTCAAGTCGAAAGTGAAAGAGCTGCTCCTATTGATGATTCTTTCATGGTACAGTCTCGACCAGCTTTTGATGATCAATATGGTTCTCAGTGGAAAACAGACATTGGCATGGATGCAGACTTGGTTGCTGCAGCAAATGCTGAAAATAGTGATCCAGTTGCATCAAAAACCAAGCTTAGTACATATGGGACCAGTCAACCTGATGACCTCTGTGTGGTGCTGGCAAGAGAAACTAGTTTGGATCCTCTTGAGGCATCTTGGCAACCAGAATTGGATTTTCAGATTGAAGCTTCTTTCATTCAAGTTGATAAAAAA</genome_strand>
        <mrna_strand>GGAGCCAAGTATGAATGGGACCAGTGACCAGCTACCTTTGGACTTCCAGGATGAAGGCTATGGGATCAAGAATTCTGGTGAGAAGGTCAGAAGAGACCATCTGACACCTGATGATTCTCTTATGAGCAAAAATCATGAAGATAATGGCACAAAGGTTAACATGGTAGATTTTGCCAATGGTGAGGATATGAGGCCAAGTTTGAAGAAAGGAGTTTCTGAAGATGTGCATCTTCTATTTTCGCACAAAGAACCATCAGGAGGCAATACATTGGGAACTCCATCTGATTTTGGTTCTGAATCCTCTGCTATTAGAAATAGTAATGGGGAAGATTGGTTTGTTGTCAACCACTCCGGCAGTTCAGAAACTCAAGAGACTAGGCGAATGATATTTGACAATGACAGTAGCATGTCAACTCAGAAAAGTTCCTCTCAAGTCGAAAGTGAAAGAGCTGCTCCTATTGATGATTCTTTCATGGTACAGTCTCGACCAGCTTTTGATGATCAATATGGTTCTCAGTGGAAAACAGACATTGGCATGGATGCAGACTTGGTTGCTGCAGCAAATGCTGAAAATAGTGATCCAGTTGCATCAAAAACCAAGCTTAGTACATATGGGACCAGTCAACCTGATGACCTCTGTGTGGTGCTGGCAAGAGAAACTAGTTTGGATCCTCTTGAGGCATCTTGGCAACCAGAATTGGATTTTCAGAATGAAGCTTCTTTCATTCAAGTTGATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305028" ref_strand="+" ref_description="SGN-E305028 [cLEX-10-O16]">
      <seq>gagccaagtatgaatgggaccagtgaccagctacctttggacttccaggatgaaggctatgggatcaagaattctggtgagaaggtcagaagagaccatctgacacctgatgattctcttatgagcaaaaatcatgaagataatggcacaaaggttaacatggtagattttgccaatggtgaggatatgaggccaagtttgaagaaaggagtttctgaagatgtgcatcttctattttcgcacaaagaaccatcaggaggcaatacattgggaactccatctgattttggttctgaatcctctgctattagaaatagtaatggggaagattggtttgttgtcaaccactccggcagttcagaaactcaagagactaggcgaatgatatttgacaatgacagtagcatgtcaactcagaaaagttcctctcaagtcgaaagtgaaagagctgctcctattgatgattctttcatggtacagtctcgaccagcttttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="143312" stop="142212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143012" g_stop="142512" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E305028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143012" e_stop="142512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCAAGTATGAATGGGACCAGTGACCAGCTACCTTTGGACTTCCAGGATGAAGGCTATGGGATCAAGAATTCTGGTGAGAAGGTCAGAAGAGACCATCTGACACCTGATGATTCTCTTATGAGCAAAAATCATGAAGATAATGGCACAAAGGTTAACATGGTAGATTTTGCCAATGGTGAGGATATGAGGCCAAGTTTGAAGAAAGGAGTTTCTGAAGATGTGCATCTTCTATTTTCGCACAAAGAACCATCAGGAGGCAATACATTGGGAACTCCATCTGATTTTGGTTCTGAATCCTCTGCTATTAGAAATAGTAATGGGGAAGATTGGTTTGTTGTCAACCACTCCGGCAGTTCAGAAACTCAAGAGACTAGGCGAATGATATTTGACAATGACAGTAGCATGTCAACTCAGAAAAGTTCCTCTCAAGTCGAAAGTGAAAGAGCTGCTCCTATTGATGATTCTTTCATGGTACAGTCTCGACCAGCTTTTGATGAT</genome_strand>
        <mrna_strand>GAGCCAAGTATGAATGGGACCAGTGACCAGCTACCTTTGGACTTCCAGGATGAAGGCTATGGGATCAAGAATTCTGGTGAGAAGGTCAGAAGAGACCATCTGACACCTGATGATTCTCTTATGAGCAAAAATCATGAAGATAATGGCACAAAGGTTAACATGGTAGATTTTGCCAATGGTGAGGATATGAGGCCAAGTTTGAAGAAAGGAGTTTCTGAAGATGTGCATCTTCTATTTTCGCACAAAGAACCATCAGGAGGCAATACATTGGGAACTCCATCTGATTTTGGTTCTGAATCCTCTGCTATTAGAAATAGTAATGGGGAAGATTGGTTTGTTGTCAACCACTCCGGCAGTTCAGAAACTCAAGAGACTAGGCGAATGATATTTGACAATGACAGTAGCATGTCAACTCAGAAAAGTTCCTCTCAAGTCGAAAGTGAAAGAGCTGCTCCTATTGATGATTCTTTCATGGTACAGTCTCGACCAGCTTTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356477" ref_strand="+" ref_description="SGN-E356477 [cLHT-20-I6]">
      <seq>aggcaaaatgtaaatggctccacaaatggttctgttagggactctcacaaacggtcaaagaagaaggagaaatccaaagaacataacagttcagaagatgatgaacagactgagtcgagtgcctctgattctggaactgattcagatgaagttaggaagcatgagaaaaagcattcttcaagggagaactcacatgctaaaaagcacaagaagaaatcctcaaaaacagttgtaatccgcaacatcaattatatcacttccaatagaaagaatgaggaaaatgatggatcttcttatgattcatcttcagctgaatctcatttactcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="143870" stop="142943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143573" g_stop="143243" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E356477" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143573" e_stop="143243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAAAATGTAAATGGCTCCACAAATGGTTCTGTTAGGGACTCTCACAAACGCTCAAAGAAGAAGGAGAAATCCAAAGAACATAACAGTTCAGAAGATGATGAACAGACTGAGTCGAGTGCCTCTGATTCTGGAACTGATTCAGATGAAGTTAGGAAGCATGAGAAAAAGCATTCTTCAAGGGAGAACTCACATGCTAAAAAGCACAAGAAGAAATCCTCAAAAAGAGTTGTAATCCGCAACATCAATTATATCACTTCCAATAGAAAGAATGAGGAAAATGATGGATCTTCTTATGATTCATCTTCAGCTGAATCTCATTTACTCGATG</genome_strand>
        <mrna_strand>AGGCAAAATGTAAATGGCTCCACAAATGGTTCTGTTAGGGACTCTCACAAACGGTCAAAGAAGAAGGAGAAATCCAAAGAACATAACAGTTCAGAAGATGATGAACAGACTGAGTCGAGTGCCTCTGATTCTGGAACTGATTCAGATGAAGTTAGGAAGCATGAGAAAAAGCATTCTTCAAGGGAGAACTCACATGCTAAAAAGCACAAGAAGAAATCCTCAAAAACAGTTGTAATCCGCAACATCAATTATATCACTTCCAATAGAAAGAATGAGGAAAATGATGGATCTTCTTATGATTCATCTTCAGCTGAATCTCATTTACTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356467" ref_strand="+" ref_description="SGN-E356467 [cLHT-20-C4]">
      <seq>cacaaatggttctgttagggactctcacaaacggtcaaagaagaaggagaaatccaaagaacataacagttcacaagatgatgaacagactgagtcgagtgcctctgattctggaactgattcaaatgaagttaggaagcatgagaaaaagcattcttcaagggagaactcacatgctanaaagcacaggaggaaatcctcaaaaacagttgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="143853" stop="143038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143553" g_stop="143338" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E356467" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143553" e_stop="143338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGGTTCTGTTAGGGACTCTCACAAACGCTCAAAGAAGAAGGAGAAATCCAAAGAACATAACAGTTCAGAAGATGATGAACAGACTGAGTCGAGTGCCTCTGATTCTGGAACTGATTCAGATGAAGTTAGGAAGCATGAGAAAAAGCATTCTTCAAGGGAGAACTCACATGCTAAAAAGCACAAGAAGAAATCCTCAAAAAGAGTTGTAAT</genome_strand>
        <mrna_strand>CACAAATGGTTCTGTTAGGGACTCTCACAAACGGTCAAAGAAGAAGGAGAAATCCAAAGAACATAACAGTTCACAAGATGATGAACAGACTGAGTCGAGTGCCTCTGATTCTGGAACTGATTCAAATGAAGTTAGGAAGCATGAGAAAAAGCATTCTTCAAGGGAGAACTCACATGCTANAAAGCACAGGAGGAAATCCTCAAAAACAGTTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729391" ref_strand="+" ref_description="SGN-E729391 [LA20DF09]">
      <seq>gataaagagtgatcttgtggtgttttctgggggtaaaaatgagaaattggcatctgggttggtggaaccattcatttctcacttgaaatttgctaaagatcagattccaaaaggtgggtattcaatcactatgaggccaccttcaactcatgcctactggttcaccaaagccacattcctaagatttgtacgctttgttagtacacctgaaattcttgagaggtttatgcgattggaacgagagatctcacagatcgagagttccattcaatccaatgaatgctccaatggcaattcagaggaaggaagctcaccagctaatagtgagagcaccaggaaatcaaacgattcgttcaaggcaaaatctgaagttgaagaagctaataatgctgcacctaaagaaaactccaagattcaccttcaacgccacctggatacccgaaaggcattacttaggaaagagcaggccatggcttatgcgcgtgcaaccgttgcaggctttgagatagaccaattggatgatctcatacagtttgctaattcttttggtgcagtacgtcttagggatgcatgtgtagatttcaaggaactttacaaacaaaagcacacagatggacaatggatggatgaggtagctgcaatgaaggcatgtacaccaatggatctatcgtacttgggaaatcaaggtgttattcttgcatatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146345" stop="143797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146045" g_stop="145862" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145470" g_stop="145349" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="305" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145193" g_stop="145141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="358" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145047" g_stop="144995" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="411" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144904" g_stop="144752" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="564" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144751" i_stop="144241" i_length="511">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144240" g_stop="144097" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="708" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E729391" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146045" e_stop="145862"/>
          <exon e_start="145470" e_stop="145349"/>
          <exon e_start="145193" e_stop="145141"/>
          <exon e_start="145047" e_stop="144995"/>
          <exon e_start="144904" e_stop="144752"/>
          <exon e_start="144240" e_stop="144097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGGTATAATTTTTGTTTGATCTTTGAAAAGTTTCAAGCTTTTAGTAATTTTGTCATTGTTCATTAGTACCAACATGTTACTTGCAGATGATCTTGATGGTGAAATTGGTCATAAAGCATCACTAGATTGTGATTATTATGGGTTAAAAATGTAGACTAAATGTGTATAGACTTTTTGCTAATAACTTCTAACCAGATATAATTGCTCATTGGACATCTTGGAAACAGGGTAGTGTTGTTTTAGCATAATTAGTGTTCTTTTGCATTTTAGAAGTTATTCTCTAGTTGCAAACTGTTAGAATAATGGATTCTTGTTGGATCTAGCATAAATGTGAAGCTGATGCAATGGTAGACTCGATTTTATTTACCTGTGGTTTCTTTGTGTTTGTGGCAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAGGTATGTTCAAGACATCAAATTAGATACCCATTGTCCATTAGATTTAATTCTAGATTTCTTCTTTTTATGATAATAACATTTGTAGTTTTGTTTCTTAGTAGAGTTCATACCATTTTGAGATTGGGGCTAATGTACATTTGTTGCTTGACTTGCAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGTATTTTACTTGATCACAGTTAGATTTTTGGCTAGTGATTTCCATTTAGTCTAGTAGCTCATTATAAAATTTCGCTTTGATTGGTTTTTCTAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGTAAGTTTTCTTCCCTTGGAAGCAACAGTGAATTGTAAATGCATCTCCACGAGAGAATCTTACTGAGTTATTTGTTTTTTATCATTTCAGGATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGTACGTCTTAGGTATGATACAGTAAAGTGTCTCCATCATAACCTATGTTTTGTAGCTTAGGTATATAGATAAAGAAAAACAACTGGTGTAAAATGAATCACCAATGTTTGTCTTTGACTACTTTAGTTGGAAGAAACATTTATGGCAGGTTCCAATTATCATTGTGAACCTTTGTTTCCATTCTGGTGCATAGCTGAAAACACAGTCTGGAGGACATCTGCTGTCTAACAATCGAAGAAATCATCACATCGTTATGTTTATCCTTGTTTTAATGTCTGTTACTCTTCTATTTGCTGTAAGGTAAATTGTACACTTGTCCATTTTATATTGATTTTTGAAGGAAGCCTTTCCTACATATGGAACTAGAGAACTCCTAGGTGTAGCTTTTGACGATGATATAATAACAAGCTTCTACGTCTTTCACTGTATACATAGTACTATTAGGGAGATGTCAAAATTGAGTCAACTGTTATAATTCCATTTTTTGTAACTTCAGTTTGTGTGATCTTATCTTTCTTGTAGGGATGCATGTGTAGATTTCAAGGAACTTTACAAACAAAAGCACACAGATGGACAATGGATGGATGAGGTAGCTGCAATGAAGGCATGTACACCAATGGATCTATCGTACTTGGGAAATCAAGGTGTTATTCTTGCATATGACAA</genome_strand>
        <mrna_strand>GATAAAGA-GTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAG...........................................................................................................................................................GAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAG.............................................................................................GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAA..........................................................................................GATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGTACGTCTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCATGTGTAGATTTCAAGGAACTTTACAAACAAAAGCACACAGATGGACAATGGATGGATGAGGTAGCTGCAATGAAGGCATGTACACCAATGGATCTATCGTACTTGGGAAATCAAGGTGTTATTCTTGCATATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739938" ref_strand="+" ref_description="SGN-E739938 [LC19BF10]">
      <seq>attttttcaccattttctcccctttgtccactaagctttgctttagttaaacatggattccaagacccttcttgattatgcactgtttcagctcaccccaactagaacaagatgtgatcttgtggtgttttctgggggtaaaaatgagaaattggcatctgggttggtggaaccattcatttctcacttgaaatttgctaaagatcagattccaaaaggtgggtattcaatcactatgaggccaccttcaactcatgcctactggttcaccaaagccacattcctaagatttgtacgctttgttagtacacctgaaattcttgagaggtttatgcgattggaacgagagatctcacagatcgagagttccattcaatccaatgaatgctccaatggcaattcagaggaaggaagctcaccagctaatagtgagagcaccaggaaatcaaacgattcgttcaaggcaaaatctgaagttgaagaagctaataatgctgcacctaaagaaaactccaagattcaccttcaacgccacctggatacccgaaaggcattacttaggaaagagcaggccatggcttatgcgcgtgcaaccgttgcaggctttgagatagaccaattggatgatctcatacagtttgctaattcttttggtgcagtacgtcttagggatgcatgtgtagatttcaaggaactttacaaacaaaagcacacagatggacaatggatggatgaggtagctgcaatgaaggcatgtacaccaatggatctatcgtacttgggaaatcaaggtgttattcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146587" stop="143806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146287" g_stop="146177" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146176" i_stop="146039" i_length="138">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146038" g_stop="145862" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="288" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145470" g_stop="145349" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="410" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145193" g_stop="145141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="463" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145047" g_stop="144995" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="516" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144904" g_stop="144752" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="669" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144751" i_stop="144241" i_length="511">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144240" g_stop="144106" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="804" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E739938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146287" e_stop="146177"/>
          <exon e_start="146038" e_stop="145862"/>
          <exon e_start="145470" e_stop="145349"/>
          <exon e_start="145193" e_stop="145141"/>
          <exon e_start="145047" e_stop="144995"/>
          <exon e_start="144904" e_stop="144752"/>
          <exon e_start="144240" e_stop="144106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGGTATAATTTTTGTTTGATCTTTGAAAAGTTTCAAGCTTTTAGTAATTTTGTCATTGTTCATTAGTACCAACATGTTACTTGCAGATGATCTTGATGGTGAAATTGGTCATAAAGCATCACTAGATTGTGATTATTATGGGTTAAAAATGTAGACTAAATGTGTATAGACTTTTTGCTAATAACTTCTAACCAGATATAATTGCTCATTGGACATCTTGGAAACAGGGTAGTGTTGTTTTAGCATAATTAGTGTTCTTTTGCATTTTAGAAGTTATTCTCTAGTTGCAAACTGTTAGAATAATGGATTCTTGTTGGATCTAGCATAAATGTGAAGCTGATGCAATGGTAGACTCGATTTTATTTACCTGTGGTTTCTTTGTGTTTGTGGCAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAGGTATGTTCAAGACATCAAATTAGATACCCATTGTCCATTAGATTTAATTCTAGATTTCTTCTTTTTATGATAATAACATTTGTAGTTTTGTTTCTTAGTAGAGTTCATACCATTTTGAGATTGGGGCTAATGTACATTTGTTGCTTGACTTGCAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGTATTTTACTTGATCACAGTTAGATTTTTGGCTAGTGATTTCCATTTAGTCTAGTAGCTCATTATAAAATTTCGCTTTGATTGGTTTTTCTAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGTAAGTTTTCTTCCCTTGGAAGCAACAGTGAATTGTAAATGCATCTCCACGAGAGAATCTTACTGAGTTATTTGTTTTTTATCATTTCAGGATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGTACGTCTTAGGTATGATACAGTAAAGTGTCTCCATCATAACCTATGTTTTGTAGCTTAGGTATATAGATAAAGAAAAACAACTGGTGTAAAATGAATCACCAATGTTTGTCTTTGACTACTTTAGTTGGAAGAAACATTTATGGCAGGTTCCAATTATCATTGTGAACCTTTGTTTCCATTCTGGTGCATAGCTGAAAACACAGTCTGGAGGACATCTGCTGTCTAACAATCGAAGAAATCATCACATCGTTATGTTTATCCTTGTTTTAATGTCTGTTACTCTTCTATTTGCTGTAAGGTAAATTGTACACTTGTCCATTTTATATTGATTTTTGAAGGAAGCCTTTCCTACATATGGAACTAGAGAACTCCTAGGTGTAGCTTTTGACGATGATATAATAACAAGCTTCTACGTCTTTCACTGTATACATAGTACTATTAGGGAGATGTCAAAATTGAGTCAACTGTTATAATTCCATTTTTTGTAACTTCAGTTTGTGTGATCTTATCTTTCTTGTAGGGATGCATGTGTAGATTTCAAGGAACTTTACAAACAAAAGCACACAGATGGACAATGGATGGATGAGGTAGCTGCAATGAAGGCATGTACACCAATGGATCTATCGTACTTGGGAAATCAAGGTGTTATTCTTGC</genome_strand>
        <mrna_strand>ATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAG..........................................................................................................................................ATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAG...........................................................................................................................................................GAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAG.............................................................................................GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAA..........................................................................................GATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGTACGTCTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCATGTGTAGATTTCAAGGAACTTTACAAACAAAAGCACACAGATGGACAATGGATGGATGAGGTAGCTGCAATGAAGGCATGTACACCAATGGATCTATCGTACTTGGGAAATCAAGGTGTTATTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738492" ref_strand="+" ref_description="SGN-E738492 [LC13DD11]">
      <seq>ctcttgccattgcttcatcatttcttgctggcaatttttcttccatttacagttcaacaaaaagatttctcaaatgtcacgttcttgaacatgtctttgttctttacaaccatttcttttgctatttgagtttcattttttcaccattttctcccctttgtccactaagctttgctttagttaaacatggattccaagacccttcttgattatgcactgtttcagctcaccccaactagaacaagatgtgatcttgtggtgttttctgggggtaaaaatgagaaattggcatctgggttggtggaaccattcatttctcacttgaaatttgctaaagatcagattccaaaaggtgggtattcaatcactatgaggccaccttcaactcatgcctactggttcaccaaagccacattcctaagatttgtacgctttgttagtacacctgaaattcttgagaggtttatgcgattggaacgagagatctcacagatcgagagttccattcaatccaatgaatgctccaatggcaattcagaggaaggaagctcaccagctaatagtgagagcaccaggaaatcaaacgattcgttcaaggcaaaatctgaagttgaagaagctaataatgctgcacctaaagaaaactccaagattcaccttcaacgccacctggatacccgaaaggcattacttaggaaagagcaggccatggcttatgcgcgtgcaaccgttgcaggctttgagatagaccaattggatgatctcatacagtttgctaattcttttggtgcagtaacgtcttaggatgcatgtgtagatttcaaggaactttacaaacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146720" stop="143901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146421" g_stop="146177" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146176" i_stop="146039" i_length="138">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146038" g_stop="145862" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="422" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145470" g_stop="145349" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="544" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145193" g_stop="145141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="597" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145047" g_stop="144995" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="650" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144904" g_stop="144752" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="803" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144751" i_stop="144241" i_length="511">
            <donor d_prob="0.895" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144240" g_stop="144201" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="843" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E738492" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146421" e_stop="146177"/>
          <exon e_start="146038" e_stop="145862"/>
          <exon e_start="145470" e_stop="145349"/>
          <exon e_start="145193" e_stop="145141"/>
          <exon e_start="145047" e_stop="144995"/>
          <exon e_start="144904" e_stop="144752"/>
          <exon e_start="144240" e_stop="144201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCCATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGGTATAATTTTTGTTTGATCTTTGAAAAGTTTCAAGCTTTTAGTAATTTTGTCATTGTTCATTAGTACCAACATGTTACTTGCAGATGATCTTGATGGTGAAATTGGTCATAAAGCATCACTAGATTGTGATTATTATGGGTTAAAAATGTAGACTAAATGTGTATAGACTTTTTGCTAATAACTTCTAACCAGATATAATTGCTCATTGGACATCTTGGAAACAGGGTAGTGTTGTTTTAGCATAATTAGTGTTCTTTTGCATTTTAGAAGTTATTCTCTAGTTGCAAACTGTTAGAATAATGGATTCTTGTTGGATCTAGCATAAATGTGAAGCTGATGCAATGGTAGACTCGATTTTATTTACCTGTGGTTTCTTTGTGTTTGTGGCAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAGGTATGTTCAAGACATCAAATTAGATACCCATTGTCCATTAGATTTAATTCTAGATTTCTTCTTTTTATGATAATAACATTTGTAGTTTTGTTTCTTAGTAGAGTTCATACCATTTTGAGATTGGGGCTAATGTACATTTGTTGCTTGACTTGCAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGTATTTTACTTGATCACAGTTAGATTTTTGGCTAGTGATTTCCATTTAGTCTAGTAGCTCATTATAAAATTTCGCTTTGATTGGTTTTTCTAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGTAAGTTTTCTTCCCTTGGAAGCAACAGTGAATTGTAAATGCATCTCCACGAGAGAATCTTACTGAGTTATTTGTTTTTTATCATTTCAGGATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGT-ACGTCTTAGGTATGATACAGTAAAGTGTCTCCATCATAACCTATGTTTTGTAGCTTAGGTATATAGATAAAGAAAAACAACTGGTGTAAAATGAATCACCAATGTTTGTCTTTGACTACTTTAGTTGGAAGAAACATTTATGGCAGGTTCCAATTATCATTGTGAACCTTTGTTTCCATTCTGGTGCATAGCTGAAAACACAGTCTGGAGGACATCTGCTGTCTAACAATCGAAGAAATCATCACATCGTTATGTTTATCCTTGTTTTAATGTCTGTTACTCTTCTATTTGCTGTAAGGTAAATTGTACACTTGTCCATTTTATATTGATTTTTGAAGGAAGCCTTTCCTACATATGGAACTAGAGAACTCCTAGGTGTAGCTTTTGACGATGATATAATAACAAGCTTCTACGTCTTTCACTGTATACATAGTACTATTAGGGAGATGTCAAAATTGAGTCAACTGTTATAATTCCATTTTTTGTAACTTCAGTTTGTGTGATCTTATCTTTCTTGTAGGGATGCATGTGTAGATTTCAAGGAACTTTACAAACAAAAG</genome_strand>
        <mrna_strand>CTCTTGCCATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAG..........................................................................................................................................ATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAG...........................................................................................................................................................GAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAG.............................................................................................GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAA..........................................................................................GATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGTAACGTCTTA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCATGTGTAGATTTCAAGGAACTTTACAAACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735585" ref_strand="+" ref_description="SGN-E735585 [LC02AH04]">
      <seq>attcttgccattgcttcatcatttcttgctggaaatttttcttccatttacaggtcaacaaaaagatgtcgcaaatgtcacgaatcttgaacatgtctttgttctttacaaccatttcttttgctatttgagtttcattttttcaccattttctcccctttgtccactaagctttgctttacttaaacatggattccaagacccttcttgattatgcactgtttcagctcaccccaactacaacaagatgtgatcttgtggtgttttctgggggtaaaaatgagaaattggcatctgggttggtggaaccattcatttctcacttgaaatttgctaaagatcacattcctaaaggtgggtattcaatcactatgaggccaccttcaactcatgcctactggttcaccaaagccacattcctaagatttgtacgctttgttagtacacctgaaattcttgagaggtttatgcgattggaaccagagatctcacagatcgagttccattcaatccaatgaatgctccaatggcaattcgcaggaaggaagctcaccagctaataatgagagcaccacgaaatcaaacgattcgttcaaggcaaaatctgaagttgaagaagctaataatgctgcacctaaagaaaactccaagattcacctttaacgccacctggatacccgaaaggcattacttaggaaagagcaggccatggcttatgcgcgtgcaaccgttgcaggtcttgatatagaccaattgaatgatctcatacagtttgctaattcttttggtgcactacgtcttagggatgcatgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146722" stop="144445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146422" g_stop="146177" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146176" i_stop="146039" i_length="138">
            <donor d_prob="0.832" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146038" g_stop="145862" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="424" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145470" g_stop="145349" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="544" r_length="120" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145193" g_stop="145141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="597" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145047" g_stop="144995" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="650" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144904" g_stop="144752" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="803" r_length="153" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E735585" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146422" e_stop="146177"/>
          <exon e_start="146038" e_stop="145862"/>
          <exon e_start="145470" e_stop="145349"/>
          <exon e_start="145193" e_stop="145141"/>
          <exon e_start="145047" e_stop="144995"/>
          <exon e_start="144904" e_stop="144752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTGCCATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGT-TCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGGTATAATTTTTGTTTGATCTTTGAAAAGTTTCAAGCTTTTAGTAATTTTGTCATTGTTCATTAGTACCAACATGTTACTTGCAGATGATCTTGATGGTGAAATTGGTCATAAAGCATCACTAGATTGTGATTATTATGGGTTAAAAATGTAGACTAAATGTGTATAGACTTTTTGCTAATAACTTCTAACCAGATATAATTGCTCATTGGACATCTTGGAAACAGGGTAGTGTTGTTTTAGCATAATTAGTGTTCTTTTGCATTTTAGAAGTTATTCTCTAGTTGCAAACTGTTAGAATAATGGATTCTTGTTGGATCTAGCATAAATGTGAAGCTGATGCAATGGTAGACTCGATTTTATTTACCTGTGGTTTCTTTGTGTTTGTGGCAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAGGTATGTTCAAGACATCAAATTAGATACCCATTGTCCATTAGATTTAATTCTAGATTTCTTCTTTTTATGATAATAACATTTGTAGTTTTGTTTCTTAGTAGAGTTCATACCATTTTGAGATTGGGGCTAATGTACATTTGTTGCTTGACTTGCAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGTATTTTACTTGATCACAGTTAGATTTTTGGCTAGTGATTTCCATTTAGTCTAGTAGCTCATTATAAAATTTCGCTTTGATTGGTTTTTCTAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGTAAGTTTTCTTCCCTTGGAAGCAACAGTGAATTGTAAATGCATCTCCACGAGAGAATCTTACTGAGTTATTTGTTTTTTATCATTTCAGGATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGTACGTCTTAG</genome_strand>
        <mrna_strand>ATTCTTGCCATTGCTTCATCATTTCTTGCTGGAAATTTTTCTTCCATTTACAGGTCAACAAAAAGATGTCGCAAATGTCACGAATCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTACTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTACAACAAG..........................................................................................................................................ATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCACATTCCTAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACCAGAGATCTCACAGATC--GAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCGCAGGAAG...........................................................................................................................................................GAAGCTCACCAGCTAATAATGAGAGCACCACGAAATCAAACGATTCGTTCAAG.............................................................................................GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAA..........................................................................................GATTCACCTTTAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGTCTTGATATAGACCAATTGAATGATCTCATACAGTTTGCTAATTCTTTTGGTGCACTACGTCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736450" ref_strand="+" ref_description="SGN-E736450 [LC05DC04]">
      <seq>ccctcttaatgtgcaattcttgccattgcttcatcatttcttgctggcaatttttcttccatttacagttcaacaaaaagatttctcaaatgtcacgttcttgaacatgtctttgttctttacaaccatttcttttgctatttgagtttcattttttcaccattttctcccctttgtccactaagctttgctttagttaaacatggattccaagacccttcttgattatgcactgtttcagctcaccccaactagaacaagatgtgatcttgtggtgttttctgggggtaaaaatgagaaattggcatctgggttggtggaaccattcatttctcacttgaaatttgctaaagatcagattccaaaaggtgggtattcaatcactatgaggccaccttcaactcatgcctactggttcaccaaagccacattcctaagatttgtacgctttgttagtacacctgaaattcttgagaggtttatgcgattggaacgagagatctcacagatcgagagttccattcaatccaatgaatgctccaatggcaattcagaggaaggaagctcaccagctaatagtgagagcaccaggaaatcaaacgattcgttcaaggcaaaatctgaagttgaagaagctaataatgctgcacctaaagaanactccaagattcaccttcaacgccacctggatacccgaaaggcattacttaggaaagagcaggccatggcttatgcgcgtgcaaccgttgcaggctttgagatagacccattggatgatctcatacagtttgctaatttctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146735" stop="144468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146437" g_stop="146177" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146176" i_stop="146039" i_length="138">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146038" g_stop="145862" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="438" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145470" g_stop="145349" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="560" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145193" g_stop="145141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="613" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145047" g_stop="144995" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="666" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144904" g_stop="144767" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="804" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E736450" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146437" e_stop="146177"/>
          <exon e_start="146038" e_stop="145862"/>
          <exon e_start="145470" e_stop="145349"/>
          <exon e_start="145193" e_stop="145141"/>
          <exon e_start="145047" e_stop="144995"/>
          <exon e_start="144904" e_stop="144767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCCATGTGCAATTCTTGCCATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGGTATAATTTTTGTTTGATCTTTGAAAAGTTTCAAGCTTTTAGTAATTTTGTCATTGTTCATTAGTACCAACATGTTACTTGCAGATGATCTTGATGGTGAAATTGGTCATAAAGCATCACTAGATTGTGATTATTATGGGTTAAAAATGTAGACTAAATGTGTATAGACTTTTTGCTAATAACTTCTAACCAGATATAATTGCTCATTGGACATCTTGGAAACAGGGTAGTGTTGTTTTAGCATAATTAGTGTTCTTTTGCATTTTAGAAGTTATTCTCTAGTTGCAAACTGTTAGAATAATGGATTCTTGTTGGATCTAGCATAAATGTGAAGCTGATGCAATGGTAGACTCGATTTTATTTACCTGTGGTTTCTTTGTGTTTGTGGCAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAGGTATGTTCAAGACATCAAATTAGATACCCATTGTCCATTAGATTTAATTCTAGATTTCTTCTTTTTATGATAATAACATTTGTAGTTTTGTTTCTTAGTAGAGTTCATACCATTTTGAGATTGGGGCTAATGTACATTTGTTGCTTGACTTGCAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGTATTTTACTTGATCACAGTTAGATTTTTGGCTAGTGATTTCCATTTAGTCTAGTAGCTCATTATAAAATTTCGCTTTGATTGGTTTTTCTAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGTAAGTTTTCTTCCCTTGGAAGCAACAGTGAATTGTAAATGCATCTCCACGAGAGAATCTTACTGAGTTATTTGTTTTTTATCATTTCAGGATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGG</genome_strand>
        <mrna_strand>CCCTCTTAATGTGCAATTCTTGCCATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAG..........................................................................................................................................ATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAG...........................................................................................................................................................GAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAG.............................................................................................GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAANACTCCAA..........................................................................................GATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCCATTGGATGATCTCATACAGTTTGCTAATTTCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735492" ref_strand="+" ref_description="SGN-E735492 [LC01DC10]">
      <seq>cgtttatattgattatatatgaagttttttgctgcaaatttttcttccatttaccaaatcaaaaaaaaaaatttctcaaatgtcacaattcttgagcgtggggttgttctttacaaccatttcttttgctatttgactttcattttttcaccattttctcccctttgtccactaagctttgctttagttaaacatggattccaagacccttcttgattatgcactgtttcagctcaccccaactagaacaagatgtgatcttgtggtgttttctgggggtaaaaatgagaaattggcatctgggttggtggaaccattcatttctcacttgaaatttgctaaagatcagattccaaaaggtgggtattcaatcactatgaggccaccttcaactcatgcctactggttcaccaaagccacattcctaagatttgtacgctttgttagtacacctgaaattcttgagaggtttatgcgattggaacgagagatctcacagatcgagttccattcaatccaatgaatgctccaatggcaattcagaggaaggaagctcaccagctaatagtgagagcaccaggaaatcaaacgattcgttcaaggcaaaatctgaagttgaagaagctaataatgctgcacctaaagaaaactccaagattcacctttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146701" stop="144694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146369" g_stop="146177" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="252" r_length="194" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146176" i_stop="146039" i_length="138">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146038" g_stop="145862" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="429" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145470" g_stop="145349" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="549" r_length="120" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145193" g_stop="145141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="602" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145047" g_stop="144995" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="655" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144904" g_stop="144892" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="668" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E735492" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146369" e_stop="146177"/>
          <exon e_start="146038" e_stop="145862"/>
          <exon e_start="145470" e_stop="145349"/>
          <exon e_start="145193" e_stop="145141"/>
          <exon e_start="145047" e_stop="144995"/>
          <exon e_start="144904" e_stop="144892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAAAAAGATTTCTCAAATGTCAC-GTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGGTATAATTTTTGTTTGATCTTTGAAAAGTTTCAAGCTTTTAGTAATTTTGTCATTGTTCATTAGTACCAACATGTTACTTGCAGATGATCTTGATGGTGAAATTGGTCATAAAGCATCACTAGATTGTGATTATTATGGGTTAAAAATGTAGACTAAATGTGTATAGACTTTTTGCTAATAACTTCTAACCAGATATAATTGCTCATTGGACATCTTGGAAACAGGGTAGTGTTGTTTTAGCATAATTAGTGTTCTTTTGCATTTTAGAAGTTATTCTCTAGTTGCAAACTGTTAGAATAATGGATTCTTGTTGGATCTAGCATAAATGTGAAGCTGATGCAATGGTAGACTCGATTTTATTTACCTGTGGTTTCTTTGTGTTTGTGGCAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAGGTATGTTCAAGACATCAAATTAGATACCCATTGTCCATTAGATTTAATTCTAGATTTCTTCTTTTTATGATAATAACATTTGTAGTTTTGTTTCTTAGTAGAGTTCATACCATTTTGAGATTGGGGCTAATGTACATTTGTTGCTTGACTTGCAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGTATTTTACTTGATCACAGTTAGATTTTTGGCTAGTGATTTCCATTTAGTCTAGTAGCTCATTATAAAATTTCGCTTTGATTGGTTTTTCTAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGTAAGTTTTCTTCCCTTGGAAGCAACAGTGAATTGTAAATGCATCTCCACGAGAGAATCTTACTGAGTTATTTGTTTTTTATCATTTCAGGATTCACCTTCAA</genome_strand>
        <mrna_strand>TCAAAAAAAAAAATTTCTCAAATGTCACAATTCTTGAGCGTGGGGTTGTTCTTTACAACCATTTCTTTTGCTATTTGACTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAG..........................................................................................................................................ATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATC--GAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAG...........................................................................................................................................................GAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAG.............................................................................................GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAA..........................................................................................GATTCACCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738248" ref_strand="+" ref_description="SGN-E738248 [LC12DG10]">
      <seq>atttttcttccatttacagttcaacaaaaagatttctcaaatgtcacgttcttgaacatgtctttgttctttacaaccatttcttttgctatttgagtttcattttttcaccattttctcccctttgtccactaagctttgctttagttaaacatggattccaagacccttcttgattatgcactgtttcagctcaccccaactagaacaaggttggttttgctttaaacaccccccccccctctccacacaaagttggggttaactgtttttttagctttgtattgtgatggaaactgataaaaatttgattttttgtgtgtttttgatttgggggtattgaaaaaaatgtgatcttgtggggttttcggggggtaaaaatgaaaaattggcatctgggttgggggaaccattcatttctcacttgaaatttgctaaaaatcaaattccaaaaggtgggtattcaatcactatgaggccaccttcaactcatgcctactggttcaccaaagccacattcctaaaatttgtacgctttgttagtacacctgaaattcttgaaaggtttatgcgattggaacgagagatctcacagatcgagagttccattcaatccaatgaatgctccaatggcaattcaaaggaaggaagctcaccagctaatagtgagagcaccaggaaatcaaacgattcgttcaaggcaaaatctgaagttgaagaagctaataatgctgcacctaaagaaaactccaagattcaccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146688" stop="144694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146388" g_stop="145862" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145470" g_stop="145349" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="647" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145193" g_stop="145141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="700" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145047" g_stop="144995" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="753" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144904" g_stop="144893" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="765" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E738248" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146388" e_stop="145862"/>
          <exon e_start="145470" e_stop="145349"/>
          <exon e_start="145193" e_stop="145141"/>
          <exon e_start="145047" e_stop="144995"/>
          <exon e_start="144904" e_stop="144893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGGTATAATTTTTGTTTGATCTTTGAAAAGTTTCAAGCTTTTAGTAATTTTGTCATTGTTCATTAGTACCAACATGTTACTTGCAGATGATCTTGATGGTGAAATTGGTCATAAAGCATCACTAGATTGTGATTATTATGGGTTAAAAATGTAGACTAAATGTGTATAGACTTTTTGCTAATAACTTCTAACCAGATATAATTGCTCATTGGACATCTTGGAAACAGGGTAGTGTTGTTTTAGCATAATTAGTGTTCTTTTGCATTTTAGAAGTTATTCTCTAGTTGCAAACTGTTAGAATAATGGATTCTTGTTGGATCTAGCATAAATGTGAAGCTGATGCAATGGTAGACTCGATTTTATTTACCTGTGGTTTCTTTGTGTTTGTGGCAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAGGTATGTTCAAGACATCAAATTAGATACCCATTGTCCATTAGATTTAATTCTAGATTTCTTCTTTTTATGATAATAACATTTGTAGTTTTGTTTCTTAGTAGAGTTCATACCATTTTGAGATTGGGGCTAATGTACATTTGTTGCTTGACTTGCAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGTATTTTACTTGATCACAGTTAGATTTTTGGCTAGTGATTTCCATTTAGTCTAGTAGCTCATTATAAAATTTCGCTTTGATTGGTTTTTCTAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGTAAGTTTTCTTCCCTTGGAAGCAACAGTGAATTGTAAATGCATCTCCACGAGAGAATCTTACTGAGTTATTTGTTTTTTATCATTTCAGGATTCACCTTCA</genome_strand>
        <mrna_strand>ATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACA--CCCCCCCCCCCTCTCCACACAAAGTTGGGGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAAATTTGATTTTTTGTGTGTTTTTGATTTGGGGGTATTGAAAAAAATGTGATCTTGTGGGGTTTTCGGGGGGTAAAAATGAAAAATTGGCATCTGGGTTGGGGGAACCATTCATTTCTCACTTGAAATTTGCTAAAAATCAAATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAA.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAAAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAAAGGAAG...........................................................................................................................................................GAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAG.............................................................................................GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAA..........................................................................................GATTCACCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737439" ref_strand="+" ref_description="SGN-E737439 [LC09DD05]">
      <seq>ccctttttgaaattgcttcatcatttcttgctggcaatttttcttccatttacagttcaacaaaaagatttctcaaatgtcacgttcttgaacatgtctttgttctttacaaccatttcttttgctatttgagtttcattttttcaccattttctcccctttgtccactaagctttgctttagttaaacatggattccaagacccttcttgattatgcactgtttcagctcaccccaactagaacaagatgtgatcttgtggtgttttctgggggtaaaaatgagaaattggcatctgggttggtggaaccattcatttctcacttgaaatttgctaaagatcagattccaaaaggtgggtattcaatcactatgaggccaccttccactcatgcctattggttcaccaaagccacattcctatgatttgtacgctttgttaatacacctgaaattcttgagaggtttatgcgattggaacgataaatctcacaaagcgagagttccattcaatccaatgaatgctccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146721" stop="145066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146424" g_stop="146177" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146176" i_stop="146039" i_length="138">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146038" g_stop="145862" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="425" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145470" g_stop="145366" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="530" r_length="105" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E737439" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146424" e_stop="146177"/>
          <exon e_start="146038" e_stop="145862"/>
          <exon e_start="145470" e_stop="145366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTTGCCATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGGTATAATTTTTGTTTGATCTTTGAAAAGTTTCAAGCTTTTAGTAATTTTGTCATTGTTCATTAGTACCAACATGTTACTTGCAGATGATCTTGATGGTGAAATTGGTCATAAAGCATCACTAGATTGTGATTATTATGGGTTAAAAATGTAGACTAAATGTGTATAGACTTTTTGCTAATAACTTCTAACCAGATATAATTGCTCATTGGACATCTTGGAAACAGGGTAGTGTTGTTTTAGCATAATTAGTGTTCTTTTGCATTTTAGAAGTTATTCTCTAGTTGCAAACTGTTAGAATAATGGATTCTTGTTGGATCTAGCATAAATGTGAAGCTGATGCAATGGTAGACTCGATTTTATTTACCTGTGGTTTCTTTGTGTTTGTGGCAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAA</genome_strand>
        <mrna_strand>CCCTTTTTGAAATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAG..........................................................................................................................................ATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCCACTCATGCCTATTGGTTCACCAAAGCCACATTCCTATG.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACGCTTTGTTAATACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGATAAATCTCACAAAGCGAGAGTTCCATTCAATCCAATGAATGCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367324" ref_strand="+" ref_description="SGN-E367324 [cLPT-5-P20]">
      <seq>attgcttcatcatttcttgctggcaatttttcttccatttacagttcaacaaaaagatttctcaaatgtcacgttcttgaacatgtctttgttctttacaaccatttcttttgctatttgaatttcattttttccccattatctcccctttgtccactaagctttgctttagttaaacatggattccaagacccttcttgattatgcactgtttcagctcaccccaactagaacaagatgtgatcttgtggtgttttctgggggtaaaaatgagaaattggcatctgggttggtggaaccattcatttctcacttgaaatttgctaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="146713" stop="145645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146413" g_stop="146177" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146176" i_stop="146039" i_length="138">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146038" g_stop="145945" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="331" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E367324" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146413" e_stop="146177"/>
          <exon e_start="146038" e_stop="145945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGAT</genome_strand>
        <mrna_strand>ATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAATTTCATTTTTTCCCCATTATCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAG..........................................................................................................................................ATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="162101" stop="161072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161791" g_stop="161372" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="450" r_length="421" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161791" e_stop="161372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAGAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTATGTATATAGTGAGAGAGGCGAGCAAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAGAGAGACG-CTGGCAAATTTTAGCTAACGTTTGCTATGGAGCACAATTATATCAAACCCTAGCTATTCCATTTATTTTAGGTTATTAG</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="162101" stop="161224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161791" g_stop="161498" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="325" r_length="295" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161791" e_stop="161498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAGAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTATGTATATAGTGAGAGAG</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0127N23-nDHhj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0127N23.1" temp_strand="-" temp_description="C02SLm0127N23.1  AC232778.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0127N23 sequenced_by:kribb upload_account_name:korea">
        <position start="162101" stop="161224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161791" g_stop="161514" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="308" r_length="278" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0127N23.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0127N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161791" e_stop="161514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAGAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTAT</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>175</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8979" PGL_stop="10167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8979" e_stop="9128"/>
            <exon e_start="9313" e_stop="9425"/>
            <exon e_start="9684" e_stop="9894"/>
            <exon e_start="9976" e_stop="10167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.804" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8979" e_stop="9128" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.804" acc_prob="0.960">
            <gDNA_intron_boundary i_start="9129" i_stop="9312" i_length="184"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9313" e_stop="9425" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9426" i_stop="9683" i_length="258"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9684" e_stop="9894" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9895" i_stop="9975" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="9976" e_stop="10167" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8979" stop="9128"/>
              <exon start="9313" stop="9425"/>
              <exon start="9684" stop="9894"/>
              <exon start="9976" stop="9981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8980" stop="9128"/>
              <exon start="9313" stop="9425"/>
              <exon start="9684" stop="9894"/>
              <exon start="9976" stop="10167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8980" stop="9128"/>
              <exon start="9313" stop="9425"/>
              <exon start="9684" stop="9894"/>
              <exon start="9976" stop="10094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG : GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAG : GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTG : GTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAAGGATTATACACCAAAAATTGGAGATTTTGGGCTTGCTAAACTTTTCC</gDNA_template>
            <first_frame> V  Y  W  W  *  R  L  T  F  H  L  L  I  K  R  H  Y  Q  L  I  *  T  R  *  L  T  *  V  V  A  S  L  A  T  G  K  R  V  M  I  S  F  T  M  I  Q  E  M  Q  E  :  V  T  P  L  Q  A  Q  R  I  F  H  L  M  N  *  D  *  Q  P  T  T  S  I  K  L  I  K  *  G  E  A  V  L  A  Q  Y  T  R :   E  L  *  N  K  E  K  M  L  L  *  R  H  *  Q  Q  N  Q  G  R  V  C  G  S  F  *  Q  K  L  R  Q  Y  Q  M  S  N  I  Q  I  *  L  R  *  L  D  A  V  L  M  E  I  T  G  F  W  S  M  N  I  *  K  I  E  A  L  I  G  H  C  L  :  V  Q  G  L  V  L  S  *  N  G  K  K  G  L  L  F  A  W  V  L  L  E  V  L  H  I  Y  M  K  N  *  C  H  I  *  C  T  G  I  *  K  L  V  I  F  C  L  T  R  I  I  H  Q  K  L  E  I  L  G  L  L  N  F  S </first_frame>
            <second_frame>  C  I  G  G  E  G  *  H  F  I  Y  S  S  K  G  T  I  N  *  F  R  H  A  N  *  H  E  L  L  L  L  W  R  P  E  K  G  S  *  S  R  S  P  *  Y  K  R  C  R  R :   *  L  H  C  K  H  K  E  F  F  I  *  *  I  K  I  S  N  Q  Q  L  P  S  N  *  *  N  R  A  R  R  F  W  H  S  I  Q   : G  N  S  K  T  R  K  R  C  C  C  E  D  T  S  S  R  I  K  A  G  F  A  G  V  F  D  R  N  *  D  N  I  K  C  Q  T  S  K  S  S  *  D  N  W  M  L  C  *  W  K  *  P  D  F  G  L  *  I  F  R  K  *  K  P  *  S  G  T  V  W :   F  K  D  *  Y  *  V  R  M  G  K  K  D  Y  Y  L  L  G  Y  C  S  R  S  C  I  S  T  *  R  T  S  A  T  Y  S  A  Q  G  Y  K  S  *  *  Y  S  A  *  Q  G  L  Y  T  K  N  W  R  F  W  A  C  *  T  F   </second_frame>
            <third_frame>   V  L  V  V  K  A  N  I  S  F  T  H  Q  K  A  L  S  I  D  L  D  T  L  I  D  M  S  C  C  F  F  G  D  R  K  K  G  H  D  L  V  H  H  D  T  R  D  A  G   : G  D  S  I  A  S  T  K  N  F  S  F  N  E  L  R  L  A  T  N  N  F  H  Q  I  N  K  I  G  R  G  G  F  G  T  V  Y  K  :  G  T  L  K  Q  G  K  D  V  A  V  K  T  L  A  A  E  S  R  Q  G  L  R  E  F  L  T  E  I  E  T  I  S  N  V  K  H  P  N  L  V  E  I  I  G  C  C  A  D  G  N  N  R  I  L  V  Y  E  Y  L  E  N  R  S  L  D  R  A  L  F   : G  S  R  T  S  I  K  L  E  W  E  K  R  T  T  I  C  L  G  T  A  R  G  L  A  Y  L  H  E  E  L  V  P  H  I  V  H  R  D  I  K  A  S  N  I  L  L  D  K  D  Y  T  P  K  I  G  D  F  G  L  A  K  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8981" stop="9128"/>
                    <exon start="9313" stop="9425"/>
                    <exon start="9684" stop="9894"/>
                    <exon start="9976" stop="10166"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLVVKANISFTHQKALSIDLDTLIDMSCCFFGDRKKGHDLVHHDTRDAGGDSIASTKNFSFNELRLATNNFHQINKIGRGGFGTVYKGTLKQGKDVAVKTLAAESRQGLREFLTEIETISNVKHPNLVEIIGCCADGNNRILVYEYLENRSLDRALFGSRTSIKLEWEKRTTICLGTARGLAYLHEELVPHIVHRDIKASNILLDKDYTPKIGDFGLAKLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12150" PGL_stop="13063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12150" e_stop="12952"/>
            <exon e_start="13020" e_stop="13063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.591"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="12150" e_stop="12952" e_length="803"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12953" i_stop="13019" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="0.591">
            <gDNA_exon_boundary e_start="13020" e_stop="13063" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12150" stop="12863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="12822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="12709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12298" stop="12903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12298" stop="12747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12298" stop="12735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12298" stop="12595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12340" stop="12952"/>
              <exon start="13020" stop="13063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12411" stop="12921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAAATATTCTTTCAAAATAATATTTTATCAAGAT : CAAAAATATAATTGCAAAATCAATAATCTAAATAAATATTAATA</gDNA_template>
            <first_frame> D  E  E  L  D  E  F  P  E  R  E  V  V  R  Y  I  K  T  A  L  F  C  T  Q  A  N  A  N  R  R  P  M  M  S  Q  V  I  E  M  L  S  R  D  I  Q  L  N  E  K  E  L  T  P  P  G  F  F  E  D  S  E  G  S  V  Q  S  R  L  K  I  S  R  G  N  T  S  Q  Q  S  S  V  H  I  T  I  T  Q  V  T  P  R  *  S  S  L  V  T  A  *  S  C  T  *  I  I  L  P  A  T  L  F  C  S  L  R  *  R  L  L  E  I  F  *  E  L  S  L  Q  T  C  I  L  W  I  F  N  K  K  G  *  L  T  F  S  N  L  V  F  S  N  L  L  K  Y  F  *  N  L  H  R  K  V  *  T  F  L  Q  V  *  F  R  H  M  K  Q  N  *  V  C  K  F  K  I  F  *  K  I  S  N  K  R  H  L  S  S  Q  K  I  E  I  A  G  L  M  I  S  E  G  V  V  K  V  P  R  Q  N  S  S  N  L  C  V  L  F  L  Y  D  K  H  F  F  G  S  C  F  L  P  Y  Y  F  Y  S  D  R  Y  Y  I  K  P  I  T  L  Y  S  F  K  *  N  I  L  S  K  *  Y  F  I  K  I :   K  N  I  I  A  K  S  I  I  *  I  N  I  N  </first_frame>
            <second_frame>  M  K  N  *  M  N  S  R  R  E  K  S  S  G  T  S  R  R  L  C  F  A  H  K  Q  M  Q  T  E  D  Q  *  *  A  R  L  L  R  C  F  Q  E  I  S  S  *  M  R  K  N  L  H  H  L  V  S  S  K  I  L  K  E  A  C  N  Q  D  *  R  Y  L  E  V  I  L  V  N  K  V  L  Y  T  S  Q  L  L  R  *  P  L  D  S  H  P  W  *  P  P  D  P  A  L  E  S  F  F  L  R  H  C  F  A  A  *  D  D  V  C  L  R  F  S  R  N  *  V  C  K  L  V  Y  Y  G  F  L  T  K  K  D  S  *  L  F  Q  I  *  F  F  Q  I  C  *  N  I  S  E  I  F  I  E  K  F  E  P  F  C  K  C  S  S  D  T  *  S  K  I  E  F  A  N  S  K  F  F  E  K  F  Q  T  N  A  I  *  V  H  R  R  L  K  L  Q  D  *  *  Y  R  K  A  L  S  K  F  L  D  K  I  P  A  I  Y  V  Y  Y  F  C  M  T  N  I  F  L  D  P  V  F  Y  L  I  I  F  I  L  T  G  I  I  L  N  R  *  H  Y  I  V  S  S  K  I  F  F  Q  N  N  I  L  S  R   : S  K  I  *  L  Q  N  Q  *  S  K  *  I  L  I </second_frame>
            <third_frame>   *  R  T  R  *  I  P  G  E  R  S  R  Q  V  H  Q  D  G  S  V  L  H  T  S  K  C  K  Q  K  T  N  D  E  P  G  Y  *  D  A  F  K  R  Y  P  A  K  *  E  R  T  Y  T  T  W  F  L  R  R  F  *  R  K  R  A  I  K  I  E  D  I  *  R  *  Y  *  S  T  K  F  C  T  H  H  N  Y  S  G  D  P  *  I  V  I  L  G  D  R  L  I  L  H  L  N  H  S  S  C  D  I  V  L  Q  L  K  M  T  F  A  *  D  F  L  G  I  E  F  A  N  L  Y  I  M  D  F  *  Q  K  R  I  A  N  F  F  K  S  S  F  F  K  F  V  E  I  F  L  K  S  S  *  K  S  L  N  L  S  A  S  V  V  Q  T  H  E  A  K  L  S  L  Q  I  Q  N  F  L  K  N  F  K  Q  T  P  S  K  F  T  E  D  *  N  C  R  I  N  D  I  G  R  R  C  Q  S  S  *  T  K  F  Q  Q  F  M  C  I  I  F  V  *  Q  T  F  F  W  I  L  F  F  T  L  L  F  L  F  *  Q  V  L  Y  *  T  D  N  I  I  *  F  Q  V  K  Y  S  F  K  I  I  F  Y  Q  D  :  Q  K  Y  N  C  K  I  N  N  L  N  K  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12150" stop="12425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEELDEFPEREVVRYIKTALFCTQANANRRPMMSQVIEMLSRDIQLNEKELTPPGFFEDSEGSVQSRLKISRGNTSQQSSVHITITQVTPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12705" stop="12920"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISNKRHLSSQKIEIAGLMISEGVVKVPRQNSSNLCVLFLYDKHFFGSCFLPYYFYSDRYYIKPITLYSFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13055" PGL_stop="12298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13055" e_stop="13015"/>
            <exon e_start="12954" e_stop="12298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.610"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.610">
            <gDNA_exon_boundary e_start="13055" e_stop="13015" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13014" i_stop="12955" i_length="60"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12954" e_stop="12298" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13055" stop="13015"/>
              <exon start="12954" stop="12298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369484" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTAT : TTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAATCCATAATATACAAGTTTGCAAACTCAATTCCTAGAAAATCTCAAGCAAACGTCATCTTAAGCTGCAAAACAATGTCGCAGGAAGAATGATTCAAGTGCAGGATCAGGCGGTCACCAAGGATGACTATCTAGGGGTCACCTGAGTAATTGTGATGTGTACAGAACTTTGTTGACTAGTATTACCTCTAGATATCTTCAATCTTGATTGCACGCTTCCTTCAGAATCTTCGAAGAAACCAGGTGGTGTAAGTT</gDNA_template>
            <first_frame> F  I  *  I  I  D  F  A  I  I  F  L  L  I :   Y  L  D  K  I  L  F  *  K  N  I  L  L  E  T  I  *  C  Y  R  F  N  I  I  P  V  R  I  K  I  I  R  *  K  T  G  S  K  K  M  F  V  I  Q  K  *  Y  T  *  I  A  G  I  L  S  R  N  F  D  N  A  F  R  Y  H  *  S  C  N  F  N  L  L  *  T  *  M  A  F  V  *  N  F  S  K  N  F  E  F  A  N  S  I  L  L  H  V  S  E  L  H  L  Q  K  G  S  N  F  S  M  K  I  S  E  I  F  Q  Q  I  *  K  N  *  I  *  K  S  *  L  S  F  F  V  K  N  P  *  Y  T  S  L  Q  T  Q  F  L  E  N  L  K  Q  T  S  S  *  A  A  K  Q  C  R  R  K  N  D  S  S  A  G  S  G  G  H  Q  G  *  L  S  R  G  H  L  S  N  C  D  V  Y  R  T  L  L  T  S  I  T  S  R  Y  L  Q  S  *  L  H  A  S  F  R  I  F  E  E  T  R  W  C  K   </first_frame>
            <second_frame>  L  F  R  L  L  I  L  Q  L  Y  F  C  L   : F  I  L  I  K  Y  Y  F  E  R  I  F  Y  L  K  L  Y  N  V  I  G  L  I  *  Y  L  S  E  *  K  *  *  G  K  K  Q  D  P  K  K  C  L  S  Y  K  N  N  T  H  K  L  L  E  F  C  L  G  T  L  T  T  P  S  D  I  I  N  P  A  I  S  I  F  C  E  L  R  W  R  L  F  E  I  F  Q  K  I  L  N  L  Q  T  Q  F  C  F  M  C  L  N  Y  T  C  R  K  V  Q  T  F  L  *  R  F  Q  K  Y  F  N  K  F  E  K  T  R  F  E  K  V  S  Y  P  F  L  L  K  I  H  N  I  Q  V  C  K  L  N  S  *  K  I  S  S  K  R  H  L  K  L  Q  N  N  V  A  G  R  M  I  Q  V  Q  D  Q  A  V  T  K  D  D  Y  L  G  V  T  *  V  I  V  M  C  T  E  L  C  *  L  V  L  P  L  D  I  F  N  L  D  C  T  L  P  S  E  S  S  K  K  P  G  G  V  S  </second_frame>
            <third_frame>   Y  L  D  Y  *  F  C  N  Y  I  F  A  Y  :  L  S  *  *  N  I  I  L  K  E  Y  F  T  *  N  Y  I  M  L  S  V  *  Y  N  T  C  Q  N  K  N  N  K  V  K  N  R  I  Q  K  N  V  C  H  T  K  I  I  H  I  N  C  W  N  F  V  *  E  L  *  Q  R  L  P  I  S  L  I  L  Q  F  Q  S  S  V  N  L  D  G  V  C  L  K  F  F  K  K  F  *  I  C  K  L  N  F  A  S  C  V  *  T  T  L  A  E  R  F  K  L  F  Y  E  D  F  R  N  I  S  T  N  L  K  K  L  D  L  K  K  L  A  I  L  F  C  *  K  S  I  I  Y  K  F  A  N  S  I  P  R  K  S  Q  A  N  V  I  L  S  C  K  T  M  S  Q  E  E  *  F  K  C  R  I  R  R  S  P  R  M  T  I  *  G  S  P  E  *  L  *  C  V  Q  N  F  V  D  *  Y  Y  L  *  I  S  S  I  L  I  A  R  F  L  Q  N  L  R  R  N  Q  V  V  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12859" stop="12623"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKQDPKKCLSYKNNTHKLLEFCLGTLTTPSDIINPAISIFCELRWRLFEIFQKILNLQTQFCFMCLNYTCRKVQTFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13055" e_stop="13013"/>
            <exon e_start="12954" e_stop="12550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.628"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.628">
            <gDNA_exon_boundary e_start="13055" e_stop="13013" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13012" i_stop="12955" i_length="58"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="12954" e_stop="12550" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13055" stop="13013"/>
              <exon start="12954" stop="12550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392482" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTATTT : TTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAA</gDNA_template>
            <first_frame> F  I  *  I  I  D  F  A  I  I  F  L  L  I   : F  I  L  I  K  Y  Y  F  E  R  I  F  Y  L  K  L  Y  N  V  I  G  L  I  *  Y  L  S  E  *  K  *  *  G  K  K  Q  D  P  K  K  C  L  S  Y  K  N  N  T  H  K  L  L  E  F  C  L  G  T  L  T  T  P  S  D  I  I  N  P  A  I  S  I  F  C  E  L  R  W  R  L  F  E  I  F  Q  K  I  L  N  L  Q  T  Q  F  C  F  M  C  L  N  Y  T  C  R  K  V  Q  T  F  L  *  R  F  Q  K  Y  F  N  K  F  E  K  T  R  F  E  K  V  S  Y  P  F  L  L  K  </first_frame>
            <second_frame>  L  F  R  L  L  I  L  Q  L  Y  F  C  L  F  :  L  S  *  *  N  I  I  L  K  E  Y  F  T  *  N  Y  I  M  L  S  V  *  Y  N  T  C  Q  N  K  N  N  K  V  K  N  R  I  Q  K  N  V  C  H  T  K  I  I  H  I  N  C  W  N  F  V  *  E  L  *  Q  R  L  P  I  S  L  I  L  Q  F  Q  S  S  V  N  L  D  G  V  C  L  K  F  F  K  K  F  *  I  C  K  L  N  F  A  S  C  V  *  T  T  L  A  E  R  F  K  L  F  Y  E  D  F  R  N  I  S  T  N  L  K  K  L  D  L  K  K  L  A  I  L  F  C  *  K </second_frame>
            <third_frame>   Y  L  D  Y  *  F  C  N  Y  I  F  A  Y  F :   Y  L  D  K  I  L  F  *  K  N  I  L  L  E  T  I  *  C  Y  R  F  N  I  I  P  V  R  I  K  I  I  R  *  K  T  G  S  K  K  M  F  V  I  Q  K  *  Y  T  *  I  A  G  I  L  S  R  N  F  D  N  A  F  R  Y  H  *  S  C  N  F  N  L  L  *  T  *  M  A  F  V  *  N  F  S  K  N  F  E  F  A  N  S  I  L  L  H  V  S  E  L  H  L  Q  K  G  S  N  F  S  M  K  I  S  E  I  F  Q  Q  I  *  K  N  *  I  *  K  S  *  L  S  F  F  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12859" stop="12623"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKQDPKKCLSYKNNTHKLLEFCLGTLTTPSDIINPAISIFCELRWRLFEIFQKILNLQTQFCFMCLNYTCRKVQTFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17353" PGL_stop="13509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17353" e_stop="16884"/>
            <exon e_start="14488" e_stop="14335"/>
            <exon e_start="14201" e_stop="13509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.554" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17353" e_stop="16884" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16883" i_stop="14489" i_length="2395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14488" e_stop="14335" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.554">
            <gDNA_intron_boundary i_start="14334" i_stop="14202" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14201" e_stop="13509" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17353" stop="16888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17329" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="14046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17329" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="14176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17329" stop="16884"/>
              <exon start="14488" stop="14391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17322" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="13878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17322" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="13947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17322" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="13986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17316" stop="16884"/>
              <exon start="14488" stop="14448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17308" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="13990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17307" stop="16915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17305" stop="16884"/>
              <exon start="14488" stop="14438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17302" stop="16884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17288" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="13928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17284" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="14167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17259" stop="16938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16929" stop="16884"/>
              <exon start="14488" stop="14335"/>
              <exon start="14201" stop="13594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14403" stop="14335"/>
              <exon start="14201" stop="13610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13967" stop="13636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13950" stop="13627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG : GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG : CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</gDNA_template>
            <first_frame> Y  *  R  E  G  K  F  E  R  F  C  R  L  *  R  E  K  G  E  K  R  R  E  M  A  A  F  D  A  F  S  M  D  G  E  V  P  A  P  A  A  S  T  P  F  D  D  G  D  Y  D  G  S  Y  T  A  F  S  N  A  D  T  P  P  F  H  G  S  G  G  F  G  G  D  Y  D  E  V  T  V  E  H  V  S  H  T  V  D  S  P  D  P  Y  G  Y  G  S  D  S  F  P  N  Q  T  G  S  F  G  A  S  A  A  P  I  S  N  G  N  G  K  P  Y  D  L  G  E  D  T  E  G  I  F  S  S  D  G  P  V  L  P  P  P  N  E  M  R  E  E  G  F  A  L  R  E  W  R  R :   Q  N  A  I  R  L  E  E  K  E  K  R  E  K  E  I  R  S  Q  I  I  E  E  G  E  E  Y  K  K  A  F  Y  E  K  R  N  L  S  I  E  T  N  K  T  T  N  R  E  K  E  K  :  L  Y  L  T  S  Q  E  K  F  H  K  E  A  D  K  Q  Y  W  K  A  I  A  E  L  I  P  K  E  V  P  S  I  E  K  K  G  R  K  K  D  Q  D  K  K  P  S  I  T  V  V  Q  G  P  K  P  G  K  P  T  D  L  S  R  M  R  H  I  L  L  K  L  K  H  T  P  P  P  H  M  I  P  P  P  P  A  P  A  K  D  A  K  V  G  K  D  G  K  D  T  K  D  A  K  A  G  K  D  G  K  D  T  K  N  A  K  D  T  V  A  P  N  G  T  P  D  A  P  T  S  D  A  K  V  T  Q  T  S  E  E  P  T  A  A  E  *  S  A  F  S  L  I  S  L  V  F  D  V  V  M  C  Y  P  L  T  Y  T  L  F  S  L  *  I  L  Y  H  L  L  Y  F  V  S  F  Y  Y  Y  S  I  G  S  *  Q  T  L  A  A  F  C  C  I  G  C  L  S  L  F  I  V  L  F  R  S  F  L  N  W  R  *  I  H  Y  F  L  V  Y  R  N  L  I  F  L  E </first_frame>
            <second_frame>  T  R  E  K  E  N  S  R  D  F  A  D  C  R  E  R  K  E  R  K  E  G  K  W  L  H  L  M  R  S  V  W  T  V  R  Y  R  H  R  R  H  Q  H  R  S  M  M  E  T  T  T  A  L  T  P  P  S  P  T  P  I  R  R  R  F  T  A  L  E  D  S  V  E  T  M  T  K  *  R  W  N  T  Y  L  I  P  S  I  V  P  I  P  T  D  T  G  Q  I  R  F  Q  T  K  P  V  H  L  E  L  L  Q  L  R  S  R  T  G  M  V  S  P  T  I  *  V  K  I  L  R  E  F  S  V  P  M  D  P  F  S  P  L  R  M  K  C  V  R  K  V  L  R  S  A  N  G  E   : G  K  M  L  S  V  L  R  R  R  R  R  E  K  R  K  S  E  A  K  L  L  R  K  V  K  N  I  R  K  H  S  M  R  K  E  I  S  V  L  R  P  T  R  Q  L  T  A  R  K  K  S :   C  T  *  L  V  K  R  S  S  I  K  K  L  I  S  N  I  G  K  P  *  Q  S  S  F  P  R  R  C  P  A  L  R  R  R  E  G  R  R  I  K  I  R  S  H  P  S  Q  S  S  K  G  L  N  L  G  N  L  P  I  F  Q  G  C  A  T  Y  C  *  S  L  S  T  P  H  H  L  T  *  Y  H  P  L  L  P  L  P  R  T  P  K  L  G  R  M  E  K  T  P  R  M  P  K  L  E  R  T  E  K  T  P  R  M  L  K  I  L  *  H  Q  M  G  L  Q  M  H  L  P  V  M  P  K  L  L  R  H  Q  K  N  L  L  L  Q  N  D  R  L  L  A  *  F  L  *  S  L  M  L  *  C  V  I  L  L  H  I  L  F  F  L  Y  E  F  C  I  I  Y  Y  I  L  C  H  S  T  T  I  L  L  V  R  D  R  H  *  L  H  F  V  A  L  D  V  *  V  C  L  L  Y  Y  L  G  P  F  L  T  G  G  E  F  I  I  F  L  F  T  E  T  L  Y  F  L   </second_frame>
            <third_frame>   L  E  R  R  K  I  R  E  I  L  Q  T  V  E  R  E  R  R  E  K  K  G  N  G  C  I  *  C  V  Q  Y  G  R  *  G  T  G  T  G  G  I  N  T  V  R  *  W  R  L  R  R  L  L  H  R  L  L  Q  R  R  Y  A  A  V  S  R  L  W  R  I  R  W  R  L  *  R  S  N  G  G  T  R  I  S  Y  R  R  *  S  R  S  L  R  I  R  V  R  F  V  S  K  P  N  R  F  I  W  S  F  C  S  S  D  L  E  R  E  W  *  A  L  R  S  R  *  R  Y  *  G  N  F  Q  F  R  W  T  R  S  P  P  S  E  *  N  A  *  G  R  F  C  A  P  R  M  A  K  :  A  K  C  Y  P  S  *  G  E  G  E  E  R  K  G  N  Q  K  P  N  Y  *  G  R  *  R  I  *  E  S  I  L  *  E  K  K  S  Q  Y  *  D  Q  Q  D  N  *  P  R  E  R  K   : A  V  L  D  *  S  R  E  V  P  *  R  S  *  *  A  I  L  E  S  H  S  R  A  H  S  Q  G  G  A  Q  H  *  E  E  G  K  E  E  G  S  R  *  E  A  I  H  H  S  R  P  R  A  *  T  W  E  T  Y  R  S  F  K  D  A  P  H  T  A  E  A  *  A  H  P  T  T  S  H  D  T  T  P  S  C  P  C  Q  G  R  Q  S  W  E  G  W  K  R  H  Q  G  C  Q  S  W  K  G  R  K  R  H  Q  E  C  *  R  Y  C  S  T  K  W  D  S  R  C  T  Y  Q  *  C  Q  S  Y  S  D  I  R  R  T  Y  C  C  R  M  I  G  F  *  P  N  F  F  S  L  *  C  C  N  V  L  S  S  Y  I  Y  S  F  F  S  M  N  F  V  S  F  T  I  F  C  V  I  L  L  L  F  Y  W  F  V  T  D  I  S  C  I  L  L  H  W  M  S  E  F  V  Y  C  T  I  *  V  L  S  *  L  E  V  N  S  L  F  S  C  L  Q  K  P  Y  I  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17311" stop="16884"/>
                    <exon start="14488" stop="14335"/>
                    <exon start="14201" stop="13767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKGEKRREMAAFDAFSMDGEVPAPAASTPFDDGDYDGSYTAFSNADTPPFHGSGGFGGDYDEVTVEHVSHTVDSPDPYGYGSDSFPNQTGSFGASAAPISNGNGKPYDLGEDTEGIFSSDGPVLPPPNEMREEGFALREWRRQNAIRLEEKEKREKEIRSQIIEEGEEYKKAFYEKRNLSIETNKTTNREKEKLYLTSQEKFHKEADKQYWKAIAELIPKEVPSIEKKGRKKDQDKKPSITVVQGPKPGKPTDLSRMRHILLKLKHTPPPHMIPPPPAPAKDAKVGKDGKDTKDAKAGKDGKDTKNAKDTVAPNGTPDAPTSDAKVTQTSEEPTAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="20021" PGL_stop="18746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20021" e_stop="20012"/>
            <exon e_start="19933" e_stop="19860"/>
            <exon e_start="19514" e_stop="18746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.792" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20021" e_stop="20012" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20011" i_stop="19934" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19933" e_stop="19860" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.792">
            <gDNA_intron_boundary i_start="19859" i_stop="19515" i_length="345"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="19514" e_stop="18746" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20021" stop="20012"/>
              <exon start="19933" stop="19860"/>
              <exon start="19514" stop="18828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19423" stop="18746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19423" stop="18746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19419" stop="18746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19419" stop="18746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAACACAG : GCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAG : ATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGCATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTGTTTTTTTGTAGCCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA</gDNA_template>
            <first_frame> *  N  T   : G  C  *  K  G  S  C  C  S  E  V  *  A  G  S  I  F  S  Q  A  P  G  F  S  K  :  I  I  A  A  A  G  I  F  *  *  K  I  E  T  *  I  F  S  G  C  A  A  E  S  T  I  V  W  *  I  P  E  E  Y  F  R  Y  A  M  N  Y  V  *  R  S  S  P  L  L  V  H  Q  P  H  R  N  F  N  I  H  G  N  I  C  R  C  D  L  *  S  Q  L  G  S  L  L  *  I  T  V  L  L  F  Q  L  D  Y  I  Q  Y  V  R  S  Q  *  K  Q  V  S  G  S  I  D  Q  N  *  I  T  F  R  E  P  G  S  S  N  L  *  T  V  D  V  L  L  F  S  M  *  F  W  E  I  S  K  K  P  V  R  A  W  N  E  F  A  S  S  F  K  M  G  T  K  S  R  I  L  L  G  S  *  F  F  R  H  *  I  H  L  G  H  V  Q  C  V  F  R  S  T  L  Q  F  *  R  F  H  S  *  F  R  I  *  F  *  D  L  S  L  L  W  F  L  P  H  F  L  D  T  K  I  G  R  V  E  N  F  V  K  L  *  F  A  Y  C  V  V  Y  F  C  I  V  F  L  *  P  Q  G  Y  N  L  M  S  K  C  N  L  L  N  *  L  M  E  S  L  V  F  S  </first_frame>
            <second_frame>  K  T  Q  :  A  A  E  R  A  L  V  A  L  K  S  E  L  A  Q  F  S  H  K  R  Q  G  S  P  R :   S  L  Q  Q  Q  G  F  S  N  K  R  L  K  P  E  Y  S  R  G  V  Q  Q  R  V  P  L  S  G  R  F  P  K  N  T  S  A  M  P  *  T  M  Y  K  D  L  H  L  C  L  Y  I  N  P  I  E  I  L  T  Y  M  G  T  S  A  A  V  I  C  E  A  N  W  D  L  Y  Y  E  S  L  S  C  C  F  S  S  T  I  S  S  M  Y  A  H  N  R  S  K  C  L  D  R  *  I  R  I  E  S  P  F  G  S  Q  V  V  Q  I  C  K  L  W  M  S  C  Y  F  P  C  D  F  G  R  S  L  K  S  Q  L  E  P  G  M  S  S  H  L  H  S  R  W  A  P  K  A  A  Y  F  W  G  V  S  S  S  G  I  E  Y  T  L  A  M  S  N  A  F  S  G  V  H  S  N  F  D  D  F  I  V  D  L  G  Y  D  F  E  T  F  R  F  C  G  F  S  R  I  F  *  I  P  K  *  D  E  W  K  I  L  L  S  C  N  L  L  T  V  *  S  I  F  A  L  F  F  C  S  L  R  G  T  I  *  C  P  N  V  T  S  S  I  D  *  W  N  L  *  F  S  A </second_frame>
            <third_frame>   K  H  R :   L  L  K  G  L  L  L  L  *  S  L  S  W  L  N  F  L  T  S  A  R  V  L  Q   : D  H  C  S  S  R  D  F  L  I  K  D  *  N  L  N  I  L  G  V  C  S  R  E  Y  H  C  L  V  D  S  R  R  I  L  P  L  C  H  E  L  C  I  K  I  F  T  S  A  C  T  S  T  P  *  K  F  *  H  T  W  E  H  L  P  L  *  F  V  K  P  I  G  I  F  T  M  N  H  C  P  A  V  S  A  R  L  Y  P  V  C  T  L  T  I  E  A  S  V  W  I  D  R  S  E  L  N  H  L  S  G  A  R  *  F  K  F  V  N  C  G  C  L  A  I  F  H  V  I  L  G  D  L  *  K  A  S  *  S  L  E  *  V  R  I  F  I  Q  D  G  H  Q  K  P  H  T  F  G  E  L  V  L  P  A  L  N  T  P  W  P  C  P  M  R  F  P  E  Y  T  P  I  L  T  I  S  *  L  I  *  D  M  I  L  R  P  F  A  F  V  V  S  P  A  F  F  R  Y  Q  N  R  T  S  G  K  F  C  *  A  V  I  C  L  L  C  S  L  F  L  H  C  F  F  V  A  S  G  V  Q  F  N  V  Q  M  *  P  P  Q  L  I  N  G  I  F  S  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19207" stop="18899"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRIESPFGSQVVQICKLWMSCYFPCDFGRSLKSQLEPGMSSHLHSRWAPKAAYFWGVSSSGIEYTLAMSNAFSGVHSNFDDFIVDLGYDFETFRFCGFSRIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20020" stop="20012"/>
                    <exon start="19933" stop="19860"/>
                    <exon start="19514" stop="19397"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTQAAERALVALKSELAQFSHKRQGSPRSLQQQGFSNKRLKPEYSRGVQQRVPLSGRFPKNTSAMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26863" PGL_stop="26024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26863" e_stop="26673"/>
            <exon e_start="26410" e_stop="26200"/>
            <exon e_start="26117" e_stop="26024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26863" e_stop="26673" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.823">
            <gDNA_intron_boundary i_start="26672" i_stop="26411" i_length="262"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26410" e_stop="26200" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="26199" i_stop="26118" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26117" e_stop="26024" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26863" stop="26673"/>
              <exon start="26410" stop="26200"/>
              <exon start="26117" stop="26024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATG : ATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTG : GCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGA</gDNA_template>
            <first_frame> S  S  V  T  R  R  I  K  L  F  *  S  N  M  P  K  M  I  R  L  L  T  M  E  R  *  S  D  L  S  L  R  F  S  P  H  C  L  I  I  T  N  L  L  S  D  P  *  L  G  C  K  I  E  T  L  F  L  L  V  L  I  Q  * :   S  V  I  L  V  F  L  *  D  *  D  L  L  G  R  I  S  A  A  I  *  L  Q  G  V  G  S  A  L  K  F  M  C  A  Q  W  L  K  E  I  M  L  *  K  C  G  A  F  L  I  Q  I  Q  T  *  L  T  H  K  N  S  W  I  V  L  S  V  S  S  L  :  A  *  G  N  L  C  S  M  Y  S  K  M  E  I  V  I  L  R  W  H  W  *  L  M  I  A  *  K  C  G  M  </first_frame>
            <second_frame>  Q  A  L  P  G  G  *  N  Y  F  K  A  I  C  R  K  *  S  G  C  *  Q  W  K  G  D  Q  I  S  V  *  G  F  P  R  I  V  *  *  S  P  T  Y  C  Q  T  P  D  *  V  A  R  *  K  H  Y  S  Y  S  Y  *  S  N   : D  P  *  Y  *  C  S  C  E  I  E  T  C  L  G  G  S  P  Q  L  S  D  C  K  G  S  E  A  L  *  S  L  C  V  H  N  G  *  K  R  L  C  F  R  N  V  A  P  S  *  S  R  F  K  L  D  *  L  T  R  T  L  G  S  Y  C  L  C  Q  V  W :   L  E  E  I  F  V  Q  C  I  P  R  W  K  L  S  S  *  D  G  I  G  D  *  *  S  L  E  S  V  G  * </second_frame>
            <third_frame>   K  R  Y  Q  E  D  K  I  I  L  K  Q  Y  A  E  N  D  Q  V  V  D  N  G  K  V  I  R  S  Q  S  E  V  F  P  A  L  S  D  N  H  Q  P  I  V  R  P  L  I  R  L  Q  D  R  N  I  I  L  T  R  I  N  P  M  :  I  R  D  T  S  V  L  V  R  L  R  P  A  W  E  D  L  R  S  Y  L  T  A  R  G  R  K  R  F  E  V  Y  V  C  T  M  A  E  R  D  Y  A  L  E  M  W  R  L  L  D  P  D  S  N  L  I  N  S  Q  E  L  L  D  R  I  V  C  V  K  S   : G  L  R  K  S  L  F  N  V  F  Q  D  G  N  C  H  P  K  M  A  L  V  I  D  D  R  L  K  V  W  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26861" stop="26673"/>
                    <exon start="26410" stop="26200"/>
                    <exon start="26117" stop="26026"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRYQEDKIILKQYAENDQVVDNGKVIRSQSEVFPALSDNHQPIVRPLIRLQDRNIILTRINPMIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPDSNLINSQELLDRIVCVKSGLRKSLFNVFQDGNCHPKMALVIDDRLKVWD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="33709" PGL_stop="34671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33815" e_stop="34671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="33815" e_stop="34671" e_length="857"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33815" stop="34388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33831" stop="34671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33831" stop="34606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATCTTCAAATCAGAGCAAACTCACAACACACTTTCTATAAACCCTAATTTCAGGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAGTTTCGGAACACACACTTTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTACATGAACCAATGAAGGTGAAGAAGACTGGGAAGGGTAAGGAAAATGGGGTTTTGCAGAAGAAGAAGAAGAAGGTGAAGTCGAAGGAGCTGGGATTGCCTTCACTGGGGCCCACAGCGACTTTGATGGAGACTCAAGAATGTGGTGAGATGATGGAACATATGGATGAGGTGAATTTTGCGTTGGATGGTTTGAGGAAAGGGCAGCCTGCGAGAATCAGAAGGGCGAGTTTATTGTCATTGCTATCTATATGTGGAACAGCTCAGCAGCGTCGCCTTTTGCGGG</gDNA_template>
            <first_frame> S  N  L  Q  I  R  A  N  S  Q  H  T  F  Y  K  P  *  F  Q  V  P  N  Y  L  K  F  L  V  L  I  T  K  I  H  Q  Y  S  C  S  L  V  D  L  V  A  G  I  L  N  S  P  S  E  N  D  R  *  N  I  R  P  A  E  *  K  H  V  S  E  L  L  *  I  R  V  K  *  *  S  F  G  T  H  T  F  S  G  E  F  S  R  Y  L  Q  F  W  V  F  I  S  R  L  S  S  L  V  V  E  F  Q  *  F  R  S  I  R  C  R  L  I  S  R  V  S  R  I  V  D  F  A  V  K  E  G  G  *  G  F  G  F  *  G  S  *  W  G  F  V  E  T  Q  E  S  K  D  V  *  L  G  D  L  *  F  E  F  I  T  R  I  G  *  I  F  V  F  T  R  W  G  G  V  W  W  S  W  E  I  *  W  G  I  T  *  T  N  E  G  E  E  D  W  E  G  *  G  K  W  G  F  A  E  E  E  E  E  G  E  V  E  G  A  G  I  A  F  T  G  A  H  S  D  F  D  G  D  S  R  M  W  *  D  D  G  T  Y  G  *  G  E  F  C  V  G  W  F  E  E  R  A  A  C  E  N  Q  K  G  E  F  I  V  I  A  I  Y  M  W  N  S  S  A  A  S  P  F  A   </first_frame>
            <second_frame>  Q  I  F  K  S  E  Q  T  H  N  T  L  S  I  N  P  N  F  R  F  Q  I  T  S  N  F  W  F  *  *  R  K  Y  I  N  I  R  V  L  *  L  I  *  L  Q  E  F  *  I  L  R  R  K  M  I  V  R  T  Y  G  R  R  S  R  S  M  S  R  S  Y  S  E  S  G  L  N  D  E  V  S  E  H  T  L  S  Q  E  N  S  Q  D  I  Y  S  F  G  F  S  S  Q  D  S  V  H  W  S  S  N  F  N  N  S  D  P  Y  D  V  G  S  S  Q  G  C  Q  E  L  S  I  L  P  S  R  K  E  D  R  D  L  G  F  E  G  H  D  G  V  L  W  K  P  K  K  V  K  M  F  D  W  E  T  Y  S  L  N  S  S  Q  E  S  D  E  F  S  F  L  P  D  G  G  E  Y  G  G  L  G  K  F  D  G  G  L  H  E  P  M  K  V  K  K  T  G  K  G  K  E  N  G  V  L  Q  K  K  K  K  K  V  K  S  K  E  L  G  L  P  S  L  G  P  T  A  T  L  M  E  T  Q  E  C  G  E  M  M  E  H  M  D  E  V  N  F  A  L  D  G  L  R  K  G  Q  P  A  R  I  R  R  A  S  L  L  S  L  L  S  I  C  G  T  A  Q  Q  R  R  L  L  R  </second_frame>
            <third_frame>   K  S  S  N  Q  S  K  L  T  T  H  F  L  *  T  L  I  S  G  S  K  L  P  Q  I  F  G  F  N  N  E  N  T  S  I  F  V  F  F  S  *  S  S  C  R  N  F  E  F  S  V  G  K  *  S  L  E  H  T  A  G  G  V  E  A  C  L  G  A  T  L  N  Q  G  *  M  M  K  F  R  N  T  H  F  L  R  R  I  L  K  I  F  T  V  L  G  F  H  L  K  T  Q  F  T  G  R  R  I  S  I  I  Q  I  H  T  M  S  A  H  L  K  G  V  K  N  C  R  F  C  R  Q  G  R  R  I  G  I  W  V  L  R  V  M  M  G  F  C  G  N  P  R  K  *  R  C  L  I  G  R  L  I  V  *  I  H  H  K  N  R  M  N  F  R  F  Y  P  M  G  G  S  M  V  V  L  G  N  L  M  G  D  Y  M  N  Q  *  R  *  R  R  L  G  R  V  R  K  M  G  F  C  R  R  R  R  R  R  *  S  R  R  S  W  D  C  L  H  W  G  P  Q  R  L  *  W  R  L  K  N  V  V  R  *  W  N  I  W  M  R  *  I  L  R  W  M  V  *  G  K  G  S  L  R  E  S  E  G  R  V  Y  C  H  C  Y  L  Y  V  E  Q  L  S  S  V  A  F  C  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33960" stop="34670"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILRRKMIVRTYGRRSRSMSRSYSESGLNDEVSEHTLSQENSQDIYSFGFSSQDSVHWSSNFNNSDPYDVGSSQGCQELSILPSRKEDRDLGFEGHDGVLWKPKKVKMFDWETYSLNSSQESDEFSFLPDGGEYGGLGKFDGGLHEPMKVKKTGKGKENGVLQKKKKKVKSKELGLPSLGPTATLMETQECGEMMEHMDEVNFALDGLRKGQPARIRRASLLSLLSICGTAQQRRLLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33709" e_stop="33717"/>
            <exon e_start="33848" e_stop="34528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.443" acc_prob="0.000" e_score="0.889"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="33709" e_stop="33717" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.443" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33718" i_stop="33847" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33848" e_stop="34528" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33709" stop="33717"/>
              <exon start="33848" stop="34528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCTTTAC : ACTTTCTATAAACCCTAATTTCAGGTTCCAAATTACCTCAAATTTTTGGTTTTAATAACGAAAATACATCAATATTCGTGTTCTTTAGTTGATCTAGTTGCAGGAATTTTGAATTCTCCGTCGGAAAATGATCGTTAGAACATACGGCCGGCGGAGTAGAAGCATGTCTCGGAGCTACTCTGAATCAGGGTTAAATGATGAAGTTTCGGAACACACACTTTCTCAGGAGAATTCTCAAGATATTTACAGTTTTGGGTTTTCATCTCAAGACTCAGTTCACTGGTCGTCGAATTTCAATAATTCAGATCCATACGATGTCGGCTCATCTCAAGGGTGTCAAGAATTGTCGATTTTGCCGTCAAGGAAGGAGGATAGGGATTTGGGTTTTGAGGGTCATGATGGGGTTTTGTGGAAACCCAAGAAAGTAAAGATGTTTGATTGGGAGACTTATAGTTTGAATTCATCACAAGAATCGGATGAATTTTCGTTTTTACCCGATGGGGGGGAGTATGGTGGTCTTGGGAAATTTGATGGGGGATTACATGAACCAATGAAGGTGAAGAAGACTGGGAAGGGTAAGGAAAATGGGGTTTTGCAGAAGAAGAAGAAGAAGGTGAAGTCGAAGGAGCTGGGATTGCCTTCACTGGGGCCCACAGCGACTTTGATGGAGACTCAAGAATG</gDNA_template>
            <first_frame> D  L  Y  :  T  F  Y  K  P  *  F  Q  V  P  N  Y  L  K  F  L  V  L  I  T  K  I  H  Q  Y  S  C  S  L  V  D  L  V  A  G  I  L  N  S  P  S  E  N  D  R  *  N  I  R  P  A  E  *  K  H  V  S  E  L  L  *  I  R  V  K  *  *  S  F  G  T  H  T  F  S  G  E  F  S  R  Y  L  Q  F  W  V  F  I  S  R  L  S  S  L  V  V  E  F  Q  *  F  R  S  I  R  C  R  L  I  S  R  V  S  R  I  V  D  F  A  V  K  E  G  G  *  G  F  G  F  *  G  S  *  W  G  F  V  E  T  Q  E  S  K  D  V  *  L  G  D  L  *  F  E  F  I  T  R  I  G  *  I  F  V  F  T  R  W  G  G  V  W  W  S  W  E  I  *  W  G  I  T  *  T  N  E  G  E  E  D  W  E  G  *  G  K  W  G  F  A  E  E  E  E  E  G  E  V  E  G  A  G  I  A  F  T  G  A  H  S  D  F  D  G  D  S  R  M </first_frame>
            <second_frame>  T  F  T :   L  S  I  N  P  N  F  R  F  Q  I  T  S  N  F  W  F  *  *  R  K  Y  I  N  I  R  V  L  *  L  I  *  L  Q  E  F  *  I  L  R  R  K  M  I  V  R  T  Y  G  R  R  S  R  S  M  S  R  S  Y  S  E  S  G  L  N  D  E  V  S  E  H  T  L  S  Q  E  N  S  Q  D  I  Y  S  F  G  F  S  S  Q  D  S  V  H  W  S  S  N  F  N  N  S  D  P  Y  D  V  G  S  S  Q  G  C  Q  E  L  S  I  L  P  S  R  K  E  D  R  D  L  G  F  E  G  H  D  G  V  L  W  K  P  K  K  V  K  M  F  D  W  E  T  Y  S  L  N  S  S  Q  E  S  D  E  F  S  F  L  P  D  G  G  E  Y  G  G  L  G  K  F  D  G  G  L  H  E  P  M  K  V  K  K  T  G  K  G  K  E  N  G  V  L  Q  K  K  K  K  K  V  K  S  K  E  L  G  L  P  S  L  G  P  T  A  T  L  M  E  T  Q  E   </second_frame>
            <third_frame>   P  L   : H  F  L  *  T  L  I  S  G  S  K  L  P  Q  I  F  G  F  N  N  E  N  T  S  I  F  V  F  F  S  *  S  S  C  R  N  F  E  F  S  V  G  K  *  S  L  E  H  T  A  G  G  V  E  A  C  L  G  A  T  L  N  Q  G  *  M  M  K  F  R  N  T  H  F  L  R  R  I  L  K  I  F  T  V  L  G  F  H  L  K  T  Q  F  T  G  R  R  I  S  I  I  Q  I  H  T  M  S  A  H  L  K  G  V  K  N  C  R  F  C  R  Q  G  R  R  I  G  I  W  V  L  R  V  M  M  G  F  C  G  N  P  R  K  *  R  C  L  I  G  R  L  I  V  *  I  H  H  K  N  R  M  N  F  R  F  Y  P  M  G  G  S  M  V  V  L  G  N  L  M  G  D  Y  M  N  Q  *  R  *  R  R  L  G  R  V  R  K  M  G  F  C  R  R  R  R  R  R  *  S  R  R  S  W  D  C  L  H  W  G  P  Q  R  L  *  W  R  L  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33960" stop="34526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILRRKMIVRTYGRRSRSMSRSYSESGLNDEVSEHTLSQENSQDIYSFGFSSQDSVHWSSNFNNSDPYDVGSSQGCQELSILPSRKEDRDLGFEGHDGVLWKPKKVKMFDWETYSLNSSQESDEFSFLPDGGEYGGLGKFDGGLHEPMKVKKTGKGKENGVLQKKKKKVKSKELGLPSLGPTATLMETQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="37555" PGL_stop="39402"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37555" e_stop="37729"/>
            <exon e_start="38334" e_stop="38446"/>
            <exon e_start="38869" e_stop="38997"/>
            <exon e_start="39085" e_stop="39178"/>
            <exon e_start="39321" e_stop="39402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.881" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.959" e_score="0.992"/>
          <exon-intron don_prob="0.942" acc_prob="0.995" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="37555" e_stop="37729" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.881" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37730" i_stop="38333" i_length="604"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38334" e_stop="38446" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="38447" i_stop="38868" i_length="422"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="38869" e_stop="38997" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.959">
            <gDNA_intron_boundary i_start="38998" i_stop="39084" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="39085" e_stop="39178" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39179" i_stop="39320" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39321" e_stop="39402" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37555" stop="37729"/>
              <exon start="38334" stop="38446"/>
              <exon start="38869" stop="38997"/>
              <exon start="39085" stop="39178"/>
              <exon start="39321" stop="39402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGCCTAGATTCTACTTCGTCTTCAATAACCCGCAAGGTGCAGGAGGTTCTTATTTCTTGCAAGGAAATAAAGCCAGATGATGGAAATGGACATGACAGACCAGAATTAAACCCAAAATGGATTAGTTTACTGACAATGGCAAAAGCTTGCTTGTCGACAATCTCTATTGAAG : ATACTTCTGGTACTGTGCGGAGAAGTAAGGACAACTTCAAAGAAAAGCTGAGAGAGCTTGGAGGACTTGATGCGGTCTTTGACGTGGCAAGAAGTTGTCATTCTGTTTTGGAG : GGTTGGTCAAAGAAAAGTTCACAGTCTATCGTAGATTCTAAAGATAATACGGCCATAGAAAGTCTGGTGCTACTCTTAAAATGTTTGAAGATCATGGAAAATGCAACCTTTCTTAGTACGGACAATCAG : AATCACTTGCTTCAAATGAAAGGAAAATTTGATAGTCTGAACTCCCCAAGGTCTTTTACAAAGCTAATCTTAAGTGTGATCAAGATTCTCTCCG : GGGCTTACCTGTGCAGAACTTCTTTTGGAAGTTCCAATGATGGAAAAGTCTGTGACCTTTCTGATGGAACTGCTCGTGCTTT</gDNA_template>
            <first_frame> K  G  L  D  S  T  S  S  S  I  T  R  K  V  Q  E  V  L  I  S  C  K  E  I  K  P  D  D  G  N  G  H  D  R  P  E  L  N  P  K  W  I  S  L  L  T  M  A  K  A  C  L  S  T  I  S  I  E   : D  T  S  G  T  V  R  R  S  K  D  N  F  K  E  K  L  R  E  L  G  G  L  D  A  V  F  D  V  A  R  S  C  H  S  V  L  E  :  G  W  S  K  K  S  S  Q  S  I  V  D  S  K  D  N  T  A  I  E  S  L  V  L  L  L  K  C  L  K  I  M  E  N  A  T  F  L  S  T  D  N  Q  :  N  H  L  L  Q  M  K  G  K  F  D  S  L  N  S  P  R  S  F  T  K  L  I  L  S  V  I  K  I  L  S   : G  A  Y  L  C  R  T  S  F  G  S  S  N  D  G  K  V  C  D  L  S  D  G  T  A  R  A   </first_frame>
            <second_frame>  K  A  *  I  L  L  R  L  Q  *  P  A  R  C  R  R  F  L  F  L  A  R  K  *  S  Q  M  M  E  M  D  M  T  D  Q  N  *  T  Q  N  G  L  V  Y  *  Q  W  Q  K  L  A  C  R  Q  S  L  L  K  :  I  L  L  V  L  C  G  E  V  R  T  T  S  K  K  S  *  E  S  L  E  D  L  M  R  S  L  T  W  Q  E  V  V  I  L  F  W  R :   V  G  Q  R  K  V  H  S  L  S  *  I  L  K  I  I  R  P  *  K  V  W  C  Y  S  *  N  V  *  R  S  W  K  M  Q  P  F  L  V  R  T  I  R :   I  T  C  F  K  *  K  E  N  L  I  V  *  T  P  Q  G  L  L  Q  S  *  S  *  V  *  S  R  F  S  P  :  G  L  T  C  A  E  L  L  L  E  V  P  M  M  E  K  S  V  T  F  L  M  E  L  L  V  L  </second_frame>
            <third_frame>   R  P  R  F  Y  F  V  F  N  N  P  Q  G  A  G  G  S  Y  F  L  Q  G  N  K  A  R  *  W  K  W  T  *  Q  T  R  I  K  P  K  M  D  *  F  T  D  N  G  K  S  L  L  V  D  N  L  Y  *  R :   Y  F  W  Y  C  A  E  K  *  G  Q  L  Q  R  K  A  E  R  A  W  R  T  *  C  G  L  *  R  G  K  K  L  S  F  C  F  G   : G  L  V  K  E  K  F  T  V  Y  R  R  F  *  R  *  Y  G  H  R  K  S  G  A  T  L  K  M  F  E  D  H  G  K  C  N  L  S  *  Y  G  Q  S   : E  S  L  A  S  N  E  R  K  I  *  *  S  E  L  P  K  V  F  Y  K  A  N  L  K  C  D  Q  D  S  L  R :   G  L  P  V  Q  N  F  F  W  K  F  Q  *  W  K  S  L  *  P  F  *  W  N  C  S  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37555" stop="37729"/>
                    <exon start="38334" stop="38446"/>
                    <exon start="38869" stop="38997"/>
                    <exon start="39085" stop="39178"/>
                    <exon start="39321" stop="39400"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGLDSTSSSITRKVQEVLISCKEIKPDDGNGHDRPELNPKWISLLTMAKACLSTISIEDTSGTVRRSKDNFKEKLRELGGLDAVFDVARSCHSVLEGWSKKSSQSIVDSKDNTAIESLVLLLKCLKIMENATFLSTDNQNHLLQMKGKFDSLNSPRSFTKLILSVIKILSGAYLCRTSFGSSNDGKVCDLSDGTARA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="42915" PGL_stop="44644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42915" e_stop="43067"/>
            <exon e_start="43603" e_stop="43700"/>
            <exon e_start="43788" e_stop="43869"/>
            <exon e_start="44119" e_stop="44515"/>
            <exon e_start="44629" e_stop="44644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.104" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.565" e_score="0.980"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42915" e_stop="43067" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43068" i_stop="43602" i_length="535"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43603" e_stop="43700" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.938">
            <gDNA_intron_boundary i_start="43701" i_stop="43787" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43788" e_stop="43869" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.104" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43870" i_stop="44118" i_length="249"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="44119" e_stop="44515" e_length="397"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.565">
            <gDNA_intron_boundary i_start="44516" i_stop="44628" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="0.562">
            <gDNA_exon_boundary e_start="44629" e_stop="44644" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42915" stop="43067"/>
              <exon start="43603" stop="43700"/>
              <exon start="43788" stop="43869"/>
              <exon start="44119" stop="44317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43813" stop="43869"/>
              <exon start="44119" stop="44515"/>
              <exon start="44629" stop="44644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTAGACTTGCAGCTGCTAGTATTTCATTGCCTGGATCAGAAGGTTTGTTTAAGGGGGAGACTCAGACAGATGTTATCCCTCTGCTATGTGCAATCTTTCTGGAAAATCAAGGGGCTGGAGAGGCTGCTGGGGAAGGAAAATGTTTGCAATGG : GATGATGAAGATGCTGTACTACAGGGGGAGAAAGAAGCTGAAAAAATGATTATTGAAGCATATTCAGCTCTCCTTCTTGCCTTCCTTTCAACTGAGAG : CAAGAGCATACGGCAGGCAATCGCTGGTTACTTACCAGATCATAAATTGTCCATTCTTGTACCTGTGCTGGAGAGATTTGTG : GAATTCCACATGACACTGAACATGATATCGCCAGAGACTCATTCAACAGTGCTTGAAGTTATAGAATCTTGTAGGGTTAGGTGAGACTCTATTGTTTCCTTTTCCTTCCGTGTCTTTTCCTCGAAGATGGTAACAATGAGACTTTGTACAGCATAAACTACCTTTCCCTACAGCATTGGTGCATTAGAAATCCTATCTCAGGATTTGTGTGTCATGGCCTTTGTTTGTCTATGGTTTCCCTGGTCTTTATAGAAATATATTCTTCCCCCTATTTTCCAGCCAATTGTTTCACCATGTTTTGGTGTGGGCTGAGATACTTGTACATGAAGAAAGATTATGAATATGTATCACGGTTGTAATTTGTAGTAATTTTTTAGTGATGGTTTCTTTCTCTCTG : TGAAGAAATAATAGTC</gDNA_template>
            <first_frame> S  R  L  A  A  A  S  I  S  L  P  G  S  E  G  L  F  K  G  E  T  Q  T  D  V  I  P  L  L  C  A  I  F  L  E  N  Q  G  A  G  E  A  A  G  E  G  K  C  L  Q  W  :  D  D  E  D  A  V  L  Q  G  E  K  E  A  E  K  M  I  I  E  A  Y  S  A  L  L  L  A  F  L  S  T  E  S :   K  S  I  R  Q  A  I  A  G  Y  L  P  D  H  K  L  S  I  L  V  P  V  L  E  R  F  V  :  E  F  H  M  T  L  N  M  I  S  P  E  T  H  S  T  V  L  E  V  I  E  S  C  R  V  R  *  D  S  I  V  S  F  S  F  R  V  F  S  S  K  M  V  T  M  R  L  C  T  A  *  T  T  F  P  Y  S  I  G  A  L  E  I  L  S  Q  D  L  C  V  M  A  F  V  C  L  W  F  P  W  S  L  *  K  Y  I  L  P  P  I  F  Q  P  I  V  S  P  C  F  G  V  G  *  D  T  C  T  *  R  K  I  M  N  M  Y  H  G  C  N  L  *  *  F  F  S  D  G  F  F  L  S   : V  K  K  *  *   </first_frame>
            <second_frame>  L  D  L  Q  L  L  V  F  H  C  L  D  Q  K  V  C  L  R  G  R  L  R  Q  M  L  S  L  C  Y  V  Q  S  F  W  K  I  K  G  L  E  R  L  L  G  K  E  N  V  C  N  G :   M  M  K  M  L  Y  Y  R  G  R  K  K  L  K  K  *  L  L  K  H  I  Q  L  S  F  L  P  S  F  Q  L  R   : A  R  A  Y  G  R  Q  S  L  V  T  Y  Q  I  I  N  C  P  F  L  Y  L  C  W  R  D  L  W :   N  S  T  *  H  *  T  *  Y  R  Q  R  L  I  Q  Q  C  L  K  L  *  N  L  V  G  L  G  E  T  L  L  F  P  F  P  S  V  S  F  P  R  R  W  *  Q  *  D  F  V  Q  H  K  L  P  F  P  T  A  L  V  H  *  K  S  Y  L  R  I  C  V  S  W  P  L  F  V  Y  G  F  P  G  L  Y  R  N  I  F  F  P  L  F  S  S  Q  L  F  H  H  V  L  V  W  A  E  I  L  V  H  E  E  R  L  *  I  C  I  T  V  V  I  C  S  N  F  L  V  M  V  S  F  S  L  :  *  R  N  N  S  </second_frame>
            <third_frame>   *  T  C  S  C  *  Y  F  I  A  W  I  R  R  F  V  *  G  G  D  S  D  R  C  Y  P  S  A  M  C  N  L  S  G  K  S  R  G  W  R  G  C  W  G  R  K  M  F  A  M   : G  *  *  R  C  C  T  T  G  G  E  R  S  *  K  N  D  Y  *  S  I  F  S  S  P  S  C  L  P  F  N  *  E  :  Q  E  H  T  A  G  N  R  W  L  L  T  R  S  *  I  V  H  S  C  T  C  A  G  E  I  C   : G  I  P  H  D  T  E  H  D  I  A  R  D  S  F  N  S  A  *  S  Y  R  I  L  *  G  *  V  R  L  Y  C  F  L  F  L  P  C  L  F  L  E  D  G  N  N  E  T  L  Y  S  I  N  Y  L  S  L  Q  H  W  C  I  R  N  P  I  S  G  F  V  C  H  G  L  C  L  S  M  V  S  L  V  F  I  E  I  Y  S  S  P  Y  F  P  A  N  C  F  T  M  F  W  C  G  L  R  Y  L  Y  M  K  K  D  Y  E  Y  V  S  R  L  *  F  V  V  I  F  *  *  W  F  L  S  L  C :   E  E  I  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42915" stop="43067"/>
                    <exon start="43603" stop="43700"/>
                    <exon start="43788" stop="43869"/>
                    <exon start="44119" stop="44202"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRLAAASISLPGSEGLFKGETQTDVIPLLCAIFLENQGAGEAAGEGKCLQWDDEDAVLQGEKEAEKMIIEAYSALLLAFLSTESKSIRQAIAGYLPDHKLSILVPVLERFVEFHMTLNMISPETHSTVLEVIESCRVR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44199" stop="44477"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRLYCFLFLPCLFLEDGNNETLYSINYLSLQHWCIRNPISGFVCHGLCLSMVSLVFIEIYSSPYFPANCFTMFWCGLRYLYMKKDYEYVSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="47592" PGL_stop="45167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47592" e_stop="47095"/>
            <exon e_start="46943" e_stop="46776"/>
            <exon e_start="46676" e_stop="46441"/>
            <exon e_start="45860" e_stop="45304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47592" e_stop="47095" e_length="498"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.848">
            <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46943" e_stop="46776" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46676" e_stop="46441" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.969">
            <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="45860" e_stop="45304" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47592" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47486" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47480" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47414" stop="47095"/>
              <exon start="46943" stop="46776"/>
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              <exon start="45860" stop="45779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47411" stop="47095"/>
              <exon start="46943" stop="46776"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47401" stop="47095"/>
              <exon start="46943" stop="46776"/>
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              <exon start="45860" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47389" stop="47095"/>
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              <exon start="46676" stop="46443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47388" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47384" stop="47095"/>
              <exon start="46943" stop="46776"/>
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              <exon start="45860" stop="45712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47384" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47383" stop="47095"/>
              <exon start="46943" stop="46776"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47381" stop="47095"/>
              <exon start="46943" stop="46813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47380" stop="47109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47379" stop="47095"/>
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              <exon start="45860" stop="45696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47379" stop="47095"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47379" stop="47095"/>
              <exon start="46943" stop="46776"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47377" stop="47095"/>
              <exon start="46943" stop="46776"/>
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              <exon start="45860" stop="45720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47377" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47095"/>
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              <exon start="45860" stop="45712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47375" stop="47095"/>
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              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47373" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47372" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47372" stop="47095"/>
              <exon start="46943" stop="46814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47368" stop="47095"/>
              <exon start="46943" stop="46814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47359" stop="47095"/>
              <exon start="46943" stop="46862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47355" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47342" stop="47095"/>
              <exon start="46943" stop="46776"/>
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              <exon start="45860" stop="45623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47336" stop="47095"/>
              <exon start="46943" stop="46790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47326" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47291" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47224" stop="47095"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47131" stop="47095"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46940" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553606" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46922" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46915" stop="46776"/>
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              <exon start="45860" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46910" stop="46776"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46776"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46866" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553712" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46864" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46860" stop="46776"/>
              <exon start="46676" stop="46471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46853" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46801" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46785" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46785" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46629" stop="46441"/>
              <exon start="45860" stop="45304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46514" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46514" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46496" stop="46441"/>
              <exon start="45860" stop="45362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45854" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45542" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCAGCTTATATTAGTGTGGATCTACTCATTAACTTGTTTATTTATTAATTCAGTGTCATTTAATAGCCGTTCCACCTAACATCTAATGAAATTTGGCCGGCAAAAATTAAACAATTAAAGAAAAGACTATTATATGAAGTCACTCTACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG : GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG : ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG : GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTCTCTTTCTTTGCTATGTTATATTATGAATGTTAACTGATTACCTTAAAAGTAGAGATTT</gDNA_template>
            <first_frame> I  S  A  Y  I  S  V  D  L  L  I  N  L  F  I  Y  *  F  S  V  I  *  *  P  F  H  L  T  S  N  E  I  W  P  A  K  I  K  Q  L  K  K  R  L  L  Y  E  V  T  L  L  K  L  L  *  N  P  I  Q  T  *  S  I  F  L  Q  I  K  Q  K  M  E  E  I  E  H  K  Y  I  E  V  N  G  L  K  L  H  I  A  E  I  G  S  G  F  S  P  V  V  V  F  L  H  G  F  P  E  I  W  Y  S  W  R  Y  Q  M  K  A  V  A  K  A  G  Y  R  A  I  A  P  D  Y  R  G  Y  G  L  S  D  Q  P  T  Q  P  E  K  T  T  F  L  D  L  V  S  D  L  L  A  L  L  D  A  L  N  I  S  K  :  V  F  L  V  G  K  D  F  G  S  F  V  I  S  Y  F  S  I  L  H  K  E  R  V  S  G  F  I  V  M  G  V  P  F  L  P  P  K  P  L  E  F  K  K  G  L  P  E  G  F  Y  I  S  R  F  G  :  I  P  G  R  A  E  A  D  F  G  R  L  D  A  K  T  V  V  R  N  V  Y  I  L  F  S  R  S  E  L  P  I  A  N  E  D  Q  E  I  M  D  I  V  Q  P  S  T  P  L  P  P  W  F  S  E  E  D  L  A  A  Y  G  A  L  Y  E  K  S  G  F  R  T  A  L  Q  V  P  Y  R :   S  L  H  E  Q  V  N  I  T  D  P  T  V  H  V  Q  A  L  Y  I  K  G  E  K  D  Y  F  L  K  F  P  G  I  E  D  Y  I  S  S  G  V  L  K  S  L  V  P  N  L  Q  I  V  N  L  P  E  G  N  H  F  V  Q  E  Q  L  P  D  E  V  N  Q  L  V  L  E  F  L  T  K  N  S  K  V  Q  *  V  L  I  V  V  A  A  P  S  T  K  N  R  S  S  N  K  A  L  L  L  L  L  L  L  Y  L  L  R  N  R  S  S  N  K  L  L  F  Q  F  S  F  S  K  S  *  L  C  F  T  C  N  I  L  L  Q  *  P  C  N  S  Y  K  K  Q  G  T  E  R  *  N  Y  H  V  M  K  A  L  F  H  L  S  F  F  A  M  L  Y  Y  E  C  *  L  I  T  L  K  V  E  I  </first_frame>
            <second_frame>  F  Q  L  I  L  V  W  I  Y  S  L  T  C  L  F  I  N  S  V  S  F  N  S  R  S  T  *  H  L  M  K  F  G  R  Q  K  L  N  N  *  R  K  D  Y  Y  M  K  S  L  Y  *  S  Y  Y  K  I  P  Y  K  L  D  Q  S  S  Y  K  *  S  K  K  W  K  K  *  S  T  N  T  L  K  *  M  V  *  S  S  I  *  L  K  L  E  V  G  F  L  Q  L  W  C  S  Y  M  D  S  L  K  F  G  I  L  G  G  T  R  *  K  L  *  L  K  R  V  T  E  L  L  H  P  I  T  E  D  M  G  Y  R  I  N  Q  P  N  P  R  K  P  H  S  S  I  L  S  V  T  S  L  H  F  L  M  L  L  I  S  L  R :   F  F  S  L  V  K  T  L  D  L  L  S  F  R  I  F  P  F  S  T  R  R  E  S  L  D  L  L  L  W  G  C  H  F  C  L  Q  N  L  L  S  L  K  K  A  S  L  K  D  S  I  F  R  D  L  G :   Y  L  G  E  L  K  L  I  L  V  V  L  T  P  K  Q  *  *  G  M  Y  T  F  F  S  P  E  V  N  Y  Q  *  P  M  K  I  R  K  S  W  T  L  C  N  L  Q  L  L  C  P  L  G  S  P  R  K  T  W  L  R  M  E  L  C  T  K  N  L  D  S  E  L  H  C  R  F  P  I   : G  H  C  M  N  K  S  T  *  Q  I  Q  P  F  T  F  K  H  C  I  L  R  E  R  K  I  I  S  S  N  F  Q  A  S  K  I  T  L  V  V  E  S  S  K  V  *  S  L  I  C  R  *  L  T  C  Q  K  E  T  I  L  F  K  N  N  Y  L  T  R  L  I  N  S  C  S  N  F  L  P  K  I  V  R  F  S  K  S  S  L  L  L  L  L  R  L  L  R  T  E  A  P  I  R  R  C  Y  C  C  C  C  S  I  Y  *  G  I  E  V  Q  I  S  C  C  F  N  F  R  S  V  S  P  S  C  V  L  H  V  I  F  C  C  S  D  P  A  I  P  I  K  S  K  A  L  K  G  E  I  T  M  L  *  K  L  C  S  I  S  L  S  L  L  C  Y  I  M  N  V  N  *  L  P  *  K  *  R  F </second_frame>
            <third_frame>   F  S  L  Y  *  C  G  S  T  H  *  L  V  Y  L  L  I  Q  C  H  L  I  A  V  P  P  N  I  *  *  N  L  A  G  K  N  *  T  I  K  E  K  T  I  I  *  S  H  S  T  K  V  I  I  K  S  H  T  N  L  I  N  L  L  T  N  K  A  K  N  G  R  N  R  A  Q  I  H  *  S  E  W  S  K  A  P  Y  S  *  N  W  K  W  V  F  S  S  C  G  V  L  T  W  I  P  *  N  L  V  F  L  E  V  P  D  E  S  C  S  *  S  G  L  Q  S  Y  C  T  R  L  Q  R  I  W  V  I  G  S  T  N  P  T  R  E  N  H  I  P  R  S  C  Q  *  P  P  C  T  S  *  C  S  *  Y  L  *   : G  F  S  R  W  *  R  L  W  I  F  C  H  F  V  F  F  H  S  P  Q  G  E  S  L  W  I  Y  C  Y  G  G  A  I  F  A  S  K  T  S  *  V  *  K  R  P  P  *  R  I  L  Y  F  E  I  W   : D  T  W  E  S  *  S  *  F  W  S  S  *  R  Q  N  S  S  E  E  C  I  H  S  F  L  Q  K  *  I  T  N  S  Q  *  R  S  G  N  H  G  H  C  A  T  F  N  S  S  A  P  L  V  L  R  G  R  P  G  C  V  W  S  F  V  R  K  I  W  I  P  N  C  I  A  G  S  L  *  :  V  T  A  *  T  S  Q  H  N  R  S  N  R  S  R  S  S  T  V  Y  *  G  R  E  R  L  F  P  Q  I  S  R  H  R  R  L  H  *  *  W  S  P  Q  K  F  S  P  *  S  A  D  S  *  L  A  R  R  K  P  F  C  S  R  T  T  T  *  R  G  *  S  T  R  A  R  I  S  Y  Q  K  *  *  G  S  V  S  P  H  C  C  C  C  S  V  Y  *  E  Q  K  L  Q  *  G  V  V  I  V  V  V  A  L  S  T  K  E  *  K  F  K  *  V  V  V  S  I  F  V  Q  *  V  L  V  V  F  Y  M  *  Y  F  A  A  V  T  L  Q  F  L  *  K  A  R  H  *  K  V  K  L  P  C  Y  E  S  F  V  P  S  L  F  L  C  Y  V  I  L  *  M  L  T  D  Y  L  K  S  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47409" stop="47095"/>
                    <exon start="46943" stop="46776"/>
                    <exon start="46676" stop="46441"/>
                    <exon start="45860" stop="45605"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFLQIKQKMEEIEHKYIEVNGLKLHIAEIGSGFSPVVVFLHGFPEIWYSWRYQMKAVAKAGYRAIAPDYRGYGLSDQPTQPEKTTFLDLVSDLLALLDALNISKVFLVGKDFGSFVISYFSILHKERVSGFIVMGVPFLPPKPLEFKKGLPEGFYISRFGIPGRAEADFGRLDAKTVVRNVYILFSRSELPIANEDQEIMDIVQPSTPLPPWFSEEDLAAYGALYEKSGFRTALQVPYRSLHEQVNITDPTVHVQALYIKGEKDYFLKFPGIEDYISSGVLKSLVPNLQIVNLPEGNHFVQEQLPDEVNQLVLEFLTKNSKVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47592" e_stop="47095"/>
            <exon e_start="46943" e_stop="46776"/>
            <exon e_start="46676" e_stop="46441"/>
            <exon e_start="45860" e_stop="45386"/>
            <exon e_start="45192" e_stop="45167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.731"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47592" e_stop="47095" e_length="498"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.848">
            <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46943" e_stop="46776" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46676" e_stop="46441" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.969">
            <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45860" e_stop="45386" e_length="475"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45385" i_stop="45193" i_length="193"/>
          </intron>
          <exon e_serial="5" e_score="0.731">
            <gDNA_exon_boundary e_start="45192" e_stop="45167" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47592" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47486" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47480" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47414" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47411" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47401" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47389" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47388" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47384" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47384" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47383" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47381" stop="47095"/>
              <exon start="46943" stop="46813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47380" stop="47109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47379" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47379" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47379" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47377" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47377" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47375" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47373" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47372" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47372" stop="47095"/>
              <exon start="46943" stop="46814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47368" stop="47095"/>
              <exon start="46943" stop="46814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47359" stop="47095"/>
              <exon start="46943" stop="46862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47355" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47342" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47336" stop="47095"/>
              <exon start="46943" stop="46790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47326" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47291" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47285" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47224" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47131" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47131" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46922" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46860" stop="46776"/>
              <exon start="46676" stop="46471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46857" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45386"/>
              <exon start="45192" stop="45167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46801" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46785" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46514" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46514" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45854" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCAGCTTATATTAGTGTGGATCTACTCATTAACTTGTTTATTTATTAATTCAGTGTCATTTAATAGCCGTTCCACCTAACATCTAATGAAATTTGGCCGGCAAAAATTAAACAATTAAAGAAAAGACTATTATATGAAGTCACTCTACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG : GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG : ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG : GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCAT : GTGAATCAACAAAAACAAAAAGAAGA</gDNA_template>
            <first_frame> I  S  A  Y  I  S  V  D  L  L  I  N  L  F  I  Y  *  F  S  V  I  *  *  P  F  H  L  T  S  N  E  I  W  P  A  K  I  K  Q  L  K  K  R  L  L  Y  E  V  T  L  L  K  L  L  *  N  P  I  Q  T  *  S  I  F  L  Q  I  K  Q  K  M  E  E  I  E  H  K  Y  I  E  V  N  G  L  K  L  H  I  A  E  I  G  S  G  F  S  P  V  V  V  F  L  H  G  F  P  E  I  W  Y  S  W  R  Y  Q  M  K  A  V  A  K  A  G  Y  R  A  I  A  P  D  Y  R  G  Y  G  L  S  D  Q  P  T  Q  P  E  K  T  T  F  L  D  L  V  S  D  L  L  A  L  L  D  A  L  N  I  S  K  :  V  F  L  V  G  K  D  F  G  S  F  V  I  S  Y  F  S  I  L  H  K  E  R  V  S  G  F  I  V  M  G  V  P  F  L  P  P  K  P  L  E  F  K  K  G  L  P  E  G  F  Y  I  S  R  F  G  :  I  P  G  R  A  E  A  D  F  G  R  L  D  A  K  T  V  V  R  N  V  Y  I  L  F  S  R  S  E  L  P  I  A  N  E  D  Q  E  I  M  D  I  V  Q  P  S  T  P  L  P  P  W  F  S  E  E  D  L  A  A  Y  G  A  L  Y  E  K  S  G  F  R  T  A  L  Q  V  P  Y  R :   S  L  H  E  Q  V  N  I  T  D  P  T  V  H  V  Q  A  L  Y  I  K  G  E  K  D  Y  F  L  K  F  P  G  I  E  D  Y  I  S  S  G  V  L  K  S  L  V  P  N  L  Q  I  V  N  L  P  E  G  N  H  F  V  Q  E  Q  L  P  D  E  V  N  Q  L  V  L  E  F  L  T  K  N  S  K  V  Q  *  V  L  I  V  V  A  A  P  S  T  K  N  R  S  S  N  K  A  L  L  L  L  L  L  L  Y  L  L  R  N  R  S  S  N  K  L  L  F  Q  F  S  F  S  K  S  *  L  C  F  T  C  N  I  L  L  Q  *  P  C  N  S  Y  K  K  Q  G  T  E  R  *  N  Y  H  :  V  N  Q  Q  K  Q  K  E   </first_frame>
            <second_frame>  F  Q  L  I  L  V  W  I  Y  S  L  T  C  L  F  I  N  S  V  S  F  N  S  R  S  T  *  H  L  M  K  F  G  R  Q  K  L  N  N  *  R  K  D  Y  Y  M  K  S  L  Y  *  S  Y  Y  K  I  P  Y  K  L  D  Q  S  S  Y  K  *  S  K  K  W  K  K  *  S  T  N  T  L  K  *  M  V  *  S  S  I  *  L  K  L  E  V  G  F  L  Q  L  W  C  S  Y  M  D  S  L  K  F  G  I  L  G  G  T  R  *  K  L  *  L  K  R  V  T  E  L  L  H  P  I  T  E  D  M  G  Y  R  I  N  Q  P  N  P  R  K  P  H  S  S  I  L  S  V  T  S  L  H  F  L  M  L  L  I  S  L  R :   F  F  S  L  V  K  T  L  D  L  L  S  F  R  I  F  P  F  S  T  R  R  E  S  L  D  L  L  L  W  G  C  H  F  C  L  Q  N  L  L  S  L  K  K  A  S  L  K  D  S  I  F  R  D  L  G :   Y  L  G  E  L  K  L  I  L  V  V  L  T  P  K  Q  *  *  G  M  Y  T  F  F  S  P  E  V  N  Y  Q  *  P  M  K  I  R  K  S  W  T  L  C  N  L  Q  L  L  C  P  L  G  S  P  R  K  T  W  L  R  M  E  L  C  T  K  N  L  D  S  E  L  H  C  R  F  P  I   : G  H  C  M  N  K  S  T  *  Q  I  Q  P  F  T  F  K  H  C  I  L  R  E  R  K  I  I  S  S  N  F  Q  A  S  K  I  T  L  V  V  E  S  S  K  V  *  S  L  I  C  R  *  L  T  C  Q  K  E  T  I  L  F  K  N  N  Y  L  T  R  L  I  N  S  C  S  N  F  L  P  K  I  V  R  F  S  K  S  S  L  L  L  L  L  R  L  L  R  T  E  A  P  I  R  R  C  Y  C  C  C  C  S  I  Y  *  G  I  E  V  Q  I  S  C  C  F  N  F  R  S  V  S  P  S  C  V  L  H  V  I  F  C  C  S  D  P  A  I  P  I  K  S  K  A  L  K  G  E  I  T  M :   *  I  N  K  N  K  K  K  </second_frame>
            <third_frame>   F  S  L  Y  *  C  G  S  T  H  *  L  V  Y  L  L  I  Q  C  H  L  I  A  V  P  P  N  I  *  *  N  L  A  G  K  N  *  T  I  K  E  K  T  I  I  *  S  H  S  T  K  V  I  I  K  S  H  T  N  L  I  N  L  L  T  N  K  A  K  N  G  R  N  R  A  Q  I  H  *  S  E  W  S  K  A  P  Y  S  *  N  W  K  W  V  F  S  S  C  G  V  L  T  W  I  P  *  N  L  V  F  L  E  V  P  D  E  S  C  S  *  S  G  L  Q  S  Y  C  T  R  L  Q  R  I  W  V  I  G  S  T  N  P  T  R  E  N  H  I  P  R  S  C  Q  *  P  P  C  T  S  *  C  S  *  Y  L  *   : G  F  S  R  W  *  R  L  W  I  F  C  H  F  V  F  F  H  S  P  Q  G  E  S  L  W  I  Y  C  Y  G  G  A  I  F  A  S  K  T  S  *  V  *  K  R  P  P  *  R  I  L  Y  F  E  I  W   : D  T  W  E  S  *  S  *  F  W  S  S  *  R  Q  N  S  S  E  E  C  I  H  S  F  L  Q  K  *  I  T  N  S  Q  *  R  S  G  N  H  G  H  C  A  T  F  N  S  S  A  P  L  V  L  R  G  R  P  G  C  V  W  S  F  V  R  K  I  W  I  P  N  C  I  A  G  S  L  *  :  V  T  A  *  T  S  Q  H  N  R  S  N  R  S  R  S  S  T  V  Y  *  G  R  E  R  L  F  P  Q  I  S  R  H  R  R  L  H  *  *  W  S  P  Q  K  F  S  P  *  S  A  D  S  *  L  A  R  R  K  P  F  C  S  R  T  T  T  *  R  G  *  S  T  R  A  R  I  S  Y  Q  K  *  *  G  S  V  S  P  H  C  C  C  C  S  V  Y  *  E  Q  K  L  Q  *  G  V  V  I  V  V  V  A  L  S  T  K  E  *  K  F  K  *  V  V  V  S  I  F  V  Q  *  V  L  V  V  F  Y  M  *  Y  F  A  A  V  T  L  Q  F  L  *  K  A  R  H  *  K  V  K  L  P   : C  E  S  T  K  T  K  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47409" stop="47095"/>
                    <exon start="46943" stop="46776"/>
                    <exon start="46676" stop="46441"/>
                    <exon start="45860" stop="45605"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFLQIKQKMEEIEHKYIEVNGLKLHIAEIGSGFSPVVVFLHGFPEIWYSWRYQMKAVAKAGYRAIAPDYRGYGLSDQPTQPEKTTFLDLVSDLLALLDALNISKVFLVGKDFGSFVISYFSILHKERVSGFIVMGVPFLPPKPLEFKKGLPEGFYISRFGIPGRAEADFGRLDAKTVVRNVYILFSRSELPIANEDQEIMDIVQPSTPLPPWFSEEDLAAYGALYEKSGFRTALQVPYRSLHEQVNITDPTVHVQALYIKGEKDYFLKFPGIEDYISSGVLKSLVPNLQIVNLPEGNHFVQEQLPDEVNQLVLEFLTKNSKVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47592" e_stop="47095"/>
            <exon e_start="46943" e_stop="46776"/>
            <exon e_start="46676" e_stop="45372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47592" e_stop="47095" e_length="498"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.848">
            <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46943" e_stop="46776" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46676" e_stop="45372" e_length="1305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47592" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47486" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47389" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47381" stop="47095"/>
              <exon start="46943" stop="46813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47380" stop="47109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47379" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47377" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47373" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47372" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47372" stop="47095"/>
              <exon start="46943" stop="46814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47368" stop="47095"/>
              <exon start="46943" stop="46814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47359" stop="47095"/>
              <exon start="46943" stop="46862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47355" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47336" stop="47095"/>
              <exon start="46943" stop="46790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47326" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47291" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47131" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46860" stop="46776"/>
              <exon start="46676" stop="46471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46582" stop="45773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45854" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45542" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCAGCTTATATTAGTGTGGATCTACTCATTAACTTGTTTATTTATTAATTCAGTGTCATTTAATAGCCGTTCCACCTAACATCTAATGAAATTTGGCCGGCAAAAATTAAACAATTAAAGAAAAGACTATTATATGAAGTCACTCTACTAAAGTTATTATAAAATCCCATACAAACTTGATCAATCTTCTTACAAATAAAGCAAAAAATGGAAGAAATAGAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAAGTGGGTTTTCTCCAGTTGTGGTGTTCTTACATGGATTCCCTGAAATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG : GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG : ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTT</gDNA_template>
            <first_frame> I  S  A  Y  I  S  V  D  L  L  I  N  L  F  I  Y  *  F  S  V  I  *  *  P  F  H  L  T  S  N  E  I  W  P  A  K  I  K  Q  L  K  K  R  L  L  Y  E  V  T  L  L  K  L  L  *  N  P  I  Q  T  *  S  I  F  L  Q  I  K  Q  K  M  E  E  I  E  H  K  Y  I  E  V  N  G  L  K  L  H  I  A  E  I  G  S  G  F  S  P  V  V  V  F  L  H  G  F  P  E  I  W  Y  S  W  R  Y  Q  M  K  A  V  A  K  A  G  Y  R  A  I  A  P  D  Y  R  G  Y  G  L  S  D  Q  P  T  Q  P  E  K  T  T  F  L  D  L  V  S  D  L  L  A  L  L  D  A  L  N  I  S  K  :  V  F  L  V  G  K  D  F  G  S  F  V  I  S  Y  F  S  I  L  H  K  E  R  V  S  G  F  I  V  M  G  V  P  F  L  P  P  K  P  L  E  F  K  K  G  L  P  E  G  F  Y  I  S  R  F  G  :  I  P  G  R  A  E  A  D  F  G  R  L  D  A  K  T  V  V  R  N  V  Y  I  L  F  S  R  S  E  L  P  I  A  N  E  D  Q  E  I  M  D  I  V  Q  P  S  T  P  L  P  P  W  F  S  E  E  D  L  A  A  Y  G  A  L  Y  E  K  S  G  F  R  T  A  L  Q  V  P  Y  R  Y  H  A  L  T  S  T  V  C  L  F  Y  L  A  *  S  L  Q  K  Y  C  W  L  C  V  G  S  S  K  T  C  V  S  L  E  D  L  T  L  V  Q  Q  R  F  *  I  G  G  A  L  T  I  *  V  L  F  E  P  E  F  P  H  S  L  P  S  Y  L  T  L  I  H  Y  T  N  I  I  V  V  V  I  H  S  P  G  L  E  M  Q  T  F  F  F  *  *  P  T  N  I  G  G  R  M  V  H  L  *  N  S  V  V  N  R  S  N  S  T  V  L  A  F  M  K  V  Q  A  N  S  R  Y  S  L  I  G  I  A  H  E  S  L  *  E  N  A  S  T  L  *  N  S  R  G  V  C  K  L  T  R  T  T  I  I  K  E  K  E  I  I  G  F  L  L  L  V  D  *  Y  *  T  S  S  F  S  *  L  F  M  N  F  I  L  Q  *  V  T  A  *  T  S  Q  H  N  R  S  N  R  S  R  S  S  T  V  Y  *  G  R  E  R  L  F  P  Q  I  S  R  H  R  R  L  H  *  *  W  S  P  Q  K  F  S  P  *  S  A  D  S  *  L  A  R  R  K  P  F  C  S  R  T  T  T  *  R  G  *  S  T  R  A  R  I  S  Y  Q  K  *  *  G  S  V  S  P  H  C  C  C  C  S  V  Y  *  E  Q  K  L  Q  *  G  V  V  I  V  V  V  A  L  S  T  K  E  *  K  F  K  *  V  V  V  S  I  F  V  Q  *  V  L  V  V  F  Y  M  *  Y  F  A  A  V  T  L  Q  F  L  *  K  A  R  H  *  K  V  K  L  P  C  Y  E  S  F </first_frame>
            <second_frame>  F  Q  L  I  L  V  W  I  Y  S  L  T  C  L  F  I  N  S  V  S  F  N  S  R  S  T  *  H  L  M  K  F  G  R  Q  K  L  N  N  *  R  K  D  Y  Y  M  K  S  L  Y  *  S  Y  Y  K  I  P  Y  K  L  D  Q  S  S  Y  K  *  S  K  K  W  K  K  *  S  T  N  T  L  K  *  M  V  *  S  S  I  *  L  K  L  E  V  G  F  L  Q  L  W  C  S  Y  M  D  S  L  K  F  G  I  L  G  G  T  R  *  K  L  *  L  K  R  V  T  E  L  L  H  P  I  T  E  D  M  G  Y  R  I  N  Q  P  N  P  R  K  P  H  S  S  I  L  S  V  T  S  L  H  F  L  M  L  L  I  S  L  R :   F  F  S  L  V  K  T  L  D  L  L  S  F  R  I  F  P  F  S  T  R  R  E  S  L  D  L  L  L  W  G  C  H  F  C  L  Q  N  L  L  S  L  K  K  A  S  L  K  D  S  I  F  R  D  L  G :   Y  L  G  E  L  K  L  I  L  V  V  L  T  P  K  Q  *  *  G  M  Y  T  F  F  S  P  E  V  N  Y  Q  *  P  M  K  I  R  K  S  W  T  L  C  N  L  Q  L  L  C  P  L  G  S  P  R  K  T  W  L  R  M  E  L  C  T  K  N  L  D  S  E  L  H  C  R  F  P  I  G  I  M  H  *  H  L  L  Y  V  Y  S  I  L  L  R  V  F  K  N  T  V  G  Y  V  S  D  P  P  K  P  V  Y  L  *  R  I  *  H  W  C  N  N  V  F  K  *  E  G  P  *  Q  Y  R  F  Y  L  N  R  N  F  P  I  H  Y  P  L  I  S  L  S  Y  T  I  P  T  S  L  W  *  S  F  T  A  L  V  W  R  C  R  L  S  F  F  D  N  R  Q  I  L  E  G  E  W  C  T  F  R  T  R  W  L  I  G  P  T  L  L  Y  *  H  S  *  K  Y  K  Q  I  Q  D  I  A  L  *  E  L  H  M  R  V  Y  E  K  M  H  Q  L  C  K  I  V  E  V  F  A  S  *  L  E  Q  P  L  *  K  K  K  K  L  *  D  F  F  C  L  L  I  N  T  E  P  L  P  F  L  S  C  L  *  I  S  S  C  N  R  S  L  H  E  Q  V  N  I  T  D  P  T  V  H  V  Q  A  L  Y  I  K  G  E  K  D  Y  F  L  K  F  P  G  I  E  D  Y  I  S  S  G  V  L  K  S  L  V  P  N  L  Q  I  V  N  L  P  E  G  N  H  F  V  Q  E  Q  L  P  D  E  V  N  Q  L  V  L  E  F  L  T  K  N  S  K  V  Q  *  V  L  I  V  V  A  A  P  S  T  K  N  R  S  S  N  K  A  L  L  L  L  L  L  L  Y  L  L  R  N  R  S  S  N  K  L  L  F  Q  F  S  F  S  K  S  *  L  C  F  T  C  N  I  L  L  Q  *  P  C  N  S  Y  K  K  Q  G  T  E  R  *  N  Y  H  V  M  K  A   </second_frame>
            <third_frame>   F  S  L  Y  *  C  G  S  T  H  *  L  V  Y  L  L  I  Q  C  H  L  I  A  V  P  P  N  I  *  *  N  L  A  G  K  N  *  T  I  K  E  K  T  I  I  *  S  H  S  T  K  V  I  I  K  S  H  T  N  L  I  N  L  L  T  N  K  A  K  N  G  R  N  R  A  Q  I  H  *  S  E  W  S  K  A  P  Y  S  *  N  W  K  W  V  F  S  S  C  G  V  L  T  W  I  P  *  N  L  V  F  L  E  V  P  D  E  S  C  S  *  S  G  L  Q  S  Y  C  T  R  L  Q  R  I  W  V  I  G  S  T  N  P  T  R  E  N  H  I  P  R  S  C  Q  *  P  P  C  T  S  *  C  S  *  Y  L  *   : G  F  S  R  W  *  R  L  W  I  F  C  H  F  V  F  F  H  S  P  Q  G  E  S  L  W  I  Y  C  Y  G  G  A  I  F  A  S  K  T  S  *  V  *  K  R  P  P  *  R  I  L  Y  F  E  I  W   : D  T  W  E  S  *  S  *  F  W  S  S  *  R  Q  N  S  S  E  E  C  I  H  S  F  L  Q  K  *  I  T  N  S  Q  *  R  S  G  N  H  G  H  C  A  T  F  N  S  S  A  P  L  V  L  R  G  R  P  G  C  V  W  S  F  V  R  K  I  W  I  P  N  C  I  A  G  S  L  *  V  S  C  T  N  I  Y  C  M  F  I  L  S  C  L  E  S  S  K  I  L  L  V  M  C  R  I  L  Q  N  L  C  I  F  R  G  S  D  T  G  A  T  T  F  L  N  R  R  G  P  N  N  I  G  F  I  *  T  G  I  S  P  F  T  T  L  L  S  H  S  H  T  L  Y  Q  H  H  C  G  S  H  S  Q  P  W  S  G  D  A  D  F  L  F  L  I  T  D  K  Y  W  R  E  N  G  A  P  L  E  L  G  G  *  S  V  Q  L  Y  C  T  S  I  H  E  S  T  S  K  F  K  I  *  P  Y  R  N  C  T  *  E  F  M  R  K  C  I  N  F  V  K  *  S  R  C  L  Q  A  D  S  N  N  H  Y  K  R  K  R  N  Y  R  I  S  F  A  C  *  L  I  L  N  L  F  L  F  L  V  V  Y  E  F  H  L  A  I  G  H  C  M  N  K  S  T  *  Q  I  Q  P  F  T  F  K  H  C  I  L  R  E  R  K  I  I  S  S  N  F  Q  A  S  K  I  T  L  V  V  E  S  S  K  V  *  S  L  I  C  R  *  L  T  C  Q  K  E  T  I  L  F  K  N  N  Y  L  T  R  L  I  N  S  C  S  N  F  L  P  K  I  V  R  F  S  K  S  S  L  L  L  L  L  R  L  L  R  T  E  A  P  I  R  R  C  Y  C  C  C  C  S  I  Y  *  G  I  E  V  Q  I  S  C  C  F  N  F  R  S  V  S  P  S  C  V  L  H  V  I  F  C  C  S  D  P  A  I  P  I  K  S  K  A  L  K  G  E  I  T  M  L  *  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47409" stop="47095"/>
                    <exon start="46943" stop="46776"/>
                    <exon start="46676" stop="46395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFLQIKQKMEEIEHKYIEVNGLKLHIAEIGSGFSPVVVFLHGFPEIWYSWRYQMKAVAKAGYRAIAPDYRGYGLSDQPTQPEKTTFLDLVSDLLALLDALNISKVFLVGKDFGSFVISYFSILHKERVSGFIVMGVPFLPPKPLEFKKGLPEGFYISRFGIPGRAEADFGRLDAKTVVRNVYILFSRSELPIANEDQEIMDIVQPSTPLPPWFSEEDLAAYGALYEKSGFRTALQVPYRYHALTSTVCLFYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45877" stop="45605"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSCNRSLHEQVNITDPTVHVQALYIKGEKDYFLKFPGIEDYISSGVLKSLVPNLQIVNLPEGNHFVQEQLPDEVNQLVLEFLTKNSKVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="47370" e_stop="47316"/>
            <exon e_start="47264" e_stop="47095"/>
            <exon e_start="46943" e_stop="46776"/>
            <exon e_start="46676" e_stop="46441"/>
            <exon e_start="45860" e_stop="45304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.909"/>
          <exon-intron don_prob="1.000" acc_prob="0.848" e_score="0.993"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="47370" e_stop="47316" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47315" i_stop="47265" i_length="51"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="47264" e_stop="47095" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.848">
            <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46943" e_stop="46776" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46676" e_stop="46441" e_length="236"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.969">
            <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="45860" e_stop="45304" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47370" stop="47316"/>
              <exon start="47264" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47224" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47131" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47131" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46940" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553606" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46922" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46915" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46910" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46866" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553712" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46864" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46860" stop="46776"/>
              <exon start="46676" stop="46471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46853" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46801" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46785" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46785" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46629" stop="46441"/>
              <exon start="45860" stop="45304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46514" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46514" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46496" stop="46441"/>
              <exon start="45860" stop="45362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45854" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45542" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAAATTGGAA : ATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG : GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG : ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG : GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTCTCTTTCTTTGCTATGTTATATTATGAATGTTAACTGATTACCTTAAAAGTAGAGATTT</gDNA_template>
            <first_frame> E  H  K  Y  I  E  V  N  G  L  K  L  H  I  A  E  I  G   : N  S  W  R  Y  Q  M  K  A  V  A  K  A  G  Y  R  A  I  A  P  D  Y  R  G  Y  G  L  S  D  Q  P  T  Q  P  E  K  T  T  F  L  D  L  V  S  D  L  L  A  L  L  D  A  L  N  I  S  K  :  V  F  L  V  G  K  D  F  G  S  F  V  I  S  Y  F  S  I  L  H  K  E  R  V  S  G  F  I  V  M  G  V  P  F  L  P  P  K  P  L  E  F  K  K  G  L  P  E  G  F  Y  I  S  R  F  G  :  I  P  G  R  A  E  A  D  F  G  R  L  D  A  K  T  V  V  R  N  V  Y  I  L  F  S  R  S  E  L  P  I  A  N  E  D  Q  E  I  M  D  I  V  Q  P  S  T  P  L  P  P  W  F  S  E  E  D  L  A  A  Y  G  A  L  Y  E  K  S  G  F  R  T  A  L  Q  V  P  Y  R :   S  L  H  E  Q  V  N  I  T  D  P  T  V  H  V  Q  A  L  Y  I  K  G  E  K  D  Y  F  L  K  F  P  G  I  E  D  Y  I  S  S  G  V  L  K  S  L  V  P  N  L  Q  I  V  N  L  P  E  G  N  H  F  V  Q  E  Q  L  P  D  E  V  N  Q  L  V  L  E  F  L  T  K  N  S  K  V  Q  *  V  L  I  V  V  A  A  P  S  T  K  N  R  S  S  N  K  A  L  L  L  L  L  L  L  Y  L  L  R  N  R  S  S  N  K  L  L  F  Q  F  S  F  S  K  S  *  L  C  F  T  C  N  I  L  L  Q  *  P  C  N  S  Y  K  K  Q  G  T  E  R  *  N  Y  H  V  M  K  A  L  F  H  L  S  F  F  A  M  L  Y  Y  E  C  *  L  I  T  L  K  V  E  I  </first_frame>
            <second_frame>  S  T  N  T  L  K  *  M  V  *  S  S  I  *  L  K  L  E  :  I  L  G  G  T  R  *  K  L  *  L  K  R  V  T  E  L  L  H  P  I  T  E  D  M  G  Y  R  I  N  Q  P  N  P  R  K  P  H  S  S  I  L  S  V  T  S  L  H  F  L  M  L  L  I  S  L  R :   F  F  S  L  V  K  T  L  D  L  L  S  F  R  I  F  P  F  S  T  R  R  E  S  L  D  L  L  L  W  G  C  H  F  C  L  Q  N  L  L  S  L  K  K  A  S  L  K  D  S  I  F  R  D  L  G :   Y  L  G  E  L  K  L  I  L  V  V  L  T  P  K  Q  *  *  G  M  Y  T  F  F  S  P  E  V  N  Y  Q  *  P  M  K  I  R  K  S  W  T  L  C  N  L  Q  L  L  C  P  L  G  S  P  R  K  T  W  L  R  M  E  L  C  T  K  N  L  D  S  E  L  H  C  R  F  P  I   : G  H  C  M  N  K  S  T  *  Q  I  Q  P  F  T  F  K  H  C  I  L  R  E  R  K  I  I  S  S  N  F  Q  A  S  K  I  T  L  V  V  E  S  S  K  V  *  S  L  I  C  R  *  L  T  C  Q  K  E  T  I  L  F  K  N  N  Y  L  T  R  L  I  N  S  C  S  N  F  L  P  K  I  V  R  F  S  K  S  S  L  L  L  L  L  R  L  L  R  T  E  A  P  I  R  R  C  Y  C  C  C  C  S  I  Y  *  G  I  E  V  Q  I  S  C  C  F  N  F  R  S  V  S  P  S  C  V  L  H  V  I  F  C  C  S  D  P  A  I  P  I  K  S  K  A  L  K  G  E  I  T  M  L  *  K  L  C  S  I  S  L  S  L  L  C  Y  I  M  N  V  N  *  L  P  *  K  *  R  F </second_frame>
            <third_frame>   A  Q  I  H  *  S  E  W  S  K  A  P  Y  S  *  N  W  K :   F  L  E  V  P  D  E  S  C  S  *  S  G  L  Q  S  Y  C  T  R  L  Q  R  I  W  V  I  G  S  T  N  P  T  R  E  N  H  I  P  R  S  C  Q  *  P  P  C  T  S  *  C  S  *  Y  L  *   : G  F  S  R  W  *  R  L  W  I  F  C  H  F  V  F  F  H  S  P  Q  G  E  S  L  W  I  Y  C  Y  G  G  A  I  F  A  S  K  T  S  *  V  *  K  R  P  P  *  R  I  L  Y  F  E  I  W   : D  T  W  E  S  *  S  *  F  W  S  S  *  R  Q  N  S  S  E  E  C  I  H  S  F  L  Q  K  *  I  T  N  S  Q  *  R  S  G  N  H  G  H  C  A  T  F  N  S  S  A  P  L  V  L  R  G  R  P  G  C  V  W  S  F  V  R  K  I  W  I  P  N  C  I  A  G  S  L  *  :  V  T  A  *  T  S  Q  H  N  R  S  N  R  S  R  S  S  T  V  Y  *  G  R  E  R  L  F  P  Q  I  S  R  H  R  R  L  H  *  *  W  S  P  Q  K  F  S  P  *  S  A  D  S  *  L  A  R  R  K  P  F  C  S  R  T  T  T  *  R  G  *  S  T  R  A  R  I  S  Y  Q  K  *  *  G  S  V  S  P  H  C  C  C  C  S  V  Y  *  E  Q  K  L  Q  *  G  V  V  I  V  V  V  A  L  S  T  K  E  *  K  F  K  *  V  V  V  S  I  F  V  Q  *  V  L  V  V  F  Y  M  *  Y  F  A  A  V  T  L  Q  F  L  *  K  A  R  H  *  K  V  K  L  P  C  Y  E  S  F  V  P  S  L  F  L  C  Y  V  I  L  *  M  L  T  D  Y  L  K  S  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47370" stop="47316"/>
                    <exon start="47264" stop="47095"/>
                    <exon start="46943" stop="46776"/>
                    <exon start="46676" stop="46441"/>
                    <exon start="45860" stop="45605"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHKYIEVNGLKLHIAEIGNSWRYQMKAVAKAGYRAIAPDYRGYGLSDQPTQPEKTTFLDLVSDLLALLDALNISKVFLVGKDFGSFVISYFSILHKERVSGFIVMGVPFLPPKPLEFKKGLPEGFYISRFGIPGRAEADFGRLDAKTVVRNVYILFSRSELPIANEDQEIMDIVQPSTPLPPWFSEEDLAAYGALYEKSGFRTALQVPYRSLHEQVNITDPTVHVQALYIKGEKDYFLKFPGIEDYISSGVLKSLVPNLQIVNLPEGNHFVQEQLPDEVNQLVLEFLTKNSKVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="47370" e_stop="47323"/>
            <exon e_start="47271" e_stop="47095"/>
            <exon e_start="46943" e_stop="46776"/>
            <exon e_start="46676" e_stop="46441"/>
            <exon e_start="45860" e_stop="45304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47370" e_stop="47323" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47322" i_stop="47272" i_length="51"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47271" e_stop="47095" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.848">
            <gDNA_intron_boundary i_start="47094" i_stop="46944" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46943" e_stop="46776" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46775" i_stop="46677" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46676" e_stop="46441" e_length="236"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.969">
            <gDNA_intron_boundary i_start="46440" i_stop="45861" i_length="580"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="45860" e_stop="45304" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47370" stop="47323"/>
              <exon start="47271" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47244" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47224" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47131" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47131" stop="47095"/>
              <exon start="46943" stop="46776"/>
              <exon start="46676" stop="46568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46940" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553606" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46922" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46915" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46910" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46866" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553712" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46864" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46860" stop="46776"/>
              <exon start="46676" stop="46471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46853" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46801" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46785" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46785" stop="46776"/>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46676" stop="46441"/>
              <exon start="45860" stop="45817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46629" stop="46441"/>
              <exon start="45860" stop="45304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46514" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46514" stop="46441"/>
              <exon start="45860" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46496" stop="46441"/>
              <exon start="45860" stop="45362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45854" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45542" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCACAAATACATTGAAGTGAATGGTCTAAAGCTCCATATAGCTGAA : ATTTGGTATTCTTGGAGGTACCAGATGAAAGCTGTAGCTAAAGCGGGTTACAGAGCTATTGCACCCGATTACAGAGGATATGGGTTATCGGATCAACCAACCCAACCCGAGAAAACCACATTCCTCGATCTTGTCAGTGACCTCCTTGCACTTCTTGATGCTCTTAATATCTCTAAG : GTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGG : ATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAG : GTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTTGTTCCATCTCTCTTTCTTTGCTATGTTATATTATGAATGTTAACTGATTACCTTAAAAGTAGAGATTT</gDNA_template>
            <first_frame> E  H  K  Y  I  E  V  N  G  L  K  L  H  I  A  E  :  I  W  Y  S  W  R  Y  Q  M  K  A  V  A  K  A  G  Y  R  A  I  A  P  D  Y  R  G  Y  G  L  S  D  Q  P  T  Q  P  E  K  T  T  F  L  D  L  V  S  D  L  L  A  L  L  D  A  L  N  I  S  K  :  V  F  L  V  G  K  D  F  G  S  F  V  I  S  Y  F  S  I  L  H  K  E  R  V  S  G  F  I  V  M  G  V  P  F  L  P  P  K  P  L  E  F  K  K  G  L  P  E  G  F  Y  I  S  R  F  G  :  I  P  G  R  A  E  A  D  F  G  R  L  D  A  K  T  V  V  R  N  V  Y  I  L  F  S  R  S  E  L  P  I  A  N  E  D  Q  E  I  M  D  I  V  Q  P  S  T  P  L  P  P  W  F  S  E  E  D  L  A  A  Y  G  A  L  Y  E  K  S  G  F  R  T  A  L  Q  V  P  Y  R :   S  L  H  E  Q  V  N  I  T  D  P  T  V  H  V  Q  A  L  Y  I  K  G  E  K  D  Y  F  L  K  F  P  G  I  E  D  Y  I  S  S  G  V  L  K  S  L  V  P  N  L  Q  I  V  N  L  P  E  G  N  H  F  V  Q  E  Q  L  P  D  E  V  N  Q  L  V  L  E  F  L  T  K  N  S  K  V  Q  *  V  L  I  V  V  A  A  P  S  T  K  N  R  S  S  N  K  A  L  L  L  L  L  L  L  Y  L  L  R  N  R  S  S  N  K  L  L  F  Q  F  S  F  S  K  S  *  L  C  F  T  C  N  I  L  L  Q  *  P  C  N  S  Y  K  K  Q  G  T  E  R  *  N  Y  H  V  M  K  A  L  F  H  L  S  F  F  A  M  L  Y  Y  E  C  *  L  I  T  L  K  V  E  I  </first_frame>
            <second_frame>  S  T  N  T  L  K  *  M  V  *  S  S  I  *  L  K :   F  G  I  L  G  G  T  R  *  K  L  *  L  K  R  V  T  E  L  L  H  P  I  T  E  D  M  G  Y  R  I  N  Q  P  N  P  R  K  P  H  S  S  I  L  S  V  T  S  L  H  F  L  M  L  L  I  S  L  R :   F  F  S  L  V  K  T  L  D  L  L  S  F  R  I  F  P  F  S  T  R  R  E  S  L  D  L  L  L  W  G  C  H  F  C  L  Q  N  L  L  S  L  K  K  A  S  L  K  D  S  I  F  R  D  L  G :   Y  L  G  E  L  K  L  I  L  V  V  L  T  P  K  Q  *  *  G  M  Y  T  F  F  S  P  E  V  N  Y  Q  *  P  M  K  I  R  K  S  W  T  L  C  N  L  Q  L  L  C  P  L  G  S  P  R  K  T  W  L  R  M  E  L  C  T  K  N  L  D  S  E  L  H  C  R  F  P  I   : G  H  C  M  N  K  S  T  *  Q  I  Q  P  F  T  F  K  H  C  I  L  R  E  R  K  I  I  S  S  N  F  Q  A  S  K  I  T  L  V  V  E  S  S  K  V  *  S  L  I  C  R  *  L  T  C  Q  K  E  T  I  L  F  K  N  N  Y  L  T  R  L  I  N  S  C  S  N  F  L  P  K  I  V  R  F  S  K  S  S  L  L  L  L  L  R  L  L  R  T  E  A  P  I  R  R  C  Y  C  C  C  C  S  I  Y  *  G  I  E  V  Q  I  S  C  C  F  N  F  R  S  V  S  P  S  C  V  L  H  V  I  F  C  C  S  D  P  A  I  P  I  K  S  K  A  L  K  G  E  I  T  M  L  *  K  L  C  S  I  S  L  S  L  L  C  Y  I  M  N  V  N  *  L  P  *  K  *  R  F </second_frame>
            <third_frame>   A  Q  I  H  *  S  E  W  S  K  A  P  Y  S  *   : N  L  V  F  L  E  V  P  D  E  S  C  S  *  S  G  L  Q  S  Y  C  T  R  L  Q  R  I  W  V  I  G  S  T  N  P  T  R  E  N  H  I  P  R  S  C  Q  *  P  P  C  T  S  *  C  S  *  Y  L  *   : G  F  S  R  W  *  R  L  W  I  F  C  H  F  V  F  F  H  S  P  Q  G  E  S  L  W  I  Y  C  Y  G  G  A  I  F  A  S  K  T  S  *  V  *  K  R  P  P  *  R  I  L  Y  F  E  I  W   : D  T  W  E  S  *  S  *  F  W  S  S  *  R  Q  N  S  S  E  E  C  I  H  S  F  L  Q  K  *  I  T  N  S  Q  *  R  S  G  N  H  G  H  C  A  T  F  N  S  S  A  P  L  V  L  R  G  R  P  G  C  V  W  S  F  V  R  K  I  W  I  P  N  C  I  A  G  S  L  *  :  V  T  A  *  T  S  Q  H  N  R  S  N  R  S  R  S  S  T  V  Y  *  G  R  E  R  L  F  P  Q  I  S  R  H  R  R  L  H  *  *  W  S  P  Q  K  F  S  P  *  S  A  D  S  *  L  A  R  R  K  P  F  C  S  R  T  T  T  *  R  G  *  S  T  R  A  R  I  S  Y  Q  K  *  *  G  S  V  S  P  H  C  C  C  C  S  V  Y  *  E  Q  K  L  Q  *  G  V  V  I  V  V  V  A  L  S  T  K  E  *  K  F  K  *  V  V  V  S  I  F  V  Q  *  V  L  V  V  F  Y  M  *  Y  F  A  A  V  T  L  Q  F  L  *  K  A  R  H  *  K  V  K  L  P  C  Y  E  S  F  V  P  S  L  F  L  C  Y  V  I  L  *  M  L  T  D  Y  L  K  S  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47370" stop="47323"/>
                    <exon start="47271" stop="47095"/>
                    <exon start="46943" stop="46776"/>
                    <exon start="46676" stop="46441"/>
                    <exon start="45860" stop="45605"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHKYIEVNGLKLHIAEIWYSWRYQMKAVAKAGYRAIAPDYRGYGLSDQPTQPEKTTFLDLVSDLLALLDALNISKVFLVGKDFGSFVISYFSILHKERVSGFIVMGVPFLPPKPLEFKKGLPEGFYISRFGIPGRAEADFGRLDAKTVVRNVYILFSRSELPIANEDQEIMDIVQPSTPLPPWFSEEDLAAYGALYEKSGFRTALQVPYRSLHEQVNITDPTVHVQALYIKGEKDYFLKFPGIEDYISSGVLKSLVPNLQIVNLPEGNHFVQEQLPDEVNQLVLEFLTKNSKVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="47032" e_stop="45372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47032" e_stop="45372" e_length="1661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47032" stop="46204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46582" stop="45773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45854" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45542" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGTTTGCTGGATAGAAATTTTAGTTTTTATTAAGTTTAATTATATCTTTGTTCCTATTTCATCTCTGTGTCTGCTCAATAATGTAGGTTTTTCTCGTTGGTAAAGACTTTGGATCTTTTGTCATTTCGTATTTTTCCATTCTCCACAAGGAGAGAGTCTCTGGATTTATTGTTATGGGGGTGCCATTTTTGCCTCCAAAACCTCTTGAGTTTAAAAAAGGCCTCCCTGAAGGATTCTATATTTCGAGATTTGGGGTATGTTAATATGTTTTTGATCTCTAATTTGCTTTCGTATCATTAATAGAGCTCTCTCTTGGTCAATTTTACATAGGTATACATTTTAATTGTTTGCAGATACCTGGGAGAGCTGAAGCTGATTTTGGTCGTCTTGACGCCAAAACAGTAGTGAGGAATGTATACATTCTTTTCTCCAGAAGTGAATTACCAATAGCCAATGAAGATCAGGAAATCATGGACATTGTGCAACCTTCAACTCCTCTGCCCCCTTGGTTCTCCGAGGAAGACCTGGCTGCGTATGGAGCTTTGTACGAAAAATCTGGATTCCGAACTGCATTGCAGGTTCCCTATAGGTATCATGCACTAACATCTACTGTATGTTTATTCTATCTTGCTTAGAGTCTTCAAAAATACTGTTGGTTATGTGTCGGATCCTCCAAAACCTGTGTATCTTTAGAGGATCTGACACTGGTGCAACAACGTTTTTAAATAGGAGGGGCCCTAACAATATAGGTTTTATTTGAACCGGAATTTCCCCATTCACTACCCTCTTATCTCACTCTCATACACTATACCAACATCATTGTGGTAGTCATTCACAGCCCTGGTCTGGAGATGCAGACTTTCTTTTTTTGATAACCGACAAATATTGGAGGGAGAATGGTGCACCTTTAGAACTCGGTGGTTAATCGGTCCAACTCTACTGTACTAGCATTCATGAAAGTACAAGCAAATTCAAGATATAGCCTTATAGGAATTGCACATGAGAGTTTATGAGAAAATGCATCAACTTTGTAAAATAGTCGAGGTGTTTGCAAGCTGACTCGAACAACCATTATAAAAGAAAAAGAAATTATAGGATTTCTTTTGCTTGTTGATTAATACTGAACCTCTTCCTTTTCTTAGTTGTTTATGAATTTCATCTTGCAATAGGTCACTGCATGAACAAGTCAACATAACAGATCCAACCGTTCACGTTCAAGCACTGTATATTAAGGGAGAGAAAGATTATTTCCTCAAATTTCCAGGCATCGAAGATTACATTAGTAGTGGAGTCCTCAAAAGTTTAGTCCCTAATCTGCAGATAGTTAACTTGCCAGAAGGAAACCATTTTGTTCAAGAACAACTACCTGACGAGGTTAATCAACTCGTGCTCGAATTTCTTACCAAAAATAGTAAGGTTCAGTAAGTCCTCATTGTTGTTGCTGCTCCGTCTACTAAGAACAGAAGCTCCAATAAGGCGTTGTTATTGTTGTTGTTGCTCTATCTACTAAGGAATAGAAGTTCAAATAAGTTGTTGTTTCAATTTTCGTTCAGTAAGTCCTAGTTGTGTTTTACATGTAATATTTTGCTGCAGTGACCCTGCAATTCCTATAAAAAGCAAGGCACTGAAAGGTGAAATTACCATGTTATGAAAGCTTT</gDNA_template>
            <first_frame> *  S  L  L  D  R  N  F  S  F  Y  *  V  *  L  Y  L  C  S  Y  F  I  S  V  S  A  Q  *  C  R  F  F  S  L  V  K  T  L  D  L  L  S  F  R  I  F  P  F  S  T  R  R  E  S  L  D  L  L  L  W  G  C  H  F  C  L  Q  N  L  L  S  L  K  K  A  S  L  K  D  S  I  F  R  D  L  G  Y  V  N  M  F  L  I  S  N  L  L  S  Y  H  *  *  S  S  L  L  V  N  F  T  *  V  Y  I  L  I  V  C  R  Y  L  G  E  L  K  L  I  L  V  V  L  T  P  K  Q  *  *  G  M  Y  T  F  F  S  P  E  V  N  Y  Q  *  P  M  K  I  R  K  S  W  T  L  C  N  L  Q  L  L  C  P  L  G  S  P  R  K  T  W  L  R  M  E  L  C  T  K  N  L  D  S  E  L  H  C  R  F  P  I  G  I  M  H  *  H  L  L  Y  V  Y  S  I  L  L  R  V  F  K  N  T  V  G  Y  V  S  D  P  P  K  P  V  Y  L  *  R  I  *  H  W  C  N  N  V  F  K  *  E  G  P  *  Q  Y  R  F  Y  L  N  R  N  F  P  I  H  Y  P  L  I  S  L  S  Y  T  I  P  T  S  L  W  *  S  F  T  A  L  V  W  R  C  R  L  S  F  F  D  N  R  Q  I  L  E  G  E  W  C  T  F  R  T  R  W  L  I  G  P  T  L  L  Y  *  H  S  *  K  Y  K  Q  I  Q  D  I  A  L  *  E  L  H  M  R  V  Y  E  K  M  H  Q  L  C  K  I  V  E  V  F  A  S  *  L  E  Q  P  L  *  K  K  K  K  L  *  D  F  F  C  L  L  I  N  T  E  P  L  P  F  L  S  C  L  *  I  S  S  C  N  R  S  L  H  E  Q  V  N  I  T  D  P  T  V  H  V  Q  A  L  Y  I  K  G  E  K  D  Y  F  L  K  F  P  G  I  E  D  Y  I  S  S  G  V  L  K  S  L  V  P  N  L  Q  I  V  N  L  P  E  G  N  H  F  V  Q  E  Q  L  P  D  E  V  N  Q  L  V  L  E  F  L  T  K  N  S  K  V  Q  *  V  L  I  V  V  A  A  P  S  T  K  N  R  S  S  N  K  A  L  L  L  L  L  L  L  Y  L  L  R  N  R  S  S  N  K  L  L  F  Q  F  S  F  S  K  S  *  L  C  F  T  C  N  I  L  L  Q  *  P  C  N  S  Y  K  K  Q  G  T  E  R  *  N  Y  H  V  M  K  A   </first_frame>
            <second_frame>  K  V  C  W  I  E  I  L  V  F  I  K  F  N  Y  I  F  V  P  I  S  S  L  C  L  L  N  N  V  G  F  S  R  W  *  R  L  W  I  F  C  H  F  V  F  F  H  S  P  Q  G  E  S  L  W  I  Y  C  Y  G  G  A  I  F  A  S  K  T  S  *  V  *  K  R  P  P  *  R  I  L  Y  F  E  I  W  G  M  L  I  C  F  *  S  L  I  C  F  R  I  I  N  R  A  L  S  W  S  I  L  H  R  Y  T  F  *  L  F  A  D  T  W  E  S  *  S  *  F  W  S  S  *  R  Q  N  S  S  E  E  C  I  H  S  F  L  Q  K  *  I  T  N  S  Q  *  R  S  G  N  H  G  H  C  A  T  F  N  S  S  A  P  L  V  L  R  G  R  P  G  C  V  W  S  F  V  R  K  I  W  I  P  N  C  I  A  G  S  L  *  V  S  C  T  N  I  Y  C  M  F  I  L  S  C  L  E  S  S  K  I  L  L  V  M  C  R  I  L  Q  N  L  C  I  F  R  G  S  D  T  G  A  T  T  F  L  N  R  R  G  P  N  N  I  G  F  I  *  T  G  I  S  P  F  T  T  L  L  S  H  S  H  T  L  Y  Q  H  H  C  G  S  H  S  Q  P  W  S  G  D  A  D  F  L  F  L  I  T  D  K  Y  W  R  E  N  G  A  P  L  E  L  G  G  *  S  V  Q  L  Y  C  T  S  I  H  E  S  T  S  K  F  K  I  *  P  Y  R  N  C  T  *  E  F  M  R  K  C  I  N  F  V  K  *  S  R  C  L  Q  A  D  S  N  N  H  Y  K  R  K  R  N  Y  R  I  S  F  A  C  *  L  I  L  N  L  F  L  F  L  V  V  Y  E  F  H  L  A  I  G  H  C  M  N  K  S  T  *  Q  I  Q  P  F  T  F  K  H  C  I  L  R  E  R  K  I  I  S  S  N  F  Q  A  S  K  I  T  L  V  V  E  S  S  K  V  *  S  L  I  C  R  *  L  T  C  Q  K  E  T  I  L  F  K  N  N  Y  L  T  R  L  I  N  S  C  S  N  F  L  P  K  I  V  R  F  S  K  S  S  L  L  L  L  L  R  L  L  R  T  E  A  P  I  R  R  C  Y  C  C  C  C  S  I  Y  *  G  I  E  V  Q  I  S  C  C  F  N  F  R  S  V  S  P  S  C  V  L  H  V  I  F  C  C  S  D  P  A  I  P  I  K  S  K  A  L  K  G  E  I  T  M  L  *  K  L  </second_frame>
            <third_frame>   K  F  A  G  *  K  F  *  F  L  L  S  L  I  I  S  L  F  L  F  H  L  C  V  C  S  I  M  *  V  F  L  V  G  K  D  F  G  S  F  V  I  S  Y  F  S  I  L  H  K  E  R  V  S  G  F  I  V  M  G  V  P  F  L  P  P  K  P  L  E  F  K  K  G  L  P  E  G  F  Y  I  S  R  F  G  V  C  *  Y  V  F  D  L  *  F  A  F  V  S  L  I  E  L  S  L  G  Q  F  Y  I  G  I  H  F  N  C  L  Q  I  P  G  R  A  E  A  D  F  G  R  L  D  A  K  T  V  V  R  N  V  Y  I  L  F  S  R  S  E  L  P  I  A  N  E  D  Q  E  I  M  D  I  V  Q  P  S  T  P  L  P  P  W  F  S  E  E  D  L  A  A  Y  G  A  L  Y  E  K  S  G  F  R  T  A  L  Q  V  P  Y  R  Y  H  A  L  T  S  T  V  C  L  F  Y  L  A  *  S  L  Q  K  Y  C  W  L  C  V  G  S  S  K  T  C  V  S  L  E  D  L  T  L  V  Q  Q  R  F  *  I  G  G  A  L  T  I  *  V  L  F  E  P  E  F  P  H  S  L  P  S  Y  L  T  L  I  H  Y  T  N  I  I  V  V  V  I  H  S  P  G  L  E  M  Q  T  F  F  F  *  *  P  T  N  I  G  G  R  M  V  H  L  *  N  S  V  V  N  R  S  N  S  T  V  L  A  F  M  K  V  Q  A  N  S  R  Y  S  L  I  G  I  A  H  E  S  L  *  E  N  A  S  T  L  *  N  S  R  G  V  C  K  L  T  R  T  T  I  I  K  E  K  E  I  I  G  F  L  L  L  V  D  *  Y  *  T  S  S  F  S  *  L  F  M  N  F  I  L  Q  *  V  T  A  *  T  S  Q  H  N  R  S  N  R  S  R  S  S  T  V  Y  *  G  R  E  R  L  F  P  Q  I  S  R  H  R  R  L  H  *  *  W  S  P  Q  K  F  S  P  *  S  A  D  S  *  L  A  R  R  K  P  F  C  S  R  T  T  T  *  R  G  *  S  T  R  A  R  I  S  Y  Q  K  *  *  G  S  V  S  P  H  C  C  C  C  S  V  Y  *  E  Q  K  L  Q  *  G  V  V  I  V  V  V  A  L  S  T  K  E  *  K  F  K  *  V  V  V  S  I  F  V  Q  *  V  L  V  V  F  Y  M  *  Y  F  A  A  V  T  L  Q  F  L  *  K  A  R  H  *  K  V  K  L  P  C  Y  E  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46748" stop="46395"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAFVSLIELSLGQFYIGIHFNCLQIPGRAEADFGRLDAKTVVRNVYILFSRSELPIANEDQEIMDIVQPSTPLPPWFSEEDLAAYGALYEKSGFRTALQVPYRYHALTSTVCLFYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45877" stop="45605"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSCNRSLHEQVNITDPTVHVQALYIKGEKDYFLKFPGIEDYISSGVLKSLVPNLQIVNLPEGNHFVQEQLPDEVNQLVLEFLTKNSKVQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46948" stop="46730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRFFSLVKTLDLLSFRIFPFSTRRESLDLLLWGCHFCLQNLLSLKKASLKDSIFRDLGYVNMFLISNLLSYH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="54906" PGL_stop="57654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54906" e_stop="54957"/>
            <exon e_start="55483" e_stop="57654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54906" e_stop="54957" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="54958" i_stop="55482" i_length="525"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="55483" e_stop="57654" e_length="2172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54906" stop="54957"/>
              <exon start="55483" stop="57654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56093" stop="56555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56365" stop="57273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56367" stop="56861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57093" stop="57562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTTTCATTTCTCTCCGGCGAACTCCTTATCGGCGAGATCAATT : CAAGTGGCTGAGTGGAATAGAAGACCATGGAAGAAGAGTTAACTGATTTACTGTTGGAGGCTGCTGGTAGAACAAATACTGGTGGAAGGAATCGTCCACCTCATTCATCTAAAAGACATCACAAGAGTTCATATTCTGATGATGGAAGTGATTCCAGGGATGATGACTCTGATGATGGTCGTGGGTATTCAGGTCGAAAGCTTTCTGGTTCACAAGTTCCTCTCAAGAAGAGATTGGACCCTCAAGAAAGAGATGATGATCATAGCAGCCATGGAGAAGGCAATGATGGAGATGGTTATGGCAATGAGAGTGATGATGATTCTATTGGCAGTGATCTTTACAAGGACGATGATGACCGGCAAAAGCTTGCTCAGATGACTGAACTGGAAAGGGAAATGATATTGACTGATCGTGCAGCGAAGAAATCTGACAGGAGTCTGCATGACAAAATGATCAAGGATCGGGCCCAACCAAGGAAACAAAGCTCACCTCCTTCACATTCTCGTGGCATGCGCTCATCAACAAGAGCTTTGGATAGGGCAGCTGACAGAGATGATGCATTGAATGAGATACGAGCAAAACGAGCAAGACAGCAGCAGGATCCCGAGGGTCAATTCAAGCTGAGGGATGCAGCTAGAAAAGGTTCTGGAAGCAGGGGCTATTCACCTATCAAACGTAGAAGTTTTACAGCTGCATCTCTAGGTAGCAGTCCTACCAGGGGAGAAAGTGATTCACATAGTAATGAGGGAGATTCATCAGCTGATGATGGAATGGATGACAGTGATGATGACAAGTCATCACCGGAGTCACAGTTGCCAACATTTGAGGATATAAAAGAAATCTCTATTCGTCGTTCAAAACTGGCAAAATGGTTTATGGAGCCCTTCTTTGATGAGTTAATTGTGGGTTGCTTTGTAAGAGTTGGCATTGGGAGGTCAAGGTCTGGTCCTATCTATAGGCTCTGTGTGGTCCGCAATGTTGATGCTTCAGATCCTAATCGACAATACAAGCTAGAAAATAAAACCACATCCAAATTTCTAAATGTTGTTTGGGGCAATGAAAACTCTGCTGCTAGGTGGCAGATGGCTATGATTTCAGACTCTCCTCCTCTGAGGGATGAGTTTGATCAGTGGGTAAGGGAAGTAGAACGAAGTGGTGGTCGTATGCCTAGTAAGCAAGATGTGTTGGAAAAAAAAGAGGCCATACAGAAATCTAACACATTTGTTTACTCTGCTGACACTGTAAAGCAGATGTTGCAGCAGAAAAAATCTGCAACATGGAGGCCACTTAATGTTGCTGCTGAGAAGGATCGTTTGAGAAGGGATATGGAAGTGGCCAAAATGAAGAATGACGAAGCAGAAGTGGAGAGGATTAAGGCAAGACTGCAGGAACTGGAGGATAGCAGGAAGGTTCAAGAGAAAGATGACAAGGCCCGCAGGCTGGCTGAGATGAACCGGAAGAATAGGGTCGAGAATTTCAAAAATGCATCAGAACTCAGACCAGTGAATCAACTGTTGAAAGCTGGTGAGGCTGGGTATGATCCCTTCTCTAGAAGGTGGACTAGGTCTACAAATTATTTTGCAAAAGGTGCATCCAATGGTGAAGCTGCTGCAGCAGCAGCATTGGCAGCTGAAGATAACAATGGGGCTGGTGGAACTGCTGACGGAGGAATGGCAGCTACAGCAGCAGCCTTGCAGGCTGCAGCAGGCGCTGGGAAGTTGGTGGACACAAATGCTCCTGTAGATCAAGGAACAGAATCAAATACGCTACATGATTTCGATCTGCCTATCTCGTTGGCTGTGCTTCAGAAGTTTGGAGGGTCTCAAGGAGGCCAAGCAGGATTTATGGCTCGCAAACAGAGGATAGAAGCAACTGTTGGATGTAGCGTTCCGGAGAACGATGGCAGAAGACATGCACTAACTTTAAGTGTTAGTGACTACAAGAGAAGGAGAGGACTCCTTTGAGATTTACTGCTTTTGTTGTTTAGCCAAATGAATTGTTGTTACTGGGGATTCATGTACTAGCTGTGAATTAAGAGTACAGTTACTGCTATATTAAAATATGTTGAGACTTTTCTTGAATTTATGCTTCTATAGCAAAGACCTGGTTAACCAGGGGTCTTTTAAGCTTTAATGAGAAAAGCACTCCTTATTATTAACAATATTTCGAGTA</gDNA_template>
            <first_frame> F  F  F  F  S  F  L  S  G  E  L  L  I  G  E  I  N   : S  S  G  *  V  E  *  K  T  M  E  E  E  L  T  D  L  L  L  E  A  A  G  R  T  N  T  G  G  R  N  R  P  P  H  S  S  K  R  H  H  K  S  S  Y  S  D  D  G  S  D  S  R  D  D  D  S  D  D  G  R  G  Y  S  G  R  K  L  S  G  S  Q  V  P  L  K  K  R  L  D  P  Q  E  R  D  D  D  H  S  S  H  G  E  G  N  D  G  D  G  Y  G  N  E  S  D  D  D  S  I  G  S  D  L  Y  K  D  D  D  D  R  Q  K  L  A  Q  M  T  E  L  E  R  E  M  I  L  T  D  R  A  A  K  K  S  D  R  S  L  H  D  K  M  I  K  D  R  A  Q  P  R  K  Q  S  S  P  P  S  H  S  R  G  M  R  S  S  T  R  A  L  D  R  A  A  D  R  D  D  A  L  N  E  I  R  A  K  R  A  R  Q  Q  Q  D  P  E  G  Q  F  K  L  R  D  A  A  R  K  G  S  G  S  R  G  Y  S  P  I  K  R  R  S  F  T  A  A  S  L  G  S  S  P  T  R  G  E  S  D  S  H  S  N  E  G  D  S  S  A  D  D  G  M  D  D  S  D  D  D  K  S  S  P  E  S  Q  L  P  T  F  E  D  I  K  E  I  S  I  R  R  S  K  L  A  K  W  F  M  E  P  F  F  D  E  L  I  V  G  C  F  V  R  V  G  I  G  R  S  R  S  G  P  I  Y  R  L  C  V  V  R  N  V  D  A  S  D  P  N  R  Q  Y  K  L  E  N  K  T  T  S  K  F  L  N  V  V  W  G  N  E  N  S  A  A  R  W  Q  M  A  M  I  S  D  S  P  P  L  R  D  E  F  D  Q  W  V  R  E  V  E  R  S  G  G  R  M  P  S  K  Q  D  V  L  E  K  K  E  A  I  Q  K  S  N  T  F  V  Y  S  A  D  T  V  K  Q  M  L  Q  Q  K  K  S  A  T  W  R  P  L  N  V  A  A  E  K  D  R  L  R  R  D  M  E  V  A  K  M  K  N  D  E  A  E  V  E  R  I  K  A  R  L  Q  E  L  E  D  S  R  K  V  Q  E  K  D  D  K  A  R  R  L  A  E  M  N  R  K  N  R  V  E  N  F  K  N  A  S  E  L  R  P  V  N  Q  L  L  K  A  G  E  A  G  Y  D  P  F  S  R  R  W  T  R  S  T  N  Y  F  A  K  G  A  S  N  G  E  A  A  A  A  A  A  L  A  A  E  D  N  N  G  A  G  G  T  A  D  G  G  M  A  A  T  A  A  A  L  Q  A  A  A  G  A  G  K  L  V  D  T  N  A  P  V  D  Q  G  T  E  S  N  T  L  H  D  F  D  L  P  I  S  L  A  V  L  Q  K  F  G  G  S  Q  G  G  Q  A  G  F  M  A  R  K  Q  R  I  E  A  T  V  G  C  S  V  P  E  N  D  G  R  R  H  A  L  T  L  S  V  S  D  Y  K  R  R  R  G  L  L  *  D  L  L  L  L  L  F  S  Q  M  N  C  C  Y  W  G  F  M  Y  *  L  *  I  K  S  T  V  T  A  I  L  K  Y  V  E  T  F  L  E  F  M  L  L  *  Q  R  P  G  *  P  G  V  F  *  A  L  M  R  K  A  L  L  I  I  N  N  I  S  S  </first_frame>
            <second_frame>  F  F  F  F  H  F  S  P  A  N  S  L  S  A  R  S  I  :  Q  V  A  E  W  N  R  R  P  W  K  K  S  *  L  I  Y  C  W  R  L  L  V  E  Q  I  L  V  E  G  I  V  H  L  I  H  L  K  D  I  T  R  V  H  I  L  M  M  E  V  I  P  G  M  M  T  L  M  M  V  V  G  I  Q  V  E  S  F  L  V  H  K  F  L  S  R  R  D  W  T  L  K  K  E  M  M  I  I  A  A  M  E  K  A  M  M  E  M  V  M  A  M  R  V  M  M  I  L  L  A  V  I  F  T  R  T  M  M  T  G  K  S  L  L  R  *  L  N  W  K  G  K  *  Y  *  L  I  V  Q  R  R  N  L  T  G  V  C  M  T  K  *  S  R  I  G  P  N  Q  G  N  K  A  H  L  L  H  I  L  V  A  C  A  H  Q  Q  E  L  W  I  G  Q  L  T  E  M  M  H  *  M  R  Y  E  Q  N  E  Q  D  S  S  R  I  P  R  V  N  S  S  *  G  M  Q  L  E  K  V  L  E  A  G  A  I  H  L  S  N  V  E  V  L  Q  L  H  L  *  V  A  V  L  P  G  E  K  V  I  H  I  V  M  R  E  I  H  Q  L  M  M  E  W  M  T  V  M  M  T  S  H  H  R  S  H  S  C  Q  H  L  R  I  *  K  K  S  L  F  V  V  Q  N  W  Q  N  G  L  W  S  P  S  L  M  S  *  L  W  V  A  L  *  E  L  A  L  G  G  Q  G  L  V  L  S  I  G  S  V  W  S  A  M  L  M  L  Q  I  L  I  D  N  T  S  *  K  I  K  P  H  P  N  F  *  M  L  F  G  A  M  K  T  L  L  L  G  G  R  W  L  *  F  Q  T  L  L  L  *  G  M  S  L  I  S  G  *  G  K  *  N  E  V  V  V  V  C  L  V  S  K  M  C  W  K  K  K  R  P  Y  R  N  L  T  H  L  F  T  L  L  T  L  *  S  R  C  C  S  R  K  N  L  Q  H  G  G  H  L  M  L  L  L  R  R  I  V  *  E  G  I  W  K  W  P  K  *  R  M  T  K  Q  K  W  R  G  L  R  Q  D  C  R  N  W  R  I  A  G  R  F  K  R  K  M  T  R  P  A  G  W  L  R  *  T  G  R  I  G  S  R  I  S  K  M  H  Q  N  S  D  Q  *  I  N  C  *  K  L  V  R  L  G  M  I  P  S  L  E  G  G  L  G  L  Q  I  I  L  Q  K  V  H  P  M  V  K  L  L  Q  Q  Q  H  W  Q  L  K  I  T  M  G  L  V  E  L  L  T  E  E  W  Q  L  Q  Q  Q  P  C  R  L  Q  Q  A  L  G  S  W  W  T  Q  M  L  L  *  I  K  E  Q  N  Q  I  R  Y  M  I  S  I  C  L  S  R  W  L  C  F  R  S  L  E  G  L  K  E  A  K  Q  D  L  W  L  A  N  R  G  *  K  Q  L  L  D  V  A  F  R  R  T  M  A  E  D  M  H  *  L  *  V  L  V  T  T  R  E  G  E  D  S  F  E  I  Y  C  F  C  C  L  A  K  *  I  V  V  T  G  D  S  C  T  S  C  E  L  R  V  Q  L  L  L  Y  *  N  M  L  R  L  F  L  N  L  C  F  Y  S  K  D  L  V  N  Q  G  S  F  K  L  *  *  E  K  H  S  L  L  L  T  I  F  R  V </second_frame>
            <third_frame>   F  F  F  F  I  S  L  R  R  T  P  Y  R  R  D  Q  F :   K  W  L  S  G  I  E  D  H  G  R  R  V  N  *  F  T  V  G  G  C  W  *  N  K  Y  W  W  K  E  S  S  T  S  F  I  *  K  T  S  Q  E  F  I  F  *  *  W  K  *  F  Q  G  *  *  L  *  *  W  S  W  V  F  R  S  K  A  F  W  F  T  S  S  S  Q  E  E  I  G  P  S  R  K  R  *  *  S  *  Q  P  W  R  R  Q  *  W  R  W  L  W  Q  *  E  *  *  *  F  Y  W  Q  *  S  L  Q  G  R  *  *  P  A  K  A  C  S  D  D  *  T  G  K  G  N  D  I  D  *  S  C  S  E  E  I  *  Q  E  S  A  *  Q  N  D  Q  G  S  G  P  T  K  E  T  K  L  T  S  F  T  F  S  W  H  A  L  I  N  K  S  F  G  *  G  S  *  Q  R  *  C  I  E  *  D  T  S  K  T  S  K  T  A  A  G  S  R  G  S  I  Q  A  E  G  C  S  *  K  R  F  W  K  Q  G  L  F  T  Y  Q  T  *  K  F  Y  S  C  I  S  R  *  Q  S  Y  Q  G  R  K  *  F  T  *  *  *  G  R  F  I  S  *  *  W  N  G  *  Q  *  *  *  Q  V  I  T  G  V  T  V  A  N  I  *  G  Y  K  R  N  L  Y  S  S  F  K  T  G  K  M  V  Y  G  A  L  L  *  *  V  N  C  G  L  L  C  K  S  W  H  W  E  V  K  V  W  S  Y  L  *  A  L  C  G  P  Q  C  *  C  F  R  S  *  S  T  I  Q  A  R  K  *  N  H  I  Q  I  S  K  C  C  L  G  Q  *  K  L  C  C  *  V  A  D  G  Y  D  F  R  L  S  S  S  E  G  *  V  *  S  V  G  K  G  S  R  T  K  W  W  S  Y  A  *  *  A  R  C  V  G  K  K  R  G  H  T  E  I  *  H  I  C  L  L  C  *  H  C  K  A  D  V  A  A  E  K  I  C  N  M  E  A  T  *  C  C  C  *  E  G  S  F  E  K  G  Y  G  S  G  Q  N  E  E  *  R  S  R  S  G  E  D  *  G  K  T  A  G  T  G  G  *  Q  E  G  S  R  E  R  *  Q  G  P  Q  A  G  *  D  E  P  E  E  *  G  R  E  F  Q  K  C  I  R  T  Q  T  S  E  S  T  V  E  S  W  *  G  W  V  *  S  L  L  *  K  V  D  *  V  Y  K  L  F  C  K  R  C  I  Q  W  *  S  C  C  S  S  S  I  G  S  *  R  *  Q  W  G  W  W  N  C  *  R  R  N  G  S  Y  S  S  S  L  A  G  C  S  R  R  W  E  V  G  G  H  K  C  S  C  R  S  R  N  R  I  K  Y  A  T  *  F  R  S  A  Y  L  V  G  C  A  S  E  V  W  R  V  S  R  R  P  S  R  I  Y  G  S  Q  T  E  D  R  S  N  C  W  M  *  R  S  G  E  R  W  Q  K  T  C  T  N  F  K  C  *  *  L  Q  E  K  E  R  T  P  L  R  F  T  A  F  V  V  *  P  N  E  L  L  L  L  G  I  H  V  L  A  V  N  *  E  Y  S  Y  C  Y  I  K  I  C  *  D  F  S  *  I  Y  A  S  I  A  K  T  W  L  T  R  G  L  L  S  F  N  E  K  S  T  P  Y  Y  *  Q  Y  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55503" stop="57446"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1941</number_coding_nucleotides>
                  <number_encoded_amino_acids>647</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTMEEELTDLLLEAAGRTNTGGRNRPPHSSKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQVPLKKRLDPQERDDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQKLAQMTELEREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGSRGYSPIKRRSFTAASLGSSPTRGESDSHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGPIYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAARWQMAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDDKARRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKGASNGEAAAAAALAAEDNNGAGGTADGGMAATAAALQAAAGAGKLVDTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDYKRRRGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="62188" PGL_stop="62670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62188" e_stop="62670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62188" e_stop="62670" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62188" stop="62670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62200" stop="62653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAGGGCTCAAAACCCAAGAACATTTTTGGCTACTGAAAATTTCCAAAAAGTACTAAAAAAAGACATCTTTTTTCAATTTTACTGCACTTTTTTGCCGCCTCCATCACTGAAAAAATGTTGTTCAACTTCCTCTACTATCATCTTCATCACTTTCTCATAGCTGAAAATTGCTTCAGAAAATGAAAAAGGAGACATTTTTAAATTTCCAAGAAAAGACCATGGATGGTGTCATTAAGAGGAGGTCTTTATATGCAATTGGTTCTTGTTTTCTGCTTTTTCTCTTAGCTTACAACAGTTCCACTGTGTTCTATGTTCAAGTCCCTGTTCCAGGGAACTCTTCGCCGGAGATTTCAAGTTTTTTAACTGAAAATGTCGCCAGAAAATCAAGAAAGTTGGTTTCTTTATCTACTTCAGCTAAACGTTCATCCTCTGCGATATATGCTGTAAAAGAAGAAACCCCACTTGTAAAGCCGAACACC</gDNA_template>
            <first_frame> K  T  G  L  K  T  Q  E  H  F  W  L  L  K  I  S  K  K  Y  *  K  K  T  S  F  F  N  F  T  A  L  F  C  R  L  H  H  *  K  N  V  V  Q  L  P  L  L  S  S  S  S  L  S  H  S  *  K  L  L  Q  K  M  K  K  E  T  F  L  N  F  Q  E  K  T  M  D  G  V  I  K  R  R  S  L  Y  A  I  G  S  C  F  L  L  F  L  L  A  Y  N  S  S  T  V  F  Y  V  Q  V  P  V  P  G  N  S  S  P  E  I  S  S  F  L  T  E  N  V  A  R  K  S  R  K  L  V  S  L  S  T  S  A  K  R  S  S  S  A  I  Y  A  V  K  E  E  T  P  L  V  K  P  N  T </first_frame>
            <second_frame>  K  Q  G  S  K  P  K  N  I  F  G  Y  *  K  F  P  K  S  T  K  K  R  H  L  F  S  I  L  L  H  F  F  A  A  S  I  T  E  K  M  L  F  N  F  L  Y  Y  H  L  H  H  F  L  I  A  E  N  C  F  R  K  *  K  R  R  H  F  *  I  S  K  K  R  P  W  M  V  S  L  R  G  G  L  Y  M  Q  L  V  L  V  F  C  F  F  S  *  L  T  T  V  P  L  C  S  M  F  K  S  L  F  Q  G  T  L  R  R  R  F  Q  V  F  *  L  K  M  S  P  E  N  Q  E  S  W  F  L  Y  L  L  Q  L  N  V  H  P  L  R  Y  M  L  *  K  K  K  P  H  L  *  S  R  T   </second_frame>
            <third_frame>   N  R  A  Q  N  P  R  T  F  L  A  T  E  N  F  Q  K  V  L  K  K  D  I  F  F  Q  F  Y  C  T  F  L  P  P  P  S  L  K  K  C  C  S  T  S  S  T  I  I  F  I  T  F  S  *  L  K  I  A  S  E  N  E  K  G  D  I  F  K  F  P  R  K  D  H  G  W  C  H  *  E  E  V  F  I  C  N  W  F  L  F  S  A  F  S  L  S  L  Q  Q  F  H  C  V  L  C  S  S  P  C  S  R  E  L  F  A  G  D  F  K  F  F  N  *  K  C  R  Q  K  I  K  K  V  G  F  F  I  Y  F  S  *  T  F  I  L  C  D  I  C  C  K  R  R  N  P  T  C  K  A  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62356" stop="62670"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLQKMKKETFLNFQEKTMDGVIKRRSLYAIGSCFLLFLLAYNSSTVFYVQVPVPGNSSPEISSFLTENVARKSRKLVSLSTSAKRSSSAIYAVKEETPLVKPNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="63413" PGL_stop="64385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63413" e_stop="63949"/>
            <exon e_start="64372" e_stop="64385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="0.994"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="63413" e_stop="63949" e_length="537"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63950" i_stop="64371" i_length="422"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="64372" e_stop="64385" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63413" stop="63736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63424" stop="63905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63585" stop="63949"/>
              <exon start="64372" stop="64385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGTCAAGGGTAAGTGGAAGAGATGGATACAATTTCACTGTTTTGCCCCCAATGGCTTTTTATCCAGTTGATTGGAATAGGATTGGTAGTCTATTTCTTGGGCCGAGGAACGAGACTCAGTCGAAATGGTTGCTCTTGAAACTCCAGCAAATTCAGAGTGGAAGTTTGGCAGTGCATCTTTGGAACAAGCAAAGTAGAGAACTTGAGGTTGAAGAAGGAAGCATAATTCAACATATAATGTCAGATTGTTGTGTTTTCTGCAATTCTTACTCATCAAAGTTGTAAGTATACACCACGTAAAATCAGCGTCAGCGTGTTTTATTCTTCATTAATTGTTGTAGGATAATGGACCACCTAAGCTCATTACATAGGTTGTCTTGAAGAAATTAGGTGGTACAGAAATAATGCAGGATCCATGTATTCTACTTCATTGTCGATGTGATTGAACAAATTATACAAAGATAGAAAAGCAGAATTATTGCTAAGTTCCCATTGACTGAAATGCTATTGGCCCCATGATTTGATTGGATAAATA : AAAAGTCATGGAGA</gDNA_template>
            <first_frame> L  C  Q  G  *  V  E  E  M  D  T  I  S  L  F  C  P  Q  W  L  F  I  Q  L  I  G  I  G  L  V  V  Y  F  L  G  R  G  T  R  L  S  R  N  G  C  S  *  N  S  S  K  F  R  V  E  V  W  Q  C  I  F  G  T  S  K  V  E  N  L  R  L  K  K  E  A  *  F  N  I  *  C  Q  I  V  V  F  S  A  I  L  T  H  Q  S  C  K  Y  T  P  R  K  I  S  V  S  V  F  Y  S  S  L  I  V  V  G  *  W  T  T  *  A  H  Y  I  G  C  L  E  E  I  R  W  Y  R  N  N  A  G  S  M  Y  S  T  S  L  S  M  *  L  N  K  L  Y  K  D  R  K  A  E  L  L  L  S  S  H  *  L  K  C  Y  W  P  H  D  L  I  G  *  I  :  K  S  H  G   </first_frame>
            <second_frame>  C  V  K  G  K  W  K  R  W  I  Q  F  H  C  F  A  P  N  G  F  L  S  S  *  L  E  *  D  W  *  S  I  S  W  A  E  E  R  D  S  V  E  M  V  A  L  E  T  P  A  N  S  E  W  K  F  G  S  A  S  L  E  Q  A  K  *  R  T  *  G  *  R  R  K  H  N  S  T  Y  N  V  R  L  L  C  F  L  Q  F  L  L  I  K  V  V  S  I  H  H  V  K  S  A  S  A  C  F  I  L  H  *  L  L  *  D  N  G  P  P  K  L  I  T  *  V  V  L  K  K  L  G  G  T  E  I  M  Q  D  P  C  I  L  L  H  C  R  C  D  *  T  N  Y  T  K  I  E  K  Q  N  Y  C  *  V  P  I  D  *  N  A  I  G  P  M  I  *  L  D  K  * :   K  V  M  E  </second_frame>
            <third_frame>   V  S  R  V  S  G  R  D  G  Y  N  F  T  V  L  P  P  M  A  F  Y  P  V  D  W  N  R  I  G  S  L  F  L  G  P  R  N  E  T  Q  S  K  W  L  L  L  K  L  Q  Q  I  Q  S  G  S  L  A  V  H  L  W  N  K  Q  S  R  E  L  E  V  E  E  G  S  I  I  Q  H  I  M  S  D  C  C  V  F  C  N  S  Y  S  S  K  L  *  V  Y  T  T  *  N  Q  R  Q  R  V  L  F  F  I  N  C  C  R  I  M  D  H  L  S  S  L  H  R  L  S  *  R  N  *  V  V  Q  K  *  C  R  I  H  V  F  Y  F  I  V  D  V  I  E  Q  I  I  Q  R  *  K  S  R  I  I  A  K  F  P  L  T  E  M  L  L  A  P  *  F  D  W  I  N   : K  K  S  W  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63415" stop="63699"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSRVSGRDGYNFTVLPPMAFYPVDWNRIGSLFLGPRNETQSKWLLLKLQQIQSGSLAVHLWNKQSRELEVEEGSIIQHIMSDCCVFCNSYSSKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="69600" PGL_stop="82241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69600" e_stop="69961"/>
            <exon e_start="73299" e_stop="73418"/>
            <exon e_start="73512" e_stop="73637"/>
            <exon e_start="73737" e_stop="73799"/>
            <exon e_start="74577" e_stop="74684"/>
            <exon e_start="75280" e_stop="75357"/>
            <exon e_start="76046" e_stop="76138"/>
            <exon e_start="76250" e_stop="76336"/>
            <exon e_start="76882" e_stop="76983"/>
            <exon e_start="77108" e_stop="77227"/>
            <exon e_start="77340" e_stop="77402"/>
            <exon e_start="78075" e_stop="78208"/>
            <exon e_start="78365" e_stop="78446"/>
            <exon e_start="78535" e_stop="78593"/>
            <exon e_start="78698" e_stop="78743"/>
            <exon e_start="79129" e_stop="79220"/>
            <exon e_start="79309" e_stop="79378"/>
            <exon e_start="79494" e_stop="79845"/>
            <exon e_start="80389" e_stop="80476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.511"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69600" e_stop="69961" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69962" i_stop="73298" i_length="3337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73299" e_stop="73418" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="73419" i_stop="73511" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73512" e_stop="73637" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.971">
            <gDNA_intron_boundary i_start="73638" i_stop="73736" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73737" e_stop="73799" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73800" i_stop="74576" i_length="777"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74577" e_stop="74684" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74685" i_stop="75279" i_length="595"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75280" e_stop="75357" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75358" i_stop="76045" i_length="688"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76046" e_stop="76138" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="0.974">
            <gDNA_intron_boundary i_start="76139" i_stop="76249" i_length="111"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76250" e_stop="76336" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76337" i_stop="76881" i_length="545"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="76882" e_stop="76983" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="76984" i_stop="77107" i_length="124"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="77108" e_stop="77227" e_length="120"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="77228" i_stop="77339" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="77340" e_stop="77402" e_length="63"/>
          </exon>
          <intron i_serial="11" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77403" i_stop="78074" i_length="672"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="78075" e_stop="78208" e_length="134"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78209" i_stop="78364" i_length="156"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="78365" e_stop="78446" e_length="82"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78447" i_stop="78534" i_length="88"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="78535" e_stop="78593" e_length="59"/>
          </exon>
          <intron i_serial="14" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78594" i_stop="78697" i_length="104"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="78698" e_stop="78743" e_length="46"/>
          </exon>
          <intron i_serial="15" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="78744" i_stop="79128" i_length="385"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="79129" e_stop="79220" e_length="92"/>
          </exon>
          <intron i_serial="16" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="79309" e_stop="79378" e_length="70"/>
          </exon>
          <intron i_serial="17" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79379" i_stop="79493" i_length="115"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="79494" e_stop="79845" e_length="352"/>
          </exon>
          <intron i_serial="18" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79846" i_stop="80388" i_length="543"/>
          </intron>
          <exon e_serial="19" e_score="0.511">
            <gDNA_exon_boundary e_start="80389" e_stop="80476" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69600" stop="69961"/>
              <exon start="73299" stop="73418"/>
              <exon start="73512" stop="73637"/>
              <exon start="73737" stop="73799"/>
              <exon start="74577" stop="74684"/>
              <exon start="75280" stop="75332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69617" stop="69961"/>
              <exon start="73299" stop="73418"/>
              <exon start="73512" stop="73637"/>
              <exon start="73737" stop="73799"/>
              <exon start="74577" stop="74684"/>
              <exon start="75280" stop="75331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69624" stop="69869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73614" stop="73637"/>
              <exon start="73737" stop="73799"/>
              <exon start="74577" stop="74684"/>
              <exon start="75280" stop="75357"/>
              <exon start="76046" stop="76138"/>
              <exon start="76250" stop="76336"/>
              <exon start="76882" stop="76947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74577" stop="74684"/>
              <exon start="75280" stop="75357"/>
              <exon start="76046" stop="76138"/>
              <exon start="76250" stop="76336"/>
              <exon start="76882" stop="76983"/>
              <exon start="77108" stop="77227"/>
              <exon start="77340" stop="77402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76910" stop="76983"/>
              <exon start="77108" stop="77227"/>
              <exon start="77340" stop="77402"/>
              <exon start="78075" stop="78208"/>
              <exon start="78365" stop="78446"/>
              <exon start="78535" stop="78593"/>
              <exon start="78698" stop="78743"/>
              <exon start="79129" stop="79220"/>
              <exon start="79309" stop="79377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78075" stop="78208"/>
              <exon start="78365" stop="78446"/>
              <exon start="78535" stop="78593"/>
              <exon start="78698" stop="78743"/>
              <exon start="79129" stop="79220"/>
              <exon start="79309" stop="79359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79129" stop="79220"/>
              <exon start="79309" stop="79378"/>
              <exon start="79494" stop="79845"/>
              <exon start="80389" stop="80476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTCATCTTTCGACTCCCTCCATTTTTCTTTCTCTTCACCTTCTCCTATAACTCCACCGGAAAAAAAATATCTCAACTGAATATCTACATTAATCTCAAACGGCCGGAGTAGTATGCCGGTTGAAGTAGCAAACGTAGTGACAGAAGCCATTGGTAATCCAAAAGGCGATTTGAGACCTCAAAACCCTAACGCCGCCTCTAAGAAGTCGAAGGAAAGCGACCGACGCCGTAGGCGGAGGAAGCAGAAGAAGAACAAGGCGGCGTCTAAGGTTGCAAATGGAGAAGACAGTGATAACGCTGCGCAAGACGCGAACGGCGGCGCTGAGGATAGTTCCAAGGAAAATTCCGATCCTCAGAAG : TCTTTGGTTCAAGTTGAAGTAGAATATGTACCAGAGAAGGCCGAATTAGATGGTGAGTTCGATGAGGAATTCAGGAAGGTTTTTGAGAAATTCACTTTCACGGATGCTACTGGTTCTGAG : GAGAATGATAAAAAGGATGAAACTGCTGCTGATGGAGCCTCAAAGAAAAAGGCGGATTCTGATTCTGAGGAGGAAGAAGAGGATGCACAGCAAAAGGAGAAGGGAGTCTCGAACAAAAAGAAAAAA : CTTCAGCGTAGGATGAAAATTGCAGAACTGAAACAAATCTCTATGAAGCCTGATGTTGTTGAG : GTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAG : GGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTGCGACAGGAATTGAGAAAATTAGACAA : GCTTATATTGAAAAGGAGGACAGTAAGAAGCTTAAACAAAAGCAGCGGGAAAGGATGCAGCCAAAAATGGGGAAGATGGATATCGATTATCAG : GTTCTACATGACGCCTTTTTTAAGTATCAAACTAAACCAAAGTTGACATCCCTTGGTGATCTGTATTATGAAGGAAAAGAGTTTGAG : GTCAAGTTGAGGGAAATGAAACCTGGAACTTTGTCTCATGAACTGAAAGAGGCCCTTGGTATGCCTGAAGGTGCTCCTCCTCCATGGCTCATCAATATGCAG : AGATATGGTCCTCCACCCTCTTATCCTCAGCTGAAGATTCCTGGACTGAATGCTCCTATTCCACATGGAGCCAAGTTCGGTTATCAGCCGGGAGGTTGGGGTAAACCACCTGTTGATGAA : TATGGGCGCCCTTTATACGGAGATGTCTTTGGTGTATTGCAACAAGATCAGCCTAATTATGAG : GATGAACCTGTTGATAAGACTAAACATTGGGGTGACTTGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGTTGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCAAG : TACTCCTACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTATCAG : GTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATAC : GTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCAAAAGG : GTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA : ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAG : AATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTA : TAAAACATTAATACAATAAACAGAATTAAAAAAAAAGGATCGAACATAGAATAAGCAGTGATGGAGACATCTTTTGTTCAAAACACGT</gDNA_template>
            <first_frame> L  L  H  L  S  T  P  S  I  F  L  S  L  H  L  L  L  *  L  H  R  K  K  N  I  S  T  E  Y  L  H  *  S  Q  T  A  G  V  V  C  R  L  K  *  Q  T  *  *  Q  K  P  L  V  I  Q  K  A  I  *  D  L  K  T  L  T  P  P  L  R  S  R  R  K  A  T  D  A  V  G  G  G  S  R  R  R  T  R  R  R  L  R  L  Q  M  E  K  T  V  I  T  L  R  K  T  R  T  A  A  L  R  I  V  P  R  K  I  P  I  L  R  S :   L  W  F  K  L  K  *  N  M  Y  Q  R  R  P  N  *  M  V  S  S  M  R  N  S  G  R  F  L  R  N  S  L  S  R  M  L  L  V  L  R :   R  M  I  K  R  M  K  L  L  L  M  E  P  Q  R  K  R  R  I  L  I  L  R  R  K  K  R  M  H  S  K  R  R  R  E  S  R  T  K  R  K  N :   F  S  V  G  *  K  L  Q  N  *  N  K  S  L  *  S  L  M  L  L  R :   Y  G  M  P  L  Q  Q  T  L  S  S  W  Y  F  *  N  L  T  G  I  L  F  L  F  Q  D  T  G  V  R  N  G  N  F  C  R :   G  S  V  G  L  R  N  S  H  F  N  F  L  T  L  *  L  R  Q  E  L  R  K  L  D  K :   L  I  L  K  R  R  T  V  R  S  L  N  K  S  S  G  K  G  C  S  Q  K  W  G  R  W  I  S  I  I  R :   F  Y  M  T  P  F  L  S  I  K  L  N  Q  S  *  H  P  L  V  I  C  I  M  K  E  K  S  L  R :   S  S  *  G  K  *  N  L  E  L  C  L  M  N  *  K  R  P  L  V  C  L  K  V  L  L  L  H  G  S  S  I  C  R :   D  M  V  L  H  P  L  I  L  S  *  R  F  L  D  *  M  L  L  F  H  M  E  P  S  S  V  I  S  R  E  V  G  V  N  H  L  L  M  N :   M  G  A  L  Y  T  E  M  S  L  V  Y  C  N  K  I  S  L  I  M  R :   M  N  L  L  I  R  L  N  I  G  V  T  W  R  K  R  K  K  R  R  K  R  R  K  K  K  S  W  R  K  R  R  W  R  T  V  F  S  Q  W  T  V  F  Q   : V  L  L  L  E  L  R  L  L  M  L  L  T  F  A  S  S  R  G  R  S  P  R  S  P  S  I  R :   C  L  K  K  K  K  K  R  *  L  L  V  L  F  L  E  Q  A  I   : R  M  *  S  T  L  A  L  K  T  R  L  V  P  K  G :   L  I  C  S  K  V  R  S  R  I  E  L  M  S  H  W  H  L  K  S  W  N  L  W  T  M  F  Y  Q  P   : N  T  R  K  L  E  R  K  R  S  S  V  A  S  V  R  I  S  V  T  W  *  Q  R :   M  R  R  R  G  S  V  K  C  R  R  R  M  A  S  R  R  R  R  I  S  S  F  E  V  L  I  Y  C  S  I  *  F  R  A  A  V  H  P  A  *  G  N  S  I  S  R  S  P  Y  A  L  R  *  I  S  Y  A  V  M  R  V  F  S  H  A  L  K  R  G  E  L  V  Y  D  N  L  S  Y  E  M  C  L  V  C  T  S  C  F  I  S  T  Y  V  E  L  Y  V  K  I  E  N  L  L  P  *  F  R  C  M  L  D  L  V  I  I  L  :  *  N  I  N  T  I  N  R  I  K  K  K  G  S  N  I  E  *  A  V  M  E  T  S  F  V  Q  N  T  </first_frame>
            <second_frame>  F  F  I  F  R  L  P  P  F  F  F  L  F  T  F  S  Y  N  S  T  G  K  K  I  S  Q  L  N  I  Y  I  N  L  K  R  P  E  *  Y  A  G  *  S  S  K  R  S  D  R  S  H  W  *  S  K  R  R  F  E  T  S  K  P  *  R  R  L  *  E  V  E  G  K  R  P  T  P  *  A  E  E  A  E  E  E  Q  G  G  V  *  G  C  K  W  R  R  Q  *  *  R  C  A  R  R  E  R  R  R  *  G  *  F  Q  G  K  F  R  S  S  E   : V  F  G  S  S  *  S  R  I  C  T  R  E  G  R  I  R  W  *  V  R  *  G  I  Q  E  G  F  *  E  I  H  F  H  G  C  Y  W  F  *   : G  E  *  *  K  G  *  N  C  C  *  W  S  L  K  E  K  G  G  F  *  F  *  G  G  R  R  G  C  T  A  K  G  E  G  S  L  E  Q  K  E  K   : T  S  A  *  D  E  N  C  R  T  E  T  N  L  Y  E  A  *  C  C  *   : G  M  G  C  H  C  S  R  P  *  A  P  G  I  S  E  I  L  P  E  Y  C  S  C  S  K  T  L  V  S  E  T  E  I  F  A   : G  E  A  W  D  *  E  T  A  I  S  T  S  *  L  Y  S  C  D  R  N  *  E  N  *  T   : S  L  Y  *  K  G  G  Q  *  E  A  *  T  K  A  A  G  K  D  A  A  K  N  G  E  D  G  Y  R  L  S   : G  S  T  *  R  L  F  *  V  S  N  *  T  K  V  D  I  P  W  *  S  V  L  *  R  K  R  V  *   : G  Q  V  E  G  N  E  T  W  N  F  V  S  *  T  E  R  G  P  W  Y  A  *  R  C  S  S  S  M  A  H  Q  Y  A   : E  I  W  S  S  T  L  L  S  S  A  E  D  S  W  T  E  C  S  Y  S  T  W  S  Q  V  R  L  S  A  G  R  L  G  *  T  T  C  *  *   : I  W  A  P  F  I  R  R  C  L  W  C  I  A  T  R  S  A  *  L  *   : G  *  T  C  *  *  D  *  T  L  G  *  L  G  G  R  G  R  R  G  G  R  G  G  R  R  R  V  G  G  R  G  D  G  G  R  Y  S  V  S  G  Q  S  F  K  :  Y  S  Y  W  S  *  D  S  *  C  Y  *  P  S  Q  A  A  E  E  G  A  R  E  A  P  L  S   : G  A  *  R  K  R  R  K  G  S  S  W  Y  S  S  W  N  K  P  Y  :  V  C  D  Q  H  W  R  S  R  Q  G  W  C  Q  K   : G  *  S  A  Q  R  S  E  V  G  *  S  *  C  H  I  G  T  *  R  V  G  T  Y  G  Q  C  F  T  S  Q  :  I  R  G  S  *  R  G  R  E  A  P  *  P  A  *  G  F  Q  *  H  G  S  R   : E  *  E  E  E  E  A  *  N  A  G  E  G  W  Q  V  E  E  E  G  F  Q  V  L  R  F  *  Y  I  V  P  S  S  L  G  L  Q  Y  I  Q  L  R  V  I  A  L  V  G  L  H  M  H  C  D  K  S  R  M  L  *  *  E  C  F  P  M  R  *  S  G  E  S  W  C  M  I  I  Y  P  M  K  C  A  *  F  V  P  L  V  S  F  L  H  T  L  S  C  M  *  K  *  K  I  S  C  P  N  L  D  V  C  S  T  W  L  *  F  Y :   K  T  L  I  Q  *  T  E  L  K  K  K  D  R  T  *  N  K  Q  *  W  R  H  L  L  F  K  T  R </second_frame>
            <third_frame>   S  S  S  F  D  S  L  H  F  S  F  S  S  P  S  P  I  T  P  P  E  K  K  Y  L  N  *  I  S  T  L  I  S  N  G  R  S  S  M  P  V  E  V  A  N  V  V  T  E  A  I  G  N  P  K  G  D  L  R  P  Q  N  P  N  A  A  S  K  K  S  K  E  S  D  R  R  R  R  R  R  K  Q  K  K  N  K  A  A  S  K  V  A  N  G  E  D  S  D  N  A  A  Q  D  A  N  G  G  A  E  D  S  S  K  E  N  S  D  P  Q  K  :  S  L  V  Q  V  E  V  E  Y  V  P  E  K  A  E  L  D  G  E  F  D  E  E  F  R  K  V  F  E  K  F  T  F  T  D  A  T  G  S  E  :  E  N  D  K  K  D  E  T  A  A  D  G  A  S  K  K  K  A  D  S  D  S  E  E  E  E  E  D  A  Q  Q  K  E  K  G  V  S  N  K  K  K  K  :  L  Q  R  R  M  K  I  A  E  L  K  Q  I  S  M  K  P  D  V  V  E  :  V  W  D  A  T  A  A  D  P  K  L  L  V  F  L  K  S  Y  R  N  T  V  P  V  P  R  H  W  C  Q  K  R  K  F  L  Q  :  G  K  R  G  I  E  K  Q  P  F  Q  L  P  D  F  I  A  A  T  G  I  E  K  I  R  Q  :  A  Y  I  E  K  E  D  S  K  K  L  K  Q  K  Q  R  E  R  M  Q  P  K  M  G  K  M  D  I  D  Y  Q  :  V  L  H  D  A  F  F  K  Y  Q  T  K  P  K  L  T  S  L  G  D  L  Y  Y  E  G  K  E  F  E  :  V  K  L  R  E  M  K  P  G  T  L  S  H  E  L  K  E  A  L  G  M  P  E  G  A  P  P  P  W  L  I  N  M  Q  :  R  Y  G  P  P  P  S  Y  P  Q  L  K  I  P  G  L  N  A  P  I  P  H  G  A  K  F  G  Y  Q  P  G  G  W  G  K  P  P  V  D  E  :  Y  G  R  P  L  Y  G  D  V  F  G  V  L  Q  Q  D  Q  P  N  Y  E  :  D  E  P  V  D  K  T  K  H  W  G  D  L  E  E  E  E  E  E  E  E  E  E  E  E  E  E  L  E  E  E  E  M  E  D  G  I  Q  S  V  D  S  L  S  S :   T  P  T  G  V  E  T  P  D  V  I  D  L  R  K  Q  Q  R  K  E  P  E  K  P  L  Y  Q  :  V  L  E  E  K  E  E  K  V  A  P  G  T  L  L  G  T  S  H  T :   Y  V  I  N  T  G  A  Q  D  K  A  G  A  K  R  :  V  D  L  L  K  G  Q  K  S  D  R  V  D  V  T  L  A  P  E  E  L  E  L  M  D  N  V  L  P  A  K :   Y  E  E  A  R  E  E  E  K  L  R  S  Q  R  E  D  F  S  D  M  V  A  E  :  N  E  K  K  R  K  R  K  M  Q  E  K  D  G  K  S  K  K  K  D  F  K  F  *  G  S  D  I  L  F  H  L  V  *  G  C  S  T  S  S  L  G  *  *  H  *  *  V  S  I  C  T  A  I  N  L  V  C  C  D  E  S  V  F  P  C  V  E  A  G  R  V  G  V  *  *  S  I  L  *  N  V  L  S  L  Y  L  L  F  H  F  Y  I  R  *  A  V  C  E  N  R  K  S  L  A  L  I  *  M  Y  A  R  L  G  Y  N  F   : I  K  H  *  Y  N  K  Q  N  *  K  K  R  I  E  H  R  I  S  S  D  G  D  I  F  C  S  K  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69683" stop="69961"/>
                    <exon start="73299" stop="73418"/>
                    <exon start="73512" stop="73637"/>
                    <exon start="73737" stop="73799"/>
                    <exon start="74577" stop="74684"/>
                    <exon start="75280" stop="75357"/>
                    <exon start="76046" stop="76138"/>
                    <exon start="76250" stop="76336"/>
                    <exon start="76882" stop="76983"/>
                    <exon start="77108" stop="77227"/>
                    <exon start="77340" stop="77402"/>
                    <exon start="78075" stop="78208"/>
                    <exon start="78365" stop="78446"/>
                    <exon start="78535" stop="78593"/>
                    <exon start="78698" stop="78743"/>
                    <exon start="79129" stop="79220"/>
                    <exon start="79309" stop="79378"/>
                    <exon start="79494" stop="79565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1791</number_coding_nucleotides>
                  <number_encoded_amino_acids>597</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISTLISNGRSSMPVEVANVVTEAIGNPKGDLRPQNPNAASKKSKESDRRRRRRKQKKNKAASKVANGEDSDNAAQDANGGAEDSSKENSDPQKSLVQVEVEYVPEKAELDGEFDEEFRKVFEKFTFTDATGSEENDKKDETAADGASKKKADSDSEEEEEDAQQKEKGVSNKKKKLQRRMKIAELKQISMKPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGDLYYEGKEFEVKLREMKPGTLSHELKEALGMPEGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPHGAKFGYQPGGWGKPPVDEYGRPLYGDVFGVLQQDQPNYEDEPVDKTKHWGDLEEEEEEEEEEEEEELEEEEMEDGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPEKPLYQVLEEKEEKVAPGTLLGTSHTYVINTGAQDKAGAKRVDLLKGQKSDRVDVTLAPEELELMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69600" e_stop="69961"/>
            <exon e_start="73299" e_stop="73418"/>
            <exon e_start="73512" e_stop="73637"/>
            <exon e_start="73737" e_stop="73799"/>
            <exon e_start="74577" e_stop="74684"/>
            <exon e_start="75280" e_stop="75357"/>
            <exon e_start="76046" e_stop="76138"/>
            <exon e_start="76250" e_stop="76336"/>
            <exon e_start="76882" e_stop="76983"/>
            <exon e_start="77108" e_stop="77227"/>
            <exon e_start="77340" e_stop="77402"/>
            <exon e_start="78075" e_stop="78208"/>
            <exon e_start="78365" e_stop="78446"/>
            <exon e_start="78535" e_stop="78593"/>
            <exon e_start="78698" e_stop="78743"/>
            <exon e_start="79129" e_stop="79220"/>
            <exon e_start="79309" e_stop="79378"/>
            <exon e_start="79494" e_stop="79845"/>
            <exon e_start="80412" e_stop="80442"/>
            <exon e_start="81001" e_stop="81018"/>
            <exon e_start="82171" e_stop="82241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.645"/>
          <exon-intron don_prob="0.000" acc_prob="0.841" e_score="0.944"/>
          <exon-only e_score="0.465"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69600" e_stop="69961" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69962" i_stop="73298" i_length="3337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73299" e_stop="73418" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="73419" i_stop="73511" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73512" e_stop="73637" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.971">
            <gDNA_intron_boundary i_start="73638" i_stop="73736" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73737" e_stop="73799" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73800" i_stop="74576" i_length="777"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74577" e_stop="74684" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74685" i_stop="75279" i_length="595"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75280" e_stop="75357" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75358" i_stop="76045" i_length="688"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76046" e_stop="76138" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="0.974">
            <gDNA_intron_boundary i_start="76139" i_stop="76249" i_length="111"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76250" e_stop="76336" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76337" i_stop="76881" i_length="545"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="76882" e_stop="76983" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="76984" i_stop="77107" i_length="124"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="77108" e_stop="77227" e_length="120"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="77228" i_stop="77339" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="77340" e_stop="77402" e_length="63"/>
          </exon>
          <intron i_serial="11" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77403" i_stop="78074" i_length="672"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="78075" e_stop="78208" e_length="134"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78209" i_stop="78364" i_length="156"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="78365" e_stop="78446" e_length="82"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78447" i_stop="78534" i_length="88"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="78535" e_stop="78593" e_length="59"/>
          </exon>
          <intron i_serial="14" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78594" i_stop="78697" i_length="104"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="78698" e_stop="78743" e_length="46"/>
          </exon>
          <intron i_serial="15" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="78744" i_stop="79128" i_length="385"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="79129" e_stop="79220" e_length="92"/>
          </exon>
          <intron i_serial="16" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="79309" e_stop="79378" e_length="70"/>
          </exon>
          <intron i_serial="17" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79379" i_stop="79493" i_length="115"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="79494" e_stop="79845" e_length="352"/>
          </exon>
          <intron i_serial="18" don_prob="0.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="79846" i_stop="80411" i_length="566"/>
          </intron>
          <exon e_serial="19" e_score="0.645">
            <gDNA_exon_boundary e_start="80412" e_stop="80442" e_length="31"/>
          </exon>
          <intron i_serial="19" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80443" i_stop="81000" i_length="558"/>
          </intron>
          <exon e_serial="20" e_score="0.944">
            <gDNA_exon_boundary e_start="81001" e_stop="81018" e_length="18"/>
          </exon>
          <intron i_serial="20" don_prob="0.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="81019" i_stop="82170" i_length="1152"/>
          </intron>
          <exon e_serial="21" e_score="0.465">
            <gDNA_exon_boundary e_start="82171" e_stop="82241" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69600" stop="69961"/>
              <exon start="73299" stop="73418"/>
              <exon start="73512" stop="73637"/>
              <exon start="73737" stop="73799"/>
              <exon start="74577" stop="74684"/>
              <exon start="75280" stop="75332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69617" stop="69961"/>
              <exon start="73299" stop="73418"/>
              <exon start="73512" stop="73637"/>
              <exon start="73737" stop="73799"/>
              <exon start="74577" stop="74684"/>
              <exon start="75280" stop="75331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69624" stop="69869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73614" stop="73637"/>
              <exon start="73737" stop="73799"/>
              <exon start="74577" stop="74684"/>
              <exon start="75280" stop="75357"/>
              <exon start="76046" stop="76138"/>
              <exon start="76250" stop="76336"/>
              <exon start="76882" stop="76947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74577" stop="74684"/>
              <exon start="75280" stop="75357"/>
              <exon start="76046" stop="76138"/>
              <exon start="76250" stop="76336"/>
              <exon start="76882" stop="76983"/>
              <exon start="77108" stop="77227"/>
              <exon start="77340" stop="77402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76910" stop="76983"/>
              <exon start="77108" stop="77227"/>
              <exon start="77340" stop="77402"/>
              <exon start="78075" stop="78208"/>
              <exon start="78365" stop="78446"/>
              <exon start="78535" stop="78593"/>
              <exon start="78698" stop="78743"/>
              <exon start="79129" stop="79220"/>
              <exon start="79309" stop="79377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78075" stop="78208"/>
              <exon start="78365" stop="78446"/>
              <exon start="78535" stop="78593"/>
              <exon start="78698" stop="78743"/>
              <exon start="79129" stop="79220"/>
              <exon start="79309" stop="79359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79184" stop="79220"/>
              <exon start="79309" stop="79378"/>
              <exon start="79494" stop="79845"/>
              <exon start="80412" stop="80442"/>
              <exon start="81001" stop="81018"/>
              <exon start="82171" stop="82241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTCATCTTTCGACTCCCTCCATTTTTCTTTCTCTTCACCTTCTCCTATAACTCCACCGGAAAAAAAATATCTCAACTGAATATCTACATTAATCTCAAACGGCCGGAGTAGTATGCCGGTTGAAGTAGCAAACGTAGTGACAGAAGCCATTGGTAATCCAAAAGGCGATTTGAGACCTCAAAACCCTAACGCCGCCTCTAAGAAGTCGAAGGAAAGCGACCGACGCCGTAGGCGGAGGAAGCAGAAGAAGAACAAGGCGGCGTCTAAGGTTGCAAATGGAGAAGACAGTGATAACGCTGCGCAAGACGCGAACGGCGGCGCTGAGGATAGTTCCAAGGAAAATTCCGATCCTCAGAAG : TCTTTGGTTCAAGTTGAAGTAGAATATGTACCAGAGAAGGCCGAATTAGATGGTGAGTTCGATGAGGAATTCAGGAAGGTTTTTGAGAAATTCACTTTCACGGATGCTACTGGTTCTGAG : GAGAATGATAAAAAGGATGAAACTGCTGCTGATGGAGCCTCAAAGAAAAAGGCGGATTCTGATTCTGAGGAGGAAGAAGAGGATGCACAGCAAAAGGAGAAGGGAGTCTCGAACAAAAAGAAAAAA : CTTCAGCGTAGGATGAAAATTGCAGAACTGAAACAAATCTCTATGAAGCCTGATGTTGTTGAG : GTATGGGATGCCACTGCAGCAGACCCTAAGCTCCTGGTATTTCTGAAATCTTACCGGAATACTGTTCCTGTTCCAAGACACTGGTGTCAGAAACGGAAATTTTTGCAG : GGGAAGCGTGGGATTGAGAAACAGCCATTTCAACTTCCTGACTTTATAGCTGCGACAGGAATTGAGAAAATTAGACAA : GCTTATATTGAAAAGGAGGACAGTAAGAAGCTTAAACAAAAGCAGCGGGAAAGGATGCAGCCAAAAATGGGGAAGATGGATATCGATTATCAG : GTTCTACATGACGCCTTTTTTAAGTATCAAACTAAACCAAAGTTGACATCCCTTGGTGATCTGTATTATGAAGGAAAAGAGTTTGAG : GTCAAGTTGAGGGAAATGAAACCTGGAACTTTGTCTCATGAACTGAAAGAGGCCCTTGGTATGCCTGAAGGTGCTCCTCCTCCATGGCTCATCAATATGCAG : AGATATGGTCCTCCACCCTCTTATCCTCAGCTGAAGATTCCTGGACTGAATGCTCCTATTCCACATGGAGCCAAGTTCGGTTATCAGCCGGGAGGTTGGGGTAAACCACCTGTTGATGAA : TATGGGCGCCCTTTATACGGAGATGTCTTTGGTGTATTGCAACAAGATCAGCCTAATTATGAG : GATGAACCTGTTGATAAGACTAAACATTGGGGTGACTTGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGTTGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCAAG : TACTCCTACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTATCAG : GTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATAC : GTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCAAAAGG : GTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA : ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAG : AATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTA : AATTAAAAAAAAAGGATCGAACATAGAATAA : AAAAAAAAAAAAAAACAA : GAATATGAGAAAAAATAAAAATAAAAGGTGGGTGTTACCCTTTTGTAAGCATCTTCTTGGATCTGTATAAA</gDNA_template>
            <first_frame> L  L  H  L  S  T  P  S  I  F  L  S  L  H  L  L  L  *  L  H  R  K  K  N  I  S  T  E  Y  L  H  *  S  Q  T  A  G  V  V  C  R  L  K  *  Q  T  *  *  Q  K  P  L  V  I  Q  K  A  I  *  D  L  K  T  L  T  P  P  L  R  S  R  R  K  A  T  D  A  V  G  G  G  S  R  R  R  T  R  R  R  L  R  L  Q  M  E  K  T  V  I  T  L  R  K  T  R  T  A  A  L  R  I  V  P  R  K  I  P  I  L  R  S :   L  W  F  K  L  K  *  N  M  Y  Q  R  R  P  N  *  M  V  S  S  M  R  N  S  G  R  F  L  R  N  S  L  S  R  M  L  L  V  L  R :   R  M  I  K  R  M  K  L  L  L  M  E  P  Q  R  K  R  R  I  L  I  L  R  R  K  K  R  M  H  S  K  R  R  R  E  S  R  T  K  R  K  N :   F  S  V  G  *  K  L  Q  N  *  N  K  S  L  *  S  L  M  L  L  R :   Y  G  M  P  L  Q  Q  T  L  S  S  W  Y  F  *  N  L  T  G  I  L  F  L  F  Q  D  T  G  V  R  N  G  N  F  C  R :   G  S  V  G  L  R  N  S  H  F  N  F  L  T  L  *  L  R  Q  E  L  R  K  L  D  K :   L  I  L  K  R  R  T  V  R  S  L  N  K  S  S  G  K  G  C  S  Q  K  W  G  R  W  I  S  I  I  R :   F  Y  M  T  P  F  L  S  I  K  L  N  Q  S  *  H  P  L  V  I  C  I  M  K  E  K  S  L  R :   S  S  *  G  K  *  N  L  E  L  C  L  M  N  *  K  R  P  L  V  C  L  K  V  L  L  L  H  G  S  S  I  C  R :   D  M  V  L  H  P  L  I  L  S  *  R  F  L  D  *  M  L  L  F  H  M  E  P  S  S  V  I  S  R  E  V  G  V  N  H  L  L  M  N :   M  G  A  L  Y  T  E  M  S  L  V  Y  C  N  K  I  S  L  I  M  R :   M  N  L  L  I  R  L  N  I  G  V  T  W  R  K  R  K  K  R  R  K  R  R  K  K  K  S  W  R  K  R  R  W  R  T  V  F  S  Q  W  T  V  F  Q   : V  L  L  L  E  L  R  L  L  M  L  L  T  F  A  S  S  R  G  R  S  P  R  S  P  S  I  R :   C  L  K  K  K  K  K  R  *  L  L  V  L  F  L  E  Q  A  I   : R  M  *  S  T  L  A  L  K  T  R  L  V  P  K  G :   L  I  C  S  K  V  R  S  R  I  E  L  M  S  H  W  H  L  K  S  W  N  L  W  T  M  F  Y  Q  P   : N  T  R  K  L  E  R  K  R  S  S  V  A  S  V  R  I  S  V  T  W  *  Q  R :   M  R  R  R  G  S  V  K  C  R  R  R  M  A  S  R  R  R  R  I  S  S  F  E  V  L  I  Y  C  S  I  *  F  R  A  A  V  H  P  A  *  G  N  S  I  S  R  S  P  Y  A  L  R  *  I  S  Y  A  V  M  R  V  F  S  H  A  L  K  R  G  E  L  V  Y  D  N  L  S  Y  E  M  C  L  V  C  T  S  C  F  I  S  T  Y  V  E  L  Y  V  K  I  E  N  L  L  P  *  F  R  C  M  L  D  L  V  I  I  L  :  N  *  K  K  R  I  E  H  R  I   : K  K  K  K  K  T   : R  I  *  E  K  I  K  I  K  G  G  C  Y  P  F  V  S  I  F  L  D  L  Y  K </first_frame>
            <second_frame>  F  F  I  F  R  L  P  P  F  F  F  L  F  T  F  S  Y  N  S  T  G  K  K  I  S  Q  L  N  I  Y  I  N  L  K  R  P  E  *  Y  A  G  *  S  S  K  R  S  D  R  S  H  W  *  S  K  R  R  F  E  T  S  K  P  *  R  R  L  *  E  V  E  G  K  R  P  T  P  *  A  E  E  A  E  E  E  Q  G  G  V  *  G  C  K  W  R  R  Q  *  *  R  C  A  R  R  E  R  R  R  *  G  *  F  Q  G  K  F  R  S  S  E   : V  F  G  S  S  *  S  R  I  C  T  R  E  G  R  I  R  W  *  V  R  *  G  I  Q  E  G  F  *  E  I  H  F  H  G  C  Y  W  F  *   : G  E  *  *  K  G  *  N  C  C  *  W  S  L  K  E  K  G  G  F  *  F  *  G  G  R  R  G  C  T  A  K  G  E  G  S  L  E  Q  K  E  K   : T  S  A  *  D  E  N  C  R  T  E  T  N  L  Y  E  A  *  C  C  *   : G  M  G  C  H  C  S  R  P  *  A  P  G  I  S  E  I  L  P  E  Y  C  S  C  S  K  T  L  V  S  E  T  E  I  F  A   : G  E  A  W  D  *  E  T  A  I  S  T  S  *  L  Y  S  C  D  R  N  *  E  N  *  T   : S  L  Y  *  K  G  G  Q  *  E  A  *  T  K  A  A  G  K  D  A  A  K  N  G  E  D  G  Y  R  L  S   : G  S  T  *  R  L  F  *  V  S  N  *  T  K  V  D  I  P  W  *  S  V  L  *  R  K  R  V  *   : G  Q  V  E  G  N  E  T  W  N  F  V  S  *  T  E  R  G  P  W  Y  A  *  R  C  S  S  S  M  A  H  Q  Y  A   : E  I  W  S  S  T  L  L  S  S  A  E  D  S  W  T  E  C  S  Y  S  T  W  S  Q  V  R  L  S  A  G  R  L  G  *  T  T  C  *  *   : I  W  A  P  F  I  R  R  C  L  W  C  I  A  T  R  S  A  *  L  *   : G  *  T  C  *  *  D  *  T  L  G  *  L  G  G  R  G  R  R  G  G  R  G  G  R  R  R  V  G  G  R  G  D  G  G  R  Y  S  V  S  G  Q  S  F  K  :  Y  S  Y  W  S  *  D  S  *  C  Y  *  P  S  Q  A  A  E  E  G  A  R  E  A  P  L  S   : G  A  *  R  K  R  R  K  G  S  S  W  Y  S  S  W  N  K  P  Y  :  V  C  D  Q  H  W  R  S  R  Q  G  W  C  Q  K   : G  *  S  A  Q  R  S  E  V  G  *  S  *  C  H  I  G  T  *  R  V  G  T  Y  G  Q  C  F  T  S  Q  :  I  R  G  S  *  R  G  R  E  A  P  *  P  A  *  G  F  Q  *  H  G  S  R   : E  *  E  E  E  E  A  *  N  A  G  E  G  W  Q  V  E  E  E  G  F  Q  V  L  R  F  *  Y  I  V  P  S  S  L  G  L  Q  Y  I  Q  L  R  V  I  A  L  V  G  L  H  M  H  C  D  K  S  R  M  L  *  *  E  C  F  P  M  R  *  S  G  E  S  W  C  M  I  I  Y  P  M  K  C  A  *  F  V  P  L  V  S  F  L  H  T  L  S  C  M  *  K  *  K  I  S  C  P  N  L  D  V  C  S  T  W  L  *  F  * :   I  K  K  K  G  S  N  I  E  *  :  K  K  K  K  K  Q  :  E  Y  E  K  K  *  K  *  K  V  G  V  T  L  L  *  A  S  S  W  I  C  I   </second_frame>
            <third_frame>   S  S  S  F  D  S  L  H  F  S  F  S  S  P  S  P  I  T  P  P  E  K  K  Y  L  N  *  I  S  T  L  I  S  N  G  R  S  S  M  P  V  E  V  A  N  V  V  T  E  A  I  G  N  P  K  G  D  L  R  P  Q  N  P  N  A  A  S  K  K  S  K  E  S  D  R  R  R  R  R  R  K  Q  K  K  N  K  A  A  S  K  V  A  N  G  E  D  S  D  N  A  A  Q  D  A  N  G  G  A  E  D  S  S  K  E  N  S  D  P  Q  K  :  S  L  V  Q  V  E  V  E  Y  V  P  E  K  A  E  L  D  G  E  F  D  E  E  F  R  K  V  F  E  K  F  T  F  T  D  A  T  G  S  E  :  E  N  D  K  K  D  E  T  A  A  D  G  A  S  K  K  K  A  D  S  D  S  E  E  E  E  E  D  A  Q  Q  K  E  K  G  V  S  N  K  K  K  K  :  L  Q  R  R  M  K  I  A  E  L  K  Q  I  S  M  K  P  D  V  V  E  :  V  W  D  A  T  A  A  D  P  K  L  L  V  F  L  K  S  Y  R  N  T  V  P  V  P  R  H  W  C  Q  K  R  K  F  L  Q  :  G  K  R  G  I  E  K  Q  P  F  Q  L  P  D  F  I  A  A  T  G  I  E  K  I  R  Q  :  A  Y  I  E  K  E  D  S  K  K  L  K  Q  K  Q  R  E  R  M  Q  P  K  M  G  K  M  D  I  D  Y  Q  :  V  L  H  D  A  F  F  K  Y  Q  T  K  P  K  L  T  S  L  G  D  L  Y  Y  E  G  K  E  F  E  :  V  K  L  R  E  M  K  P  G  T  L  S  H  E  L  K  E  A  L  G  M  P  E  G  A  P  P  P  W  L  I  N  M  Q  :  R  Y  G  P  P  P  S  Y  P  Q  L  K  I  P  G  L  N  A  P  I  P  H  G  A  K  F  G  Y  Q  P  G  G  W  G  K  P  P  V  D  E  :  Y  G  R  P  L  Y  G  D  V  F  G  V  L  Q  Q  D  Q  P  N  Y  E  :  D  E  P  V  D  K  T  K  H  W  G  D  L  E  E  E  E  E  E  E  E  E  E  E  E  E  E  L  E  E  E  E  M  E  D  G  I  Q  S  V  D  S  L  S  S :   T  P  T  G  V  E  T  P  D  V  I  D  L  R  K  Q  Q  R  K  E  P  E  K  P  L  Y  Q  :  V  L  E  E  K  E  E  K  V  A  P  G  T  L  L  G  T  S  H  T :   Y  V  I  N  T  G  A  Q  D  K  A  G  A  K  R  :  V  D  L  L  K  G  Q  K  S  D  R  V  D  V  T  L  A  P  E  E  L  E  L  M  D  N  V  L  P  A  K :   Y  E  E  A  R  E  E  E  K  L  R  S  Q  R  E  D  F  S  D  M  V  A  E  :  N  E  K  K  R  K  R  K  M  Q  E  K  D  G  K  S  K  K  K  D  F  K  F  *  G  S  D  I  L  F  H  L  V  *  G  C  S  T  S  S  L  G  *  *  H  *  *  V  S  I  C  T  A  I  N  L  V  C  C  D  E  S  V  F  P  C  V  E  A  G  R  V  G  V  *  *  S  I  L  *  N  V  L  S  L  Y  L  L  F  H  F  Y  I  R  *  A  V  C  E  N  R  K  S  L  A  L  I  *  M  Y  A  R  L  G  Y  N  F   : K  L  K  K  K  D  R  T  *  N  K :   K  K  K  K  N  K :   N  M  R  K  N  K  N  K  R  W  V  L  P  F  C  K  H  L  L  G  S  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69683" stop="69961"/>
                    <exon start="73299" stop="73418"/>
                    <exon start="73512" stop="73637"/>
                    <exon start="73737" stop="73799"/>
                    <exon start="74577" stop="74684"/>
                    <exon start="75280" stop="75357"/>
                    <exon start="76046" stop="76138"/>
                    <exon start="76250" stop="76336"/>
                    <exon start="76882" stop="76983"/>
                    <exon start="77108" stop="77227"/>
                    <exon start="77340" stop="77402"/>
                    <exon start="78075" stop="78208"/>
                    <exon start="78365" stop="78446"/>
                    <exon start="78535" stop="78593"/>
                    <exon start="78698" stop="78743"/>
                    <exon start="79129" stop="79220"/>
                    <exon start="79309" stop="79378"/>
                    <exon start="79494" stop="79565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1791</number_coding_nucleotides>
                  <number_encoded_amino_acids>597</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISTLISNGRSSMPVEVANVVTEAIGNPKGDLRPQNPNAASKKSKESDRRRRRRKQKKNKAASKVANGEDSDNAAQDANGGAEDSSKENSDPQKSLVQVEVEYVPEKAELDGEFDEEFRKVFEKFTFTDATGSEENDKKDETAADGASKKKADSDSEEEEEDAQQKEKGVSNKKKKLQRRMKIAELKQISMKPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGDLYYEGKEFEVKLREMKPGTLSHELKEALGMPEGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPHGAKFGYQPGGWGKPPVDEYGRPLYGDVFGVLQQDQPNYEDEPVDKTKHWGDLEEEEEEEEEEEEEELEEEEMEDGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPEKPLYQVLEEKEEKVAPGTLLGTSHTYVINTGAQDKAGAKRVDLLKGQKSDRVDVTLAPEELELMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="77806" e_stop="77816"/>
            <exon e_start="78075" e_stop="78208"/>
            <exon e_start="78365" e_stop="78446"/>
            <exon e_start="78535" e_stop="78593"/>
            <exon e_start="78698" e_stop="78743"/>
            <exon e_start="79129" e_stop="79220"/>
            <exon e_start="79309" e_stop="79378"/>
            <exon e_start="79494" e_stop="79845"/>
            <exon e_start="80389" e_stop="80476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="0.818"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.511"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.818">
            <gDNA_exon_boundary e_start="77806" e_stop="77816" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77817" i_stop="78074" i_length="258"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="78075" e_stop="78208" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78209" i_stop="78364" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="78365" e_stop="78446" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78447" i_stop="78534" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78535" e_stop="78593" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78594" i_stop="78697" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78698" e_stop="78743" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="78744" i_stop="79128" i_length="385"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79129" e_stop="79220" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79309" e_stop="79378" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79379" i_stop="79493" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="79494" e_stop="79845" e_length="352"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79846" i_stop="80388" i_length="543"/>
          </intron>
          <exon e_serial="9" e_score="0.511">
            <gDNA_exon_boundary e_start="80389" e_stop="80476" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77806" stop="77816"/>
              <exon start="78075" stop="78208"/>
              <exon start="78365" stop="78446"/>
              <exon start="78535" stop="78593"/>
              <exon start="78698" stop="78743"/>
              <exon start="79129" stop="79220"/>
              <exon start="79309" stop="79378"/>
              <exon start="79494" stop="79747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78075" stop="78208"/>
              <exon start="78365" stop="78446"/>
              <exon start="78535" stop="78593"/>
              <exon start="78698" stop="78743"/>
              <exon start="79129" stop="79220"/>
              <exon start="79309" stop="79359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79129" stop="79220"/>
              <exon start="79309" stop="79378"/>
              <exon start="79494" stop="79845"/>
              <exon start="80389" stop="80476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAATGATAAG : GATGAACCTGTTGATAAGACTAAACATTGGGGTGACTTGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGTTGGAGGAAGAGGAGATGGAGGACGGTATTCAGTCAGTGGACAGTCTTTCAAG : TACTCCTACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGCAAGCAGCAGAGGAAGGAGCCCGAGAAGCCCCTCTATCAG : GTGCTTGAAGAAAAAGAAGAAAAGGTAGCTCCTGGTACTCTTCTTGGAACAAGCCATAC : GTATGTGATCAACACTGGCGCTCAAGACAAGGCTGGTGCCAAAAGG : GTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA : ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAG : AATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTA : TAAAACATTAATACAATAAACAGAATTAAAAAAAAAGGATCGAACATAGAATAAGCAGTGATGGAGACATCTTTTGTTCAAAACACGT</gDNA_template>
            <first_frame> L  M  I  R :   M  N  L  L  I  R  L  N  I  G  V  T  W  R  K  R  K  K  R  R  K  R  R  K  K  K  S  W  R  K  R  R  W  R  T  V  F  S  Q  W  T  V  F  Q   : V  L  L  L  E  L  R  L  L  M  L  L  T  F  A  S  S  R  G  R  S  P  R  S  P  S  I  R :   C  L  K  K  K  K  K  R  *  L  L  V  L  F  L  E  Q  A  I   : R  M  *  S  T  L  A  L  K  T  R  L  V  P  K  G :   L  I  C  S  K  V  R  S  R  I  E  L  M  S  H  W  H  L  K  S  W  N  L  W  T  M  F  Y  Q  P   : N  T  R  K  L  E  R  K  R  S  S  V  A  S  V  R  I  S  V  T  W  *  Q  R :   M  R  R  R  G  S  V  K  C  R  R  R  M  A  S  R  R  R  R  I  S  S  F  E  V  L  I  Y  C  S  I  *  F  R  A  A  V  H  P  A  *  G  N  S  I  S  R  S  P  Y  A  L  R  *  I  S  Y  A  V  M  R  V  F  S  H  A  L  K  R  G  E  L  V  Y  D  N  L  S  Y  E  M  C  L  V  C  T  S  C  F  I  S  T  Y  V  E  L  Y  V  K  I  E  N  L  L  P  *  F  R  C  M  L  D  L  V  I  I  L  :  *  N  I  N  T  I  N  R  I  K  K  K  G  S  N  I  E  *  A  V  M  E  T  S  F  V  Q  N  T  </first_frame>
            <second_frame>  *  *  *   : G  *  T  C  *  *  D  *  T  L  G  *  L  G  G  R  G  R  R  G  G  R  G  G  R  R  R  V  G  G  R  G  D  G  G  R  Y  S  V  S  G  Q  S  F  K  :  Y  S  Y  W  S  *  D  S  *  C  Y  *  P  S  Q  A  A  E  E  G  A  R  E  A  P  L  S   : G  A  *  R  K  R  R  K  G  S  S  W  Y  S  S  W  N  K  P  Y  :  V  C  D  Q  H  W  R  S  R  Q  G  W  C  Q  K   : G  *  S  A  Q  R  S  E  V  G  *  S  *  C  H  I  G  T  *  R  V  G  T  Y  G  Q  C  F  T  S  Q  :  I  R  G  S  *  R  G  R  E  A  P  *  P  A  *  G  F  Q  *  H  G  S  R   : E  *  E  E  E  E  A  *  N  A  G  E  G  W  Q  V  E  E  E  G  F  Q  V  L  R  F  *  Y  I  V  P  S  S  L  G  L  Q  Y  I  Q  L  R  V  I  A  L  V  G  L  H  M  H  C  D  K  S  R  M  L  *  *  E  C  F  P  M  R  *  S  G  E  S  W  C  M  I  I  Y  P  M  K  C  A  *  F  V  P  L  V  S  F  L  H  T  L  S  C  M  *  K  *  K  I  S  C  P  N  L  D  V  C  S  T  W  L  *  F  Y :   K  T  L  I  Q  *  T  E  L  K  K  K  D  R  T  *  N  K  Q  *  W  R  H  L  L  F  K  T  R </second_frame>
            <third_frame>   N  D  K  :  D  E  P  V  D  K  T  K  H  W  G  D  L  E  E  E  E  E  E  E  E  E  E  E  E  E  E  L  E  E  E  E  M  E  D  G  I  Q  S  V  D  S  L  S  S :   T  P  T  G  V  E  T  P  D  V  I  D  L  R  K  Q  Q  R  K  E  P  E  K  P  L  Y  Q  :  V  L  E  E  K  E  E  K  V  A  P  G  T  L  L  G  T  S  H  T :   Y  V  I  N  T  G  A  Q  D  K  A  G  A  K  R  :  V  D  L  L  K  G  Q  K  S  D  R  V  D  V  T  L  A  P  E  E  L  E  L  M  D  N  V  L  P  A  K :   Y  E  E  A  R  E  E  E  K  L  R  S  Q  R  E  D  F  S  D  M  V  A  E  :  N  E  K  K  R  K  R  K  M  Q  E  K  D  G  K  S  K  K  K  D  F  K  F  *  G  S  D  I  L  F  H  L  V  *  G  C  S  T  S  S  L  G  *  *  H  *  *  V  S  I  C  T  A  I  N  L  V  C  C  D  E  S  V  F  P  C  V  E  A  G  R  V  G  V  *  *  S  I  L  *  N  V  L  S  L  Y  L  L  F  H  F  Y  I  R  *  A  V  C  E  N  R  K  S  L  A  L  I  *  M  Y  A  R  L  G  Y  N  F   : I  K  H  *  Y  N  K  Q  N  *  K  K  R  I  E  H  R  I  S  S  D  G  D  I  F  C  S  K  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77808" stop="77816"/>
                    <exon start="78075" stop="78208"/>
                    <exon start="78365" stop="78446"/>
                    <exon start="78535" stop="78593"/>
                    <exon start="78698" stop="78743"/>
                    <exon start="79129" stop="79220"/>
                    <exon start="79309" stop="79378"/>
                    <exon start="79494" stop="79565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDKDEPVDKTKHWGDLEEEEEEEEEEEEEELEEEEMEDGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPEKPLYQVLEEKEEKVAPGTLLGTSHTYVINTGAQDKAGAKRVDLLKGQKSDRVDVTLAPEELELMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="79127" e_stop="79220"/>
            <exon e_start="79309" e_stop="79378"/>
            <exon e_start="79494" e_stop="79851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.957"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="79127" e_stop="79220" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79221" i_stop="79308" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79309" e_stop="79378" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79379" i_stop="79493" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="79494" e_stop="79851" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79127" stop="79220"/>
              <exon start="79309" stop="79378"/>
              <exon start="79494" stop="79851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTGATCTGCTCAAAGGTCAGAAGTCGGATAGAGTTGATGTCACATTGGCACCTGAAGAGTTGGAACTTATGGACAATGTTTTACCAGCCAA : ATACGAGGAAGCTAGAGAGGAAGAGAAGCTCCGTAGCCAGCGTGAGGATTTCAGTGACATGGTAGCAGAG : AATGAGAAGAAGAGGAAGCGTAAAATGCAGGAGAAGGATGGCAAGTCGAAGAAGAAGGATTTCAAGTTTTGAGGTTCTGATATATTGTTCCATCTAGTTTAGGGCTGCAGTACATCCAGCTTAGGGTAATAGCATTAGTAGGTCTCCATATGCACTGCGATAAATCTCGTATGCTGTGATGAGAGTGTTTTCCCATGCGTTGAAGCGGGGAGAGTTGGTGTATGATAATCTATCCTATGAAATGTGCTTAGTTTGTACCTCTTGTTTCATTTCTACATACGTTGAGCTGTATGTGAAAATAGAAAATCTCTTGCCCTAATTTAGATGTATGCTCGACTTGGTTATAATTTTAGTATTA</gDNA_template>
            <first_frame> R  L  I  C  S  K  V  R  S  R  I  E  L  M  S  H  W  H  L  K  S  W  N  L  W  T  M  F  Y  Q  P   : N  T  R  K  L  E  R  K  R  S  S  V  A  S  V  R  I  S  V  T  W  *  Q  R :   M  R  R  R  G  S  V  K  C  R  R  R  M  A  S  R  R  R  R  I  S  S  F  E  V  L  I  Y  C  S  I  *  F  R  A  A  V  H  P  A  *  G  N  S  I  S  R  S  P  Y  A  L  R  *  I  S  Y  A  V  M  R  V  F  S  H  A  L  K  R  G  E  L  V  Y  D  N  L  S  Y  E  M  C  L  V  C  T  S  C  F  I  S  T  Y  V  E  L  Y  V  K  I  E  N  L  L  P  *  F  R  C  M  L  D  L  V  I  I  L  V  L </first_frame>
            <second_frame>  G  *  S  A  Q  R  S  E  V  G  *  S  *  C  H  I  G  T  *  R  V  G  T  Y  G  Q  C  F  T  S  Q  :  I  R  G  S  *  R  G  R  E  A  P  *  P  A  *  G  F  Q  *  H  G  S  R   : E  *  E  E  E  E  A  *  N  A  G  E  G  W  Q  V  E  E  E  G  F  Q  V  L  R  F  *  Y  I  V  P  S  S  L  G  L  Q  Y  I  Q  L  R  V  I  A  L  V  G  L  H  M  H  C  D  K  S  R  M  L  *  *  E  C  F  P  M  R  *  S  G  E  S  W  C  M  I  I  Y  P  M  K  C  A  *  F  V  P  L  V  S  F  L  H  T  L  S  C  M  *  K  *  K  I  S  C  P  N  L  D  V  C  S  T  W  L  *  F  *  Y   </second_frame>
            <third_frame>   V  D  L  L  K  G  Q  K  S  D  R  V  D  V  T  L  A  P  E  E  L  E  L  M  D  N  V  L  P  A  K :   Y  E  E  A  R  E  E  E  K  L  R  S  Q  R  E  D  F  S  D  M  V  A  E  :  N  E  K  K  R  K  R  K  M  Q  E  K  D  G  K  S  K  K  K  D  F  K  F  *  G  S  D  I  L  F  H  L  V  *  G  C  S  T  S  S  L  G  *  *  H  *  *  V  S  I  C  T  A  I  N  L  V  C  C  D  E  S  V  F  P  C  V  E  A  G  R  V  G  V  *  *  S  I  L  *  N  V  L  S  L  Y  L  L  F  H  F  Y  I  R  *  A  V  C  E  N  R  K  S  L  A  L  I  *  M  Y  A  R  L  G  Y  N  F  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79129" stop="79220"/>
                    <exon start="79309" stop="79378"/>
                    <exon start="79494" stop="79565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDLLKGQKSDRVDVTLAPEELELMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="88869" PGL_stop="85604"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88869" e_stop="88754"/>
            <exon e_start="86715" e_stop="86516"/>
            <exon e_start="86379" e_stop="85604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88869" e_stop="88754" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88753" i_stop="86716" i_length="2038"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86715" e_stop="86516" e_length="200"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="86515" i_stop="86380" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="86379" e_stop="85604" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88869" stop="88754"/>
              <exon start="86715" stop="86516"/>
              <exon start="86379" stop="85828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88868" stop="88754"/>
              <exon start="86715" stop="86516"/>
              <exon start="86379" stop="85778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88868" stop="88754"/>
              <exon start="86715" stop="86516"/>
              <exon start="86379" stop="86050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88868" stop="88754"/>
              <exon start="86715" stop="86516"/>
              <exon start="86379" stop="86087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88864" stop="88754"/>
              <exon start="86715" stop="86516"/>
              <exon start="86379" stop="85928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88864" stop="88754"/>
              <exon start="86715" stop="86516"/>
              <exon start="86379" stop="85952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88850" stop="88754"/>
              <exon start="86715" stop="86516"/>
              <exon start="86379" stop="86122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86188" stop="85604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATATAAAGTTTGTATAGCAAGATGGCTTCAACACTGTTACTAGTTTTGGTTTTTGTGCTTGATTTGATTGCTTTTGGACTTGCTGTTGCTGCTGAGCAGAGGAGGGCTACT : GCAACGATCAACAGAGATGCAGAGTATAACTACTGTGTGTATGAGTCAGATGTTGCAACTGGCTTGGGCGTGGGTTCATTCTTCTTTCTTTTATCTAGTCAGCTCCTCATAATGTTTGCAAGCCGATGTTTATGCTGTGGGAGGGCACTGCGACCAGGAAAGCCCCGATCATGGGCTATTGTCTTATTCATCACCTGCTG : GGTCACCTTCTTTATTGCTGAAGTGTGCTTACTGGCGGCTTCCGTTAGGAATGCCTACCACACAAAGTATAGGACTTACTTGGCACAACATCCTCCATCCTGCGAGGTTTTGAGGAAGGGAGTCTTTGGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGGCCGATGAAGGATCCATTCCTCCAAGAATGGATGGTGGCATAAGGATGAATGCGTTCATGTGAATCCATTGAGCAGAAGGAGGTTTTGGTTGTATACTCTCTAAGCTTTTGCACTTACTTAGACTGTGATATTGGTAACGTGGTATACTTAACCCTGTTGGCTTGCTGATTTGACTTCAACAGAATTAGAGATTCTGATCATTTGTCGCGACTTTATGTGCATCCTTCATCATTGTCCAAAATTTCTGAGTAGGGATATAGACATAGATAGATATAACTGCTACTTGTGATTTCTGTTATACAATGTTTTGAAGAAAGTTTTCTGGGGCCTTGAGATGATTCTAATGTTCCTATAATCCTATTGCCATTTCACAATCTGTTTTAGTAGAATATTCATTTTTCTTGACACGGTTTGAAACTCAGTGAATAATGGTTCTGCCCGCCCTACTATCCTTCCCCCCAAATGGGTTTGAATACCTGTTATGTGATTGTGATTGTGATTGTAATAGTGATAACAGATAAGTGTCATATAAATATGTTATCATTTCATTTATAATTAATTACGATATATTTTCACCTC</gDNA_template>
            <first_frame> Q  K  Y  K  V  C  I  A  R  W  L  Q  H  C  Y  *  F  W  F  L  C  L  I  *  L  L  L  D  L  L  L  L  L  S  R  G  G  L  L :   Q  R  S  T  E  M  Q  S  I  T  T  V  C  M  S  Q  M  L  Q  L  A  W  A  W  V  H  S  S  F  F  Y  L  V  S  S  S  *  C  L  Q  A  D  V  Y  A  V  G  G  H  C  D  Q  E  S  P  D  H  G  L  L  S  Y  S  S  P  A   : G  S  P  S  L  L  L  K  C  A  Y  W  R  L  P  L  G  M  P  T  T  Q  S  I  G  L  T  W  H  N  I  L  H  P  A  R  F  *  G  R  E  S  L  V  L  A  L  L  L  L  F  S  Q  A  S  S  L  N  F  S  T  S  A  I  P  R  P  M  K  D  P  F  L  Q  E  W  M  V  A  *  G  *  M  R  S  C  E  S  I  E  Q  K  E  V  L  V  V  Y  S  L  S  F  C  T  Y  L  D  C  D  I  G  N  V  V  Y  L  T  L  L  A  C  *  F  D  F  N  R  I  R  D  S  D  H  L  S  R  L  Y  V  H  P  S  S  L  S  K  I  S  E  *  G  Y  R  H  R  *  I  *  L  L  L  V  I  S  V  I  Q  C  F  E  E  S  F  L  G  P  *  D  D  S  N  V  P  I  I  L  L  P  F  H  N  L  F  *  *  N  I  H  F  S  *  H  G  L  K  L  S  E  *  W  F  C  P  P  Y  Y  P  S  P  Q  M  G  L  N  T  C  Y  V  I  V  I  V  I  V  I  V  I  T  D  K  C  H  I  N  M  L  S  F  H  L  *  L  I  T  I  Y  F  H  L </first_frame>
            <second_frame>  K  N  I  K  F  V  *  Q  D  G  F  N  T  V  T  S  F  G  F  C  A  *  F  D  C  F  W  T  C  C  C  C  *  A  E  E  G  Y   : C  N  D  Q  Q  R  C  R  V  *  L  L  C  V  *  V  R  C  C  N  W  L  G  R  G  F  I  L  L  S  F  I  *  S  A  P  H  N  V  C  K  P  M  F  M  L  W  E  G  T  A  T  R  K  A  P  I  M  G  Y  C  L  I  H  H  L  L  :  G  H  L  L  Y  C  *  S  V  L  T  G  G  F  R  *  E  C  L  P  H  K  V  *  D  L  L  G  T  T  S  S  I  L  R  G  F  E  E  G  S  L  W  C  W  R  C  F  Y  C  F  H  R  H  R  L  *  T  F  L  R  Q  L  F  Q  G  R  *  R  I  H  S  S  K  N  G  W  W  H  K  D  E  C  V  H  V  N  P  L  S  R  R  R  F  W  L  Y  T  L  *  A  F  A  L  T  *  T  V  I  L  V  T  W  Y  T  *  P  C  W  L  A  D  L  T  S  T  E  L  E  I  L  I  I  C  R  D  F  M  C  I  L  H  H  C  P  K  F  L  S  R  D  I  D  I  D  R  Y  N  C  Y  L  *  F  L  L  Y  N  V  L  K  K  V  F  W  G  L  E  M  I  L  M  F  L  *  S  Y  C  H  F  T  I  C  F  S  R  I  F  I  F  L  D  T  V  *  N  S  V  N  N  G  S  A  R  P  T  I  L  P  P  K  W  V  *  I  P  V  M  *  L  *  L  *  L  *  *  *  *  Q  I  S  V  I  *  I  C  Y  H  F  I  Y  N  *  L  R  Y  I  F  T   </second_frame>
            <third_frame>   K  I  *  S  L  Y  S  K  M  A  S  T  L  L  L  V  L  V  F  V  L  D  L  I  A  F  G  L  A  V  A  A  E  Q  R  R  A  T  :  A  T  I  N  R  D  A  E  Y  N  Y  C  V  Y  E  S  D  V  A  T  G  L  G  V  G  S  F  F  F  L  L  S  S  Q  L  L  I  M  F  A  S  R  C  L  C  C  G  R  A  L  R  P  G  K  P  R  S  W  A  I  V  L  F  I  T  C  W :   V  T  F  F  I  A  E  V  C  L  L  A  A  S  V  R  N  A  Y  H  T  K  Y  R  T  Y  L  A  Q  H  P  P  S  C  E  V  L  R  K  G  V  F  G  A  G  A  A  F  I  V  F  T  G  I  V  S  E  L  F  Y  V  S  Y  S  K  A  D  E  G  S  I  P  P  R  M  D  G  G  I  R  M  N  A  F  M  *  I  H  *  A  E  G  G  F  G  C  I  L  S  K  L  L  H  L  L  R  L  *  Y  W  *  R  G  I  L  N  P  V  G  L  L  I  *  L  Q  Q  N  *  R  F  *  S  F  V  A  T  L  C  A  S  F  I  I  V  Q  N  F  *  V  G  I  *  T  *  I  D  I  T  A  T  C  D  F  C  Y  T  M  F  *  R  K  F  S  G  A  L  R  *  F  *  C  S  Y  N  P  I  A  I  S  Q  S  V  L  V  E  Y  S  F  F  L  T  R  F  E  T  Q  *  I  M  V  L  P  A  L  L  S  F  P  P  N  G  F  E  Y  L  L  C  D  C  D  C  D  C  N  S  D  N  R  *  V  S  Y  K  Y  V  I  I  S  F  I  I  N  Y  D  I  F  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88858" stop="88754"/>
                    <exon start="86715" stop="86516"/>
                    <exon start="86379" stop="86121"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLYSKMASTLLLVLVFVLDLIAFGLAVAAEQRRATATINRDAEYNYCVYESDVATGLGVGSFFFLLSSQLLIMFASRCLCCGRALRPGKPRSWAIVLFITCWVTFFIAEVCLLAASVRNAYHTKYRTYLAQHPPSCEVLRKGVFGAGAAFIVFTGIVSELFYVSYSKADEGSIPPRMDGGIRMNAFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="85808" PGL_stop="86615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85808" e_stop="86373"/>
            <exon e_start="86506" e_stop="86615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.970" e_score="0.995"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="85808" e_stop="86373" e_length="566"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.970">
            <gDNA_intron_boundary i_start="86374" i_stop="86505" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="86506" e_stop="86615" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85808" stop="86373"/>
              <exon start="86506" stop="86615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGTGAAATGGCAATAGGATTATAGGAACATTAGAATCATCTCAAGGCCCCAGAAAACTTTCTTCAAAACATTGTATAACAGAAATCACAAGTAGCAGTTATATCTATCTATGTCTATATCCCTACTCAGAAATTTTGGACAATGATGAAGGATGCACATAAAGTCGCGACAAATGATCAGAATCTCTAATTCTGTTGAAGTCAAATCAGCAAGCCAACAGGGTTAAGTATACCACGTTACCAATATCACAGTCTAAGTAAGTGCAAAAGCTTAGAGAGTATACAACCAAAACCTCCTTCTGCTCAATGGATTCACATGAACGCATTCATCCTTATGCCACCATCCATTCTTGGAGGAATGGATCCTTCATCGGCCTTGGAATAGCTGACGTAGAAAAGTTCAGAGACGATGCCTGTGAAAACAATAAAAGCAGCGCCAGCACCAAAGACTCCCTTCCTCAAAACCTCGCAGGATGGAGGATGTTGTGCCAAGTAAGTCCTATACTTTGTGTGGTAGGCATTCCTAACGGAAGCCGCCAGTAAGCACACTTCAGCAATAAAGAAG : AGAAACATACCAGCAGGTGATGAATAAGACAATAGCCCATGATCGGGGCTTTCCTGGTCGCAGTGCCCTCCCACAGCATAAACATCGGCTTGCAAACATTATGAGGAGCT</gDNA_template>
            <first_frame> I  V  K  W  Q  *  D  Y  R  N  I  R  I  I  S  R  P  Q  K  T  F  F  K  T  L  Y  N  R  N  H  K  *  Q  L  Y  L  S  M  S  I  S  L  L  R  N  F  G  Q  *  *  R  M  H  I  K  S  R  Q  M  I  R  I  S  N  S  V  E  V  K  S  A  S  Q  Q  G  *  V  Y  H  V  T  N  I  T  V  *  V  S  A  K  A  *  R  V  Y  N  Q  N  L  L  L  L  N  G  F  T  *  T  H  S  S  L  C  H  H  P  F  L  E  E  W  I  L  H  R  P  W  N  S  *  R  R  K  V  Q  R  R  C  L  *  K  Q  *  K  Q  R  Q  H  Q  R  L  P  S  S  K  P  R  R  M  E  D  V  V  P  S  K  S  Y  T  L  C  G  R  H  S  *  R  K  P  P  V  S  T  L  Q  Q  *  R  R :   E  T  Y  Q  Q  V  M  N  K  T  I  A  H  D  R  G  F  P  G  R  S  A  L  P  Q  H  K  H  R  L  A  N  I  M  R  S  </first_frame>
            <second_frame>  L  *  N  G  N  R  I  I  G  T  L  E  S  S  Q  G  P  R  K  L  S  S  K  H  C  I  T  E  I  T  S  S  S  Y  I  Y  L  C  L  Y  P  Y  S  E  I  L  D  N  D  E  G  C  T  *  S  R  D  K  *  S  E  S  L  I  L  L  K  S  N  Q  Q  A  N  R  V  K  Y  T  T  L  P  I  S  Q  S  K  *  V  Q  K  L  R  E  Y  T  T  K  T  S  F  C  S  M  D  S  H  E  R  I  H  P  Y  A  T  I  H  S  W  R  N  G  S  F  I  G  L  G  I  A  D  V  E  K  F  R  D  D  A  C  E  N  N  K  S  S  A  S  T  K  D  S  L  P  Q  N  L  A  G  W  R  M  L  C  Q  V  S  P  I  L  C  V  V  G  I  P  N  G  S  R  Q  *  A  H  F  S  N  K  E   : E  K  H  T  S  R  *  *  I  R  Q  *  P  M  I  G  A  F  L  V  A  V  P  S  H  S  I  N  I  G  L  Q  T  L  *  G  A </second_frame>
            <third_frame>   C  E  M  A  I  G  L  *  E  H  *  N  H  L  K  A  P  E  N  F  L  Q  N  I  V  *  Q  K  S  Q  V  A  V  I  S  I  Y  V  Y  I  P  T  Q  K  F  W  T  M  M  K  D  A  H  K  V  A  T  N  D  Q  N  L  *  F  C  *  S  Q  I  S  K  P  T  G  L  S  I  P  R  Y  Q  Y  H  S  L  S  K  C  K  S  L  E  S  I  Q  P  K  P  P  S  A  Q  W  I  H  M  N  A  F  I  L  M  P  P  S  I  L  G  G  M  D  P  S  S  A  L  E  *  L  T  *  K  S  S  E  T  M  P  V  K  T  I  K  A  A  P  A  P  K  T  P  F  L  K  T  S  Q  D  G  G  C  C  A  K  *  V  L  Y  F  V  W  *  A  F  L  T  E  A  A  S  K  H  T  S  A  I  K  K  :  R  N  I  P  A  G  D  E  *  D  N  S  P  *  S  G  L  S  W  S  Q  C  P  P  T  A  *  T  S  A  C  K  H  Y  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86070" stop="86351"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQKLREYTTKTSFCSMDSHERIHPYATIHSWRNGSFIGLGIADVEKFRDDACENNKSSASTKDSLPQNLAGWRMLCQVSPILCVVGIPNGSRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="87260" PGL_stop="88068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87260" e_stop="88068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="87260" e_stop="88068" e_length="809"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87260" stop="88068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87261" stop="87631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282571" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACATGCTCGGACAACTTCTACTCCACTTGCATTTGATCAAGGACATCAACATTGGTTAACTCTCTTAGAGAGTAGACATACATATTGGGGTTGATTTAATACAGACCTAACAAAAGATTATAATCACCTCACCTTCCAACCACACGCACGGAGATTCAAGGGAAGAAGAGAGAACACCAAGCAAGATGTAATAATACCATGGATGAAGTTGATGCATAGTATCTTGAAAGGGAAGGTCCACATGTACTTGAGATCTCTGGCCACACTTTCTAATCCACTCACTTGTTTATATGGCGATGTGACTGAACAAGTTACTTTTCTAATTTGATTATCCAAATCTTAAAAGAGCATCAAGTTACTTGCGGAATATCAAAGCATCGAAACAACCTTTTTAAATCAACTGAATAAAGGATATAACTAGCACTCCTTCCAAGTTTATCCACACCCAAGAAGTTGGATAGGGAATTATCTCAGGTCAGACTTGCAAATCTATTCACGTGCTTATATAACAATGAGAATGGGAAAATAATGCTTCTAACTTAATATTTGATTGACATAACTAAAAGCATCTAAGTCACCAAGTCCTTTATTCAGGTAACAAAATTGACCTGATATCACGACAAGCTTCAGCATATGTAAACTAATCTGTAGATGTGACACTATGGCGATAGATGGTAATAAAAGCGAACAAGGTAGATCTATGAACAGATGGAGGAATTTGTAGGTATCAATGTGAACTTAGGCCTTAGCAAACATAATACATAATGGAAGCACGGATCCAATTTACCAACACTGGTCAGATTAAA</gDNA_template>
            <first_frame> L  T  C  S  D  N  F  Y  S  T  C  I  *  S  R  T  S  T  L  V  N  S  L  R  E  *  T  Y  I  L  G  L  I  *  Y  R  P  N  K  R  L  *  S  P  H  L  P  T  T  R  T  E  I  Q  G  K  K  R  E  H  Q  A  R  C  N  N  T  M  D  E  V  D  A  *  Y  L  E  R  E  G  P  H  V  L  E  I  S  G  H  T  F  *  S  T  H  L  F  I  W  R  C  D  *  T  S  Y  F  S  N  L  I  I  Q  I  L  K  E  H  Q  V  T  C  G  I  S  K  H  R  N  N  L  F  K  S  T  E  *  R  I  *  L  A  L  L  P  S  L  S  T  P  K  K  L  D  R  E  L  S  Q  V  R  L  A  N  L  F  T  C  L  Y  N  N  E  N  G  K  I  M  L  L  T  *  Y  L  I  D  I  T  K  S  I  *  V  T  K  S  F  I  Q  V  T  K  L  T  *  Y  H  D  K  L  Q  H  M  *  T  N  L  *  M  *  H  Y  G  D  R  W  *  *  K  R  T  R  *  I  Y  E  Q  M  E  E  F  V  G  I  N  V  N  L  G  L  S  K  H  N  T  *  W  K  H  G  S  N  L  P  T  L  V  R  L   </first_frame>
            <second_frame>  S  H  A  R  T  T  S  T  P  L  A  F  D  Q  G  H  Q  H  W  L  T  L  L  E  S  R  H  T  Y  W  G  *  F  N  T  D  L  T  K  D  Y  N  H  L  T  F  Q  P  H  A  R  R  F  K  G  R  R  E  N  T  K  Q  D  V  I  I  P  W  M  K  L  M  H  S  I  L  K  G  K  V  H  M  Y  L  R  S  L  A  T  L  S  N  P  L  T  C  L  Y  G  D  V  T  E  Q  V  T  F  L  I  *  L  S  K  S  *  K  S  I  K  L  L  A  E  Y  Q  S  I  E  T  T  F  L  N  Q  L  N  K  G  Y  N  *  H  S  F  Q  V  Y  P  H  P  R  S  W  I  G  N  Y  L  R  S  D  L  Q  I  Y  S  R  A  Y  I  T  M  R  M  G  K  *  C  F  *  L  N  I  *  L  T  *  L  K  A  S  K  S  P  S  P  L  F  R  *  Q  N  *  P  D  I  T  T  S  F  S  I  C  K  L  I  C  R  C  D  T  M  A  I  D  G  N  K  S  E  Q  G  R  S  M  N  R  W  R  N  L  *  V  S  M  *  T  *  A  L  A  N  I  I  H  N  G  S  T  D  P  I  Y  Q  H  W  S  D  *  </second_frame>
            <third_frame>   H  M  L  G  Q  L  L  L  H  L  H  L  I  K  D  I  N  I  G  *  L  S  *  R  V  D  I  H  I  G  V  D  L  I  Q  T  *  Q  K  I  I  I  T  S  P  S  N  H  T  H  G  D  S  R  E  E  E  R  T  P  S  K  M  *  *  Y  H  G  *  S  *  C  I  V  S  *  K  G  R  S  T  C  T  *  D  L  W  P  H  F  L  I  H  S  L  V  Y  M  A  M  *  L  N  K  L  L  F  *  F  D  Y  P  N  L  K  R  A  S  S  Y  L  R  N  I  K  A  S  K  Q  P  F  *  I  N  *  I  K  D  I  T  S  T  P  S  K  F  I  H  T  Q  E  V  G  *  G  I  I  S  G  Q  T  C  K  S  I  H  V  L  I  *  Q  *  E  W  E  N  N  A  S  N  L  I  F  D  *  H  N  *  K  H  L  S  H  Q  V  L  Y  S  G  N  K  I  D  L  I  S  R  Q  A  S  A  Y  V  N  *  S  V  D  V  T  L  W  R  *  M  V  I  K  A  N  K  V  D  L  *  T  D  G  G  I  C  R  Y  Q  C  E  L  R  P  *  Q  T  *  Y  I  M  E  A  R  I  Q  F  T  N  T  G  Q  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87357" stop="87590"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNTDLTKDYNHLTFQPHARRFKGRRENTKQDVIIPWMKLMHSILKGKVHMYLRSLATLSNPLTCLYGDVTEQVTFLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="91862" PGL_stop="89760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91862" e_stop="91760"/>
            <exon e_start="91655" e_stop="91499"/>
            <exon e_start="91414" e_stop="91301"/>
            <exon e_start="91175" e_stop="91080"/>
            <exon e_start="90987" e_stop="90916"/>
            <exon e_start="90833" e_stop="90551"/>
            <exon e_start="90433" e_stop="89760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.721" acc_prob="0.452" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="91862" e_stop="91760" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.721" acc_prob="0.452">
            <gDNA_intron_boundary i_start="91759" i_stop="91656" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91655" e_stop="91499" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.925">
            <gDNA_intron_boundary i_start="91498" i_stop="91415" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91414" e_stop="91301" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91300" i_stop="91176" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91175" e_stop="91080" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="91079" i_stop="90988" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90987" e_stop="90916" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.954" acc_prob="0.994">
            <gDNA_intron_boundary i_start="90915" i_stop="90834" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90833" e_stop="90551" e_length="283"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.977">
            <gDNA_intron_boundary i_start="90550" i_stop="90434" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90433" e_stop="89760" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91862" stop="91760"/>
              <exon start="91655" stop="91499"/>
              <exon start="91414" stop="91301"/>
              <exon start="91175" stop="91080"/>
              <exon start="90987" stop="90916"/>
              <exon start="90833" stop="90551"/>
              <exon start="90433" stop="90402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90666" stop="90551"/>
              <exon start="90433" stop="89760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAGGTTCTTCAAAGCACCATATATGATGTTGACCTTGATCGCATCCTTCAGAGTATTCACATTTACCTGCAAGAATTAGGAATGGAAGAGATCAGGAGGAG : AGCGGGAGCCGATGATAAACCTTTAAGAATGGTGAAAACTGTGCTGCATGAACTTGTCAAGCTTCGTGGTACTGCCATAAAAGGTCATCTGTCCATGGTGCCAATCGACATGCAACCACCTCCAATTATTCTTGCCTACATTGATCTTAACCTTCAG : ACCTTGGCCGCTGCAAGGATGTTGACTCCGTCTGTACCTGGCCAAACTCACTGGGGTGATTCTGCAGCAAATAATCCAGCACCAGCAACACATAATGCAGATGCTCAGTTGAAG : CAGGAACTTGCTGCCATATTTAAGAAGATTGGTGACAAGCAAACCTGCACAATTGGTCTTTATGAGTTATACCGGATCACACAATTGTATCCCAAG : GTTGATATATTTGCTCAGCTGCAAAATGCTAGTGAGGCATTCCGAACATATATTAGAGATGGTCTAGCCCAG : ATGGAAAAGAATGCTGCGGCTGGAAGGACTCCTTCTAGTGTACCCATGCCAACTCCTCCTCCGTCTTCACTAAACCTGTCTTCTCCCAAATTTGGTCCTTTATCTCCTGTAAATACCAACCCATTGAATGATGCAAAATCTGTAAACAATAAAATTGAACCATCACACTTTAGTTTGCCACCGTCGTATGGCGAAGATGATAGAGGTGGTAATGCTCTCCCCTCAAGAGGACTATCATCTGAACATTTGGAGTTGCAGAGAAATGATAGATTGCCTTCTGGAG : TTACTAGTGGAACACTAGAAGCGATCCGCGAAAGAATGAAAAGTATTTCATTAGCTACTACCGTGGGGAATGCGGACCCAAGTAATAGACCACTGATGTCCATGAATGGTAACATCAGTCACGTGGTGTCAAATCACGGTCCTGGCACTGAACATTCTAGTGTTGAAAATACCATTCAGAGTGGGGTTCTTCCCATGGATGAGAAGGCACTTTCAGGGCTCCAGGCACGAATGGAGAGGCTGAAGAGTGGATCTATGGAATTCTAGGTATTTTTTGGAGGCATTTCCCAGTGAACTTGCATTATAAGATGCTTTGTGTTTGCCGAGAAACACCTTGAACATTTATATTGCAGTCGTCAGCTCATGTCTGATTACAAGTGGAAAGAAAGGAAAGTTCGTCAAGTGTTGCCTGCCATCTCAATTTTATGGGACAGAATCTTTGTGTTCTTGAGATCTCGTAGATAATGTACCATAATGGTTTTTTTCCGGCAGGGTTAGCTGTATATTTTTGTAGAGATATCTACTGATTTGATTTGGTCTAATTTAATTGAGAGGCTCTCGTGTGTTTCGAAATCGTATGTCATGCCTCAATTGATAGCTAGATTCCGGCTAGATAGTTGAAACTGTTGTAAGCTGTATGATAGCTCTTCAATGTTGAAATCTTCCTATTTTCAC</gDNA_template>
            <first_frame> Y  R  F  F  K  A  P  Y  M  M  L  T  L  I  A  S  F  R  V  F  T  F  T  C  K  N  *  E  W  K  R  S  G  G   : E  R  E  P  M  I  N  L  *  E  W  *  K  L  C  C  M  N  L  S  S  F  V  V  L  P  *  K  V  I  C  P  W  C  Q  S  T  C  N  H  L  Q  L  F  L  P  T  L  I  L  T  F  R :   P  W  P  L  Q  G  C  *  L  R  L  Y  L  A  K  L  T  G  V  I  L  Q  Q  I  I  Q  H  Q  Q  H  I  M  Q  M  L  S  *  S :   R  N  L  L  P  Y  L  R  R  L  V  T  S  K  P  A  Q  L  V  F  M  S  Y  T  G  S  H  N  C  I  P  R :   L  I  Y  L  L  S  C  K  M  L  V  R  H  S  E  H  I  L  E  M  V  *  P  R :   W  K  R  M  L  R  L  E  G  L  L  L  V  Y  P  C  Q  L  L  L  R  L  H  *  T  C  L  L  P  N  L  V  L  Y  L  L  *  I  P  T  H  *  M  M  Q  N  L  *  T  I  K  L  N  H  H  T  L  V  C  H  R  R  M  A  K  M  I  E  V  V  M  L  S  P  Q  E  D  Y  H  L  N  I  W  S  C  R  E  M  I  D  C  L  L  E  :  L  L  V  E  H  *  K  R  S  A  K  E  *  K  V  F  H  *  L  L  P  W  G  M  R  T  Q  V  I  D  H  *  C  P  *  M  V  T  S  V  T  W  C  Q  I  T  V  L  A  L  N  I  L  V  L  K  I  P  F  R  V  G  F  F  P  W  M  R  R  H  F  Q  G  S  R  H  E  W  R  G  *  R  V  D  L  W  N  S  R  Y  F  L  E  A  F  P  S  E  L  A  L  *  D  A  L  C  L  P  R  N  T  L  N  I  Y  I  A  V  V  S  S  C  L  I  T  S  G  K  K  G  K  F  V  K  C  C  L  P  S  Q  F  Y  G  T  E  S  L  C  S  *  D  L  V  D  N  V  P  *  W  F  F  S  G  R  V  S  C  I  F  L  *  R  Y  L  L  I  *  F  G  L  I  *  L  R  G  S  R  V  F  R  N  R  M  S  C  L  N  *  *  L  D  S  G  *  I  V  E  T  V  V  S  C  M  I  A  L  Q  C  *  N  L  P  I  F   </first_frame>
            <second_frame>  I  G  S  S  K  H  H  I  *  C  *  P  *  S  H  P  S  E  Y  S  H  L  P  A  R  I  R  N  G  R  D  Q  E  E  :  S  G  S  R  *  *  T  F  K  N  G  E  N  C  A  A  *  T  C  Q  A  S  W  Y  C  H  K  R  S  S  V  H  G  A  N  R  H  A  T  T  S  N  Y  S  C  L  H  *  S  *  P  S   : D  L  G  R  C  K  D  V  D  S  V  C  T  W  P  N  S  L  G  *  F  C  S  K  *  S  S  T  S  N  T  *  C  R  C  S  V  E   : A  G  T  C  C  H  I  *  E  D  W  *  Q  A  N  L  H  N  W  S  L  *  V  I  P  D  H  T  I  V  S  Q   : G  *  Y  I  C  S  A  A  K  C  *  *  G  I  P  N  I  Y  *  R  W  S  S  P   : D  G  K  E  C  C  G  W  K  D  S  F  *  C  T  H  A  N  S  S  S  V  F  T  K  P  V  F  S  Q  I  W  S  F  I  S  C  K  Y  Q  P  I  E  *  C  K  I  C  K  Q  *  N  *  T  I  T  L  *  F  A  T  V  V  W  R  R  *  *  R  W  *  C  S  P  L  K  R  T  I  I  *  T  F  G  V  A  E  K  *  *  I  A  F  W  S :   Y  *  W  N  T  R  S  D  P  R  K  N  E  K  Y  F  I  S  Y  Y  R  G  E  C  G  P  K  *  *  T  T  D  V  H  E  W  *  H  Q  S  R  G  V  K  S  R  S  W  H  *  T  F  *  C  *  K  Y  H  S  E  W  G  S  S  H  G  *  E  G  T  F  R  A  P  G  T  N  G  E  A  E  E  W  I  Y  G  I  L  G  I  F  W  R  H  F  P  V  N  L  H  Y  K  M  L  C  V  C  R  E  T  P  *  T  F  I  L  Q  S  S  A  H  V  *  L  Q  V  E  R  K  E  S  S  S  S  V  A  C  H  L  N  F  M  G  Q  N  L  C  V  L  E  I  S  *  I  M  Y  H  N  G  F  F  P  A  G  L  A  V  Y  F  C  R  D  I  Y  *  F  D  L  V  *  F  N  *  E  A  L  V  C  F  E  I  V  C  H  A  S  I  D  S  *  I  P  A  R  *  L  K  L  L  *  A  V  *  *  L  F  N  V  E  I  F  L  F  S  </second_frame>
            <third_frame>   *  V  L  Q  S  T  I  Y  D  V  D  L  D  R  I  L  Q  S  I  H  I  Y  L  Q  E  L  G  M  E  E  I  R  R  R :   A  G  A  D  D  K  P  L  R  M  V  K  T  V  L  H  E  L  V  K  L  R  G  T  A  I  K  G  H  L  S  M  V  P  I  D  M  Q  P  P  P  I  I  L  A  Y  I  D  L  N  L  Q  :  T  L  A  A  A  R  M  L  T  P  S  V  P  G  Q  T  H  W  G  D  S  A  A  N  N  P  A  P  A  T  H  N  A  D  A  Q  L  K  :  Q  E  L  A  A  I  F  K  K  I  G  D  K  Q  T  C  T  I  G  L  Y  E  L  Y  R  I  T  Q  L  Y  P  K  :  V  D  I  F  A  Q  L  Q  N  A  S  E  A  F  R  T  Y  I  R  D  G  L  A  Q  :  M  E  K  N  A  A  A  G  R  T  P  S  S  V  P  M  P  T  P  P  P  S  S  L  N  L  S  S  P  K  F  G  P  L  S  P  V  N  T  N  P  L  N  D  A  K  S  V  N  N  K  I  E  P  S  H  F  S  L  P  P  S  Y  G  E  D  D  R  G  G  N  A  L  P  S  R  G  L  S  S  E  H  L  E  L  Q  R  N  D  R  L  P  S  G   : V  T  S  G  T  L  E  A  I  R  E  R  M  K  S  I  S  L  A  T  T  V  G  N  A  D  P  S  N  R  P  L  M  S  M  N  G  N  I  S  H  V  V  S  N  H  G  P  G  T  E  H  S  S  V  E  N  T  I  Q  S  G  V  L  P  M  D  E  K  A  L  S  G  L  Q  A  R  M  E  R  L  K  S  G  S  M  E  F  *  V  F  F  G  G  I  S  Q  *  T  C  I  I  R  C  F  V  F  A  E  K  H  L  E  H  L  Y  C  S  R  Q  L  M  S  D  Y  K  W  K  E  R  K  V  R  Q  V  L  P  A  I  S  I  L  W  D  R  I  F  V  F  L  R  S  R  R  *  C  T  I  M  V  F  F  R  Q  G  *  L  Y  I  F  V  E  I  S  T  D  L  I  W  S  N  L  I  E  R  L  S  C  V  S  K  S  Y  V  M  P  Q  L  I  A  R  F  R  L  D  S  *  N  C  C  K  L  Y  D  S  S  S  M  L  K  S  S  Y  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91857" stop="91760"/>
                    <exon start="91655" stop="91499"/>
                    <exon start="91414" stop="91301"/>
                    <exon start="91175" stop="91080"/>
                    <exon start="90987" stop="90916"/>
                    <exon start="90833" stop="90551"/>
                    <exon start="90433" stop="90168"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLQSTIYDVDLDRILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDMQPPPIILAYIDLNLQTLAAARMLTPSVPGQTHWGDSAANNPAPATHNADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMPTPPPSSLNLSSPKFGPLSPVNTNPLNDAKSVNNKIEPSHFSLPPSYGEDDRGGNALPSRGLSSEHLELQRNDRLPSGVTSGTLEAIRERMKSISLATTVGNADPSNRPLMSMNGNISHVVSNHGPGTEHSSVENTIQSGVLPMDEKALSGLQARMERLKSGSMEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="94347" PGL_stop="92254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94347" e_stop="94311"/>
            <exon e_start="93941" e_stop="93879"/>
            <exon e_start="93788" e_stop="93662"/>
            <exon e_start="92947" e_stop="92825"/>
            <exon e_start="92738" e_stop="92661"/>
            <exon e_start="92520" e_stop="92362"/>
            <exon e_start="92262" e_stop="92254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94347" e_stop="94311" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94310" i_stop="93942" i_length="369"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93941" e_stop="93879" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93878" i_stop="93789" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93788" e_stop="93662" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.966">
            <gDNA_intron_boundary i_start="93661" i_stop="92948" i_length="714"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92947" e_stop="92825" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.897">
            <gDNA_intron_boundary i_start="92824" i_stop="92739" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92738" e_stop="92661" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92660" i_stop="92521" i_length="140"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92520" e_stop="92362" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.929">
            <gDNA_intron_boundary i_start="92361" i_stop="92263" i_length="99"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92262" e_stop="92254" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94347" stop="94311"/>
              <exon start="93941" stop="93879"/>
              <exon start="93788" stop="93662"/>
              <exon start="92947" stop="92825"/>
              <exon start="92738" stop="92661"/>
              <exon start="92520" stop="92362"/>
              <exon start="92262" stop="92254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGGGCTGCTTTAAGGCGTTCAGTGAGGGATAACGG : GACTGATCTGGCAGAGCCGAGCGGTGAAGTTTCACGGTCGACAGCTGGCCCAATCTTAAATAG : GGATATATATAACAATACAGAGCTTCCCATGGAAAGAAATGTGAATCTACGGCCAGTTGCCGGTACAATTGGTCCATCAGACTGGAATGAAGCTCTTGATATTATATCATATGATTCTCCCGAGCAG : TCTGTTGAAGGAATGAAAGTTGTGTGCCATTTGTTGGCCCTAGCAACCAATGATCCTGAAGGCAGTGCCATGGATGAAATTGTCAAAGATGCAGATAGGCTTGTTTCCTGCTTAGCAAATAAG : GTAGCAAAAACTTTTGACTTCAGTCTGATGGGTGCATCTTCAAGATCTTGCAAATATGTTCTTAACACACTCATGCAG : ACATTTCAGAATAAAACGCTTTCTCATGCTGTAAAGGAGCGTACCCTAGATATCCTCATTACTGAACTTTTGCTTTGGCTTCTTGATGAGAGAGTACCCCGCATGGATGATGGCAGTCAGCTCTTGAAAGCGTTGAATGTTCTGATGCTAAAAATCTTG : GACAATGCT</gDNA_template>
            <first_frame> L  G  L  L  *  G  V  Q  *  G  I  T   : G  L  I  W  Q  S  R  A  V  K  F  H  G  R  Q  L  A  Q  S  *  I   : G  I  Y  I  T  I  Q  S  F  P  W  K  E  M  *  I  Y  G  Q  L  P  V  Q  L  V  H  Q  T  G  M  K  L  L  I  L  Y  H  M  I  L  P  S  S :   L  L  K  E  *  K  L  C  A  I  C  W  P  *  Q  P  M  I  L  K  A  V  P  W  M  K  L  S  K  M  Q  I  G  L  F  P  A  *  Q  I  R :   *  Q  K  L  L  T  S  V  *  W  V  H  L  Q  D  L  A  N  M  F  L  T  H  S  C  R :   H  F  R  I  K  R  F  L  M  L  *  R  S  V  P  *  I  S  S  L  L  N  F  C  F  G  F  L  M  R  E  Y  P  A  W  M  M  A  V  S  S  *  K  R  *  M  F  *  C  *  K  S  W :   T  M   </first_frame>
            <second_frame>  *  G  C  F  K  A  F  S  E  G  *  R  :  D  *  S  G  R  A  E  R  *  S  F  T  V  D  S  W  P  N  L  K  *  :  G  Y  I  *  Q  Y  R  A  S  H  G  K  K  C  E  S  T  A  S  C  R  Y  N  W  S  I  R  L  E  *  S  S  *  Y  Y  I  I  *  F  S  R  A   : V  C  *  R  N  E  S  C  V  P  F  V  G  P  S  N  Q  *  S  *  R  Q  C  H  G  *  N  C  Q  R  C  R  *  A  C  F  L  L  S  K  *   : G  S  K  N  F  *  L  Q  S  D  G  C  I  F  K  I  L  Q  I  C  S  *  H  T  H  A   : D  I  S  E  *  N  A  F  S  C  C  K  G  A  Y  P  R  Y  P  H  Y  *  T  F  A  L  A  S  *  *  E  S  T  P  H  G  *  W  Q  S  A  L  E  S  V  E  C  S  D  A  K  N  L   : G  Q  C  </second_frame>
            <third_frame>   R  A  A  L  R  R  S  V  R  D  N  G :   T  D  L  A  E  P  S  G  E  V  S  R  S  T  A  G  P  I  L  N  R :   D  I  Y  N  N  T  E  L  P  M  E  R  N  V  N  L  R  P  V  A  G  T  I  G  P  S  D  W  N  E  A  L  D  I  I  S  Y  D  S  P  E  Q  :  S  V  E  G  M  K  V  V  C  H  L  L  A  L  A  T  N  D  P  E  G  S  A  M  D  E  I  V  K  D  A  D  R  L  V  S  C  L  A  N  K  :  V  A  K  T  F  D  F  S  L  M  G  A  S  S  R  S  C  K  Y  V  L  N  T  L  M  Q  :  T  F  Q  N  K  T  L  S  H  A  V  K  E  R  T  L  D  I  L  I  T  E  L  L  L  W  L  L  D  E  R  V  P  R  M  D  D  G  S  Q  L  L  K  A  L  N  V  L  M  L  K  I  L  :  D  N  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94345" stop="94311"/>
                    <exon start="93941" stop="93879"/>
                    <exon start="93788" stop="93662"/>
                    <exon start="92947" stop="92825"/>
                    <exon start="92738" stop="92661"/>
                    <exon start="92520" stop="92362"/>
                    <exon start="92262" stop="92254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAALRRSVRDNGTDLAEPSGEVSRSTAGPILNRDIYNNTELPMERNVNLRPVAGTIGPSDWNEALDIISYDSPEQSVEGMKVVCHLLALATNDPEGSAMDEIVKDADRLVSCLANKVAKTFDFSLMGASSRSCKYVLNTLMQTFQNKTLSHAVKERTLDILITELLLWLLDERVPRMDDGSQLLKALNVLMLKILDNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="128771" PGL_stop="130076"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128771" e_stop="129140"/>
            <exon e_start="129764" e_stop="130076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128771" e_stop="129140" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="129141" i_stop="129763" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="129764" e_stop="130076" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128771" stop="129140"/>
              <exon start="129764" stop="130076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128772" stop="129140"/>
              <exon start="129764" stop="129851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128805" stop="129140"/>
              <exon start="129764" stop="129864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCTTCCATTCTATTTCCCACTACCAATACTCTCTCTTCTTCAACTACCAACACTTTTTCCAACTTGCATTCTTCTCCTTTCTTTGCAAAAACATCAAAAATTTCCTCCATTAGAAAGCATAATGTCCATCGTAATTTCCAGGTATCTTGCAAAACCATAGATGATAATAATCACGAACACAACTCACCCGTCGACATTTCTAAAAAGAACGATTCTTCAAACAATATGATCGATAGAAGAAACGTTCTACTTGGATTAGGAGGTTTATATGGTGCTTCTACTCTTGTTGGTGGTCTTCCCTTCGTCCTTGCCGCTCCGGTGAACGGACCCGACGTTACCAAATGTGGGGCCGCAGACTTGCCACCAG : GTGCAGAACTGGTTAATTGTTGTCCTCCGATGAGCGGAAGTATCATCGACTTCCAGCTTCCGTCGTCATCCACCCCACTCCGTACACGGCCAGCAGCTCATTCCGTGGATAGTGCCTACATTGAGAAATTCAACAGAGCTATTCAGCTGATGAAGCAACTTCCTGACGACGATCCACGTAGCTTCAAACAACAAGCAAATATTCACTGTGCTTATTGTGATGGTGCTTATGATCAATTAGGGTTCCCAAATTCAGAGCTCCAAGTTCATTCCTCTTGGATTTTTCTTCCATTTCATCGTTGTTATCTCTATTT</gDNA_template>
            <first_frame> M  S  S  I  L  F  P  T  T  N  T  L  S  S  S  T  T  N  T  F  S  N  L  H  S  S  P  F  F  A  K  T  S  K  I  S  S  I  R  K  H  N  V  H  R  N  F  Q  V  S  C  K  T  I  D  D  N  N  H  E  H  N  S  P  V  D  I  S  K  K  N  D  S  S  N  N  M  I  D  R  R  N  V  L  L  G  L  G  G  L  Y  G  A  S  T  L  V  G  G  L  P  F  V  L  A  A  P  V  N  G  P  D  V  T  K  C  G  A  A  D  L  P  P   : G  A  E  L  V  N  C  C  P  P  M  S  G  S  I  I  D  F  Q  L  P  S  S  S  T  P  L  R  T  R  P  A  A  H  S  V  D  S  A  Y  I  E  K  F  N  R  A  I  Q  L  M  K  Q  L  P  D  D  D  P  R  S  F  K  Q  Q  A  N  I  H  C  A  Y  C  D  G  A  Y  D  Q  L  G  F  P  N  S  E  L  Q  V  H  S  S  W  I  F  L  P  F  H  R  C  Y  L  Y   </first_frame>
            <second_frame>  C  L  P  F  Y  F  P  L  P  I  L  S  L  L  Q  L  P  T  L  F  P  T  C  I  L  L  L  S  L  Q  K  H  Q  K  F  P  P  L  E  S  I  M  S  I  V  I  S  R  Y  L  A  K  P  *  M  I  I  I  T  N  T  T  H  P  S  T  F  L  K  R  T  I  L  Q  T  I  *  S  I  E  E  T  F  Y  L  D  *  E  V  Y  M  V  L  L  L  L  L  V  V  F  P  S  S  L  P  L  R  *  T  D  P  T  L  P  N  V  G  P  Q  T  C  H  Q  :  V  Q  N  W  L  I  V  V  L  R  *  A  E  V  S  S  T  S  S  F  R  R  H  P  P  H  S  V  H  G  Q  Q  L  I  P  W  I  V  P  T  L  R  N  S  T  E  L  F  S  *  *  S  N  F  L  T  T  I  H  V  A  S  N  N  K  Q  I  F  T  V  L  I  V  M  V  L  M  I  N  *  G  S  Q  I  Q  S  S  K  F  I  P  L  G  F  F  F  H  F  I  V  V  I  S  I  </second_frame>
            <third_frame>   V  F  H  S  I  S  H  Y  Q  Y  S  L  F  F  N  Y  Q  H  F  F  Q  L  A  F  F  S  F  L  C  K  N  I  K  N  F  L  H  *  K  A  *  C  P  S  *  F  P  G  I  L  Q  N  H  R  *  *  *  S  R  T  Q  L  T  R  R  H  F  *  K  E  R  F  F  K  Q  Y  D  R  *  K  K  R  S  T  W  I  R  R  F  I  W  C  F  Y  S  C  W  W  S  S  L  R  P  C  R  S  G  E  R  T  R  R  Y  Q  M  W  G  R  R  L  A  T  R :   C  R  T  G  *  L  L  S  S  D  E  R  K  Y  H  R  L  P  A  S  V  V  I  H  P  T  P  Y  T  A  S  S  S  F  R  G  *  C  L  H  *  E  I  Q  Q  S  Y  S  A  D  E  A  T  S  *  R  R  S  T  *  L  Q  T  T  S  K  Y  S  L  C  L  L  *  W  C  L  *  S  I  R  V  P  K  F  R  A  P  S  S  F  L  L  D  F  S  S  I  S  S  L  L  S  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128771" stop="129140"/>
                    <exon start="129764" stop="130074"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSSILFPTTNTLSSSTTNTFSNLHSSPFFAKTSKISSIRKHNVHRNFQVSCKTIDDNNHEHNSPVDISKKNDSSNNMIDRRNVLLGLGGLYGASTLVGGLPFVLAAPVNGPDVTKCGAADLPPGAELVNCCPPMSGSIIDFQLPSSSTPLRTRPAAHSVDSAYIEKFNRAIQLMKQLPDDDPRSFKQQANIHCAYCDGAYDQLGFPNSELQVHSSWIFLPFHRCYLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="130751" PGL_stop="133271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130751" e_stop="131541"/>
            <exon e_start="132215" e_stop="132223"/>
            <exon e_start="133236" e_stop="133267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-intron don_prob="0.494" acc_prob="0.931" e_score="0.778"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="130751" e_stop="131541" e_length="791"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131542" i_stop="132214" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="0.778">
            <gDNA_exon_boundary e_start="132215" e_stop="132223" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.494" acc_prob="0.931">
            <gDNA_intron_boundary i_start="132224" i_stop="133235" i_length="1012"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="133236" e_stop="133267" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130751" stop="131541"/>
              <exon start="132215" stop="132223"/>
              <exon start="133236" stop="133267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130931" stop="131540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTGAGTAGCGTAAGGAGGCTCGTTGAAGCCAGAGCAGCTGATGACAATAATAATAATATTATGAATTTTCCTAGACCAAAAGAAATATTTCCTACGAAACTTGACCATGTTATAAAAGTTATGGTAAAAAGGCCAAACAAGAAGAAGAGGAACAAAAAGGAGAAAAACGAGAGAGAGGAGATTTTAATTGTTGAAGGACTAGAAGTGGAGAGTGATGTGTTTGTTAAGTTTGATGTTTTGATCAATGACGAAGATGAAACACTGATTTCACCAGATAATGCTGAGTTTGCTGGAAGTTTTGTGAACGTACCACATCATAGTCATGGTAAAGGTGAGAAAAATTCGAAACGAAAAACGAAGCTAAAATTAGCGATAACTGAGTTGTTGGAGGATTTGGATGCTGAAAATGATGATAATGTGTTGGTGACTTTTGTACCCAAGAATGGTTCTGGTGCTGTTAAAATTGGGGGTGTTAAGATTGTGCTTGAGGATTAGAAGGAAAAAAAAAAGAACAAGTCATTTTAATTAAATCAAAATAATATAAGCATTTCTTGATGTATTTTCTTTTAATTAATATCCTACTGTTTCTGATTAATGTTGCATTTGGACAATGTAACTTGTGTAGACATGATGTTTGCATGGAATAAAGGAAGGAAAAGTAGTTGGATATATTTTTACGTAATTATTTTGTCTCATTTTGACTGAGAAAAAAAAGAGAGAGAGGAATTATATATTGTGTAAAATTTCTTGTATGACTTTGAAATAAAATGTATTCTCAGTTTCATTTTA : AAAAAGGAA : CAAATGTTTGCAAAAAATTGCCAGGCGTCTCT</gDNA_template>
            <first_frame> R  *  V  A  *  G  G  S  L  K  P  E  Q  L  M  T  I  I  I  I  L  *  I  F  L  D  Q  K  K  Y  F  L  R  N  L  T  M  L  *  K  L  W  *  K  G  Q  T  R  R  R  G  T  K  R  R  K  T  R  E  R  R  F  *  L  L  K  D  *  K  W  R  V  M  C  L  L  S  L  M  F  *  S  M  T  K  M  K  H  *  F  H  Q  I  M  L  S  L  L  E  V  L  *  T  Y  H  I  I  V  M  V  K  V  R  K  I  R  N  E  K  R  S  *  N  *  R  *  L  S  C  W  R  I  W  M  L  K  M  M  I  M  C  W  *  L  L  Y  P  R  M  V  L  V  L  L  K  L  G  V  L  R  L  C  L  R  I  R  R  K  K  K  R  T  S  H  F  N  *  I  K  I  I  *  A  F  L  D  V  F  S  F  N  *  Y  P  T  V  S  D  *  C  C  I  W  T  M  *  L  V  *  T  *  C  L  H  G  I  K  E  G  K  V  V  G  Y  I  F  T  *  L  F  C  L  I  L  T  E  K  K  K  R  E  R  N  Y  I  L  C  K  I  S  C  M  T  L  K  *  N  V  F  S  V  S  F  * :   K  R  N :   K  C  L  Q  K  I  A  R  R  L  </first_frame>
            <second_frame>  V  E  *  R  K  E  A  R  *  S  Q  S  S  *  *  Q  *  *  *  Y  Y  E  F  S  *  T  K  R  N  I  S  Y  E  T  *  P  C  Y  K  S  Y  G  K  K  A  K  Q  E  E  E  E  Q  K  G  E  K  R  E  R  G  D  F  N  C  *  R  T  R  S  G  E  *  C  V  C  *  V  *  C  F  D  Q  *  R  R  *  N  T  D  F  T  R  *  C  *  V  C  W  K  F  C  E  R  T  T  S  *  S  W  *  R  *  E  K  F  E  T  K  N  E  A  K  I  S  D  N  *  V  V  G  G  F  G  C  *  K  *  *  *  C  V  G  D  F  C  T  Q  E  W  F  W  C  C  *  N  W  G  C  *  D  C  A  *  G  L  E  G  K  K  K  E  Q  V  I  L  I  K  S  K  *  Y  K  H  F  L  M  Y  F  L  L  I  N  I  L  L  F  L  I  N  V  A  F  G  Q  C  N  L  C  R  H  D  V  C  M  E  *  R  K  E  K  *  L  D  I  F  L  R  N  Y  F  V  S  F  *  L  R  K  K  R  E  R  G  I  I  Y  C  V  K  F  L  V  *  L  *  N  K  M  Y  S  Q  F  H  F   : K  K  G   : T  N  V  C  K  K  L  P  G  V  S </second_frame>
            <third_frame>   L  S  S  V  R  R  L  V  E  A  R  A  A  D  D  N  N  N  N  I  M  N  F  P  R  P  K  E  I  F  P  T  K  L  D  H  V  I  K  V  M  V  K  R  P  N  K  K  K  R  N  K  K  E  K  N  E  R  E  E  I  L  I  V  E  G  L  E  V  E  S  D  V  F  V  K  F  D  V  L  I  N  D  E  D  E  T  L  I  S  P  D  N  A  E  F  A  G  S  F  V  N  V  P  H  H  S  H  G  K  G  E  K  N  S  K  R  K  T  K  L  K  L  A  I  T  E  L  L  E  D  L  D  A  E  N  D  D  N  V  L  V  T  F  V  P  K  N  G  S  G  A  V  K  I  G  G  V  K  I  V  L  E  D  *  K  E  K  K  K  N  K  S  F  *  L  N  Q  N  N  I  S  I  S  *  C  I  F  F  *  L  I  S  Y  C  F  *  L  M  L  H  L  D  N  V  T  C  V  D  M  M  F  A  W  N  K  G  R  K  S  S  W  I  Y  F  Y  V  I  I  L  S  H  F  D  *  E  K  K  E  R  E  E  L  Y  I  V  *  N  F  L  Y  D  F  E  I  K  C  I  L  S  F  I  L  :  K  K  E  :  Q  M  F  A  K  N  C  Q  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130753" stop="131247"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSVRRLVEARAADDNNNNIMNFPRPKEIFPTKLDHVIKVMVKRPNKKKRNKKEKNEREEILIVEGLEVESDVFVKFDVLINDEDETLISPDNAEFAGSFVNVPHHSHGKGEKNSKRKTKLKLAITELLEDLDAENDDNVLVTFVPKNGSGAVKIGGVKIVLED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="130931" e_stop="131541"/>
            <exon e_start="133236" e_stop="133271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.931" e_score="0.977"/>
          <exon-only e_score="0.528"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="130931" e_stop="131541" e_length="611"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="131542" i_stop="133235" i_length="1694"/>
          </intron>
          <exon e_serial="2" e_score="0.528">
            <gDNA_exon_boundary e_start="133236" e_stop="133271" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130931" stop="131540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130984" stop="131541"/>
              <exon start="133236" stop="133271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391510" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTTTAATTGTTGAAGGACTAGAAGTGGAGAGTGATGTGTTTGTTAAGTTTGATGTTTTGATCAATGACGAAGATGAAACACTGATTTCACCAGATAATGCTGAGTTTGCTGGAAGTTTTGTGAACGTACCACATCATAGTCATGGTAAAGGTGAGAAAAATTCGAAACGAAAAACGAAGCTAAAATTAGCGATAACTGAGTTGTTGGAGGATTTGGATGCTGAAAATGATGATAATGTGTTGGTGACTTTTGTACCCAAGAATGGTTCTGGTGCTGTTAAAATTGGGGGTGTTAAGATTGTGCTTGAGGATTAGAAGGAAAAAAAAAAGAACAAGTCATTTTAATTAAATCAAAATAATATAAGCATTTCTTGATGTATTTTCTTTTAATTAATATCCTACTGTTTCTGATTAATGTTGCATTTGGACAATGTAACTTGTGTAGACATGATGTTTGCATGGAATAAAGGAAGGAAAAGTAGTTGGATATATTTTTACGTAATTATTTTGTCTCATTTTGACTGAGAAAAAAAAGAGAGAGAGGAATTATATATTGTGTAAAATTTCTTGTATGACTTTGAAATAAAATGTATTCTCAGTTTCATTTTA : CAAATGTTTGCAAAAAATTGCCAGGCGTCTCTTTAT</gDNA_template>
            <first_frame> R  F  *  L  L  K  D  *  K  W  R  V  M  C  L  L  S  L  M  F  *  S  M  T  K  M  K  H  *  F  H  Q  I  M  L  S  L  L  E  V  L  *  T  Y  H  I  I  V  M  V  K  V  R  K  I  R  N  E  K  R  S  *  N  *  R  *  L  S  C  W  R  I  W  M  L  K  M  M  I  M  C  W  *  L  L  Y  P  R  M  V  L  V  L  L  K  L  G  V  L  R  L  C  L  R  I  R  R  K  K  K  R  T  S  H  F  N  *  I  K  I  I  *  A  F  L  D  V  F  S  F  N  *  Y  P  T  V  S  D  *  C  C  I  W  T  M  *  L  V  *  T  *  C  L  H  G  I  K  E  G  K  V  V  G  Y  I  F  T  *  L  F  C  L  I  L  T  E  K  K  K  R  E  R  N  Y  I  L  C  K  I  S  C  M  T  L  K  *  N  V  F  S  V  S  F  Y :   K  C  L  Q  K  I  A  R  R  L  F   </first_frame>
            <second_frame>  D  F  N  C  *  R  T  R  S  G  E  *  C  V  C  *  V  *  C  F  D  Q  *  R  R  *  N  T  D  F  T  R  *  C  *  V  C  W  K  F  C  E  R  T  T  S  *  S  W  *  R  *  E  K  F  E  T  K  N  E  A  K  I  S  D  N  *  V  V  G  G  F  G  C  *  K  *  *  *  C  V  G  D  F  C  T  Q  E  W  F  W  C  C  *  N  W  G  C  *  D  C  A  *  G  L  E  G  K  K  K  E  Q  V  I  L  I  K  S  K  *  Y  K  H  F  L  M  Y  F  L  L  I  N  I  L  L  F  L  I  N  V  A  F  G  Q  C  N  L  C  R  H  D  V  C  M  E  *  R  K  E  K  *  L  D  I  F  L  R  N  Y  F  V  S  F  *  L  R  K  K  R  E  R  G  I  I  Y  C  V  K  F  L  V  *  L  *  N  K  M  Y  S  Q  F  H  F   : T  N  V  C  K  K  L  P  G  V  S  L  </second_frame>
            <third_frame>   I  L  I  V  E  G  L  E  V  E  S  D  V  F  V  K  F  D  V  L  I  N  D  E  D  E  T  L  I  S  P  D  N  A  E  F  A  G  S  F  V  N  V  P  H  H  S  H  G  K  G  E  K  N  S  K  R  K  T  K  L  K  L  A  I  T  E  L  L  E  D  L  D  A  E  N  D  D  N  V  L  V  T  F  V  P  K  N  G  S  G  A  V  K  I  G  G  V  K  I  V  L  E  D  *  K  E  K  K  K  N  K  S  F  *  L  N  Q  N  N  I  S  I  S  *  C  I  F  F  *  L  I  S  Y  C  F  *  L  M  L  H  L  D  N  V  T  C  V  D  M  M  F  A  W  N  K  G  R  K  S  S  W  I  Y  F  Y  V  I  I  L  S  H  F  D  *  E  K  K  E  R  E  E  L  Y  I  V  *  N  F  L  Y  D  F  E  I  K  C  I  L  S  F  I  L  :  Q  M  F  A  K  N  C  Q  A  S  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130933" stop="131247"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIVEGLEVESDVFVKFDVLINDEDETLISPDNAEFAGSFVNVPHHSHGKGEKNSKRKTKLKLAITELLEDLDAENDDNVLVTFVPKNGSGAVKIGGVKIVLED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="131836" PGL_stop="130984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131836" e_stop="131799"/>
            <exon e_start="131538" e_stop="130984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.526"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.526">
            <gDNA_exon_boundary e_start="131836" e_stop="131799" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131798" i_stop="131539" i_length="260"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131538" e_stop="130984" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131836" stop="131799"/>
              <exon start="131538" stop="130984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGTAATTTTTTCAATATAAAATTAATTATTTTATAA : AATGAAACTGAGAATACATTTTATTTCAAAGTCATACAAGAAATTTTACACAATATATAATTCCTCTCTCTCTTTTTTTTCTCAGTCAAAATGAGACAAAATAATTACGTAAAAATATATCCAACTACTTTTCCTTCCTTTATTCCATGCAAACATCATGTCTACACAAGTTACATTGTCCAAATGCAACATTAATCAGAAACAGTAGGATATTAATTAAAAGAAAATACATCAAGAAATGCTTATATTATTTTGATTTAATTAAAATGACTTGTTCTTTTTTTTTTCCTTCTAATCCTCAAGCACAATCTTAACACCCCCAATTTTAACAGCACCAGAACCATTCTTGGGTACAAAAGTCACCAACACATTATCATCATTTTCAGCATCCAAATCCTCCAACAACTCAGTTATCGCTAATTTTAGCTTCGTTTTTCGTTTCGAATTTTTCTCACCTTTACCATGACTATGATGTGGTACGTTCACAAAACTTCCAGCAAACTCAGCATTATCTGGTGAAATCAGTGTTTCATCTTCGTCATTGATCAAAACATC</gDNA_template>
            <first_frame> T  V  I  F  S  I  *  N  *  L  F  Y  K :   M  K  L  R  I  H  F  I  S  K  S  Y  K  K  F  Y  T  I  Y  N  S  S  L  S  F  F  S  Q  S  K  *  D  K  I  I  T  *  K  Y  I  Q  L  L  F  L  P  L  F  H  A  N  I  M  S  T  Q  V  T  L  S  K  C  N  I  N  Q  K  Q  *  D  I  N  *  K  K  I  H  Q  E  M  L  I  L  F  *  F  N  *  N  D  L  F  F  F  F  S  F  *  S  S  S  T  I  L  T  P  P  I  L  T  A  P  E  P  F  L  G  T  K  V  T  N  T  L  S  S  F  S  A  S  K  S  S  N  N  S  V  I  A  N  F  S  F  V  F  R  F  E  F  F  S  P  L  P  *  L  *  C  G  T  F  T  K  L  P  A  N  S  A  L  S  G  E  I  S  V  S  S  S  S  L  I  K  T   </first_frame>
            <second_frame>  R  *  F  F  Q  Y  K  I  N  Y  F  I   : K  *  N  *  E  Y  I  L  F  Q  S  H  T  R  N  F  T  Q  Y  I  I  P  L  S  L  F  F  L  S  Q  N  E  T  K  *  L  R  K  N  I  S  N  Y  F  S  F  L  Y  S  M  Q  T  S  C  L  H  K  L  H  C  P  N  A  T  L  I  R  N  S  R  I  L  I  K  R  K  Y  I  K  K  C  L  Y  Y  F  D  L  I  K  M  T  C  S  F  F  F  P  S  N  P  Q  A  Q  S  *  H  P  Q  F  *  Q  H  Q  N  H  S  W  V  Q  K  S  P  T  H  Y  H  H  F  Q  H  P  N  P  P  T  T  Q  L  S  L  I  L  A  S  F  F  V  S  N  F  S  H  L  Y  H  D  Y  D  V  V  R  S  Q  N  F  Q  Q  T  Q  H  Y  L  V  K  S  V  F  H  L  R  H  *  S  K  H  </second_frame>
            <third_frame>   G  N  F  F  N  I  K  L  I  I  L  *  :  N  E  T  E  N  T  F  Y  F  K  V  I  Q  E  I  L  H  N  I  *  F  L  S  L  F  F  F  S  V  K  M  R  Q  N  N  Y  V  K  I  Y  P  T  T  F  P  S  F  I  P  C  K  H  H  V  Y  T  S  Y  I  V  Q  M  Q  H  *  S  E  T  V  G  Y  *  L  K  E  N  T  S  R  N  A  Y  I  I  L  I  *  L  K  *  L  V  L  F  F  F  L  L  I  L  K  H  N  L  N  T  P  N  F  N  S  T  R  T  I  L  G  Y  K  S  H  Q  H  I  I  I  I  F  S  I  Q  I  L  Q  Q  L  S  Y  R  *  F  *  L  R  F  S  F  R  I  F  L  T  F  T  M  T  M  M  W  Y  V  H  K  T  S  S  K  L  S  I  I  W  *  N  Q  C  F  I  F  V  I  D  Q  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131209" stop="130994"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHQNHSWVQKSPTHYHHFQHPNPPTTQLSLILASFFVSNFSHLYHDYDVVRSQNFQQTQHYLVKSVFHLRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131434" stop="131225"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRKNISNYFSFLYSMQTSCLHKLHCPNATLIRNSRILIKRKYIKKCLYYFDLIKMTCSFFFPSNPQAQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="137227" PGL_stop="136463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137227" e_stop="136463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="137227" e_stop="136463" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137227" stop="136463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAGAATACAAAGGCATCATACTCTCCACCTCGTCTTCTGCCACTCAGGGTTCAAGCAGTTGGCAAGCTGAATCCTATTGATGTAAAGCGTCTCTCTTTTCATATGTTTCCAAATGTAGCAGCTCAAGATTCAAATTTTGTTGTTCAATTAACAAGCACAGTTAATGAACAAAAGTCAGATGTAGAAGCGGAGAAAGATTCTCAAGTGAAAACCAAAGATGATGAGGAGTTTGGACAAGATTGTGAAATGACAGACTCACCAGATATTCTACCGACTAGTATGGATGCTCAACCAGAAAATGAAGGAACATGTAAAACTGGTGTCAAAAATAATCTACCAGTGTCAGGACATGTTACCTTGGATGTGCTTTTACCTCCTTCACTTCCAGAACAAGGAGCAGGGCAACAATCACCACTCACTTTGTCGTTGAATGTCATAGACTCGCAAAAACCAACATCTACTCTGCAAATTTCTTTACTCACACCAGATGGAGATATATCATTGAACCAACCATCGACTTTTGCACCAGCAGCACCACAACCACCACCCCCACCTCCACCAGTACCCAATTCATCAGGGAATGCAGAAGGGTCAAGGCCTGCTCCATTGTTAGCAAAACCAAGTGGTGTTCCACAGCCTCCTCCTCCTCCTCCTCCACCTCCCATGGCATCAGCCAATGTAGCAACACCACAACATCCTATGAAACCAATATCTGCACTCCCACCACCACCACCACCACCTCCTCCCATGACAAGAAAAGAA</gDNA_template>
            <first_frame> K  K  N  T  K  A  S  Y  S  P  P  R  L  L  P  L  R  V  Q  A  V  G  K  L  N  P  I  D  V  K  R  L  S  F  H  M  F  P  N  V  A  A  Q  D  S  N  F  V  V  Q  L  T  S  T  V  N  E  Q  K  S  D  V  E  A  E  K  D  S  Q  V  K  T  K  D  D  E  E  F  G  Q  D  C  E  M  T  D  S  P  D  I  L  P  T  S  M  D  A  Q  P  E  N  E  G  T  C  K  T  G  V  K  N  N  L  P  V  S  G  H  V  T  L  D  V  L  L  P  P  S  L  P  E  Q  G  A  G  Q  Q  S  P  L  T  L  S  L  N  V  I  D  S  Q  K  P  T  S  T  L  Q  I  S  L  L  T  P  D  G  D  I  S  L  N  Q  P  S  T  F  A  P  A  A  P  Q  P  P  P  P  P  P  P  V  P  N  S  S  G  N  A  E  G  S  R  P  A  P  L  L  A  K  P  S  G  V  P  Q  P  P  P  P  P  P  P  P  P  M  A  S  A  N  V  A  T  P  Q  H  P  M  K  P  I  S  A  L  P  P  P  P  P  P  P  P  P  M  T  R  K  E </first_frame>
            <second_frame>  R  R  I  Q  R  H  H  T  L  H  L  V  F  C  H  S  G  F  K  Q  L  A  S  *  I  L  L  M  *  S  V  S  L  F  I  C  F  Q  M  *  Q  L  K  I  Q  I  L  L  F  N  *  Q  A  Q  L  M  N  K  S  Q  M  *  K  R  R  K  I  L  K  *  K  P  K  M  M  R  S  L  D  K  I  V  K  *  Q  T  H  Q  I  F  Y  R  L  V  W  M  L  N  Q  K  M  K  E  H  V  K  L  V  S  K  I  I  Y  Q  C  Q  D  M  L  P  W  M  C  F  Y  L  L  H  F  Q  N  K  E  Q  G  N  N  H  H  S  L  C  R  *  M  S  *  T  R  K  N  Q  H  L  L  C  K  F  L  Y  S  H  Q  M  E  I  Y  H  *  T  N  H  R  L  L  H  Q  Q  H  H  N  H  H  P  H  L  H  Q  Y  P  I  H  Q  G  M  Q  K  G  Q  G  L  L  H  C  *  Q  N  Q  V  V  F  H  S  L  L  L  L  L  L  H  L  P  W  H  Q  P  M  *  Q  H  H  N  I  L  *  N  Q  Y  L  H  S  H  H  H  H  H  H  L  L  P  *  Q  E  K   </second_frame>
            <third_frame>   E  E  Y  K  G  I  I  L  S  T  S  S  S  A  T  Q  G  S  S  S  W  Q  A  E  S  Y  *  C  K  A  S  L  F  S  Y  V  S  K  C  S  S  S  R  F  K  F  C  C  S  I  N  K  H  S  *  *  T  K  V  R  C  R  S  G  E  R  F  S  S  E  N  Q  R  *  *  G  V  W  T  R  L  *  N  D  R  L  T  R  Y  S  T  D  *  Y  G  C  S  T  R  K  *  R  N  M  *  N  W  C  Q  K  *  S  T  S  V  R  T  C  Y  L  G  C  A  F  T  S  F  T  S  R  T  R  S  R  A  T  I  T  T  H  F  V  V  E  C  H  R  L  A  K  T  N  I  Y  S  A  N  F  F  T  H  T  R  W  R  Y  I  I  E  P  T  I  D  F  C  T  S  S  T  T  T  T  T  P  T  S  T  S  T  Q  F  I  R  E  C  R  R  V  K  A  C  S  I  V  S  K  T  K  W  C  S  T  A  S  S  S  S  S  S  T  S  H  G  I  S  Q  C  S  N  T  T  T  S  Y  E  T  N  I  C  T  P  T  T  T  T  T  T  S  S  H  D  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137227" stop="136463"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNTKASYSPPRLLPLRVQAVGKLNPIDVKRLSFHMFPNVAAQDSNFVVQLTSTVNEQKSDVEAEKDSQVKTKDDEEFGQDCEMTDSPDILPTSMDAQPENEGTCKTGVKNNLPVSGHVTLDVLLPPSLPEQGAGQQSPLTLSLNVIDSQKPTSTLQISLLTPDGDISLNQPSTFAPAAPQPPPPPPPVPNSSGNAEGSRPAPLLAKPSGVPQPPPPPPPPPMASANVATPQHPMKPISALPPPPPPPPPMTRKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="139391" PGL_stop="137616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139391" e_stop="138994"/>
            <exon e_start="138324" e_stop="138103"/>
            <exon e_start="137885" e_stop="137790"/>
            <exon e_start="137691" e_stop="137616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.869"/>
          <exon-intron don_prob="0.982" acc_prob="0.926" e_score="0.995"/>
          <exon-intron don_prob="0.983" acc_prob="0.487" e_score="0.990"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.869">
            <gDNA_exon_boundary e_start="139391" e_stop="138994" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="138993" i_stop="138325" i_length="669"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="138324" e_stop="138103" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.926">
            <gDNA_intron_boundary i_start="138102" i_stop="137886" i_length="217"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="137885" e_stop="137790" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.487">
            <gDNA_intron_boundary i_start="137789" i_stop="137692" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="137691" e_stop="137616" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139391" stop="138994"/>
              <exon start="138324" stop="138103"/>
              <exon start="137885" stop="137790"/>
              <exon start="137691" stop="137616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139389" stop="138994"/>
              <exon start="138324" stop="138103"/>
              <exon start="137885" stop="137830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAATTATTCCTATTTTGCTCTGCACGTTATATGAGTCTTCTTTAATTTATCAATTTTCCTACAACTATTATTACTACATTATTTTTTAATCAATCCAACAAACAAAACATTATAATTTTTTTATTTTTTTTTAATAATAAAAATAATATTGAATGCTCTTGTTCTTCTTCCTCCTCCTCCAACATTCTTCTAATAATTTCTATTATTTTATTGTTTTCATTCACCGTTTTTTTGCGTCAGCAGATAATATTGTCAAAGTTGACCTGGTAAAATCATTTTTGTGTTTTTTTTCAATATTGTATAAAACTTGGTATTTCTCATTAGAAATGGCCATTGGAGCATGCTTTGGTGTGCCTCCTTTCTTTTCACGCAGGAAGCATACTACAACCTATCAG : GAAGAAGAGATGAAAGAGACAAAGAGAAGTCCTGTTGTTGAAAAGAAGAAAACACCTCCCATAGCAGTATCAAAAAGTTTTAAATCCAAAGGTTCCACGGTTCGTAATTCATCTAGAGTAGCAGGGAACTTCATAATAATGACTGAGCTTCGGAACAAGATCCTTACCTTGAGAGACTTGCTCGACTTGTCCCCTTGTATTGGCTCTGCATCTGTAAATGAG : CTGCTGCTTTTGACGCTGAAAGACCTGCAACAACTGTATCCTACAATGAATCCATCTATTTCTTTGTCAAAAATTGATGAAGCACCGATGCAGCAG : GCACTGCAATTCTTCTTTGATACTCTGATATCAATTGGGGAAATGTGGACAGGCAATGATGAGTGGATGGTCAAAT</gDNA_template>
            <first_frame> I  K  L  F  L  F  C  S  A  R  Y  M  S  L  L  *  F  I  N  F  P  T  T  I  I  T  T  L  F  F  N  Q  S  N  K  Q  N  I  I  I  F  L  F  F  F  N  N  K  N  N  I  E  C  S  C  S  S  S  S  S  S  N  I  L  L  I  I  S  I  I  L  L  F  S  F  T  V  F  L  R  Q  Q  I  I  L  S  K  L  T  W  *  N  H  F  C  V  F  F  Q  Y  C  I  K  L  G  I  S  H  *  K  W  P  L  E  H  A  L  V  C  L  L  S  F  H  A  G  S  I  L  Q  P  I  R :   K  K  R  *  K  R  Q  R  E  V  L  L  L  K  R  R  K  H  L  P  *  Q  Y  Q  K  V  L  N  P  K  V  P  R  F  V  I  H  L  E  *  Q  G  T  S  *  *  *  L  S  F  G  T  R  S  L  P  *  E  T  C  S  T  C  P  L  V  L  A  L  H  L  *  M  S :   C  C  F  *  R  *  K  T  C  N  N  C  I  L  Q  *  I  H  L  F  L  C  Q  K  L  M  K  H  R  C  S  R :   H  C  N  S  S  L  I  L  *  Y  Q  L  G  K  C  G  Q  A  M  M  S  G  W  S  N </first_frame>
            <second_frame>  L  N  Y  S  Y  F  A  L  H  V  I  *  V  F  F  N  L  S  I  F  L  Q  L  L  L  L  H  Y  F  L  I  N  P  T  N  K  T  L  *  F  F  Y  F  F  L  I  I  K  I  I  L  N  A  L  V  L  L  P  P  P  P  T  F  F  *  *  F  L  L  F  Y  C  F  H  S  P  F  F  C  V  S  R  *  Y  C  Q  S  *  P  G  K  I  I  F  V  F  F  F  N  I  V  *  N  L  V  F  L  I  R  N  G  H  W  S  M  L  W  C  A  S  F  L  F  T  Q  E  A  Y  Y  N  L  S   : G  R  R  D  E  R  D  K  E  K  S  C  C  *  K  E  E  N  T  S  H  S  S  I  K  K  F  *  I  Q  R  F  H  G  S  *  F  I  *  S  S  R  E  L  H  N  N  D  *  A  S  E  Q  D  P  Y  L  E  R  L  A  R  L  V  P  L  Y  W  L  C  I  C  K  *   : A  A  A  F  D  A  E  R  P  A  T  T  V  S  Y  N  E  S  I  Y  F  F  V  K  N  *  *  S  T  D  A  A   : G  T  A  I  L  L  *  Y  S  D  I  N  W  G  N  V  D  R  Q  *  *  V  D  G  Q   </second_frame>
            <third_frame>   *  I  I  P  I  L  L  C  T  L  Y  E  S  S  L  I  Y  Q  F  S  Y  N  Y  Y  Y  Y  I  I  F  *  S  I  Q  Q  T  K  H  Y  N  F  F  I  F  F  *  *  *  K  *  Y  *  M  L  L  F  F  F  L  L  L  Q  H  S  S  N  N  F  Y  Y  F  I  V  F  I  H  R  F  F  A  S  A  D  N  I  V  K  V  D  L  V  K  S  F  L  C  F  F  S  I  L  Y  K  T  W  Y  F  S  L  E  M  A  I  G  A  C  F  G  V  P  P  F  F  S  R  R  K  H  T  T  T  Y  Q  :  E  E  E  M  K  E  T  K  R  S  P  V  V  E  K  K  K  T  P  P  I  A  V  S  K  S  F  K  S  K  G  S  T  V  R  N  S  S  R  V  A  G  N  F  I  I  M  T  E  L  R  N  K  I  L  T  L  R  D  L  L  D  L  S  P  C  I  G  S  A  S  V  N  E  :  L  L  L  L  T  L  K  D  L  Q  Q  L  Y  P  T  M  N  P  S  I  S  L  S  K  I  D  E  A  P  M  Q  Q  :  A  L  Q  F  F  F  D  T  L  I  S  I  G  E  M  W  T  G  N  D  E  W  M  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139236" stop="138994"/>
                    <exon start="138324" stop="138103"/>
                    <exon start="137885" stop="137790"/>
                    <exon start="137691" stop="137617"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLFFFLLLQHSSNNFYYFIVFIHRFFASADNIVKVDLVKSFLCFFSILYKTWYFSLEMAIGACFGVPPFFSRRKHTTTYQEEEMKETKRSPVVEKKKTPPIAVSKSFKSKGSTVRNSSRVAGNFIIMTELRNKILTLRDLLDLSPCIGSASVNELLLLTLKDLQQLYPTMNPSISLSKIDEAPMQQALQFFFDTLISIGEMWTGNDEWMVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="143013" PGL_stop="141410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143013" e_stop="142050"/>
            <exon e_start="141955" e_stop="141410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.999"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="143013" e_stop="142050" e_length="964"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="142049" i_stop="141956" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="141955" e_stop="141410" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143013" stop="142272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143012" stop="142512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142305" stop="142050"/>
              <exon start="141955" stop="141416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142200" stop="142050"/>
              <exon start="141955" stop="141412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141938" stop="141410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141938" stop="141410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141937" stop="141521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGCCAAGTATGAATGGGACCAGTGACCAGCTACCTTTGGACTTCCAGGATGAAGGCTATGGGATCAAGAATTCTGGTGAGAAGGTCAGAAGAGACCATCTGACACCTGATGATTCTCTTATGAGCAAAAATCATGAAGATAATGGCACAAAGGTTAACATGGTAGATTTTGCCAATGGTGAGGATATGAGGCCAAGTTTGAAGAAAGGAGTTTCTGAAGATGTGCATCTTCTATTTTCGCACAAAGAACCATCAGGAGGCAATACATTGGGAACTCCATCTGATTTTGGTTCTGAATCCTCTGCTATTAGAAATAGTAATGGGGAAGATTGGTTTGTTGTCAACCACTCCGGCAGTTCAGAAACTCAAGAGACTAGGCGAATGATATTTGACAATGACAGTAGCATGTCAACTCAGAAAAGTTCCTCTCAAGTCGAAAGTGAAAGAGCTGCTCCTATTGATGATTCTTTCATGGTACAGTCTCGACCAGCTTTTGATGATCAATATGGTTCTCAGTGGAAAACAGACATTGGCATGGATGCAGACTTGGTTGCTGCAGCAAATGCTGAAAATAGTGATCCAGTTGCATCAAAAACCAAGCTTAGTACATATGGGACCAGTCAACCTGATGACCTCTGTGTGGTGCTGGCAAGAGAAACTAGTTTGGATCCTCTTGAGGCATCTTGGCAACCAGAATTGGATTTTCAGATTGAAGCTTCTTTCATTCAAGTTGATAAAAAATCTTCTGCAGTTGAGGCAAAACCTCCTCCTACTGAAGAAACTGTTCCTGTGAAAGGTAAAAGCACAACTAAGAAGGACAGTCTTGCAAAGACCGGAAAAGATGCAAGGTCTAAAGTCTCCCCAGGATCTCTGTCAAGGAGCAGGATTGATGCTTTAGCAAAGAGCAAGAAGATGTCTCCTCCTACTAACAAACTGACAACCCAGAAGAGCAAATTAGATCGG : GACGAAGAAATGCGCAAGAGAATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTAAAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAAGTATGATCCGACCTTAAAATATATTTGATTGCTTTGCCGCGAATATGGAACATCCACAATTCACTGCTTTGTGCACATTGGATTATCCACAAATATATCTTGGAGAAATAAAATATTTTCGATGAAAATTATAGATTTTTTTCTTTACTAGGACAGCTCTGCTTGCTGGCTTGATGCAAGTTATTCCTTCTCATTTATTTAGACATTCATGTCCCATCATAAGGTTTTGCCAGTATAGTTGCTTGAGGCTTTATTATTATTTGTATATTGCTATTTGTTCATATGTTGTGTAAAGTTATATTTAAATCTACCTGTGAGTTAAAACTTCTAATACCAAAT</gDNA_template>
            <first_frame> G  A  K  Y  E  W  D  Q  *  P  A  T  F  G  L  P  G  *  R  L  W  D  Q  E  F  W  *  E  G  Q  K  R  P  S  D  T  *  *  F  S  Y  E  Q  K  S  *  R  *  W  H  K  G  *  H  G  R  F  C  Q  W  *  G  Y  E  A  K  F  E  E  R  S  F  *  R  C  A  S  S  I  F  A  Q  R  T  I  R  R  Q  Y  I  G  N  S  I  *  F  W  F  *  I  L  C  Y  *  K  *  *  W  G  R  L  V  C  C  Q  P  L  R  Q  F  R  N  S  R  D  *  A  N  D  I  *  Q  *  Q  *  H  V  N  S  E  K  F  L  S  S  R  K  *  K  S  C  S  Y  *  *  F  F  H  G  T  V  S  T  S  F  *  *  S  I  W  F  S  V  E  N  R  H  W  H  G  C  R  L  G  C  C  S  K  C  *  K  *  *  S  S  C  I  K  N  Q  A  *  Y  I  W  D  Q  S  T  *  *  P  L  C  G  A  G  K  R  N  *  F  G  S  S  *  G  I  L  A  T  R  I  G  F  S  D  *  S  F  F  H  S  S  *  *  K  I  F  C  S  *  G  K  T  S  S  Y  *  R  N  C  S  C  E  R  *  K  H  N  *  E  G  Q  S  C  K  D  R  K  R  C  K  V  *  S  L  P  R  I  S  V  K  E  Q  D  *  C  F  S  K  E  Q  E  D  V  S  S  Y  *  Q  T  D  N  P  E  E  Q  I  R  S   : G  R  R  N  A  Q  E  N  G  R  I  S  D  R  E  A  K  E  D  C  R  K  K  C  S  *  G  F  V  P  S  S  F  Q  E  R  A  S  R  K  *  N  S  F  K  D  L  T  F  I  Q  T  S  H  I  S  S  A  G  Q  A  L  R  S  N  P  S  R  K  S  M  I  R  P  *  N  I  F  D  C  F  A  A  N  M  E  H  P  Q  F  T  A  L  C  T  L  D  Y  P  Q  I  Y  L  G  E  I  K  Y  F  R  *  K  L  *  I  F  F  F  T  R  T  A  L  L  A  G  L  M  Q  V  I  P  S  H  L  F  R  H  S  C  P  I  I  R  F  C  Q  Y  S  C  L  R  L  Y  Y  Y  L  Y  I  A  I  C  S  Y  V  V  *  S  Y  I  *  I  Y  L  *  V  K  T  S  N  T  K  </first_frame>
            <second_frame>  E  P  S  M  N  G  T  S  D  Q  L  P  L  D  F  Q  D  E  G  Y  G  I  K  N  S  G  E  K  V  R  R  D  H  L  T  P  D  D  S  L  M  S  K  N  H  E  D  N  G  T  K  V  N  M  V  D  F  A  N  G  E  D  M  R  P  S  L  K  K  G  V  S  E  D  V  H  L  L  F  S  H  K  E  P  S  G  G  N  T  L  G  T  P  S  D  F  G  S  E  S  S  A  I  R  N  S  N  G  E  D  W  F  V  V  N  H  S  G  S  S  E  T  Q  E  T  R  R  M  I  F  D  N  D  S  S  M  S  T  Q  K  S  S  S  Q  V  E  S  E  R  A  A  P  I  D  D  S  F  M  V  Q  S  R  P  A  F  D  D  Q  Y  G  S  Q  W  K  T  D  I  G  M  D  A  D  L  V  A  A  A  N  A  E  N  S  D  P  V  A  S  K  T  K  L  S  T  Y  G  T  S  Q  P  D  D  L  C  V  V  L  A  R  E  T  S  L  D  P  L  E  A  S  W  Q  P  E  L  D  F  Q  I  E  A  S  F  I  Q  V  D  K  K  S  S  A  V  E  A  K  P  P  P  T  E  E  T  V  P  V  K  G  K  S  T  T  K  K  D  S  L  A  K  T  G  K  D  A  R  S  K  V  S  P  G  S  L  S  R  S  R  I  D  A  L  A  K  S  K  K  M  S  P  P  T  N  K  L  T  T  Q  K  S  K  L  D  R  :  D  E  E  M  R  K  R  M  E  E  L  V  I  E  R  Q  K  R  I  A  E  R  S  A  A  K  G  S  S  P  A  A  S  K  K  G  P  A  G  S  K  T  A  S  K  I  S  P  S  S  K  L  H  T  F  P  V  Q  V  K  H  *  G  A  I  H  Q  G  K  V  *  S  D  L  K  I  Y  L  I  A  L  P  R  I  W  N  I  H  N  S  L  L  C  A  H  W  I  I  H  K  Y  I  L  E  K  *  N  I  F  D  E  N  Y  R  F  F  S  L  L  G  Q  L  C  L  L  A  *  C  K  L  F  L  L  I  Y  L  D  I  H  V  P  S  *  G  F  A  S  I  V  A  *  G  F  I  I  I  C  I  L  L  F  V  H  M  L  C  K  V  I  F  K  S  T  C  E  L  K  L  L  I  P  N </second_frame>
            <third_frame>   S  Q  V  *  M  G  P  V  T  S  Y  L  W  T  S  R  M  K  A  M  G  S  R  I  L  V  R  R  S  E  E  T  I  *  H  L  M  I  L  L  *  A  K  I  M  K  I  M  A  Q  R  L  T  W  *  I  L  P  M  V  R  I  *  G  Q  V  *  R  K  E  F  L  K  M  C  I  F  Y  F  R  T  K  N  H  Q  E  A  I  H  W  E  L  H  L  I  L  V  L  N  P  L  L  L  E  I  V  M  G  K  I  G  L  L  S  T  T  P  A  V  Q  K  L  K  R  L  G  E  *  Y  L  T  M  T  V  A  C  Q  L  R  K  V  P  L  K  S  K  V  K  E  L  L  L  L  M  I  L  S  W  Y  S  L  D  Q  L  L  M  I  N  M  V  L  S  G  K  Q  T  L  A  W  M  Q  T  W  L  L  Q  Q  M  L  K  I  V  I  Q  L  H  Q  K  P  S  L  V  H  M  G  P  V  N  L  M  T  S  V  W  C  W  Q  E  K  L  V  W  I  L  L  R  H  L  G  N  Q  N  W  I  F  R  L  K  L  L  S  F  K  L  I  K  N  L  L  Q  L  R  Q  N  L  L  L  L  K  K  L  F  L  *  K  V  K  A  Q  L  R  R  T  V  L  Q  R  P  E  K  M  Q  G  L  K  S  P  Q  D  L  C  Q  G  A  G  L  M  L  *  Q  R  A  R  R  C  L  L  L  L  T  N  *  Q  P  R  R  A  N  *  I  G :   T  K  K  C  A  R  E  W  K  N  *  *  S  R  G  K  R  G  L  Q  K  E  V  Q  L  R  V  R  P  Q  Q  L  P  R  K  G  Q  Q  E  V  K  Q  L  Q  R  S  H  L  H  P  N  F  T  H  F  Q  C  R  S  S  I  K  E  Q  S  I  K  E  K  Y  D  P  T  L  K  Y  I  *  L  L  C  R  E  Y  G  T  S  T  I  H  C  F  V  H  I  G  L  S  T  N  I  S  W  R  N  K  I  F  S  M  K  I  I  D  F  F  L  Y  *  D  S  S  A  C  W  L  D  A  S  Y  S  F  S  F  I  *  T  F  M  S  H  H  K  V  L  P  V  *  L  L  E  A  L  L  L  F  V  Y  C  Y  L  F  I  C  C  V  K  L  Y  L  N  L  P  V  S  *  N  F  *  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143012" stop="142050"/>
                    <exon start="141955" stop="141770"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPSMNGTSDQLPLDFQDEGYGIKNSGEKVRRDHLTPDDSLMSKNHEDNGTKVNMVDFANGEDMRPSLKKGVSEDVHLLFSHKEPSGGNTLGTPSDFGSESSAIRNSNGEDWFVVNHSGSSETQETRRMIFDNDSSMSTQKSSSQVESERAAPIDDSFMVQSRPAFDDQYGSQWKTDIGMDADLVAAANAENSDPVASKTKLSTYGTSQPDDLCVVLARETSLDPLEASWQPELDFQIEASFIQVDKKSSAVEAKPPPTEETVPVKGKSTTKKDSLAKTGKDARSKVSPGSLSRSRIDALAKSKKMSPPTNKLTTQKSKLDRDEEMRKRMEELVIERQKRIAERSAAKGSSPAASKKGPAGSKTASKISPSSKLHTFPVQVKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="143573" PGL_stop="143243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143573" e_stop="143243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="143573" e_stop="143243" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143573" stop="143243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143553" stop="143338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACAAAATGTAAATGGCTCCACAAATGGTTCTGTTAGGGACTCTCACAAACGCTCAAAGAAGAAGGAGAAATCCAAAGAACATAACAGTTCAGAAGATGATGAACAGACTGAGTCGAGTGCCTCTGATTCTGGAACTGATTCAGATGAAGTTAGGAAGCATGAGAAAAAGCATTCTTCAAGGGAGAACTCACATGCTAAAAAGCACAAGAAGAAATCCTCAAAAAGAGTTGTAATCCGCAACATCAATTATATCACTTCCAATAGAAAGAATGAGGAAAATGATGGATCTTCTTATGATTCATCTTCAGCTGAATCTCATTTACTCGATG</gDNA_template>
            <first_frame> P  Q  N  V  N  G  S  T  N  G  S  V  R  D  S  H  K  R  S  K  K  K  E  K  S  K  E  H  N  S  S  E  D  D  E  Q  T  E  S  S  A  S  D  S  G  T  D  S  D  E  V  R  K  H  E  K  K  H  S  S  R  E  N  S  H  A  K  K  H  K  K  K  S  S  K  R  V  V  I  R  N  I  N  Y  I  T  S  N  R  K  N  E  E  N  D  G  S  S  Y  D  S  S  S  A  E  S  H  L  L  D  </first_frame>
            <second_frame>  H  K  M  *  M  A  P  Q  M  V  L  L  G  T  L  T  N  A  Q  R  R  R  R  N  P  K  N  I  T  V  Q  K  M  M  N  R  L  S  R  V  P  L  I  L  E  L  I  Q  M  K  L  G  S  M  R  K  S  I  L  Q  G  R  T  H  M  L  K  S  T  R  R  N  P  Q  K  E  L  *  S  A  T  S  I  I  S  L  P  I  E  R  M  R  K  M  M  D  L  L  M  I  H  L  Q  L  N  L  I  Y  S  M </second_frame>
            <third_frame>   T  K  C  K  W  L  H  K  W  F  C  *  G  L  S  Q  T  L  K  E  E  G  E  I  Q  R  T  *  Q  F  R  R  *  *  T  D  *  V  E  C  L  *  F  W  N  *  F  R  *  S  *  E  A  *  E  K  A  F  F  K  G  E  L  T  C  *  K  A  Q  E  E  I  L  K  K  S  C  N  P  Q  H  Q  L  Y  H  F  Q  *  K  E  *  G  K  *  W  I  F  L  *  F  I  F  S  *  I  S  F  T  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143573" stop="143244"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQNVNGSTNGSVRDSHKRSKKKEKSKEHNSSEDDEQTESSASDSGTDSDEVRKHEKKHSSRENSHAKKHKKKSSKRVVIRNINYITSNRKNEENDGSSYDSSSAESHLLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="146437" PGL_stop="144097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146437" e_stop="146177"/>
            <exon e_start="146038" e_stop="145862"/>
            <exon e_start="145470" e_stop="145349"/>
            <exon e_start="145193" e_stop="145141"/>
            <exon e_start="145047" e_stop="144995"/>
            <exon e_start="144904" e_stop="144752"/>
            <exon e_start="144240" e_stop="144106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.832" acc_prob="0.941" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="146437" e_stop="146177" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.832" acc_prob="0.941">
            <gDNA_intron_boundary i_start="146176" i_stop="146039" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146038" e_stop="145862" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="145470" e_stop="145349" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="145193" e_stop="145141" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="145047" e_stop="144995" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144904" e_stop="144752" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="0.895" acc_prob="0.999">
            <gDNA_intron_boundary i_start="144751" i_stop="144241" i_length="511"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="144240" e_stop="144106" e_length="135"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146437" stop="146177"/>
              <exon start="146038" stop="145862"/>
              <exon start="145470" stop="145349"/>
              <exon start="145193" stop="145141"/>
              <exon start="145047" stop="144995"/>
              <exon start="144904" stop="144767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146424" stop="146177"/>
              <exon start="146038" stop="145862"/>
              <exon start="145470" stop="145366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146422" stop="146177"/>
              <exon start="146038" stop="145862"/>
              <exon start="145470" stop="145349"/>
              <exon start="145193" stop="145141"/>
              <exon start="145047" stop="144995"/>
              <exon start="144904" stop="144752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146421" stop="146177"/>
              <exon start="146038" stop="145862"/>
              <exon start="145470" stop="145349"/>
              <exon start="145193" stop="145141"/>
              <exon start="145047" stop="144995"/>
              <exon start="144904" stop="144752"/>
              <exon start="144240" stop="144201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146413" stop="146177"/>
              <exon start="146038" stop="145945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146369" stop="146177"/>
              <exon start="146038" stop="145862"/>
              <exon start="145470" stop="145349"/>
              <exon start="145193" stop="145141"/>
              <exon start="145047" stop="144995"/>
              <exon start="144904" stop="144892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146177"/>
              <exon start="146038" stop="145862"/>
              <exon start="145470" stop="145349"/>
              <exon start="145193" stop="145141"/>
              <exon start="145047" stop="144995"/>
              <exon start="144904" stop="144752"/>
              <exon start="144240" stop="144106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTCCATGTGCAATTCTTGCCATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAG : ATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAG : ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAG : GAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAG : GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAA : GATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGTACGTCTTAG : GGATGCATGTGTAGATTTCAAGGAACTTTACAAACAAAAGCACACAGATGGACAATGGATGGATGAGGTAGCTGCAATGAAGGCATGTACACCAATGGATCTATCGTACTTGGGAAATCAAGGTGTTATTCTTGC</gDNA_template>
            <first_frame> I  S  P  C  A  I  L  A  I  A  S  S  F  L  A  G  N  F  S  S  I  Y  S  S  T  K  R  F  L  K  C  H  V  L  E  H  V  F  V  L  Y  N  H  F  F  C  Y  L  S  F  I  F  S  P  F  S  P  L  C  P  L  S  F  A  L  V  K  H  G  F  Q  D  P  S  *  L  C  T  V  S  A  H  P  N  *  N  K  :  M  *  S  C  G  V  F  W  G  *  K  *  E  I  G  I  W  V  G  G  T  I  H  F  S  L  E  I  C  *  R  S  D  S  K  R  W  V  F  N  H  Y  E  A  T  F  N  S  C  L  L  V  H  Q  S  H  I  P  K  :  I  C  T  L  C  *  Y  T  *  N  S  *  E  V  Y  A  I  G  T  R  D  L  T  D  R  E  F  H  S  I  Q  *  M  L  Q  W  Q  F  R  G  R :   K  L  T  S  *  *  *  E  H  Q  E  I  K  R  F  V  Q   : G  K  I  *  S  *  R  S  *  *  C  C  T  *  R  K  L  Q  :  D  S  P  S  T  P  P  G  Y  P  K  G  I  T  *  E  R  A  G  H  G  L  C  A  C  N  R  C  R  L  *  D  R  P  I  G  *  S  H  T  V  C  *  F  F  W  C  S  T  S  *  :  G  C  M  C  R  F  Q  G  T  L  Q  T  K  A  H  R  W  T  M  D  G  *  G  S  C  N  E  G  M  Y  T  N  G  S  I  V  L  G  K  S  R  C  Y  S  C </first_frame>
            <second_frame>  S  L  H  V  Q  F  L  P  L  L  H  H  F  L  L  A  I  F  L  P  F  T  V  Q  Q  K  D  F  S  N  V  T  F  L  N  M  S  L  F  F  T  T  I  S  F  A  I  *  V  S  F  F  H  H  F  L  P  F  V  H  *  A  L  L  *  L  N  M  D  S  K  T  L  L  D  Y  A  L  F  Q  L  T  P  T  R  T  R :   C  D  L  V  V  F  S  G  G  K  N  E  K  L  A  S  G  L  V  E  P  F  I  S  H  L  K  F  A  K  D  Q  I  P  K  G  G  Y  S  I  T  M  R  P  P  S  T  H  A  Y  W  F  T  K  A  T  F  L  R :   F  V  R  F  V  S  T  P  E  I  L  E  R  F  M  R  L  E  R  E  I  S  Q  I  E  S  S  I  Q  S  N  E  C  S  N  G  N  S  E  E   : G  S  S  P  A  N  S  E  S  T  R  K  S  N  D  S  F  K  :  A  K  S  E  V  E  E  A  N  N  A  A  P  K  E  N  S  K :   I  H  L  Q  R  H  L  D  T  R  K  A  L  L  R  K  E  Q  A  M  A  Y  A  R  A  T  V  A  G  F  E  I  D  Q  L  D  D  L  I  Q  F  A  N  S  F  G  A  V  R  L  R :   D  A  C  V  D  F  K  E  L  Y  K  Q  K  H  T  D  G  Q  W  M  D  E  V  A  A  M  K  A  C  T  P  M  D  L  S  Y  L  G  N  Q  G  V  I  L   </second_frame>
            <third_frame>   L  S  M  C  N  S  C  H  C  F  I  I  S  C  W  Q  F  F  F  H  L  Q  F  N  K  K  I  S  Q  M  S  R  S  *  T  C  L  C  S  L  Q  P  F  L  L  L  F  E  F  H  F  F  T  I  F  S  P  L  S  T  K  L  C  F  S  *  T  W  I  P  R  P  F  L  I  M  H  C  F  S  S  P  Q  L  E  Q   : D  V  I  L  W  C  F  L  G  V  K  M  R  N  W  H  L  G  W  W  N  H  S  F  L  T  *  N  L  L  K  I  R  F  Q  K  V  G  I  Q  S  L  *  G  H  L  Q  L  M  P  T  G  S  P  K  P  H  S  *   : D  L  Y  A  L  L  V  H  L  K  F  L  R  G  L  C  D  W  N  E  R  S  H  R  S  R  V  P  F  N  P  M  N  A  P  M  A  I  Q  R  K  :  E  A  H  Q  L  I  V  R  A  P  G  N  Q  T  I  R  S  R :   Q  N  L  K  L  K  K  L  I  M  L  H  L  K  K  T  P   : R  F  T  F  N  A  T  W  I  P  E  R  H  Y  L  G  K  S  R  P  W  L  M  R  V  Q  P  L  Q  A  L  R  *  T  N  W  M  I  S  Y  S  L  L  I  L  L  V  Q  Y  V  L   : G  M  H  V  *  I  S  R  N  F  T  N  K  S  T  Q  M  D  N  G  W  M  R  *  L  Q  *  R  H  V  H  Q  W  I  Y  R  T  W  E  I  K  V  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146241" stop="146177"/>
                    <exon start="146038" stop="145862"/>
                    <exon start="145470" stop="145349"/>
                    <exon start="145193" stop="145141"/>
                    <exon start="145047" stop="144995"/>
                    <exon start="144904" stop="144752"/>
                    <exon start="144240" stop="144108"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNMDSKTLLDYALFQLTPTRTRCDLVVFSGGKNEKLASGLVEPFISHLKFAKDQIPKGGYSITMRPPSTHAYWFTKATFLRFVRFVSTPEILERFMRLEREISQIESSIQSNECSNGNSEEGSSPANSESTRKSNDSFKAKSEVEEANNAAPKENSKIHLQRHLDTRKALLRKEQAMAYARATVAGFEIDQLDDLIQFANSFGAVRLRDACVDFKELYKQKHTDGQWMDEVAAMKACTPMDLSYLGNQGVIL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146437" stop="146213"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPCAILAIASSFLAGNFSSIYSSTKRFLKCHVLEHVFVLYNHFFCYLSFIFSPFSPLCPLSFALVKHGFQDPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="146388" e_stop="145862"/>
            <exon e_start="145470" e_stop="145349"/>
            <exon e_start="145193" e_stop="145141"/>
            <exon e_start="145047" e_stop="144995"/>
            <exon e_start="144904" e_stop="144752"/>
            <exon e_start="144240" e_stop="144097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="146388" e_stop="145862" e_length="527"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="145861" i_stop="145471" i_length="391"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="145470" e_stop="145349" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="145348" i_stop="145194" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="145193" e_stop="145141" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="145140" i_stop="145048" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="145047" e_stop="144995" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="144994" i_stop="144905" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="144904" e_stop="144752" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.895" acc_prob="0.999">
            <gDNA_intron_boundary i_start="144751" i_stop="144241" i_length="511"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144240" e_stop="144097" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146388" stop="145862"/>
              <exon start="145470" stop="145349"/>
              <exon start="145193" stop="145141"/>
              <exon start="145047" stop="144995"/>
              <exon start="144904" stop="144893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146045" stop="145862"/>
              <exon start="145470" stop="145349"/>
              <exon start="145193" stop="145141"/>
              <exon start="145047" stop="144995"/>
              <exon start="144904" stop="144752"/>
              <exon start="144240" stop="144097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGGTTGGTTTTGCTTTAAACACCCCCCCCCCCCCTCTCCACACAAAGTTTGTGTTAACTGTTTTTTTAGCTTTGTATTGTGATGGAAACTGATAAAGATTTGATTTTTTGTGTGTTTTTGATTTGTGGGTATTGAAAAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAG : ATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAG : GAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAG : GCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAA : GATTCACCTTCAACGCCACCTGGATACCCGAAAGGCATTACTTAGGAAAGAGCAGGCCATGGCTTATGCGCGTGCAACCGTTGCAGGCTTTGAGATAGACCAATTGGATGATCTCATACAGTTTGCTAATTCTTTTGGTGCAGTACGTCTTAG : GGATGCATGTGTAGATTTCAAGGAACTTTACAAACAAAAGCACACAGATGGACAATGGATGGATGAGGTAGCTGCAATGAAGGCATGTACACCAATGGATCTATCGTACTTGGGAAATCAAGGTGTTATTCTTGCATATGACAA</gDNA_template>
            <first_frame> I  F  L  P  F  T  V  Q  Q  K  D  F  S  N  V  T  F  L  N  M  S  L  F  F  T  T  I  S  F  A  I  *  V  S  F  F  H  H  F  L  P  F  V  H  *  A  L  L  *  L  N  M  D  S  K  T  L  L  D  Y  A  L  F  Q  L  T  P  T  R  T  R  L  V  L  L  *  T  P  P  P  P  L  S  T  Q  S  L  C  *  L  F  F  *  L  C  I  V  M  E  T  D  K  D  L  I  F  C  V  F  L  I  C  G  Y  *  K  R  C  D  L  V  V  F  S  G  G  K  N  E  K  L  A  S  G  L  V  E  P  F  I  S  H  L  K  F  A  K  D  Q  I  P  K  G  G  Y  S  I  T  M  R  P  P  S  T  H  A  Y  W  F  T  K  A  T  F  L  R :   F  V  R  F  V  S  T  P  E  I  L  E  R  F  M  R  L  E  R  E  I  S  Q  I  E  S  S  I  Q  S  N  E  C  S  N  G  N  S  E  E   : G  S  S  P  A  N  S  E  S  T  R  K  S  N  D  S  F  K  :  A  K  S  E  V  E  E  A  N  N  A  A  P  K  E  N  S  K :   I  H  L  Q  R  H  L  D  T  R  K  A  L  L  R  K  E  Q  A  M  A  Y  A  R  A  T  V  A  G  F  E  I  D  Q  L  D  D  L  I  Q  F  A  N  S  F  G  A  V  R  L  R :   D  A  C  V  D  F  K  E  L  Y  K  Q  K  H  T  D  G  Q  W  M  D  E  V  A  A  M  K  A  C  T  P  M  D  L  S  Y  L  G  N  Q  G  V  I  L  A  Y  D   </first_frame>
            <second_frame>  F  F  F  H  L  Q  F  N  K  K  I  S  Q  M  S  R  S  *  T  C  L  C  S  L  Q  P  F  L  L  L  F  E  F  H  F  F  T  I  F  S  P  L  S  T  K  L  C  F  S  *  T  W  I  P  R  P  F  L  I  M  H  C  F  S  S  P  Q  L  E  Q  G  W  F  C  F  K  H  P  P  P  P  S  P  H  K  V  C  V  N  C  F  F  S  F  V  L  *  W  K  L  I  K  I  *  F  F  V  C  F  *  F  V  G  I  E  K  D  V  I  L  W  C  F  L  G  V  K  M  R  N  W  H  L  G  W  W  N  H  S  F  L  T  *  N  L  L  K  I  R  F  Q  K  V  G  I  Q  S  L  *  G  H  L  Q  L  M  P  T  G  S  P  K  P  H  S  *   : D  L  Y  A  L  L  V  H  L  K  F  L  R  G  L  C  D  W  N  E  R  S  H  R  S  R  V  P  F  N  P  M  N  A  P  M  A  I  Q  R  K  :  E  A  H  Q  L  I  V  R  A  P  G  N  Q  T  I  R  S  R :   Q  N  L  K  L  K  K  L  I  M  L  H  L  K  K  T  P   : R  F  T  F  N  A  T  W  I  P  E  R  H  Y  L  G  K  S  R  P  W  L  M  R  V  Q  P  L  Q  A  L  R  *  T  N  W  M  I  S  Y  S  L  L  I  L  L  V  Q  Y  V  L   : G  M  H  V  *  I  S  R  N  F  T  N  K  S  T  Q  M  D  N  G  W  M  R  *  L  Q  *  R  H  V  H  Q  W  I  Y  R  T  W  E  I  K  V  L  F  L  H  M  T  </second_frame>
            <third_frame>   F  S  S  I  Y  S  S  T  K  R  F  L  K  C  H  V  L  E  H  V  F  V  L  Y  N  H  F  F  C  Y  L  S  F  I  F  S  P  F  S  P  L  C  P  L  S  F  A  L  V  K  H  G  F  Q  D  P  S  *  L  C  T  V  S  A  H  P  N  *  N  K  V  G  F  A  L  N  T  P  P  P  P  L  H  T  K  F  V  L  T  V  F  L  A  L  Y  C  D  G  N  *  *  R  F  D  F  L  C  V  F  D  L  W  V  L  K  K  M  *  S  C  G  V  F  W  G  *  K  *  E  I  G  I  W  V  G  G  T  I  H  F  S  L  E  I  C  *  R  S  D  S  K  R  W  V  F  N  H  Y  E  A  T  F  N  S  C  L  L  V  H  Q  S  H  I  P  K  :  I  C  T  L  C  *  Y  T  *  N  S  *  E  V  Y  A  I  G  T  R  D  L  T  D  R  E  F  H  S  I  Q  *  M  L  Q  W  Q  F  R  G  R :   K  L  T  S  *  *  *  E  H  Q  E  I  K  R  F  V  Q   : G  K  I  *  S  *  R  S  *  *  C  C  T  *  R  K  L  Q  :  D  S  P  S  T  P  P  G  Y  P  K  G  I  T  *  E  R  A  G  H  G  L  C  A  C  N  R  C  R  L  *  D  R  P  I  G  *  S  H  T  V  C  *  F  F  W  C  S  T  S  *  :  G  C  M  C  R  F  Q  G  T  L  Q  T  K  A  H  R  W  T  M  D  G  *  G  S  C  N  E  G  M  Y  T  N  G  S  I  V  L  G  K  S  R  C  Y  S  C  I  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146043" stop="145862"/>
                    <exon start="145470" stop="145349"/>
                    <exon start="145193" stop="145141"/>
                    <exon start="145047" stop="144995"/>
                    <exon start="144904" stop="144752"/>
                    <exon start="144240" stop="144099"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRCDLVVFSGGKNEKLASGLVEPFISHLKFAKDQIPKGGYSITMRPPSTHAYWFTKATFLRFVRFVSTPEILERFMRLEREISQIESSIQSNECSNGNSEEGSSPANSESTRKSNDSFKAKSEVEEANNAAPKENSKIHLQRHLDTRKALLRKEQAMAYARATVAGFEIDQLDDLIQFANSFGAVRLRDACVDFKELYKQKHTDGQWMDEVAAMKACTPMDLSYLGNQGVILAYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="161791" PGL_stop="161372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="161791" e_stop="161372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="161791" e_stop="161372" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161791" stop="161372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161791" stop="161498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161791" stop="161514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAGAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTATGTATATAGTGAGAGAGGCGAGCAAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAGAGAGACGCTGGCAAATTTTAGCTAACGTTTGCTATGGAGCACAATTATATCAAACCCTAGCTATTCCATTTATTTTAGGTTATTAG</gDNA_template>
            <first_frame> C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  Y  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  I  *  F  V  D  L  F  L  C  N  I  *  S  R  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  M  Y  I  V  R  E  A  S  K  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  Y  Q  T  L  A  I  P  F  I  L  G  Y  * </first_frame>
            <second_frame>  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  M  L  Y  K  V  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  S  A  I  F  E  V  E  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  *  *  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  T  F  A  M  E  H  N  Y  I  K  P  *  L  F  H  L  F  *  V  I   </second_frame>
            <third_frame>   Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  L  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  Y  I  I  R  *  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  Y  V  Y  S  E  R  G  E  Q  E  W  R  V  A  S  E  I  S  G  R  E  T  L  A  N  F  S  *  R  L  L  W  S  T  I  I  S  N  P  S  Y  S  I  Y  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0127N23.1" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161632" stop="161372"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRMFVNCIIKCITRRYIFLHVYIQFSLALYKTETELYTSMYIVREASKNGEWRARFLGERRWQILANVCYGAQLYQTLAIPFILGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 239 chains have been computed
$ 
$ memory statistics:
$ 1805016 bytes spliced alignments in total
$ 175 spliced alignments have been stored
$ 10314 bytes was the average size of a spliced alignment
$ 43808 bytes predicted gene locations in total
$ 28 predicted gene locations have been stored
$ 1564 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 283 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:59:30
-->
