<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:40:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544489" ref_strand="+" ref_description="SGN-E544489 [TUS-66-N14]">
      <seq>ctatcagaatcccatccagggggcattacggtcctctaatatctgcaatctcactcaaaccaacttttggatcttgttcagaggaagataaaaagagtgcgactgtttttgttattgttggagtagtgactacatgcattttcctgttattaataagcacactttggtggaaaggatatcttcaatgcaaaaagaaacagagaacagatttagagggcatggagctgcagaccatttcctttactttaaagcaaataaaggctgcaactaataactttgatgcttctaacaagataggggaaggtggttttggtgcagttttcaagggccggttatctgatggtactttagttgcagtgaagcagctctcgcgtcaatcaagacaggggaaccgcgaatttttgaatgagattggcatgatttcttgcttgcaacacccaaatcttgttaagctgcatggttgctgcattgaagggactgaattactgctcgtatatgaatacttggaaaacaatagcctcgctcgcgcattatttcgtaagatattcaatctcttttaaaaaagttcctaaactattaccaactctctaggaaatgtccattaaaatgttagcatgttggacaactttagattcagagaaaagtcagttgatgcttgattggccgacaaggttcaagatttgtgttgggatcgctaaaggtctggctttccttcatgaggaatcaagccttaagattgtacacagagacattaaagctactaatgtactgctagatagagaactaaatcccaaaatttcggactttgggctagctaaacttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="8687" stop="13221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8987" g_stop="9049" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9050" i_stop="11882" i_length="2833">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11883" g_stop="12026" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="207" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12027" i_stop="12221" i_length="195">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.146" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12222" g_stop="12340" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="326" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12341" i_stop="12420" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12421" g_stop="12921" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="827" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E544489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8987" e_stop="9049"/>
          <exon e_start="11883" e_stop="12026"/>
          <exon e_start="12222" e_stop="12340"/>
          <exon e_start="12421" e_stop="12921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCAGAATCCCATCCAGGGGGCATTACGGTCCTCTAATATCTGCAATCTCACTCAAACCAAGTAAGTTTCTTCAATCTTCATCATTTTAAGGGGAATTTCATAGTATATCTGCTTTTACACTTCTCACTTCGGTTTCCTTCAAGTATATTGTGTATTTAAGCATGTCTCAGTGAGAACTAACACAAAAAGGCATGTATCAGTTTAAACTTTAAAGTCCCAAGAGATATAGAGATCGTACATATCATATGAGCAGGTTCATACATGATAAATTTAATTGTTTCTAGAAGAAATACTGCAATTGAATGCATGATCACATGCTCGATTTGCTTATTTGTGGGGTTGACATTGTTTATCAACTTCTGCTGTATAAGATAAAATTGCTGCTATCTAACATAATCCATGTTAATATTGTTGAAGTGTGTAACCATCTCATCTGGTCTGATACCATGTTGAAGTGTGTGACCATCTAATCTAAAAGTTTAAGCTATTAGAGAGCACACTTTAACAGTCAATTATATTCTCAACAAATATGTGGAAAATTCTGATATTTTTTTTTGGGAAAAGGGCCAAAACTACCCTTGAACAATAGGAAAGGGTCTAAAAATACCCTCCATTCATGTTTTGGTCTAAAAATACCCTTTCATTCACCTTTTTGGCTCACATATACCCTTCTATTCACCTTTTTAGCTCACTAATACCCTTTCATTCACCTTTGACTAACTTTATACCTATATAACTAATAACCAATTTTTATTTTTATTTTTTTATAAAAATATTTATTATTTGTCATTTTCTTCTTAGATTAAATAAAAATTCTCATCTCTATTAATTATTTCCCACAATCTATTTAAATCAAAAATATATATACCTCTTCAAGATTCCAATTTTTTTTTTAAAAAAAAATCTAGTACTTTTGAACTGCCCTAAGACCTTGTAAAACTCCACCAACCTTTGAATCTCCCAGTCATTTAGAGGTCTTCTTAAGCTCAGATTCCATCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAGGGTGAAAATATCTAGGAACAATGTTTTTAAAGATCCTTGTTCTAGCCATCTATCTTTCCAAAAAGAAGTTTTCCTTCCATTCCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAATGGTTTCTGATGGCTCTCCAATGGCTTGATCCGTAAGTGCTAGTGACCGTTTTAGTTATCCACAGATTCTCCATTTCATATTTAGCCTGTATTAGATCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGGCACTGATTTTGAATTTTTAAATTCCGTATCCCTATCCCCTTGCCTGTTTACTCTTAATCAGAGTATCCCACTTAAACAAGTGGAATTTCTTGGTTTCACTATTTCCTTCCCACAGGAAATTCCTCCTCAAAGCATCAAGTCTGTCAATAACACCATCAGGAAAAGTGACATCATATATGTAGGCATAGAGTCTAAAACACTATTGATGGGTGTTAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTTCAATCACCCCATTCCAAATGCCTATAGATTTGCTTTTGGCTCCCAAGGGCATCCCCAAATATGTAGTTGGTAGATCTCCTGTCCTTACGCCCAAAATCCTAGTCAGAGAGGGTAAATTAGGGATTTCATTTACTGGATACAAGAAACTCTTGTATCAATTGATGTGAAGCCCAGAGATAGCTTAAAAAAGAATGAAGATTACCCTTAAAATCTTGAGTTGGTTCTTGTTAGCATCACAGAAGACAAGAGTGTCATCTGCATATTGTAAGTGAGTAATCTCTAGACCAGCCCCCACTCTGCTGGATACCCTAAAACCTCTCAGCCACGACTTTTCTTGAGATATTTTCAACATGTCATTTAGTCCCTCCATTGCGATAATAAAAAGAAAGGGAGATAATTGATCTCCTTGCCTTAAACCTCTCTGTGAAGAGAAAAAACCTGTAGTAAAGAGCCATTTATTAAAACAGAGAATTTCACAGTGCTGATGCAAAACTTCATCCATCTTAACCATCTACCTCCAAAACCTCTTTTAGAAATAGTCTCCAACAGGTACTTCCAATTGGGATGGTCATAAGCTTTTTGAGTGTCTAGCTTACATAGGATGCCCGGAGCCTTGCTTCTAGTTCTAGCATCAACTCACTCATTTGCCATAAGAATGGCATCCATTATTTGTCTTCCTTTTATAAAGGCCAACTGTTGGGGGTCCACCAGTTTGTGCGTAACCATTTTGATTCTCTCGGTGAGTATTTTGGAGATGATCTTGTACACGCTACCAATTAGGCTAATGGGTCTGAAGTCAGTGAGCTCCTTAGCACCCATTTTTTTTGGAATTAAAGCCACATAGGTAGAGTTGAAGCTTTTCTCAAAGATGCACCTCTCATGAAAGTTCTTGATTGTAGCAATCACATCTTTTCCAATAGCCTCCCAACAATGGGTATAGAAGGCCATGGTAAAACCATCAGGACCAGGAGCTTTGTCACTAGCACAAAGTTTGACACAATCCCATATCTCTTGATCCTCAAATTCCTTCTGAAGCATGTAATTATCTTCGGCATTCAAAGGGTCATTCTATATGGCCAAGGAAATCCATTTTCGTAATTTTGGTTGAATTAACAGACAGAATTTCTCAGCTTGAAGGAGTGTTGGATGAGTGCCCATGTATTTTTCTTTGCTATTATTTTCCCATGAATAAATGCATGTTGATATTCATATTCTATGAAATTAACTGGAAGAATCTTATTTTCTATTCCCCCTGCTGTTGCATACACTTAACAATCTTGTCTTCATTTTTGTGTAGCTTTTGGATCTTGTTCAGAGGAAGATAAAAAGAGTGCGACTGTTTTTGTTATTGTTGGAGTAGTGACTACATGCATTTTCCTGTTATTAATAAGCACACTTTGGTGGAAAGGATATCTTCAATGCAAAAAGAAACAGAGAACAGGTAATCACTGAACAGATGTTAGAATGAAGTAATTTTAACTAGCAAATTTTGTGACTAGGCAATGAGCTGATCCATGCATTACTGATATGAAAGAGCACATTCTACTGAAATGATAATCAAAGAAAACTCCATATCCAGAAGTTGCGAGTTATTAATAGATGACTAACCAGTGAAGTTTCTCTACTTCCATGACAGATTTAGAGGGCATGGAGCTGCAGACCATTTCCTTTACTTTAAAGCAAATAAAGGCTGCAACTAATAACTTTGATGCTTCTAACAAGATAGGGGAAGGTGGTTTTGGTGCAGTTTTCAAGGTATCACTTTGGTAACAACAGTAATATAGTATCATCTTTATCATTATTGGTTGTGAACTCTGACCTAATACTTTATGTAGGGCCGGTTATCTGATGGTACTTTAGTTGCAGTGAAGCAGCTCTCGCGTCAATCAAGACAGGGGAACCGCGAATTTTTGAATGAGATTGGCATGATTTCTTGCTTGCAACACCCAAATCTTGTTAAGCTGCATGGTTGCTGCATTGAAGGGACTGAATTACTGCTCGTATATGAATACTTGGAAAACAATAGCCTCGCTCGCGCATTATTTCGTAAGATATTCAATCTCTTTTAAAAAAGTTCCTAAACTATTACCAACTCTCTAGGAAATGTCCATTAAAATGTTAGCATGTTGGACAACTTTAGATTCAGAGAAAAGTCAGTTGATGCTTGATTGGCCGACAAGGTTCAAGATTTGTGTTGGGATCGCTAAAGGTCTGGCTTTCCTTCATGAGGAATCAAGCCTTAAGATTGTACACAGAGACATTAAAGCTACTAATGTACTGCTAGATAGAGAACTAAATCCCAAAATTTCGGACTTTGGGCTAGCTAAACTTACTGA</genome_strand>
        <mrna_strand>CTATCAGAATCCCATCCAGGGGGCATTACGGTCCTCTAATATCTGCAATCTCACTCAAACCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGATCTTGTTCAGAGGAAGATAAAAAGAGTGCGACTGTTTTTGTTATTGTTGGAGTAGTGACTACATGCATTTTCCTGTTATTAATAAGCACACTTTGGTGGAAAGGATATCTTCAATGCAAAAAGAAACAGAGAACAG...................................................................................................................................................................................................ATTTAGAGGGCATGGAGCTGCAGACCATTTCCTTTACTTTAAAGCAAATAAAGGCTGCAACTAATAACTTTGATGCTTCTAACAAGATAGGGGAAGGTGGTTTTGGTGCAGTTTTCAAG................................................................................GGCCGGTTATCTGATGGTACTTTAGTTGCAGTGAAGCAGCTCTCGCGTCAATCAAGACAGGGGAACCGCGAATTTTTGAATGAGATTGGCATGATTTCTTGCTTGCAACACCCAAATCTTGTTAAGCTGCATGGTTGCTGCATTGAAGGGACTGAATTACTGCTCGTATATGAATACTTGGAAAACAATAGCCTCGCTCGCGCATTATTTCGTAAGATATTCAATCTCTTTTAAAAAAGTTCCTAAACTATTACCAACTCTCTAGGAAATGTCCATTAAAATGTTAGCATGTTGGACAACTTTAGATTCAGAGAAAAGTCAGTTGATGCTTGATTGGCCGACAAGGTTCAAGATTTGTGTTGGGATCGCTAAAGGTCTGGCTTTCCTTCATGAGGAATCAAGCCTTAAGATTGTACACAGAGACATTAAAGCTACTAATGTACTGCTAGATAGAGAACTAAATCCCAAAATTTCGGACTTTGGGCTAGCTAAACTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307226" ref_strand="+" ref_description="SGN-E307226 [cLEY-15-J14]">
      <seq>tatcagaatcccatccagggggcattacggtcctctaatatctgcaatctcactcaaaccaacttttggatcttgttcagaggaagataaaaagagtgcgactgtttttgttattgttggagtagtgactacatgcattttcctgttattaataagcacactttggtggaaaggatatcttcaatgcaaaaagaaacagagaacagatttagagggcatggagctgcagaccatttcctttactttaaagcaaataaaggctgcaactaataactttgatgcttctaacaagataggggaaggtggttttggtgcagttttcaagggccggttatctgatggtactttagttgcagtgaagcagctctcgcgtcaatcaagacaggggaaccgcgaatttttgaatgagattggcatgatttcttgcttgcaacacccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="8688" stop="12838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8988" g_stop="9049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9050" i_stop="11882" i_length="2833">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11883" g_stop="12026" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="206" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12027" i_stop="12221" i_length="195">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.146" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12222" g_stop="12340" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="325" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12341" i_stop="12420" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12421" g_stop="12538" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="443" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E307226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8988" e_stop="9049"/>
          <exon e_start="11883" e_stop="12026"/>
          <exon e_start="12222" e_stop="12340"/>
          <exon e_start="12421" e_stop="12538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAGAATCCCATCCAGGGGGCATTACGGTCCTCTAATATCTGCAATCTCACTCAAACCAAGTAAGTTTCTTCAATCTTCATCATTTTAAGGGGAATTTCATAGTATATCTGCTTTTACACTTCTCACTTCGGTTTCCTTCAAGTATATTGTGTATTTAAGCATGTCTCAGTGAGAACTAACACAAAAAGGCATGTATCAGTTTAAACTTTAAAGTCCCAAGAGATATAGAGATCGTACATATCATATGAGCAGGTTCATACATGATAAATTTAATTGTTTCTAGAAGAAATACTGCAATTGAATGCATGATCACATGCTCGATTTGCTTATTTGTGGGGTTGACATTGTTTATCAACTTCTGCTGTATAAGATAAAATTGCTGCTATCTAACATAATCCATGTTAATATTGTTGAAGTGTGTAACCATCTCATCTGGTCTGATACCATGTTGAAGTGTGTGACCATCTAATCTAAAAGTTTAAGCTATTAGAGAGCACACTTTAACAGTCAATTATATTCTCAACAAATATGTGGAAAATTCTGATATTTTTTTTTGGGAAAAGGGCCAAAACTACCCTTGAACAATAGGAAAGGGTCTAAAAATACCCTCCATTCATGTTTTGGTCTAAAAATACCCTTTCATTCACCTTTTTGGCTCACATATACCCTTCTATTCACCTTTTTAGCTCACTAATACCCTTTCATTCACCTTTGACTAACTTTATACCTATATAACTAATAACCAATTTTTATTTTTATTTTTTTATAAAAATATTTATTATTTGTCATTTTCTTCTTAGATTAAATAAAAATTCTCATCTCTATTAATTATTTCCCACAATCTATTTAAATCAAAAATATATATACCTCTTCAAGATTCCAATTTTTTTTTTAAAAAAAAATCTAGTACTTTTGAACTGCCCTAAGACCTTGTAAAACTCCACCAACCTTTGAATCTCCCAGTCATTTAGAGGTCTTCTTAAGCTCAGATTCCATCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAGGGTGAAAATATCTAGGAACAATGTTTTTAAAGATCCTTGTTCTAGCCATCTATCTTTCCAAAAAGAAGTTTTCCTTCCATTCCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAATGGTTTCTGATGGCTCTCCAATGGCTTGATCCGTAAGTGCTAGTGACCGTTTTAGTTATCCACAGATTCTCCATTTCATATTTAGCCTGTATTAGATCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGGCACTGATTTTGAATTTTTAAATTCCGTATCCCTATCCCCTTGCCTGTTTACTCTTAATCAGAGTATCCCACTTAAACAAGTGGAATTTCTTGGTTTCACTATTTCCTTCCCACAGGAAATTCCTCCTCAAAGCATCAAGTCTGTCAATAACACCATCAGGAAAAGTGACATCATATATGTAGGCATAGAGTCTAAAACACTATTGATGGGTGTTAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTTCAATCACCCCATTCCAAATGCCTATAGATTTGCTTTTGGCTCCCAAGGGCATCCCCAAATATGTAGTTGGTAGATCTCCTGTCCTTACGCCCAAAATCCTAGTCAGAGAGGGTAAATTAGGGATTTCATTTACTGGATACAAGAAACTCTTGTATCAATTGATGTGAAGCCCAGAGATAGCTTAAAAAAGAATGAAGATTACCCTTAAAATCTTGAGTTGGTTCTTGTTAGCATCACAGAAGACAAGAGTGTCATCTGCATATTGTAAGTGAGTAATCTCTAGACCAGCCCCCACTCTGCTGGATACCCTAAAACCTCTCAGCCACGACTTTTCTTGAGATATTTTCAACATGTCATTTAGTCCCTCCATTGCGATAATAAAAAGAAAGGGAGATAATTGATCTCCTTGCCTTAAACCTCTCTGTGAAGAGAAAAAACCTGTAGTAAAGAGCCATTTATTAAAACAGAGAATTTCACAGTGCTGATGCAAAACTTCATCCATCTTAACCATCTACCTCCAAAACCTCTTTTAGAAATAGTCTCCAACAGGTACTTCCAATTGGGATGGTCATAAGCTTTTTGAGTGTCTAGCTTACATAGGATGCCCGGAGCCTTGCTTCTAGTTCTAGCATCAACTCACTCATTTGCCATAAGAATGGCATCCATTATTTGTCTTCCTTTTATAAAGGCCAACTGTTGGGGGTCCACCAGTTTGTGCGTAACCATTTTGATTCTCTCGGTGAGTATTTTGGAGATGATCTTGTACACGCTACCAATTAGGCTAATGGGTCTGAAGTCAGTGAGCTCCTTAGCACCCATTTTTTTTGGAATTAAAGCCACATAGGTAGAGTTGAAGCTTTTCTCAAAGATGCACCTCTCATGAAAGTTCTTGATTGTAGCAATCACATCTTTTCCAATAGCCTCCCAACAATGGGTATAGAAGGCCATGGTAAAACCATCAGGACCAGGAGCTTTGTCACTAGCACAAAGTTTGACACAATCCCATATCTCTTGATCCTCAAATTCCTTCTGAAGCATGTAATTATCTTCGGCATTCAAAGGGTCATTCTATATGGCCAAGGAAATCCATTTTCGTAATTTTGGTTGAATTAACAGACAGAATTTCTCAGCTTGAAGGAGTGTTGGATGAGTGCCCATGTATTTTTCTTTGCTATTATTTTCCCATGAATAAATGCATGTTGATATTCATATTCTATGAAATTAACTGGAAGAATCTTATTTTCTATTCCCCCTGCTGTTGCATACACTTAACAATCTTGTCTTCATTTTTGTGTAGCTTTTGGATCTTGTTCAGAGGAAGATAAAAAGAGTGCGACTGTTTTTGTTATTGTTGGAGTAGTGACTACATGCATTTTCCTGTTATTAATAAGCACACTTTGGTGGAAAGGATATCTTCAATGCAAAAAGAAACAGAGAACAGGTAATCACTGAACAGATGTTAGAATGAAGTAATTTTAACTAGCAAATTTTGTGACTAGGCAATGAGCTGATCCATGCATTACTGATATGAAAGAGCACATTCTACTGAAATGATAATCAAAGAAAACTCCATATCCAGAAGTTGCGAGTTATTAATAGATGACTAACCAGTGAAGTTTCTCTACTTCCATGACAGATTTAGAGGGCATGGAGCTGCAGACCATTTCCTTTACTTTAAAGCAAATAAAGGCTGCAACTAATAACTTTGATGCTTCTAACAAGATAGGGGAAGGTGGTTTTGGTGCAGTTTTCAAGGTATCACTTTGGTAACAACAGTAATATAGTATCATCTTTATCATTATTGGTTGTGAACTCTGACCTAATACTTTATGTAGGGCCGGTTATCTGATGGTACTTTAGTTGCAGTGAAGCAGCTCTCGCGTCAATCAAGACAGGGGAACCGCGAATTTTTGAATGAGATTGGCATGATTTCTTGCTTGCAACACCCAAATC</genome_strand>
        <mrna_strand>TATCAGAATCCCATCCAGGGGGCATTACGGTCCTCTAATATCTGCAATCTCACTCAAACCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGATCTTGTTCAGAGGAAGATAAAAAGAGTGCGACTGTTTTTGTTATTGTTGGAGTAGTGACTACATGCATTTTCCTGTTATTAATAAGCACACTTTGGTGGAAAGGATATCTTCAATGCAAAAAGAAACAGAGAACAG...................................................................................................................................................................................................ATTTAGAGGGCATGGAGCTGCAGACCATTTCCTTTACTTTAAAGCAAATAAAGGCTGCAACTAATAACTTTGATGCTTCTAACAAGATAGGGGAAGGTGGTTTTGGTGCAGTTTTCAAG................................................................................GGCCGGTTATCTGATGGTACTTTAGTTGCAGTGAAGCAGCTCTCGCGTCAATCAAGACAGGGGAACCGCGAATTTTTGAATGAGATTGGCATGATTTCTTGCTTGCAACACCCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353725" ref_strand="+" ref_description="SGN-E353725 [cTOS-10-C10]">
      <seq>caagaacaactatggctatgtgccttctgagaatttcatttgtcttttagattgggcctgtcacttgctgcaaaatggaaaaatagaggagctgattgatgataaattgggttctcagtttagcaaagcagaagcagaattgataataaaagtagcgctattatgcacttgtgcgacgccatcactcaggcctgtaatgtctgaggctgtaggcatgcttgaaggaaaaagagatgcccctgatagtatcccagaagcaaatatgtatactgacgatttgagatttcaagccttgaaagatttccaacaagagaggcaaaatcaaagtgcgtcaagtaatcaagctcagcgttcaagcatccaaactgcctctgatctctgtgaatacaaccccgaatcaagatctgatgactaactgaatacaaccccgaatcaagatctgatgactaactctttactgtgtgtgtattcttatttaatctttgccagtgtgcctgtgtcttatggttcatgagggattacattggttcaaagccactcatcgaggtatgattgctgtaacttgtaactatttgttcaatttttgtgagtgagatttctataaaatgtacataaattaatatcccaagaaaattgtgaggagcttttttgcacctcctagctagatttcaatttgtataatattctgccccattgtgataaaccctgaatgtagactatatgggtcttctgaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12864" stop="14354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13164" g_stop="13218" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13219" i_stop="13364" i_length="146">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13365" g_stop="14057" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="745" r_length="690" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E353725" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13164" e_stop="13218"/>
          <exon e_start="13365" e_stop="14057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACAACTATGGCTATGTGCCTTCTGAGAATTTCATTTGTCTTTTAGATTGGGTATCTTTTCATTACCTTTTTGTTAATGCACTTCAACAAAGGCTGACCATTCTACCATTTATAAGATTTGAGAATCCTTGAACTTTTTTAACCATGAACCTCTCACACTCCCTTTGAAGTTGCTAGCTTATAAAACTTTATTGCAGGCCTGTCACTTGCTGCAAAATGGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCACCTCCTAGCTAGATTTCAAATTTGTATAATATTCTGCCCCATTGTGATAAACCTGAAATGTAGACTATATGGTCTTTCTGTAAACAAAAAAGGA</genome_strand>
        <mrna_strand>CAAGAACAACTATGGCTATGTGCCTTCTGAGAATTTCATTTGTCTTTTAGATTGG..................................................................................................................................................GCCTGTCACTTGCTGCAAAATGGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAG-AAAATTGTGAGGAGCTTTTTTGCACCTCCTAGCTAGATTTC-AATTTGTATAATATTCTGCCCCATTGTGATAAACCCTGAATGTAGACTATATGGGTCTTCTG-AAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736532" ref_strand="+" ref_description="SGN-E736532 [LC06AE07]">
      <seq>ttctgagaatttcatttgtcttttagattgggcctgtcacttgctgcaaaatagaaaaatagaggagctgattgatgataaattgggttctcagtttagcaaagcagaagcagaattgataataaaagtagcgctattatgcacttgtgcgacgccatcactcaggcctgtaatgtctgaggctgtaggcatgcttgaaggaaaaagagatgcccctgatagtatcccagaagcaaatatgtatactgacgatttgagatttcaagccttgaaagatttccaacaagagaggcaaaatcaaagtgcgtcaagtaatcaagctcagcgttcaagcatccaaactgcctctgatctctgtgaatacaaccccgaatcaagatctgatgactaactgaatacaaccccgaatcaagatctgatgactaactctttactgtgtgtgtattcttatttaatctttgccagtgtgcctgtgtcttatggttcatgagggattacattggttcaaagccactcatcgaggtatgattgctgtaacttgtaactatttgttcaatttttgtgagtgagatttctataaaatgtacataaattaatatcccaagaaaaattgtgaggagcttttttgcnnnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12888" stop="14262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13188" g_stop="13218" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13219" i_stop="13364" i_length="146">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13365" g_stop="13970" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="637" r_length="606" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="648"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E736532" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13188" e_stop="13218"/>
          <exon e_start="13365" e_stop="13970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAGAATTTCATTTGTCTTTTAGATTGGGTATCTTTTCATTACCTTTTTGTTAATGCACTTCAACAAAGGCTGACCATTCTACCATTTATAAGATTTGAGAATCCTTGAACTTTTTTAACCATGAACCTCTCACACTCCCTTTGAAGTTGCTAGCTTATAAAACTTTATTGCAGGCCTGTCACTTGCTGCAAAATGGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCACCTCCTA</genome_strand>
        <mrna_strand>TTCTGAGAATTTCATTTGTCTTTTAGATTGG..................................................................................................................................................GCCTGTCACTTGCTGCAAAATAGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCNNNNAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737248" ref_strand="+" ref_description="SGN-E737248 [LC09AA09]">
      <seq>ttctgagaatttcatttgtcttttagattgggcctgtcacttgctgcaaaatagaaaaatagaggagctgattgatgataaattgggttctcagtttagcaaagcagaagcagaattgataataaaagtagcgctattatgcacttgtgcgacgccatcactcaggcctgtaatgtctgaggctgtaggcatgcttgaaggaaaaagagatgcccctgatagtatcccagaagcaaatatgtatactgacgatttgagatttcaagccttgaaagatttccaacaagagaggcaaaatcaaagtgcgtcaagtaatcaagctcagcgttcaagcatccaaactgcctctgatctctgtgaatacaaccccgaatcaagatctgatgactaactgaatacaaccccgaatcaagatctgatgactaactctttactgtgtgtgtattcttatttaatctttgccagtgtgcctgtgtcttatggttcatgagggattacattggttcaaagccactcatcgaggtatgattgctgtaacttgtaactatttgttcaatttttgtgagtgagatttctataaaatgtacataaattaatatcccaagaaaaattgtgaggagcttttttgcnnnnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12888" stop="14262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13188" g_stop="13218" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13219" i_stop="13364" i_length="146">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13365" g_stop="13970" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="637" r_length="606" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="649"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E737248" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13188" e_stop="13218"/>
          <exon e_start="13365" e_stop="13970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAGAATTTCATTTGTCTTTTAGATTGGGTATCTTTTCATTACCTTTTTGTTAATGCACTTCAACAAAGGCTGACCATTCTACCATTTATAAGATTTGAGAATCCTTGAACTTTTTTAACCATGAACCTCTCACACTCCCTTTGAAGTTGCTAGCTTATAAAACTTTATTGCAGGCCTGTCACTTGCTGCAAAATGGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCACCTCCTA</genome_strand>
        <mrna_strand>TTCTGAGAATTTCATTTGTCTTTTAGATTGG..................................................................................................................................................GCCTGTCACTTGCTGCAAAATAGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCNNNNNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737671" ref_strand="+" ref_description="SGN-E737671 [LC10DC03]">
      <seq>ttctgagaatttcatttgtcttttagattgggcctgtcacttgctgcaaaatagaaaaatagaggagctgattgatgataaattgggttctcagtttagcaaagcagaagcagaattgataataaaagtagcgctattatgcacttgtgcgacgccatcactcaggcctgtaatgtctgaggctgtaggcatgcttgaaggaaaaagagatgcccctgatagtatcccagaagcaaatatgtatactgacgatttgagatttcaagccttgaaagatttccaacaagagaggcaaaatcaaagtgcgtcaagtaatcaagctcagcgttcaagcatccaaactgcctctgatctctgtgaatacaaccccgaatcaagatctgatgactaactgaatacaaccccgaatcaagatctgatgactaactctttactgtgtgtgtattcttatttaatctttgccagtgtgcctgtgtcttatggttcatgagggattacattggttcaaagccactcatcgaggtatgattgctgtaacttgtaactatttgttcaatttttgtgagtgagatttctataaaatgtacataaattaatatcccaagaaaaattgtgaggagcttttttgcaaaaaaaaaaaaaaaaaaaaaaaaaanccctggggggggggccgggacccaatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12888" stop="14263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13188" g_stop="13218" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13219" i_stop="13364" i_length="146">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13365" g_stop="13970" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="637" r_length="606" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="656"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E737671" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13188" e_stop="13218"/>
          <exon e_start="13365" e_stop="13970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAGAATTTCATTTGTCTTTTAGATTGGGTATCTTTTCATTACCTTTTTGTTAATGCACTTCAACAAAGGCTGACCATTCTACCATTTATAAGATTTGAGAATCCTTGAACTTTTTTAACCATGAACCTCTCACACTCCCTTTGAAGTTGCTAGCTTATAAAACTTTATTGCAGGCCTGTCACTTGCTGCAAAATGGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCACCTCCTA</genome_strand>
        <mrna_strand>TTCTGAGAATTTCATTTGTCTTTTAGATTGG..................................................................................................................................................GCCTGTCACTTGCTGCAAAATAGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544488" ref_strand="+" ref_description="SGN-E544488 [TUS-66-N14](-)">
      <seq>aaaatgaaaaaatagaggagctgattgatgataaattgggttctcagtttagcaaagcagaagcagaattgataataaaagtagcgctattatgcacttgtgcgacgccatcactcaggcctgtaatgtctgaggctgtaggcatgcttgaaggaaaaagagatgcccctgatagtatcccagaagcaaatatgtatactgacgatttgagatttcaagccttgaaagatttccaacaagagaggcaaaatcaaagtgcgtcaagtaatcaagctcagcgttcaagcatccaaactgcctctgatctctgtgaatacaaccccgaatcaagatctgatgactaactgaatacaaccccgaatcaagatctgatgactaactctttactgtgtgtgtattcttatttaatctttgccagtgtgcctgtgtcttatggttcatgagggattacattggttcaaagccactcatcgaggtatgattgctgtaacttgtaactatttgttcaatttttgtgagtgagatttctataaaatgtacataaattaatatcccaagaaaaattgtgaggagcttttttgcacctcctagctagatttcaaatttgtataatattctgccccattgtgataaacctgaaatgtagactatatggtctttctgtaaacaaaaaaggattcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="13081" stop="14369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13381" g_stop="14063" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="695"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E544488" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13381" e_stop="14063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCACCTCCTAGCTAGATTTCAAATTTGTATAATATTCTGCCCCATTGTGATAAACCTGAAATGTAGACTATATGGTCTTTCTGTAAACAAAAAAGGATTCATT</genome_strand>
        <mrna_strand>AAAATGAAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCACCTCCTAGCTAGATTTCAAATTTGTATAATATTCTGCCCCATTGTGATAAACCTGAAATGTAGACTATATGGTCTTTCTGTAAACAAAAAAGGATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278592" ref_strand="+" ref_description="SGN-E278592 [cLER-10-F11]">
      <seq>tatatgtgggggagtcacgggattggtgatggattgacttgtccacattgattaatttaatgatgaaaaaaaaaggataaaaaaaaaggcaatgtgattaaatatttaagtgtgatgtgttcagaaagggatgaaggattgttgaatcattgttgatgtgatttcatgtttgtgtggttttgaattgtgcaatgttatgaaaatggtgatctcctcattatttgtgtgaacttgccatctgcattattatgaggcattggttgtgacaagtgttatgtgcattgagaaagaatgagtacttaagaggatgtacaatttcgagggacgtatcgcgcgccgcgatggatactatatttcgagggacgtatcgcatgccgcgatggatactatattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="20619" stop="21615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20919" g_stop="21315" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E278592" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20919" e_stop="21315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGTTTGGGAGTAATGGGATTGGTGATGGGTTGACTTGTCCATATTGATTAATTATAATGATGAAAAAAAAAGGGGATAACAAAAGGCAATGTGGTTAATTGTTTATGTGTGATGTGTTGAGAAAGAGTTGAAGGCTTGTTGAATCATTGTCGATGTGACTTCATGTTTGTGTGGTTGTGAATTGTGTGATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAATTTGTCATCTGCATTATTCTGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATAAGTACTTAAGAGGATGTACCATTTCGAGGGACGTATCGCGCGCTGCGATGGATACTGTATTTCGAGGGACGTATCGCGCGCCGCGATGGTTACTAT-TATCGA</genome_strand>
        <mrna_strand>TATATGTGGGGGAGTCACGGGATTGGTGATGGATTGACTTGTCCACATTGATTAATT-TAATGATGAAAAAAAAAGGATAAAAAAAAAGGCAATGTGATTAAATATTTAAGTGTGATGTGTTCAGAAAGGGATGAAGGATTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTTTGAATTGTGCAATGTTATGAAAATGGTGATCTCCTCATTATTTGTGTGAACTTGCCATCTGCATTATTATGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATGAGTACTTAAGAGGATGTACAATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCATGCCGCGATGGATACTATATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584428" ref_strand="+" ref_description="SGN-E584428 [10254]">
      <seq>ctagtggatcccccgaggctgcaggttcatgggtgctgtatttgaagcagaccagttactgcttgtatatgaatacttagataacaatagccttgcgagcgttttgtttgccgattgaatctggattggcccacaaggtttaggatctgtctcggaatagcaagaggtctagcttttctacatgaggaatcaagcctaaaaattgtacatcgggacatcaaagctaccaatgtgcttctggatggacagctcaatcccaaaatctccgactttggactagctagactcagtgaagatgagaagactcatattagtactcgagttgctggaacaataggatacatggcaccagaatacgcactctggggttatttgactgacaaggcagatgtttacagctttggagttgtacttttggaaactgtcagtggaaagaacaacaataactacatgccgagccacactagcatttgtctcttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="36055" stop="37282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36362" g_stop="36446" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="110" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36447" i_stop="36534" i_length="88">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36535" g_stop="36759" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="335" r_length="225" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36760" i_stop="36834" i_length="75">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36835" g_stop="36982" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="483" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E584428" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36362" e_stop="36446"/>
          <exon e_start="36535" e_stop="36759"/>
          <exon e_start="36835" e_stop="36982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTGGGTGCTGTA-TTGAAGCAGACCAGTTACTGCTTGTATATGAATACTTAGATAACAATAGCCTTGCGAGCGTTTTGTTTGGTAATTACTCCGTGTCCTCTTTATGTATAAATCTAGTTATCCTCTGGGTCAAGATTTTCAGTGGTTAATTTTCTGGTTCAGAGAACAGTCGGTTGAATCTGGATTGGCCTACAAGGTTTAGGATCTGTCTCGGAATAGCTAGAGGTCTAGCTTTTCTACATGAGGAATCAAGCGTAAAAATTGTACATCGGGACATCAAAGCTACCAATGTGCTTCTGGATGGACAGCTCAATCCCAAAATCTCCGACTTTGGACTAGCTAGACTCACTGAAGAAGAGAAGACCCATATTAGTACTCGAGTTGCTGGAACAATGTAAGGTCACTGCTTTTCCAGCTAGAAGTCTTAAGTATTTTAAGTTGACAAACCTTCTAATCTCAACACCTGCAGAGGATACATGGCACCAGAATATGCACTCTGGGGTTATTTGACTGACAAGGCAGATGTTTACAGCTTTGGAGTTGTACTTTTGGAAACTGTCAGTGGAAAGAACAACAACAACTACATGCCAAGCCACACCAGCATTTGTCTCTTAGAT</genome_strand>
        <mrna_strand>GTTCATGGGTGCTGTATTTGAAGCAGACCAGTTACTGCTTGTATATGAATACTTAGATAACAATAGCCTTGCGAGCGTTTTGTTTG........................................................................................CCGATTGAATCTGGATTGGCCCACAAGGTTTAGGATCTGTCTCGGAATAGCAAGAGGTCTAGCTTTTCTACATGAGGAATCAAGCCTAAAAATTGTACATCGGGACATCAAAGCTACCAATGTGCTTCTGGATGGACAGCTCAATCCCAAAATCTCCGACTTTGGACTAGCTAGACTCAGTGAAGATGAGAAGACTCATATTAGTACTCGAGTTGCTGGAACAAT...........................................................................AGGATACATGGCACCAGAATACGCACTCTGGGGTTATTTGACTGACAAGGCAGATGTTTACAGCTTTGGAGTTGTACTTTTGGAAACTGTCAGTGGAAAGAACAACAATAACTACATGCCGAGCCACACTAGCATTTGTCTCTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487283" ref_strand="+" ref_description="SGN-E487283 [cSTE-25-E19]">
      <seq>cagcaacttgccttcttctcctcaaatctatcatctccatttttttaaacaaaacaattttttttctcagaaaaatacccaaaaaaatctcttaaatttttatatgattagtactcaagcttttgaagtttaagggaccatgccaacaatcttcaatttctttctcatcttcttcaccatagttatttgctttacagcaggcaacattgaagcacaaactggtcaacttcctaaagatgaagtggaagctcttagagaagtagctgatcaattggggaaaaaagattgggattttaagctaaacccttgtgatgggaactcaaattggagcacacccaaaaggaaagacatgcctttgtataccaatatcctagaatgcaactgcacttttcttgataatctttgtcatgtggaaaacatatctctcataggacaggatcttgcaggtgtcctccctgcatctctggcgaagttaccatatctgaggaatattaatctcaaccgcaactacttaagtggtataattccccctgaatgggcatctaccaagttggaaagcatgactatatctaataatcggttatctgggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="40975" stop="43095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41275" g_stop="41530" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41531" i_stop="41609" i_length="79">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41610" g_stop="41787" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="420" r_length="178" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41788" i_stop="42458" i_length="671">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="0.708" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42459" g_stop="42530" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="492" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42531" i_stop="42617" i_length="87">
            <donor d_prob="0.259" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42686" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="561" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42687" i_stop="42764" i_length="78">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.910" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42765" g_stop="42795" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="592" r_length="31" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E487283" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41275" e_stop="41530"/>
          <exon e_start="41610" e_stop="41787"/>
          <exon e_start="42459" e_stop="42530"/>
          <exon e_start="42618" e_stop="42686"/>
          <exon e_start="42765" e_stop="42795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACTTGTCTTCTTCTCCTTAAATCTATTATCTCCATTTTTTTAAAACAATTTTTTCCTCAGAGCAGCTTCATTTTCTCAGAAAAAGACCCAAAAAAATCACTGAAATTTTCATATGAGTAGTACTCAAGCTTTTGAAGTTTAAGGGACCATGCCAAGAATCTTCAATTTCTTTCTCATCTTCTTCACCATAGTTATTTGCTTTACTGCAGACAACATTGAAGCACAAACTGGTCAACTTCCTAGAGATGAAGGTAAAAAAGATTTGAACTTTTTCATTTTTTAGTTAATGTATGTGAAAAAAAGTTGATGCCCATTTACTTTGATTGGCAGTGGAAGCTCTTAGAGAAATAGCTGATCAATTGGGGAAAAAAGATTGGGATTTTAAGCTAAACCCTTGTGATGGGAACTCAAATTGGAGTACACCCAAAAGGAAAGATATGCCTTGGTATACAAATATGCTAGAATGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAATATGTGAGTCTCCAATATTACTCCCTCTTTCTCTCCAATGGATGTGTTTTGTTAGGTAGTCGTTGAAGTTATGAAAATTGATGTGTTAATGTAGTTATGCTTCTACCTACTTTAAAGTTGTTTTAGTTTAGACCCTTTACTGAATTCCTTAGGAAGCAAAATTAGTGACTTATGTTTGGTTTCATGGGGTATAGAACCAATATGCTATGCTTGGTTACAGTTTAAAATCCGTCATTATATGTTTGTTCTAGTTTTTTTTTTATGTTGAAATGGTTTTTCTTTATCCATGGGCAATGGGTGAAGTATTGGTCCAGATTAAACTGCTAAGACTAAATTTTTGGCATATTGAGGAAGTCCTCAGGGTATCCTTTTTTGAATATAAGTTATAAACACACCCTTGGTTTGGATTACTTCTACTGTTTTGGTTGATATCTTGATTCAAAGAAAATTGTTAGATGATATTAGGTATAAGCTTATAATAGACTGGTATTAGATTTATTGTTAGAAATTAGAATACCATGTCTTTATCTAAATATTTGAATGTCACACGACTAATTCTGGAATTATCTAATCACGACTTCATTGCATTATGAAACTGATTGAGATTATATTAACAGGACAGGATTATTTCTAAGTCTAGTGATTCTGACAGAAGCTGCTCTAATTGTTAACAGATCTCTCATAGGGCAGGATCTTGCAGGTGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAATGTACTGAGAGCATCCAGAACAATTGTTAAAAAATCAGTTCGAATTCTACTTATTTTTAAAATCATTATGATTTTACCCTTTTTGCAGTGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCATGTGAGGCAATTTATTCATATGCATTTGTTAAAATTTAACCTTTGATTTAGGGCTTCTCATGAATTTGAAGTTTTCCAGGGCTATTTCTAATAATCGGTTATCTGGGCAT</genome_strand>
        <mrna_strand>CAGCAACTTGCCTTCTTCTCCTCAAATCTATCATCTCCATTTTTTT-AAACAA----------A-A-CA-ATTTTTTTTCTCAGAAAAATACCCAAAAAAATCTCTTAAATTTTTATATGATTAGTACTCAAGCTTTTGAAGTTTAAGGGACCATGCCAACAATCTTCAATTTCTTTCTCATCTTCTTCACCATAGTTATTTGCTTTACAGCAGGCAACATTGAAGCACAAACTGGTCAACTTCCTAAAGATGAAG...............................................................................TGGAAGCTCTTAGAGAAGTAGCTGATCAATTGGGGAAAAAAGATTGGGATTTTAAGCTAAACCCTTGTGATGGGAACTCAAATTGGAGCACACCCAAAAGGAAAGACATGCCTTTGTATACCAATATCCTAGAATGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAACAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCATAGGACAGGATCTTGCAGGTGTCCTCCCTGCATCTCTGGCGAAGTTACCATATCTGAGGAATAT.......................................................................................TAATCTCAACCGCAACTACTTAAGTGGTATAATTCCCCCTGAATGGGCATCTACCAAGTTGGAAAGCAT..............................................................................GACTATATCTAATAATCGGTTATCTGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427530" ref_strand="+" ref_description="SGN-E427530 [STM-48-L5]">
      <seq>cagcaacttgccttcttctcctcaaatctatcatctccatttttttaaacaaaacaattttttttctcagaaaaatacccaaaaaaatctcttaaatttttatatgattagtactcaagcttttgaagtttaagggaccatgccaacaatcttcaatttctttctcatcttcttcaccatagttatttgctttacagcaggcaacattgaagcacaaactggtcaacttcctaaagatgaagtggaagctcttagagaagtagctgatcaattggggaaaaaagattgggattttaagctaaacccttgtgatgggaactcaaattggagcacacccaaaaggaaagacatgcctttgtataccaatatcctagaatgcaactgcacttttcttgataatctttgtcatgtggaaaacatatctctcataggacaggatcttgcaggtgtcctccctgcatctctggcgaagttaccatatctgaggaatattaatctcaaccgcaactacttaagtggtataattccccctgaatgggcatctaccaagttggaaagcatgactatatctaataatcggttatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="40975" stop="43091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41275" g_stop="41530" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41531" i_stop="41609" i_length="79">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41610" g_stop="41787" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="420" r_length="178" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41788" i_stop="42458" i_length="671">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="0.708" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42459" g_stop="42530" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="492" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42531" i_stop="42617" i_length="87">
            <donor d_prob="0.259" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42686" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="561" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42687" i_stop="42764" i_length="78">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.910" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42765" g_stop="42791" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="588" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E427530" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41275" e_stop="41530"/>
          <exon e_start="41610" e_stop="41787"/>
          <exon e_start="42459" e_stop="42530"/>
          <exon e_start="42618" e_stop="42686"/>
          <exon e_start="42765" e_stop="42791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACTTGTCTTCTTCTCCTTAAATCTATTATCTCCATTTTTTTAAAACAATTTTTTCCTCAGAGCAGCTTCATTTTCTCAGAAAAAGACCCAAAAAAATCACTGAAATTTTCATATGAGTAGTACTCAAGCTTTTGAAGTTTAAGGGACCATGCCAAGAATCTTCAATTTCTTTCTCATCTTCTTCACCATAGTTATTTGCTTTACTGCAGACAACATTGAAGCACAAACTGGTCAACTTCCTAGAGATGAAGGTAAAAAAGATTTGAACTTTTTCATTTTTTAGTTAATGTATGTGAAAAAAAGTTGATGCCCATTTACTTTGATTGGCAGTGGAAGCTCTTAGAGAAATAGCTGATCAATTGGGGAAAAAAGATTGGGATTTTAAGCTAAACCCTTGTGATGGGAACTCAAATTGGAGTACACCCAAAAGGAAAGATATGCCTTGGTATACAAATATGCTAGAATGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAATATGTGAGTCTCCAATATTACTCCCTCTTTCTCTCCAATGGATGTGTTTTGTTAGGTAGTCGTTGAAGTTATGAAAATTGATGTGTTAATGTAGTTATGCTTCTACCTACTTTAAAGTTGTTTTAGTTTAGACCCTTTACTGAATTCCTTAGGAAGCAAAATTAGTGACTTATGTTTGGTTTCATGGGGTATAGAACCAATATGCTATGCTTGGTTACAGTTTAAAATCCGTCATTATATGTTTGTTCTAGTTTTTTTTTTATGTTGAAATGGTTTTTCTTTATCCATGGGCAATGGGTGAAGTATTGGTCCAGATTAAACTGCTAAGACTAAATTTTTGGCATATTGAGGAAGTCCTCAGGGTATCCTTTTTTGAATATAAGTTATAAACACACCCTTGGTTTGGATTACTTCTACTGTTTTGGTTGATATCTTGATTCAAAGAAAATTGTTAGATGATATTAGGTATAAGCTTATAATAGACTGGTATTAGATTTATTGTTAGAAATTAGAATACCATGTCTTTATCTAAATATTTGAATGTCACACGACTAATTCTGGAATTATCTAATCACGACTTCATTGCATTATGAAACTGATTGAGATTATATTAACAGGACAGGATTATTTCTAAGTCTAGTGATTCTGACAGAAGCTGCTCTAATTGTTAACAGATCTCTCATAGGGCAGGATCTTGCAGGTGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAATGTACTGAGAGCATCCAGAACAATTGTTAAAAAATCAGTTCGAATTCTACTTATTTTTAAAATCATTATGATTTTACCCTTTTTGCAGTGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCATGTGAGGCAATTTATTCATATGCATTTGTTAAAATTTAACCTTTGATTTAGGGCTTCTCATGAATTTGAAGTTTTCCAGGGCTATTTCTAATAATCGGTTATCTGG</genome_strand>
        <mrna_strand>CAGCAACTTGCCTTCTTCTCCTCAAATCTATCATCTCCATTTTTTT-AAACAA----------A-A-CA-ATTTTTTTTCTCAGAAAAATACCCAAAAAAATCTCTTAAATTTTTATATGATTAGTACTCAAGCTTTTGAAGTTTAAGGGACCATGCCAACAATCTTCAATTTCTTTCTCATCTTCTTCACCATAGTTATTTGCTTTACAGCAGGCAACATTGAAGCACAAACTGGTCAACTTCCTAAAGATGAAG...............................................................................TGGAAGCTCTTAGAGAAGTAGCTGATCAATTGGGGAAAAAAGATTGGGATTTTAAGCTAAACCCTTGTGATGGGAACTCAAATTGGAGCACACCCAAAAGGAAAGACATGCCTTTGTATACCAATATCCTAGAATGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAACAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCATAGGACAGGATCTTGCAGGTGTCCTCCCTGCATCTCTGGCGAAGTTACCATATCTGAGGAATAT.......................................................................................TAATCTCAACCGCAACTACTTAAGTGGTATAATTCCCCCTGAATGGGCATCTACCAAGTTGGAAAGCAT..............................................................................GACTATATCTAATAATCGGTTATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339305" ref_strand="+" ref_description="SGN-E339305 [cTOF-4-P5]">
      <seq>ttaaatctattatctccatttttttaaaacaatgttttcctcagagcagcttcattttctcagaaaaagacccaaaaaaatcactgaaattttcatatgagtagtactcaagcttttgaagtttaagggaccatgccaagaatcttcaatgtctttctcatcttcttcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="40996" stop="41768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41296" g_stop="41468" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E339305" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41296" e_stop="41468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCTATTATCTCCATTTTTTTAAAACAATTTTTTCCTCAGAGCAGCTTCATTTTCTCAGAAAAAGACCCAAAAAAATCACTGAAATTTTCATATGAGTAGTACTCAAGCTTTTGAAGTTTAAGGGACCATGCCAAGAATCTTCAATTTCTTTCTCATCTTCTTCACCAT</genome_strand>
        <mrna_strand>TTAAATCTATTATCTCCATTTTTTTAAAACAATGTTTTCCTCAGAGCAGCTTCATTTTCTCAGAAAAAGACCCAAAAAAATCACTGAAATTTTCATATGAGTAGTACTCAAGCTTTTGAAGTTTAAGGGACCATGCCAAGAATCTTCAATGTCTTTCTCATCTTCTTCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738459" ref_strand="+" ref_description="SGN-E738459 [LC13CH08]">
      <seq>cctttaaatagctgatcaattggggaaaaaagattgggattttaatctaaacccttgtgatgggaactcaaattggagtacacccaaaaggaaagatatgccttggtatacaaatatgctagaatgcaactgcacttttcttgataatctttgtcatgtggaaaatatatctctcatatggcaggatcttgcaggtgtcctacctgcatctctggcgaagttaccatacctgaggaaaattgatctcaaccgcaactacttaaatggtacaattccccctgaatgggcgtctaccaagttggagatcatggctatttctaataatcggttatctgggcatgtccctgagtacataggaaatatgacctcgcttgtgagattgagtttggagactaacttgtttaatggatcgttaccagcagaagtagggaatctggtcaatttaaagatgctgagagtggccagtggaactgaataatcttactaaattggatgaacttaggataaccagtaacagctttgttgggaaactgcctaactttgagagttggaaaaacctccggaagctagaaattgaaggttctggatttgaaggaccactacccccaagtttttctgttttgagcagtttggaagaactaagaatcagtgacctcaacggaggtgcttcagaatttccatcacttacaaacctgacgagtatgactaaattgcttttgagaagctgtaatatacatggaaatattcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41325" stop="45747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41620" g_stop="41787" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41788" i_stop="42458" i_length="671">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.708" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42459" g_stop="42530" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="240" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42531" i_stop="42617" i_length="87">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42618" g_stop="42686" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="309" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42687" i_stop="42764" i_length="78">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42765" g_stop="42836" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="381" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42837" i_stop="42917" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42918" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="453" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42990" i_stop="44777" i_length="1788">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44778" g_stop="44823" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="499" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44824" i_stop="44923" i_length="100">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44924" g_stop="44992" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="568" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44993" i_stop="45065" i_length="73">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45066" g_stop="45137" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="640" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45138" i_stop="45243" i_length="106">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45244" g_stop="45315" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="712" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="45316" i_stop="45407" i_length="92">
            <donor d_prob="0.283" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="45408" g_stop="45447" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="752" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E738459" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41620" e_stop="41787"/>
          <exon e_start="42459" e_stop="42530"/>
          <exon e_start="42618" e_stop="42686"/>
          <exon e_start="42765" e_stop="42836"/>
          <exon e_start="42918" e_stop="42989"/>
          <exon e_start="44778" e_stop="44823"/>
          <exon e_start="44924" e_stop="44992"/>
          <exon e_start="45066" e_stop="45137"/>
          <exon e_start="45244" e_stop="45315"/>
          <exon e_start="45408" e_stop="45447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAAATAGCTGATCAATTGGGGAAAAAAGATTGGGATTTTAAGCTAAACCCTTGTGATGGGAACTCAAATTGGAGTACACCCAAAAGGAAAGATATGCCTTGGTATACAAATATGCTAGAATGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAATATGTGAGTCTCCAATATTACTCCCTCTTTCTCTCCAATGGATGTGTTTTGTTAGGTAGTCGTTGAAGTTATGAAAATTGATGTGTTAATGTAGTTATGCTTCTACCTACTTTAAAGTTGTTTTAGTTTAGACCCTTTACTGAATTCCTTAGGAAGCAAAATTAGTGACTTATGTTTGGTTTCATGGGGTATAGAACCAATATGCTATGCTTGGTTACAGTTTAAAATCCGTCATTATATGTTTGTTCTAGTTTTTTTTTTATGTTGAAATGGTTTTTCTTTATCCATGGGCAATGGGTGAAGTATTGGTCCAGATTAAACTGCTAAGACTAAATTTTTGGCATATTGAGGAAGTCCTCAGGGTATCCTTTTTTGAATATAAGTTATAAACACACCCTTGGTTTGGATTACTTCTACTGTTTTGGTTGATATCTTGATTCAAAGAAAATTGTTAGATGATATTAGGTATAAGCTTATAATAGACTGGTATTAGATTTATTGTTAGAAATTAGAATACCATGTCTTTATCTAAATATTTGAATGTCACACGACTAATTCTGGAATTATCTAATCACGACTTCATTGCATTATGAAACTGATTGAGATTATATTAACAGGACAGGATTATTTCTAAGTCTAGTGATTCTGACAGAAGCTGCTCTAATTGTTAACAGATCTCTCATAGGGCAGGATCTTGCAGGTGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAATGTACTGAGAGCATCCAGAACAATTGTTAAAAAATCAGTTCGAATTCTACTTATTTTTAAAATCATTATGATTTTACCCTTTTTGCAGTGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCATGTGAGGCAATTTATTCATATGCATTTGTTAAAATTTAACCTTTGATTTAGGGCTTCTCATGAATTTGAAGTTTTCCAGGGCTATTTCTAATAATCGGTTATCTGGGCATGTCCCTGAGTACATAGGAAATATGACCTCGCTTGTGAGATTGTAAGTTCCCTTGCTTTCACTTTTCTCAGACTGACTGTACATGACTACTTGAAATATTCTGAAGTCATCATAACTTTTCAGGAGTTTGGAGACTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCTGTATGTCTTCCTTACTCTTCTATTTCCTAACTGATTTTTCACAAGTCAATTTACTGTTTGTATTGTGTGGAAGATGTGATCGTGAGTTAAAAGTGAAATGAAGCTTAAGAATAGAATGGAGAATTGCAGATGGTTGTTTACTGTTTAGGGAGTAGACTATGAAAATCCAAAATGTGAGACTGAGTAAGCTGTATTTGCAAGGTGACCATGTATAGATGTTTCGTTTGGTACTTTTCTTTTAGCTGTGGTGTTCAGGCACGCTTGCACATATCTCAATCAGTCCTCATGATAGCTTACTACATCCCACAAGCACATGTGCCAATAAGCCTGTCGACCTAGGTTAGAGCAGATGAGCTCACATTGAGTGTTGTTGCTGAGTTTCAAATTGTTGCTCCTATATCTTAACCATTCAACTATCTCCTTGGGGGCACAATGCTATGTCTGATACACTCCTATATCTTAACCATTCTACTATCTCTTGGGGACAATGCTTTGTCTGGTACATTGGGGTACTATTGAAAGGAGAAGTAAGGCAAGAGATATAGGATACGGTTCCAGGTATTAAGGCTATGTAAGTGTACTTCCAATGAAGGGAAAGTGATACAATTTTGAGTCAAGTGAGGATGTTTTGATCAAAATTGTTTGAAAACAAGGTCAATATTGTGGGTTTTGAGAGCCAACCATTGTTGCCTGGAGACCTGTGAGCCTCATTTTATGCTAAGGACTAACTCTGAGGTGGAAATGGTTCTTAGTTGTGTTTGGTTGAGATTCTAGTTTAAGCACCTTTGTAGGATGCAGTTCTTTGCAAGGTCCCATCATTAGGAAAGGCCGTGGTGTGGAGGTTATTCTTAATGATAAGAGAGTTATGCTTTCATAATTGGTCACCGTCCATCAAGATAGGAGGAATAAGTCATAGCTTATAACTGTCATCAATGAAGGCATGCTGATTTTGATAATAAATGCATCTCTGTAGTCTTTTAGAAATCAAGAAGTGCAATAATTCAAATTGCTTCTGAGGCTATTTATAAGTGAGAAGCAAGACACTTGTACAGTGTACCTTCTTGGAAGTTAAGCGTATAATTTTAGGATGAAACACTAAAATAGCTAACATATGGAAATTTATTATTTGTAACAGCAAAACTGCAAACTGACTCTACTGCTTTCAATATCATATATACAACAATAACATACTTAATTCCAAAAATTCTTTCAAAACATTGTATGTACTTGAATAAAGATGTTAGAAATAGAAAATGAAATAGAGAGAATGAAAAAGAAAAACAAAAAATAATTTTTTTGACAGGATGAGAGAAAAGAATTGAAATTATTGTCAACTTAGAAGTGGAAAAGAAGAAGAAACACACAGAAGGAGAAGAAAAATAAGAAAGAAGCAAATCTACAATAAACAGAATAGAAGAAGAGTCGTAATGAACCCAAGAAGAAGTAGAAAGAGACAACGAAGAGATCACTAAGCATATGAAGAGAGGAGCCCTAGTACTCAAATGAAAAAAAAAAGTTCTTTTTATCCCCCTTTTTCATTTTTAAAAATCATGCCTGCGGATTGCTTTGCGTGTTACTGCTTTAGGCAAATGCTTCTTTAAGGTTGTGTTACTTCACCCATGCTTAGCAAGGACACCTCTTCCAATTGCTTAATCACTTTAAATGAATGAGGGTTTGCTTTAAAACATTGTGTGTTTTTACTAGAGCAGATCAAGTGTGAGCTGCGTTTGATTCTAAATTCTATGAACTTTGATTGTTGCAGCAATCTGAAAGCTAATAATTTCACAGGAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACTGTGAGTGCACTTGAATAGTCATCTGAGGATGAGATTTCTTAGTCTTCTTCCACATATGTTAAGTTGAATTCTTGGCTTTCCTCTTTTGGCATCAACACAGTAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCTGTGAGTATTTTCATTTAGTATATTTATACAAGTTAGAAATTTCCAGTAGAATTAGTATATGCTCTTTTGACAGAGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACTGTAAGTTTACGCTTTATATGAAAAGTTTATTTTGCTTTTTGCAATGTTCTTATGATTAAGCATAGTAGAAATCAAGATAATTAAGGCTCAGATGATGCATATACAGAAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACTAAATTGTGAGTACTTGATGATTTGGGAATTGCAAATGGAATTTCCAATACATCCTTTATCAAGGAAAGTTAATTATCTGAAACTGTGTTTACTGCAGGGTTTTGAGAAGCTGTAATATACATGGAAATATTCATGAT</genome_strand>
        <mrna_strand>CCTTTAAATAGCTGATCAATTGGGGAAAAAAGATTGGGATTTTAATCTAAACCCTTGTGATGGGAACTCAAATTGGAGTACACCCAAAAGGAAAGATATGCCTTGGTATACAAATATGCTAGAATGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCATATGGCAGGATCTTGCAGGTGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAAT.......................................................................................TGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCAT..............................................................................GGCTATTTCTAATAATCGGTTATCTGGGCATGTCCCTGAGTACATAGGAAATATGACCTCGCTTGTGAGATT.................................................................................GAGTTTGGAGACTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAAAGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACT....................................................................................................TAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCT.........................................................................AGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACT..........................................................................................................AAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACCTGACGAGTATGACTAAATT............................................................................................GCTTTTGAGAAGCTGTAATATACATGGAAATATTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739614" ref_strand="+" ref_description="SGN-E739614 [LC18AF08]">
      <seq>cgctactgcacttttcttgataatctttgtcatgtggaaaatatatctctcatagggcaggatcttgcaggtgtcctacctgcatctctggcgaagttaccatacctgaggaaaattgatctcaaccgcaactacttaaatggtacaattccccctgaatgggcgtctaccaagttggagatcatggctatttctaataatcggttatctgggcatgtccctgagtacataggaaatatgacctcgcttgtgagattgagtttggagactaacttgtttaatggatcgttaccagcagaagtagggaatctggtcaatttagagatgctgagagtggccagtggaactgaataatcttactaaattggatgaacttaggataaccagtaacagctttgttgggaaactgcctaactttgagagttggaaaaacctccggaagctagaaattgaaggttctggatttgaaggaccactacccccaagtttttctgttttgagcagtttggaagaactaagaatcagtgacctcaacggaggtgcttcagaatttccatcacttacaaacttgacgagtatgactaaattggttttgagaagctgtaatatacatggaaatattcatgattctgtagctgaaatggtcaacttacggtttttagatctaagtttcaacaatcttgaaggaggaattgcaaatctcgagcacgtgactcagatggaggccacgtatctgactggcaatgcttttgttggacaaattccaaattggcttactagtcgagataccagaaatgtgatagacctttcctacaataaatttgatgaaagctctgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41445" stop="47056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41744" g_stop="41787" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41788" i_stop="42458" i_length="671">
            <donor d_prob="0.889" d_score="0.95"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42459" g_stop="42530" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="116" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42531" i_stop="42617" i_length="87">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42618" g_stop="42686" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="185" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42687" i_stop="42764" i_length="78">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42765" g_stop="42836" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="257" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42837" i_stop="42917" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42918" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="329" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42990" i_stop="44777" i_length="1788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44778" g_stop="44823" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="375" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44824" i_stop="44923" i_length="100">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44924" g_stop="44992" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="444" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44993" i_stop="45065" i_length="73">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45066" g_stop="45137" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="516" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45138" i_stop="45243" i_length="106">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45244" g_stop="45315" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="588" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="45316" i_stop="45407" i_length="92">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="45408" g_stop="45479" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="660" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="45480" i_stop="45765" i_length="286">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="45766" g_stop="45834" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="729" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="45835" i_stop="46279" i_length="445">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="46280" g_stop="46345" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="795" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="46346" i_stop="46711" i_length="366">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="46712" g_stop="46756" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="840" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E739614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41744" e_stop="41787"/>
          <exon e_start="42459" e_stop="42530"/>
          <exon e_start="42618" e_stop="42686"/>
          <exon e_start="42765" e_stop="42836"/>
          <exon e_start="42918" e_stop="42989"/>
          <exon e_start="44778" e_stop="44823"/>
          <exon e_start="44924" e_stop="44992"/>
          <exon e_start="45066" e_stop="45137"/>
          <exon e_start="45244" e_stop="45315"/>
          <exon e_start="45408" e_stop="45479"/>
          <exon e_start="45766" e_stop="45834"/>
          <exon e_start="46280" e_stop="46345"/>
          <exon e_start="46712" e_stop="46756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAATATGTGAGTCTCCAATATTACTCCCTCTTTCTCTCCAATGGATGTGTTTTGTTAGGTAGTCGTTGAAGTTATGAAAATTGATGTGTTAATGTAGTTATGCTTCTACCTACTTTAAAGTTGTTTTAGTTTAGACCCTTTACTGAATTCCTTAGGAAGCAAAATTAGTGACTTATGTTTGGTTTCATGGGGTATAGAACCAATATGCTATGCTTGGTTACAGTTTAAAATCCGTCATTATATGTTTGTTCTAGTTTTTTTTTTATGTTGAAATGGTTTTTCTTTATCCATGGGCAATGGGTGAAGTATTGGTCCAGATTAAACTGCTAAGACTAAATTTTTGGCATATTGAGGAAGTCCTCAGGGTATCCTTTTTTGAATATAAGTTATAAACACACCCTTGGTTTGGATTACTTCTACTGTTTTGGTTGATATCTTGATTCAAAGAAAATTGTTAGATGATATTAGGTATAAGCTTATAATAGACTGGTATTAGATTTATTGTTAGAAATTAGAATACCATGTCTTTATCTAAATATTTGAATGTCACACGACTAATTCTGGAATTATCTAATCACGACTTCATTGCATTATGAAACTGATTGAGATTATATTAACAGGACAGGATTATTTCTAAGTCTAGTGATTCTGACAGAAGCTGCTCTAATTGTTAACAGATCTCTCATAGGGCAGGATCTTGCAGGTGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAATGTACTGAGAGCATCCAGAACAATTGTTAAAAAATCAGTTCGAATTCTACTTATTTTTAAAATCATTATGATTTTACCCTTTTTGCAGTGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCATGTGAGGCAATTTATTCATATGCATTTGTTAAAATTTAACCTTTGATTTAGGGCTTCTCATGAATTTGAAGTTTTCCAGGGCTATTTCTAATAATCGGTTATCTGGGCATGTCCCTGAGTACATAGGAAATATGACCTCGCTTGTGAGATTGTAAGTTCCCTTGCTTTCACTTTTCTCAGACTGACTGTACATGACTACTTGAAATATTCTGAAGTCATCATAACTTTTCAGGAGTTTGGAGACTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCTGTATGTCTTCCTTACTCTTCTATTTCCTAACTGATTTTTCACAAGTCAATTTACTGTTTGTATTGTGTGGAAGATGTGATCGTGAGTTAAAAGTGAAATGAAGCTTAAGAATAGAATGGAGAATTGCAGATGGTTGTTTACTGTTTAGGGAGTAGACTATGAAAATCCAAAATGTGAGACTGAGTAAGCTGTATTTGCAAGGTGACCATGTATAGATGTTTCGTTTGGTACTTTTCTTTTAGCTGTGGTGTTCAGGCACGCTTGCACATATCTCAATCAGTCCTCATGATAGCTTACTACATCCCACAAGCACATGTGCCAATAAGCCTGTCGACCTAGGTTAGAGCAGATGAGCTCACATTGAGTGTTGTTGCTGAGTTTCAAATTGTTGCTCCTATATCTTAACCATTCAACTATCTCCTTGGGGGCACAATGCTATGTCTGATACACTCCTATATCTTAACCATTCTACTATCTCTTGGGGACAATGCTTTGTCTGGTACATTGGGGTACTATTGAAAGGAGAAGTAAGGCAAGAGATATAGGATACGGTTCCAGGTATTAAGGCTATGTAAGTGTACTTCCAATGAAGGGAAAGTGATACAATTTTGAGTCAAGTGAGGATGTTTTGATCAAAATTGTTTGAAAACAAGGTCAATATTGTGGGTTTTGAGAGCCAACCATTGTTGCCTGGAGACCTGTGAGCCTCATTTTATGCTAAGGACTAACTCTGAGGTGGAAATGGTTCTTAGTTGTGTTTGGTTGAGATTCTAGTTTAAGCACCTTTGTAGGATGCAGTTCTTTGCAAGGTCCCATCATTAGGAAAGGCCGTGGTGTGGAGGTTATTCTTAATGATAAGAGAGTTATGCTTTCATAATTGGTCACCGTCCATCAAGATAGGAGGAATAAGTCATAGCTTATAACTGTCATCAATGAAGGCATGCTGATTTTGATAATAAATGCATCTCTGTAGTCTTTTAGAAATCAAGAAGTGCAATAATTCAAATTGCTTCTGAGGCTATTTATAAGTGAGAAGCAAGACACTTGTACAGTGTACCTTCTTGGAAGTTAAGCGTATAATTTTAGGATGAAACACTAAAATAGCTAACATATGGAAATTTATTATTTGTAACAGCAAAACTGCAAACTGACTCTACTGCTTTCAATATCATATATACAACAATAACATACTTAATTCCAAAAATTCTTTCAAAACATTGTATGTACTTGAATAAAGATGTTAGAAATAGAAAATGAAATAGAGAGAATGAAAAAGAAAAACAAAAAATAATTTTTTTGACAGGATGAGAGAAAAGAATTGAAATTATTGTCAACTTAGAAGTGGAAAAGAAGAAGAAACACACAGAAGGAGAAGAAAAATAAGAAAGAAGCAAATCTACAATAAACAGAATAGAAGAAGAGTCGTAATGAACCCAAGAAGAAGTAGAAAGAGACAACGAAGAGATCACTAAGCATATGAAGAGAGGAGCCCTAGTACTCAAATGAAAAAAAAAAGTTCTTTTTATCCCCCTTTTTCATTTTTAAAAATCATGCCTGCGGATTGCTTTGCGTGTTACTGCTTTAGGCAAATGCTTCTTTAAGGTTGTGTTACTTCACCCATGCTTAGCAAGGACACCTCTTCCAATTGCTTAATCACTTTAAATGAATGAGGGTTTGCTTTAAAACATTGTGTGTTTTTACTAGAGCAGATCAAGTGTGAGCTGCGTTTGATTCTAAATTCTATGAACTTTGATTGTTGCAGCAATCTGAAAGCTAATAATTTCACAGGAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACTGTGAGTGCACTTGAATAGTCATCTGAGGATGAGATTTCTTAGTCTTCTTCCACATATGTTAAGTTGAATTCTTGGCTTTCCTCTTTTGGCATCAACACAGTAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCTGTGAGTATTTTCATTTAGTATATTTATACAAGTTAGAAATTTCCAGTAGAATTAGTATATGCTCTTTTGACAGAGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACTGTAAGTTTACGCTTTATATGAAAAGTTTATTTTGCTTTTTGCAATGTTCTTATGATTAAGCATAGTAGAAATCAAGATAATTAAGGCTCAGATGATGCATATACAGAAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACTAAATTGTGAGTACTTGATGATTTGGGAATTGCAAATGGAATTTCCAATACATCCTTTATCAAGGAAAGTTAATTATCTGAAACTGTGTTTACTGCAGGGTTTTGAGAAGCTGTAATATACATGGAAATATTCATGATTCTGTAGCTGAAATGGTCAACTTACGGTTTTTGTAATTCCACTTCTTTTCCTTCTACTAGCCTACTCTTTTTGAATGGGAGAGGTCAATGGGTCATTGAATCTTGAAGAGATGCAAACAACATACCTCACTTTCGCTGAATGTACCAATTTTATTCTTTCTTGAAACAAAATGATCTTTACAAAAATGTCATCGGAGCTTTTGTTTACTCTATCCTTTATCTAAACTTAATTAAGCTTTTAACAATTGTGTGATAGTTTGTACAGCCAGTGGAATTGAACATTGTTTTGAGTTCGACTCTGTTTATTGGTCATTGCAGAGATCTAAGTTTCAACAATCTTGAAGGAGGAATTGCAAATCTCGAGCACGTGACTCAGATGGAGGCCACGTAAGTCAAAACAACATGAAGATTCCTACAATTTTATGTGGAAATATTTCTTTTGCATCTCTGTTTCATTATTAGTAGTCTTAGTATATGACTGTTGATGGCTCATCCATCAATCTTCTGTATTCTTCCAAATGCTCCAGCCCTTTACTTTCGTTTGAAGAAACGAAGAAAATTGCTTCAATGACAGAAACAGTCTTAGATGGCAAATGCCTTTACATGATATTTCTTATTTTTTTCCCACAAATTTCTGAGATTCTGATAGTTTCTTTTGATAGATCAGTAGTTTTCTCTAGGTGAGCTGCACAGAAAAATGAGCCTTCATTTGATCGGCAATCTCTTTCCATTGTTGTGTGTAGATGAGTTCATGCTCTTGAAAATGTAATGCAGATATTGCATTTTCAAATTTGTGATCTCCTCCTTAAATCAGATATTTTCTGCTTGCCAGGTATCTGACTGGCAATGCTTTTGTTGGACAAATTCCAAATTGGCTTACTAGTCGAGATACCAGAAAGTAAGTGTACTTCTTTGTCTTGCTTTTGCATATACACTAGTCATTCTTTTGAACTCAATTTAAAAAAGGACATGTATAACAAGGTGAACATTAAAGGTTACAACCAAAAATGTGGTTGCTCACATAGAGAATCAGATTAAAAAGTCATTCATAGATACCTAGTCCAGAACTTGAATTCTCGAGTGAGGAACAACGATAGCTTTGTGTAAATTTGTTTGATGGGCAATAAACAAAGATATTGAGATTTAATTAACTGATTTGTCATTAATTTCATTGCATATAAATCTATTTTCTCTAAGTAAAGGCCTCTCATTAGAGTGGAAGTACTTGATGAGCTCTTAACCATGTCGGATATCTTTGATGCAGTGTGATAGACCTTTCCTACAATAAATTTGATGAAAGCTCTGAACC</genome_strand>
        <mrna_strand>CGCTACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCATAGGGCAGGATCTTGCAGGTGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAAT.......................................................................................TGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCAT..............................................................................GGCTATTTCTAATAATCGGTTATCTGGGCATGTCCCTGAGTACATAGGAAATATGACCTCGCTTGTGAGATT.................................................................................GAGTTTGGAGACTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACT....................................................................................................TAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCT.........................................................................AGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACT..........................................................................................................AAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACTAAATT............................................................................................GGTTTTGAGAAGCTGTAATATACATGGAAATATTCATGATTCTGTAGCTGAAATGGTCAACTTACGGTTTTT..............................................................................................................................................................................................................................................................................................AGATCTAAGTTTCAACAATCTTGAAGGAGGAATTGCAAATCTCGAGCACGTGACTCAGATGGAGGCCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTGACTGGCAATGCTTTTGTTGGACAAATTCCAAATTGGCTTACTAGTCGAGATACCAGAAA..............................................................................................................................................................................................................................................................................................................................................................................TGTGATAGACCTTTCCTACAATAAATTTGATGAAAGCTCTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736323" ref_strand="+" ref_description="SGN-E736323 [LC05AH08]">
      <seq>tgtcctacctgcatctctggcgaagttaccatacctgaggaaaattgatctcaaccgcaactacttaaatggtacaattccccctgaatgggcgtctaccatgttggagatcatggctatttctaataatcggctatctgggcatgtccctgactacataggatatatgacctcgcttgtgagattgagtttggagactaacttgtttaatggatcgttaccagcagaagtagggaatctggtcaatttagagatgctcaatctgaaagctaataatttcacaggagagtggccagtggaactgaataatcttactaaattggatgaacttaggataaccagtaacagctttgttgggaaactgcctaactttgagagttggaaaaacctccggaagctacaaattgaaggttctggatttgaaggaccactacccccaagtttttctgttttgagcagtttggaagaactaagaatcagtgacctcaacggaagtgcttcagaatttccatcacttacaaacttgacgagtatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="42186" stop="45610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42486" g_stop="42530" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42531" i_stop="42617" i_length="87">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42618" g_stop="42686" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="114" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42687" i_stop="42764" i_length="78">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42765" g_stop="42836" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="186" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42837" i_stop="42917" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42918" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="258" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42990" i_stop="44751" i_length="1762">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44752" g_stop="44823" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="330" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44824" i_stop="44923" i_length="100">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44924" g_stop="44992" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="399" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44993" i_stop="45065" i_length="73">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45066" g_stop="45137" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="471" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45138" i_stop="45243" i_length="106">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45244" g_stop="45310" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="538" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E736323" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42486" e_stop="42530"/>
          <exon e_start="42618" e_stop="42686"/>
          <exon e_start="42765" e_stop="42836"/>
          <exon e_start="42918" e_stop="42989"/>
          <exon e_start="44752" e_stop="44823"/>
          <exon e_start="44924" e_stop="44992"/>
          <exon e_start="45066" e_stop="45137"/>
          <exon e_start="45244" e_stop="45310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAATGTACTGAGAGCATCCAGAACAATTGTTAAAAAATCAGTTCGAATTCTACTTATTTTTAAAATCATTATGATTTTACCCTTTTTGCAGTGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCATGTGAGGCAATTTATTCATATGCATTTGTTAAAATTTAACCTTTGATTTAGGGCTTCTCATGAATTTGAAGTTTTCCAGGGCTATTTCTAATAATCGGTTATCTGGGCATGTCCCTGAGTACATAGGAAATATGACCTCGCTTGTGAGATTGTAAGTTCCCTTGCTTTCACTTTTCTCAGACTGACTGTACATGACTACTTGAAATATTCTGAAGTCATCATAACTTTTCAGGAGTTTGGAGACTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCTGTATGTCTTCCTTACTCTTCTATTTCCTAACTGATTTTTCACAAGTCAATTTACTGTTTGTATTGTGTGGAAGATGTGATCGTGAGTTAAAAGTGAAATGAAGCTTAAGAATAGAATGGAGAATTGCAGATGGTTGTTTACTGTTTAGGGAGTAGACTATGAAAATCCAAAATGTGAGACTGAGTAAGCTGTATTTGCAAGGTGACCATGTATAGATGTTTCGTTTGGTACTTTTCTTTTAGCTGTGGTGTTCAGGCACGCTTGCACATATCTCAATCAGTCCTCATGATAGCTTACTACATCCCACAAGCACATGTGCCAATAAGCCTGTCGACCTAGGTTAGAGCAGATGAGCTCACATTGAGTGTTGTTGCTGAGTTTCAAATTGTTGCTCCTATATCTTAACCATTCAACTATCTCCTTGGGGGCACAATGCTATGTCTGATACACTCCTATATCTTAACCATTCTACTATCTCTTGGGGACAATGCTTTGTCTGGTACATTGGGGTACTATTGAAAGGAGAAGTAAGGCAAGAGATATAGGATACGGTTCCAGGTATTAAGGCTATGTAAGTGTACTTCCAATGAAGGGAAAGTGATACAATTTTGAGTCAAGTGAGGATGTTTTGATCAAAATTGTTTGAAAACAAGGTCAATATTGTGGGTTTTGAGAGCCAACCATTGTTGCCTGGAGACCTGTGAGCCTCATTTTATGCTAAGGACTAACTCTGAGGTGGAAATGGTTCTTAGTTGTGTTTGGTTGAGATTCTAGTTTAAGCACCTTTGTAGGATGCAGTTCTTTGCAAGGTCCCATCATTAGGAAAGGCCGTGGTGTGGAGGTTATTCTTAATGATAAGAGAGTTATGCTTTCATAATTGGTCACCGTCCATCAAGATAGGAGGAATAAGTCATAGCTTATAACTGTCATCAATGAAGGCATGCTGATTTTGATAATAAATGCATCTCTGTAGTCTTTTAGAAATCAAGAAGTGCAATAATTCAAATTGCTTCTGAGGCTATTTATAAGTGAGAAGCAAGACACTTGTACAGTGTACCTTCTTGGAAGTTAAGCGTATAATTTTAGGATGAAACACTAAAATAGCTAACATATGGAAATTTATTATTTGTAACAGCAAAACTGCAAACTGACTCTACTGCTTTCAATATCATATATACAACAATAACATACTTAATTCCAAAAATTCTTTCAAAACATTGTATGTACTTGAATAAAGATGTTAGAAATAGAAAATGAAATAGAGAGAATGAAAAAGAAAAACAAAAAATAATTTTTTTGACAGGATGAGAGAAAAGAATTGAAATTATTGTCAACTTAGAAGTGGAAAAGAAGAAGAAACACACAGAAGGAGAAGAAAAATAAGAAAGAAGCAAATCTACAATAAACAGAATAGAAGAAGAGTCGTAATGAACCCAAGAAGAAGTAGAAAGAGACAACGAAGAGATCACTAAGCATATGAAGAGAGGAGCCCTAGTACTCAAATGAAAAAAAAAAGTTCTTTTTATCCCCCTTTTTCATTTTTAAAAATCATGCCTGCGGATTGCTTTGCGTGTTACTGCTTTAGGCAAATGCTTCTTTAAGGTTGTGTTACTTCACCCATGCTTAGCAAGGACACCTCTTCCAATTGCTTAATCACTTTAAATGAATGAGGGTTTGCTTTAAAACATTGTGTGTTTTTACTAGAGCAGATCAAGTGTGAGCTGCGTTTGATTCTAAATTCTATGAACTTTGATTGTTGCAGCAATCTGAAAGCTAATAATTTCACAGGAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACTGTGAGTGCACTTGAATAGTCATCTGAGGATGAGATTTCTTAGTCTTCTTCCACATATGTTAAGTTGAATTCTTGGCTTTCCTCTTTTGGCATCAACACAGTAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCTGTGAGTATTTTCATTTAGTATATTTATACAAGTTAGAAATTTCCAGTAGAATTAGTATATGCTCTTTTGACAGAGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACTGTAAGTTTACGCTTTATATGAAAAGTTTATTTTGCTTTTTGCAATGTTCTTATGATTAAGCATAGTAGAAATCAAGATAATTAAGGCTCAGATGATGCATATACAGAAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACT</genome_strand>
        <mrna_strand>TGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAAT.......................................................................................TGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCATGTTGGAGATCAT..............................................................................GGCTATTTCTAATAATCGGCTATCTGGGCATGTCCCTGACTACATAGGATATATGACCTCGCTTGTGAGATT.................................................................................GAGTTTGGAGACTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTGAAAGCTAATAATTTCACAGGAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACT....................................................................................................TAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCT.........................................................................ACAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACT..........................................................................................................AAGAATCAGTGACCTCAACGGAAGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738651" ref_strand="+" ref_description="SGN-E738651 [LC14BH08]">
      <seq>ctaacttgtttaatggatcgttaccagcagaagtagggaatctggtcaatttagagatgctcaatctgaaagctaataatttcacaggagagtggccagtggaactgaataatcttactaaattggatgaacttaggataaccagtaacagctttgttgggaaactgcctaactttgagagttggaaaaacctccggaagctagaaattgaaggttctggatttgaaggaccactacccccaagtttttctgttttgagcagtttggaagaactaagaatcagtgacctcaacggaggtgcttcagaatttccatcacttacaaacttgacgagtatgactaaattggttttgagaagctgtaatatacatggaaatattcatgattctgtagctgaaatggtcaacttacggtttttagatctaagtttcaacaatcttgaaggaggaattgcaaatctcgagcacgtgactcagatggaggccacgtatctgactggcaatgcttttgttggacaaattccaaattggcttactagtcgagataccagaaatgtgatagacctttcctacaataaatttgatgaaagctctgaaccaggttcctgtcgggacaacctaaacttattcagaagcttcaaggtcgagaattttgtagagcgcgggaagtgcttctcagccagtccgtgttcagaggacaagtactcattgcacataaattgtggtggaggaaacgtaactgttggaaacactacttatatagcagatgaagactccgcaagtgctgcaaaatttgtttactggaaagggaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="42629" stop="47739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42929" g_stop="42989" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42990" i_stop="44751" i_length="1762">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44752" g_stop="44823" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="133" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44824" i_stop="44923" i_length="100">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44924" g_stop="44992" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="202" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44993" i_stop="45065" i_length="73">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45066" g_stop="45137" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="274" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45138" i_stop="45243" i_length="106">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45244" g_stop="45315" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="346" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45316" i_stop="45407" i_length="92">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45408" g_stop="45479" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45480" i_stop="45765" i_length="286">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45766" g_stop="45834" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="487" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45835" i_stop="46279" i_length="445">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46280" g_stop="46345" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="553" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46346" i_stop="46711" i_length="366">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46712" g_stop="46777" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="619" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46778" i_stop="46867" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46868" g_stop="46903" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="655" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="46904" i_stop="46988" i_length="85">
            <donor d_prob="0.694" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="46989" g_stop="47029" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="696" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="47030" i_stop="47320" i_length="291">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="47321" g_stop="47439" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="815" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E738651" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42929" e_stop="42989"/>
          <exon e_start="44752" e_stop="44823"/>
          <exon e_start="44924" e_stop="44992"/>
          <exon e_start="45066" e_stop="45137"/>
          <exon e_start="45244" e_stop="45315"/>
          <exon e_start="45408" e_stop="45479"/>
          <exon e_start="45766" e_stop="45834"/>
          <exon e_start="46280" e_stop="46345"/>
          <exon e_start="46712" e_stop="46777"/>
          <exon e_start="46868" e_stop="46903"/>
          <exon e_start="46989" e_stop="47029"/>
          <exon e_start="47321" e_stop="47439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCTGTATGTCTTCCTTACTCTTCTATTTCCTAACTGATTTTTCACAAGTCAATTTACTGTTTGTATTGTGTGGAAGATGTGATCGTGAGTTAAAAGTGAAATGAAGCTTAAGAATAGAATGGAGAATTGCAGATGGTTGTTTACTGTTTAGGGAGTAGACTATGAAAATCCAAAATGTGAGACTGAGTAAGCTGTATTTGCAAGGTGACCATGTATAGATGTTTCGTTTGGTACTTTTCTTTTAGCTGTGGTGTTCAGGCACGCTTGCACATATCTCAATCAGTCCTCATGATAGCTTACTACATCCCACAAGCACATGTGCCAATAAGCCTGTCGACCTAGGTTAGAGCAGATGAGCTCACATTGAGTGTTGTTGCTGAGTTTCAAATTGTTGCTCCTATATCTTAACCATTCAACTATCTCCTTGGGGGCACAATGCTATGTCTGATACACTCCTATATCTTAACCATTCTACTATCTCTTGGGGACAATGCTTTGTCTGGTACATTGGGGTACTATTGAAAGGAGAAGTAAGGCAAGAGATATAGGATACGGTTCCAGGTATTAAGGCTATGTAAGTGTACTTCCAATGAAGGGAAAGTGATACAATTTTGAGTCAAGTGAGGATGTTTTGATCAAAATTGTTTGAAAACAAGGTCAATATTGTGGGTTTTGAGAGCCAACCATTGTTGCCTGGAGACCTGTGAGCCTCATTTTATGCTAAGGACTAACTCTGAGGTGGAAATGGTTCTTAGTTGTGTTTGGTTGAGATTCTAGTTTAAGCACCTTTGTAGGATGCAGTTCTTTGCAAGGTCCCATCATTAGGAAAGGCCGTGGTGTGGAGGTTATTCTTAATGATAAGAGAGTTATGCTTTCATAATTGGTCACCGTCCATCAAGATAGGAGGAATAAGTCATAGCTTATAACTGTCATCAATGAAGGCATGCTGATTTTGATAATAAATGCATCTCTGTAGTCTTTTAGAAATCAAGAAGTGCAATAATTCAAATTGCTTCTGAGGCTATTTATAAGTGAGAAGCAAGACACTTGTACAGTGTACCTTCTTGGAAGTTAAGCGTATAATTTTAGGATGAAACACTAAAATAGCTAACATATGGAAATTTATTATTTGTAACAGCAAAACTGCAAACTGACTCTACTGCTTTCAATATCATATATACAACAATAACATACTTAATTCCAAAAATTCTTTCAAAACATTGTATGTACTTGAATAAAGATGTTAGAAATAGAAAATGAAATAGAGAGAATGAAAAAGAAAAACAAAAAATAATTTTTTTGACAGGATGAGAGAAAAGAATTGAAATTATTGTCAACTTAGAAGTGGAAAAGAAGAAGAAACACACAGAAGGAGAAGAAAAATAAGAAAGAAGCAAATCTACAATAAACAGAATAGAAGAAGAGTCGTAATGAACCCAAGAAGAAGTAGAAAGAGACAACGAAGAGATCACTAAGCATATGAAGAGAGGAGCCCTAGTACTCAAATGAAAAAAAAAAGTTCTTTTTATCCCCCTTTTTCATTTTTAAAAATCATGCCTGCGGATTGCTTTGCGTGTTACTGCTTTAGGCAAATGCTTCTTTAAGGTTGTGTTACTTCACCCATGCTTAGCAAGGACACCTCTTCCAATTGCTTAATCACTTTAAATGAATGAGGGTTTGCTTTAAAACATTGTGTGTTTTTACTAGAGCAGATCAAGTGTGAGCTGCGTTTGATTCTAAATTCTATGAACTTTGATTGTTGCAGCAATCTGAAAGCTAATAATTTCACAGGAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACTGTGAGTGCACTTGAATAGTCATCTGAGGATGAGATTTCTTAGTCTTCTTCCACATATGTTAAGTTGAATTCTTGGCTTTCCTCTTTTGGCATCAACACAGTAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCTGTGAGTATTTTCATTTAGTATATTTATACAAGTTAGAAATTTCCAGTAGAATTAGTATATGCTCTTTTGACAGAGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACTGTAAGTTTACGCTTTATATGAAAAGTTTATTTTGCTTTTTGCAATGTTCTTATGATTAAGCATAGTAGAAATCAAGATAATTAAGGCTCAGATGATGCATATACAGAAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACTAAATTGTGAGTACTTGATGATTTGGGAATTGCAAATGGAATTTCCAATACATCCTTTATCAAGGAAAGTTAATTATCTGAAACTGTGTTTACTGCAGGGTTTTGAGAAGCTGTAATATACATGGAAATATTCATGATTCTGTAGCTGAAATGGTCAACTTACGGTTTTTGTAATTCCACTTCTTTTCCTTCTACTAGCCTACTCTTTTTGAATGGGAGAGGTCAATGGGTCATTGAATCTTGAAGAGATGCAAACAACATACCTCACTTTCGCTGAATGTACCAATTTTATTCTTTCTTGAAACAAAATGATCTTTACAAAAATGTCATCGGAGCTTTTGTTTACTCTATCCTTTATCTAAACTTAATTAAGCTTTTAACAATTGTGTGATAGTTTGTACAGCCAGTGGAATTGAACATTGTTTTGAGTTCGACTCTGTTTATTGGTCATTGCAGAGATCTAAGTTTCAACAATCTTGAAGGAGGAATTGCAAATCTCGAGCACGTGACTCAGATGGAGGCCACGTAAGTCAAAACAACATGAAGATTCCTACAATTTTATGTGGAAATATTTCTTTTGCATCTCTGTTTCATTATTAGTAGTCTTAGTATATGACTGTTGATGGCTCATCCATCAATCTTCTGTATTCTTCCAAATGCTCCAGCCCTTTACTTTCGTTTGAAGAAACGAAGAAAATTGCTTCAATGACAGAAACAGTCTTAGATGGCAAATGCCTTTACATGATATTTCTTATTTTTTTCCCACAAATTTCTGAGATTCTGATAGTTTCTTTTGATAGATCAGTAGTTTTCTCTAGGTGAGCTGCACAGAAAAATGAGCCTTCATTTGATCGGCAATCTCTTTCCATTGTTGTGTGTAGATGAGTTCATGCTCTTGAAAATGTAATGCAGATATTGCATTTTCAAATTTGTGATCTCCTCCTTAAATCAGATATTTTCTGCTTGCCAGGTATCTGACTGGCAATGCTTTTGTTGGACAAATTCCAAATTGGCTTACTAGTCGAGATACCAGAAAGTAAGTGTACTTCTTTGTCTTGCTTTTGCATATACACTAGTCATTCTTTTGAACTCAATTTAAAAAAGGACATGTATAACAAGGTGAACATTAAAGGTTACAACCAAAAATGTGGTTGCTCACATAGAGAATCAGATTAAAAAGTCATTCATAGATACCTAGTCCAGAACTTGAATTCTCGAGTGAGGAACAACGATAGCTTTGTGTAAATTTGTTTGATGGGCAATAAACAAAGATATTGAGATTTAATTAACTGATTTGTCATTAATTTCATTGCATATAAATCTATTTTCTCTAAGTAAAGGCCTCTCATTAGAGTGGAAGTACTTGATGAGCTCTTAACCATGTCGGATATCTTTGATGCAGTGTGATAGACCTTTCCTACAATAAATTTGATGAAAGCTCTGAACCAGGTTCCTGTCGGGACAACCTGTATGATCCTTGTGTCTCTTACACTTTCTCCTATCTTCTTTTATGCATATATGGTTCAGAATTCCATGTTTGGTTTTCTTTTCTTATCAGAAACTTATTCAGAAGCTTCAAGGTCGAGAATTTTGTGTAAGTGTTAAATGTCAAACAAACTGTTGATTATTGTTCTTTGAAAACGACTTGTCCTCTCTGAGACCTCTTTCAACTACTTCAGAGAGCGCGGGAAGTGCTTCTCAGCCAGTCCGTGTTCAGAGGGTGAGTACTCACTCTTTGAGCAGAATTGTACTCTCTCATATAAATCTTTTGTTTGATATTGTTCCATTGCGCAGGACTTACCAGCTTCTTGTTGACAATCAATAGACATGAGTAGGAAGGCATAATTTGGTTACTTTTGTAAACTAGTTAGGTCATGGCATAATTTGGTTACTTTTGTAAACTAGTTAGGTCATAAAGAACATTTTAGCACTGTACAGTTTCTATGATAATCAGAACTGAACAGTTTTATCATTGTCTTATATTAACCTATCTCTGGTTTGTATATTGCAGACAAGTACTCATTGCACATAAATTGTGGTGGAGGAAACGTAACTGTTGGAAACACTACTTATATAGCAGATGAAGACTCCGCAGGTGCTGCAAAATTTGTTTACTGGAAAGGGAACTGG</genome_strand>
        <mrna_strand>CTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTGAAAGCTAATAATTTCACAGGAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACT....................................................................................................TAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCT.........................................................................AGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACT..........................................................................................................AAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACTAAATT............................................................................................GGTTTTGAGAAGCTGTAATATACATGGAAATATTCATGATTCTGTAGCTGAAATGGTCAACTTACGGTTTTT..............................................................................................................................................................................................................................................................................................AGATCTAAGTTTCAACAATCTTGAAGGAGGAATTGCAAATCTCGAGCACGTGACTCAGATGGAGGCCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTGACTGGCAATGCTTTTGTTGGACAAATTCCAAATTGGCTTACTAGTCGAGATACCAGAAA..............................................................................................................................................................................................................................................................................................................................................................................TGTGATAGACCTTTCCTACAATAAATTTGATGAAAGCTCTGAACCAGGTTCCTGTCGGGACAACCT..........................................................................................AAACTTATTCAGAAGCTTCAAGGTCGAGAATTTTGT.....................................................................................AGAGCGCGGGAAGTGCTTCTCAGCCAGTCCGTGTTCAGAGG...................................................................................................................................................................................................................................................................................................ACAAGTACTCATTGCACATAAATTGTGGTGGAGGAAACGTAACTGTTGGAAACACTACTTATATAGCAGATGAAGACTCCGCAAGTGCTGCAAAATTTGTTTACTGGAAAGGGAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473320" ref_strand="+" ref_description="SGN-E473320 [cSTB-31-P12]">
      <seq>tcccggggctggtggaattccgcacgaggattcagaagctttaaggttgagaattttgtagagcgcggaaagtgcttctcagccagtccgtgttcagaggacaagtactcattgcacataaattgtggtggaggaaacgtaactgttggaaacactacttatgtagcagatgaagactcagcaggtgctgcaaaatttgttaactggaaagggaactggggaaccagcagtacaggacatttctgggataccaacgtatcgttgaatgaccacaaagcaaaaaatgtatctgctatcaagggagatgaatctcaactttacatgacagctcacctctcccctttatctatgacttactttggacgttgcttagcaaatggaaactacactttgacacttcatttcgcagaaatagtttacagagacaaccaatctttccaaagtcttggaagacgaatatttgatgtatacatacaggacaaattgatgtttaaagattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="46682" stop="48016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46868" g_stop="46903" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="59" r_length="36" r_score="0.806"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46904" i_stop="46988" i_length="85">
            <donor d_prob="0.694" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46989" g_stop="47029" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="100" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47030" i_stop="47320" i_length="291">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47321" g_stop="47697" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="477" r_length="377" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47698" i_stop="47762" i_length="65">
            <donor d_prob="0.385" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47763" g_stop="47788" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="503" r_length="26" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E473320" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46868" e_stop="46903"/>
          <exon e_start="46989" e_stop="47029"/>
          <exon e_start="47321" e_stop="47697"/>
          <exon e_start="47763" e_stop="47788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTATTCAGAAGCTTCAAGGTCGAGAATTTTGTGTAAGTGTTAAATGTCAAACAAACTGTTGATTATTGTTCTTTGAAAACGACTTGTCCTCTCTGAGACCTCTTTCAACTACTTCAGAGAGCGCGGGAAGTGCTTCTCAGCCAGTCCGTGTTCAGAGGGTGAGTACTCACTCTTTGAGCAGAATTGTACTCTCTCATATAAATCTTTTGTTTGATATTGTTCCATTGCGCAGGACTTACCAGCTTCTTGTTGACAATCAATAGACATGAGTAGGAAGGCATAATTTGGTTACTTTTGTAAACTAGTTAGGTCATGGCATAATTTGGTTACTTTTGTAAACTAGTTAGGTCATAAAGAACATTTTAGCACTGTACAGTTTCTATGATAATCAGAACTGAACAGTTTTATCATTGTCTTATATTAACCTATCTCTGGTTTGTATATTGCAGACAAGTACTCATTGCACATAAATTGTGGTGGAGGAAACGTAACTGTTGGAAACACTACTTATATAGCAGATGAAGACTCCGCAGGTGCTGCAAAATTTGTTTACTGGAAAGGGAACTGGGGAACCAGCAGTACAGGGCATTTCTGGGATACCGACGTATCGTTGGATGACCACAAAGCAAAAAATGTATCTGCTATCAAGGGAGATGAATCTCAACTTTACATGACAGCTCACCTCTCCCCTTTATCTATGACTTACTTTGGACGTTGCTTAGCAAATGGAAACTACACTTTGACACTTCATTTTGCAGAAATAGTTTACAGAGACAACCAATCTTTCCGAAGTCTTGGAAAACGGATATTTGATATATACATACAGGTCAGAGAATTAGATACAGTAAAATATCCAATTAGCTGCAGCTGATTTAGTTTAAATGAATGCAGGACAAATTGAAGTTCAAAGATTTTGA</genome_strand>
        <mrna_strand>ACGAGGATTCAGAAGCTTTAAGGTTGAGAATTTTGT.....................................................................................AGAGCGCGGAAAGTGCTTCTCAGCCAGTCCGTGTTCAGAGG...................................................................................................................................................................................................................................................................................................ACAAGTACTCATTGCACATAAATTGTGGTGGAGGAAACGTAACTGTTGGAAACACTACTTATGTAGCAGATGAAGACTCAGCAGGTGCTGCAAAATTTGTTAACTGGAAAGGGAACTGGGGAACCAGCAGTACAGGACATTTCTGGGATACCAACGTATCGTTGAATGACCACAAAGCAAAAAATGTATCTGCTATCAAGGGAGATGAATCTCAACTTTACATGACAGCTCACCTCTCCCCTTTATCTATGACTTACTTTGGACGTTGCTTAGCAAATGGAAACTACACTTTGACACTTCATTTCGCAGAAATAGTTTACAGAGACAACCAATCTTTCCAAAGTCTTGGAAGACGAATATTTGATGTATACATACAG.................................................................GACAAATTGATGTTTAAAGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244461" ref_strand="+" ref_description="SGN-E244461 [cLEF-3-D3]">
      <seq>ggaattcggcacgaggcgggaagtgcttctcagccagtccgtgttcagaggacaagtactcattgcacataaattgtggtggaggaaacgtaactgttggaaacactacttatatagcagatgaagactccgcaggtgctgcaaaatttgtttactggaaagggaactggggaaccagcagtacagggcatttctgggataccgacttatcgttggatgaccacaaagcaaaaaatgtatctgctatcaagggagatgaatcttaactttacatgacagctcacctctcccctttagctatgacttactttggacgttgcttagcaaatggaaactacactttgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="46682" stop="47917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46977" g_stop="47029" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47030" i_stop="47320" i_length="291">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47321" g_stop="47617" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="348" r_length="297" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E244461" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46977" e_stop="47029"/>
          <exon e_start="47321" e_stop="47617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTACTTCAGAGAGCGCGGGAAGTGCTTCTCAGCCAGTCCGTGTTCAGAGGGTGAGTACTCACTCTTTGAGCAGAATTGTACTCTCTCATATAAATCTTTTGTTTGATATTGTTCCATTGCGCAGGACTTACCAGCTTCTTGTTGACAATCAATAGACATGAGTAGGAAGGCATAATTTGGTTACTTTTGTAAACTAGTTAGGTCATGGCATAATTTGGTTACTTTTGTAAACTAGTTAGGTCATAAAGAACATTTTAGCACTGTACAGTTTCTATGATAATCAGAACTGAACAGTTTTATCATTGTCTTATATTAACCTATCTCTGGTTTGTATATTGCAGACAAGTACTCATTGCACATAAATTGTGGTGGAGGAAACGTAACTGTTGGAAACACTACTTATATAGCAGATGAAGACTCCGCAGGTGCTGCAAAATTTGTTTACTGGAAAGGGAACTGGGGAACCAGCAGTACAGGGCATTTCTGGGATACCGACGTATCGTTGGATGACCACAAAGCAAAAAATGTATCTGCTATCAAGGGAGATGAATCTCAACTTTACATGACAGCTCACCTCTCCCCTTTATCTATGACTTACTTTGGACGTTGCTTAGCAAATGGAAACTACACTTTGACAC</genome_strand>
        <mrna_strand>GGAATTCGGCA-CGAG-GCGGGAAGTGCTTCTCAGCCAGTCCGTGTTCAGAGG...................................................................................................................................................................................................................................................................................................ACAAGTACTCATTGCACATAAATTGTGGTGGAGGAAACGTAACTGTTGGAAACACTACTTATATAGCAGATGAAGACTCCGCAGGTGCTGCAAAATTTGTTTACTGGAAAGGGAACTGGGGAACCAGCAGTACAGGGCATTTCTGGGATACCGACTTATCGTTGGATGACCACAAAGCAAAAAATGTATCTGCTATCAAGGGAGATGAATCTTAACTTTACATGACAGCTCACCTCTCCCCTTTAGCTATGACTTACTTTGGACGTTGCTTAGCAAATGGAAACTACACTTTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262132" ref_strand="+" ref_description="SGN-E262132 [cLEG-58-B11]">
      <seq>atcagaaaaagaagatcctaattgtagctggagcagtgacgtcttctttagctctcgttctgatgattttctttgttgcttggaagaaaagaagaaacaggaaattgatggaacaagaattaagaggactagatctgcaaactggtatatttactttcagacaaattaaagctgccacaagtaactttgattctgcaaataagcttggtgaaggtggatttggatctgtctacaagggtactctagcagatggtactataattgctgtcaagcagctttcatccaagtcaagacaaaggaaccgtgaatttgtgaatgaaataagcatgatgtcaggcttacatcacccaaatctcgtccgactctacggatgttgtgttgagcggaaacaacttttactagtttatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="47991" stop="49471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48291" g_stop="48407" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48408" i_stop="48771" i_length="364">
            <donor d_prob="0.687" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48772" g_stop="48890" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="236" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48891" i_stop="48997" i_length="107">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48998" g_stop="49171" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="410" r_length="174" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E262132" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48291" e_stop="48407"/>
          <exon e_start="48772" e_stop="48890"/>
          <exon e_start="48998" e_stop="49171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAAAAAGAAGATCCTAATTGTAGCTGGAGCAGTGACGTCTTCTTTAGCTCTCGTTCTGATGATTTTCTTTGTTGCTTGGAAGAAAAGAAGAAACAGGAAATTGATGGAACAAGGTGATTCTAGACCTCAATTTTGGTTTATGCCTGACAAGTAGAATGTAATTAAAAAAAAATCTGTTGCATTATGGGTGATTCTTGGAATTGTATCAAAATGAAGTGACAAATTGAGTGGTTTTGCAAATTGAAGTACATGTTACTAGGTGTAATTATCAATTTGGAAGACTTCCTGCCACATTTAACTTAAATACTATCCAAATTCATGATTTCACTAGTTAAAGGTTGGGGAAAACAAGGGTGATGGATATGGGTTTGAAGGTGCAACTTTCCAGAATTTCTTGTATGCTTTTCAAGCTAAAATTTTCTTTTATCTATCTTGTGGGAGATAACATCCTAAACTTGTTCCTTTACTTTTGTGTAGAATTAAGAGGACTAGATCTGCAAACTGGTATATTTACTTTCAGACAAATTAAAGCTGCCACAAGTAACTTTGATTCTGCAAATAAGCTTGGTGAAGGTGGATTTGGATCTGTCTACAAGGTGTTCATATATACAAATTCTCATAATTCTTCTTTTCCCTCTCTGTGGAAATTCTACTGGATATTTCAGACAAATTATGCTCTTCATGAATTTTTTTTGATGCTCAGGGTACTCTAGCAGATGGTACTATAATTGCTGTCAAGCAGCTTTCATCCAAGTCAAGACAAGGGAACCGTGAATTTGTGAATGAAATAGGCATGATGTCAGGCTTACATCACCCAAATCTCGTCCGACTCTACGGATGTTGTGTTGAGCGGAACCAACTTTTACTAGTTTATGAG</genome_strand>
        <mrna_strand>ATCAGAAAAAGAAGATCCTAATTGTAGCTGGAGCAGTGACGTCTTCTTTAGCTCTCGTTCTGATGATTTTCTTTGTTGCTTGGAAGAAAAGAAGAAACAGGAAATTGATGGAACAAG............................................................................................................................................................................................................................................................................................................................................................................AATTAAGAGGACTAGATCTGCAAACTGGTATATTTACTTTCAGACAAATTAAAGCTGCCACAAGTAACTTTGATTCTGCAAATAAGCTTGGTGAAGGTGGATTTGGATCTGTCTACAAG...........................................................................................................GGTACTCTAGCAGATGGTACTATAATTGCTGTCAAGCAGCTTTCATCCAAGTCAAGACAAAGGAACCGTGAATTTGTGAATGAAATAAGCATGATGTCAGGCTTACATCACCCAAATCTCGTCCGACTCTACGGATGTTGTGTTGAGCGGAAACAACTTTTACTAGTTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250649" ref_strand="+" ref_description="SGN-E250649 [cLEG-7-L3]">
      <seq>tgacgtcttctttagctctcgttctgatgattttctttgttgcttggaagaaaagaagaaacaggaaattgatggaacaagaattaagaggactagatctgcaaactggtatatttactttcagacaaattaaagctgccacaagtaactttgattctgcaaataagcttggtgaaggtggatttggatctgtctacaaggtgttcatatatacaaattctcataattcttcttttccctctctgtggaaattctactggatatttcagacaaattatgctcttcatgaattttttttgatgctcagggtactctagcagatggtactataattgctgtcaagcagctttcatccaagtcaagacaagggaaccgtgaatttgtgaatgaaataggcatgatgtcaggcttacatcacccaaatctcgtccgactctacggatgttgtgttgagcggaaccaacttttactagtttatgagtacatggagaacaataacctttcccatgttttgtttggtaatgttattttttcatacttgattttgatatattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="48027" stop="49549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48327" g_stop="48407" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48408" i_stop="48771" i_length="364">
            <donor d_prob="0.687" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48772" g_stop="49249" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="559" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E250649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48327" e_stop="48407"/>
          <exon e_start="48772" e_stop="49249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTCTTCTTTAGCTCTCGTTCTGATGATTTTCTTTGTTGCTTGGAAGAAAAGAAGAAACAGGAAATTGATGGAACAAGGTGATTCTAGACCTCAATTTTGGTTTATGCCTGACAAGTAGAATGTAATTAAAAAAAAATCTGTTGCATTATGGGTGATTCTTGGAATTGTATCAAAATGAAGTGACAAATTGAGTGGTTTTGCAAATTGAAGTACATGTTACTAGGTGTAATTATCAATTTGGAAGACTTCCTGCCACATTTAACTTAAATACTATCCAAATTCATGATTTCACTAGTTAAAGGTTGGGGAAAACAAGGGTGATGGATATGGGTTTGAAGGTGCAACTTTCCAGAATTTCTTGTATGCTTTTCAAGCTAAAATTTTCTTTTATCTATCTTGTGGGAGATAACATCCTAAACTTGTTCCTTTACTTTTGTGTAGAATTAAGAGGACTAGATCTGCAAACTGGTATATTTACTTTCAGACAAATTAAAGCTGCCACAAGTAACTTTGATTCTGCAAATAAGCTTGGTGAAGGTGGATTTGGATCTGTCTACAAGGTGTTCATATATACAAATTCTCATAATTCTTCTTTTCCCTCTCTGTGGAAATTCTACTGGATATTTCAGACAAATTATGCTCTTCATGAATTTTTTTTGATGCTCAGGGTACTCTAGCAGATGGTACTATAATTGCTGTCAAGCAGCTTTCATCCAAGTCAAGACAAGGGAACCGTGAATTTGTGAATGAAATAGGCATGATGTCAGGCTTACATCACCCAAATCTCGTCCGACTCTACGGATGTTGTGTTGAGCGGAACCAACTTTTACTAGTTTATGAGTACATGGAGAACAATAACCTTTCCCATGTTTTGTTTGGTAATGTTATTTTTTCATACTTGATTTTGATATATTTTACT</genome_strand>
        <mrna_strand>TGACGTCTTCTTTAGCTCTCGTTCTGATGATTTTCTTTGTTGCTTGGAAGAAAAGAAGAAACAGGAAATTGATGGAACAAG............................................................................................................................................................................................................................................................................................................................................................................AATTAAGAGGACTAGATCTGCAAACTGGTATATTTACTTTCAGACAAATTAAAGCTGCCACAAGTAACTTTGATTCTGCAAATAAGCTTGGTGAAGGTGGATTTGGATCTGTCTACAAGGTGTTCATATATACAAATTCTCATAATTCTTCTTTTCCCTCTCTGTGGAAATTCTACTGGATATTTCAGACAAATTATGCTCTTCATGAATTTTTTTTGATGCTCAGGGTACTCTAGCAGATGGTACTATAATTGCTGTCAAGCAGCTTTCATCCAAGTCAAGACAAGGGAACCGTGAATTTGTGAATGAAATAGGCATGATGTCAGGCTTACATCACCCAAATCTCGTCCGACTCTACGGATGTTGTGTTGAGCGGAACCAACTTTTACTAGTTTATGAGTACATGGAGAACAATAACCTTTCCCATGTTTTGTTTGGTAATGTTATTTTTTCATACTTGATTTTGATATATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286780" ref_strand="+" ref_description="SGN-E286780 [cLES-14-N16]">
      <seq>tcaaaggaaccaatgtactccttgacaaagacctaaatccaaagatctcagactttggtctggccaaacttcatgacgaggagaaaacacatgtcaccaccagggttgctgggactataggttatatggcccctgaatatgcactctggggttatttaacacataaagcagatttatacagttttggagtggttgtattggaactcgttgctgggaagaacaacatgaaatatcatcctgatgagaattatgtttgtcttcttgattgggccctggttctacaaaaaaagggtaagtttttggagctagtagacccaaggttaggttcctattacgacaaggaggaggcgttgaggatgattaaagtggccttacgatgtactaatccatctccagcactaaggccaaacatgtctgcagtagtaaacatgcttgaaggtcgtttgaacgttgacgagtctaacatcgattcaagtggctacgatgatgaatttaattttcaaggtttaagagacaaatatgatgagatgcaagtaacttctagtgaaaaccaatcagtccttttttcaactggcacaaagggtactgatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="49340" stop="51106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49640" g_stop="49757" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49758" i_stop="50174" i_length="417">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50175" g_stop="50325" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="269" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50326" i_stop="50481" i_length="156">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50482" g_stop="50806" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="594" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E286780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49640" e_stop="49757"/>
          <exon e_start="50175" e_stop="50325"/>
          <exon e_start="50482" e_stop="50806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGAACCAATGTACTCCTTGACAAAGACCTAAATCCAAAGATCTCAGACTTTGGTCTGGCCAAACTTCATGACGAGGAGAAAACACATGTCACCACCAGGGTTGCTGGGACTATGTGAGCTTCTAAACTACTCTAATTGATTGATCAAATTTTAATTGTTCAAAATACTCCCTTTCGAATGTCATCCTTCCATTTAGGTCATATCAGTTAGTTGTATGTATCTTTTTTCTGAATTTAATCTTTACTCATTATAATTCCAAAAGGTACATAGCTAGCACCTTATTGATCCCAAGTGCTCAACAGATTATTAAGGTTACCTAAAATTTTAAGTTATTCTTCAAAGCTACCCGTCTTTAAAAAATCCGTGTTTTATATTACAACTACAGTAAACTAGTAGAGATTAACAATTGCTTCTACAATTACTTATGCTGTCCATTTTCACTTAGTGTTGAGGTATAGAGCATTAGTTTAAGCCTTTCAGGACGTTCCTGTTCATCAAGCTCGTATAACTTTGTTAGTTTGTTTTTGCAGAGGTTATATGGCCCCTGAATATGCACTCTGGGGTTATTTAACACATAAAGCAGATTTATACAGTTTTGGAGTGGTTGTATTGGAACTCGTTGCTGGGAAGAACAACATGAAATATCATCCTGATGAGAATTATGTTTGTCTTCTTGATTGGGTAAGAAACCAGCATCTCTTGGTATCAGTTCCATGAATAGTAAACATTTGAAGCACGTCTCAGTTGCTTGATGAGAAGTTCATTTTGTGTTGATCAAGTAGTATTTCAAAGAGTATCTTTCACAAGCTTTCCCATTTGATATTGTGCTTCTTTCAGGCCCTGGTTCTACAAAAAAAGGGTAAGTTTTTGGAGCTAGTAGACCCAAGGTTAGGTTCCTATTACGACAAGGAGGAGGCGTTGAGGATGATTAAAGTGGCCTTACGATGTACTAATCCATCTCCAGCACTAAGGCCAAACATGTCTGCAGTAGTAAACATGCTTGAAGGTCGTTTGAACGTTGACGAGTCTAACATCGATTCAAGTGGCTACGATGATGAATTTAATTTTCAAGGTTTAAGAGACAAATATGATGAGATGCAAGTAACTTCTAGTGAAAACCAATCAGTCCTTTTTTCAACTGGCACAAAGGGTACTGATCACT</genome_strand>
        <mrna_strand>TCAAAGGAACCAATGTACTCCTTGACAAAGACCTAAATCCAAAGATCTCAGACTTTGGTCTGGCCAAACTTCATGACGAGGAGAAAACACATGTCACCACCAGGGTTGCTGGGACTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTATATGGCCCCTGAATATGCACTCTGGGGTTATTTAACACATAAAGCAGATTTATACAGTTTTGGAGTGGTTGTATTGGAACTCGTTGCTGGGAAGAACAACATGAAATATCATCCTGATGAGAATTATGTTTGTCTTCTTGATTGG............................................................................................................................................................GCCCTGGTTCTACAAAAAAAGGGTAAGTTTTTGGAGCTAGTAGACCCAAGGTTAGGTTCCTATTACGACAAGGAGGAGGCGTTGAGGATGATTAAAGTGGCCTTACGATGTACTAATCCATCTCCAGCACTAAGGCCAAACATGTCTGCAGTAGTAAACATGCTTGAAGGTCGTTTGAACGTTGACGAGTCTAACATCGATTCAAGTGGCTACGATGATGAATTTAATTTTCAAGGTTTAAGAGACAAATATGATGAGATGCAAGTAACTTCTAGTGAAAACCAATCAGTCCTTTTTTCAACTGGCACAAAGGGTACTGATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222074" ref_strand="+" ref_description="SGN-E222074 [cLEL-36-G18](-)">
      <seq>aaaaaaagggtaagtttttggagctagtagacccaaggttaggttcctattacgacaagaaggaggcgttgaggatgattaaagtggccttacgatgtactaatccatctccagcactaaggccaaacatgtctgcagtagtaaacatgcttgaaggtcgtttgaacgttgacgagtctaacatcgattcaagtggctacgatgatgaatttaattttcaaggtttaagagacaaatatgatgagatgcaagtaacttctagtgaaaaccaatcagtccttttttcaactggcacaaagggtactgatcactcttcttctacctttccttctacatctacctctaaataaatctccctgtatgctcaatgttgtattatataagacaaaaaaagtatcaataataacaaacaagatgaagaggagttatagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="50195" stop="51229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50495" g_stop="50928" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="450"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E222074" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50495" e_stop="50928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGGGTAAGTTTTTGGAGCTAGTAGACCCAAGGTTAGGTTCCTATTACGACAAGGAGGAGGCGTTGAGGATGATTAAAGTGGCCTTACGATGTACTAATCCATCTCCAGCACTAAGGCCAAACATGTCTGCAGTAGTAAACATGCTTGAAGGTCGTTTGAACGTTGACGAGTCTAACATCGATTCAAGTGGCTACGATGATGAATTTAATTTTCAAGGTTTAAGAGACAAATATGATGAGATGCAAGTAACTTCTAGTGAAAACCAATCAGTCCTTTTTTCAACTGGCACAAAGGGTACTGATCACTCTTCTTCTACCTTTCCTTCTACATCTACCTCTAAATAAATCTCCCTGTATGCTCAATGTTGTATTATATAAGACAAAAAAAGTATCAATAATAACAAACAAGTTGAAGAGGAGTTATAGCAC</genome_strand>
        <mrna_strand>AAAAAAAGGGTAAGTTTTTGGAGCTAGTAGACCCAAGGTTAGGTTCCTATTACGACAAGAAGGAGGCGTTGAGGATGATTAAAGTGGCCTTACGATGTACTAATCCATCTCCAGCACTAAGGCCAAACATGTCTGCAGTAGTAAACATGCTTGAAGGTCGTTTGAACGTTGACGAGTCTAACATCGATTCAAGTGGCTACGATGATGAATTTAATTTTCAAGGTTTAAGAGACAAATATGATGAGATGCAAGTAACTTCTAGTGAAAACCAATCAGTCCTTTTTTCAACTGGCACAAAGGGTACTGATCACTCTTCTTCTACCTTTCCTTCTACATCTACCTCTAAATAAATCTCCCTGTATGCTCAATGTTGTATTATATAAGACAAAAAAAGTATCAATAATAACAAACAAGATGAAGAGGAGTTATAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427531" ref_strand="+" ref_description="SGN-E427531 [STM-48-L5]">
      <seq>cttatataatacaacattgagcatactctgaaacttatttagaggtagatgtagaaggaaaggtagaagaagagtgatcagtaccctttgtgtcagttgacaaaaagactgattggttttcactagaagttacctgcatctcatcatgtttgtctcttaaaccttgaaaattaaattcatcaccgtagccacttgaatcaaagttagactcatcgacgttcaaacgaccttcaagcatgttcaccactgcagacatgtttggccttagtgctggagatggattagtacatcgtaatgccactttaatcatcctcaacacctccttcttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="-" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="51178" stop="50247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50878" g_stop="50547" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="-" ref_id="SGN-E427531" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50878" e_stop="50547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATATAATACAACATTGAGCATACAGGGAGATTTATTTAGAGGTAGATGTAGAAGGAAAGGTAGAAGAAGAGTGATCAGTACCCTTTGTGCCAGTTGAAAAAAGGACTGATTGGTTTTCACTAGAAGTTACTTGCATCTCATCATATTTGTCTCTTAAACCTTGAAAATTAAATTCATCATCGTAGCCACTTGAATCGATGTTAGACTCGTCAACGTTCAAACGACCTTCAAGCATGTTTACTACTGCAGACATGTTTGGCCTTAGTGCTGGAGATGGATTAGTACATCGTAAGGCCACTTTAATCATCCTCAACGCCTCCTCCTTGTCG</genome_strand>
        <mrna_strand>CTTATATAATACAACATTGAGCATACTCTGAAACTTATTTAGAGGTAGATGTAGAAGGAAAGGTAGAAGAAGAGTGATCAGTACCCTTTGTGTCAGTTGACAAAAAGACTGATTGGTTTTCACTAGAAGTTACCTGCATCTCATCATGTTTGTCTCTTAAACCTTGAAAATTAAATTCATCACCGTAGCCACTTGAATCAAAGTTAGACTCATCGACGTTCAAACGACCTTCAAGCATGTTCACCACTGCAGACATGTTTGGCCTTAGTGCTGGAGATGGATTAGTACATCGTAATGCCACTTTAATCATCCTCAACACCTCCTTCTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223873" ref_strand="+" ref_description="SGN-E223873 [cLEL-19-C7](-)">
      <seq>ttaaagtggccttacaatgtactaatccatctccagcactaaggccaaacatgtctgcagtagtaaacatgcttgaaggtcgtttgaacgttgacgagtctaacatcgattcaagtggctacgatgatgaatttaattttcaaggtttaagagacaaatatgatgagatgcaagtaacttctagtgaaaaccaatcagtccttttttcaactggcacaaagggtactgatcactcttcttctacctttccttctacatctacctctaaataaatctccctgtatgctcaatgttgtattatataagacaaaaaaagtatcaataataacaaacaagatgaagaggagttatagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="50273" stop="51229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50573" g_stop="50928" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="371"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E223873" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50573" e_stop="50928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGTGGCCTTACGATGTACTAATCCATCTCCAGCACTAAGGCCAAACATGTCTGCAGTAGTAAACATGCTTGAAGGTCGTTTGAACGTTGACGAGTCTAACATCGATTCAAGTGGCTACGATGATGAATTTAATTTTCAAGGTTTAAGAGACAAATATGATGAGATGCAAGTAACTTCTAGTGAAAACCAATCAGTCCTTTTTTCAACTGGCACAAAGGGTACTGATCACTCTTCTTCTACCTTTCCTTCTACATCTACCTCTAAATAAATCTCCCTGTATGCTCAATGTTGTATTATATAAGACAAAAAAAGTATCAATAATAACAAACAAGTTGAAGAGGAGTTATAGCAC</genome_strand>
        <mrna_strand>TTAAAGTGGCCTTACAATGTACTAATCCATCTCCAGCACTAAGGCCAAACATGTCTGCAGTAGTAAACATGCTTGAAGGTCGTTTGAACGTTGACGAGTCTAACATCGATTCAAGTGGCTACGATGATGAATTTAATTTTCAAGGTTTAAGAGACAAATATGATGAGATGCAAGTAACTTCTAGTGAAAACCAATCAGTCCTTTTTTCAACTGGCACAAAGGGTACTGATCACTCTTCTTCTACCTTTCCTTCTACATCTACCTCTAAATAAATCTCCCTGTATGCTCAATGTTGTATTATATAAGACAAAAAAAGTATCAATAATAACAAACAAGATGAAGAGGAGTTATAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389636" ref_strand="+" ref_description="SGN-E389636 [TUS-4-L17](-)">
      <seq>ctggaggtgacttaactggtgaagtatgtcaccgggctgataattatcaccggaatgtcaaattatacgagaatctacttctcaatgtttttgatgtttagatgagggaaagctcacagaggaagttaaagaaattttggagcttcttaagtccacatggcgtaatttgggaatcacagaaaccatccactacacttgctatgcttgggtattattttgacaggtcgggagtcgaaaatacactgatatacagcgatatacatcagctgtataaatgggcccaaaaagcccccgtttgtattttgctactttgggccttaagccccttcgtctttttattattatttgttagactaggataggtggagaattgggcctaaagcccactaaaatatcaaatttatgtgttagtttaggacaggtcgggagccgattatacactgatatatagcgacatacatcagccgtatattgcgtattgcagcacaaatgggcccaaaagcctccaaaatttcagaaattgtattttgttactttgggcgtaagcccctttgtcttttactattttttgttagactaggacagttggaggactgggctaaagcccactaaaaactcacactgatgtgttagtttaggacaggtccggagccgaaaaatactctctatacagcggaaacatcagccatatatgggcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="59109" stop="62562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59409" g_stop="59529" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59530" i_stop="60277" i_length="748">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60278" g_stop="60379" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="223" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60380" i_stop="61781" i_length="1402">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61782" g_stop="62262" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="701" r_length="478" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E389636" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59409" e_stop="59529"/>
          <exon e_start="60278" e_stop="60379"/>
          <exon e_start="61782" e_stop="62262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGACTTAACTGGTGAAGTATGTCACCGGGCTGATAATTATCACCGGAATGTCAAATTATACGAGAATCTACTTCTCAATGTTTTTGATGTTTAGATGAGGGAAAGCTCACAGAGGTCAGTAAAACCCACTTGAATGTCATTCTCTCTAATTCTTGCCATTCTTGCTATGCCTTGTGGTGCCAGGATCAAGATGACCATCTTGTTTCTTACACTGGAAAGTAACACTCTTGGGATGTCACCTTTCTTTTAAAAGAAGCTTATATTCTTAAGGGTCACTGGATTTACAGTCTTGGTATGTTGTGTACTTAAATTTGTAATAGAGGGACATGATGAGTGAAGGTGTTAAAAAGGCATGAGCCGCAAAATCTCATGGATGGAAATCTTGAAAAACCTACAATCTCTTGGAATTCATGTAGACATAGCGAATGATAGGCCACAATAGAAAAGGTTTATATAGTTGGGACAATGTTTTAGTCATGTTAGTAGTAATTTCGGTCTTGTGATTTGTAGGAGTCCTTTAGTCTTATATGAGATTTATATGCATTTCAAAATATATAGTACTTCTGGAGCTTTATTACTATTATTATTATTATTATTATTTAATTATTATAATAATATAGGACTTAAGGAGCTTAAAAATGGAACGGTATGAATTATAATTAGGTAGGATTCATATAGCCGAGGCCCTACTTGCTTAGGGTTGAGGTCCAGTTGTTTTGTATGAACAAAATAACCTGTTCTCTGTGTATAATAGTAAAATCCTGAACAATTGAGCAATGGATGATGTTATGTGAGTACATTCCTTTGGAAATCAATTTATAGGTTTGAATGACCAATTATGAACTTCATCTTTTCCAAGCAGGAAGTTAAAGAAATTTTGGAGCTTCTTAAGTCCACATGGCGTAATTTGGGAATCACAGAAACCATCCACTACACTTGCTATGCTTGGGTATTATTTTGACAGGTATAAAATGACAAAAACGATCCTGGTTTTAGTCAGAGTTGCTTAAACATTACTACCATTTGCTTGACTACTAACCTGCTGATGGTATATCAATTGTTTGGACTAGATTTTACTTCTTTATCAGTTTTGAGCGATGACGGACCAAAAGGTCTTTGGAATGTGTGGCATAGCCTGCAATTTCCTATTTAGAAAAGAAACTGATATTTCTTGAATCTAGCTTGAAGTACCAGGAAAATCGTGTTTCGTTGCCTGAGTTACTAAAAGATTTGTGGAAGGCTTTGTTCTTTTTATGTTAGTTAGGTTTGCTGATTGTCCTCTTGGTGTACTTATTGGTCGACACTAACATTCAATGTCAGTTCACTTTTTTGAACAAAATGTTACTGGGAGTGATCAAGAGTGGCCATCACTTCAGTTTCTCATTTGTTTGAATGTCCTTGGGAGAGAGTTTTTGAATTTGGGAATGGGAACTCTATCCAATTTTGCCCCCAAGTTTTCTCCCCAAAACAACCCTAATTTCCTCATATTTTTAAGCTCTCTTCTCCTCAGGTCTTAGGGTTGGGCGGAATTGGCTTATGAAAAGAATAGCTTACAAAAAGGTTTCTTTTGGCTAGCCACTTTGACATTTGAGAGATTCTTGAACAAGTTCTCTAACTCTAAATTTTCGGGAAGTTCCTTGTCCGGGTTTTGTTTGGATATCTTGGTTGCTGCTCGAGTCGGAACTCATGTAGAAGAGGTCGCTGTCTCCTCACTCCCTTTTTATGAAGTTGCAAGCAATTAAGTCCCTTTCCCGGTCATGTCTAGAAATTATGGATTTGTGTCATACTTTGTTGATATTATATGCTGATTTGGTTCATGACTAAAATGTTCAGCTTCCTCTACTATCGTTTGGCTCAGTTACTACCGTTCTCAACTTTGTGAACTTTAGTTACCATTTATCCCTCCCTTACTAGTCGCTATTTGCTGTATGTTAGAAGGAAGATTTTGTTTACTTGTGCTCCTTTGAATTCAGTGATGTAGTTTTTCAGTCATAGGAAGCATGTCTCTGCCTGTCATTGCTTTCTGTTAATCATTGTCTAAATTAGTATGTATTCTCTTGTTTCATTTTTTAAATGTGTTTTAGGATAATTTCTTCAATTCTTAATGCGTAAAGAATCATGCTAAGCTTACTGTAATGTCTTCTTGTCCTTGGATGTCATCTCTTCGTTAATTGCTTAGGACACAAATGTTCGTCTCTTTAAATTATTAGTTGGATACTACATCACTTTATTTCTTTACTGTTGAAGTGTGGTATATGAGTCGTACGTTTTCTTTAATCCACTTAGGTTGATTGATAAAATACAATAGTATTATTATATGCTCTACAAAGAGGGTATGAAATTGATTTCACTAGTGTCTTGCACAGGTCGGGAGTCGAAAATACACTGATATACAGCGATATACATCAGCTGTATAAATGGGCCCAAAAAGCCCCCGTTTGTATTTTGCTACTTTGGGCCTTAAGCCCCTTCGTCTTTTTATTATTATTTGTTAGACTAGGATAGGTGGAGAATTGGGCCTAAAGCCCACTAAAATATCAAATTTATGTGTTAGTTTAGGACAGGTCGGGAGCCGATTATACACTGATATATAGCGACATACATCAGCCGTATATTGCGTATTGCAGCACAAATGGGCCCAAAAGCCTCCAAAATTTCAGAAATTGTATTTTGTTACTTTGGGCGTAAGCCCCTTTGTCTTTTACTATTTTTTGTTAGACTAGGACAGTTGGAGGACTGGGCTAAAGCCCACTAAAAACTCACACTGATGTGTTAGTTTAGGACAGGTCCGGAGCCGAAAAATACACTGATATACAGCGATATACATCAGCCATATATGGGGCCCAA</genome_strand>
        <mrna_strand>CTGGAGGTGACTTAACTGGTGAAGTATGTCACCGGGCTGATAATTATCACCGGAATGTCAAATTATACGAGAATCTACTTCTCAATGTTTTTGATGTTTAGATGAGGGAAAGCTCACAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTAAAGAAATTTTGGAGCTTCTTAAGTCCACATGGCGTAATTTGGGAATCACAGAAACCATCCACTACACTTGCTATGCTTGGGTATTATTTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGAGTCGAAAATACACTGATATACAGCGATATACATCAGCTGTATAAATGGGCCCAAAAAGCCCCCGTTTGTATTTTGCTACTTTGGGCCTTAAGCCCCTTCGTCTTTTTATTATTATTTGTTAGACTAGGATAGGTGGAGAATTGGGCCTAAAGCCCACTAAAATATCAAATTTATGTGTTAGTTTAGGACAGGTCGGGAGCCGATTATACACTGATATATAGCGACATACATCAGCCGTATATTGCGTATTGCAGCACAAATGGGCCCAAAAGCCTCCAAAATTTCAGAAATTGTATTTTGTTACTTTGGGCGTAAGCCCCTTTGTCTTTTACTATTTTTTGTTAGACTAGGACAGTTGGAGGACTGGGCTAAAGCCCACTAAAAACTCACACTGATGTGTTAGTTTAGGACAGGTCCGGAGCCGAAAAATACTCT-CTATACAGCG-GAAACATCAGCCATATAT-GGGCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389894" ref_strand="+" ref_description="SGN-E389894 [TUS-4-L17]">
      <seq>ctggaggtgacttaactggtgaagtatgtcaccgggctgataattatcaccggaatgtcaaattatacgagaatctacttctcaatgtttttgatgtttagatgagggaaagctcacagaggaagttaaagaaattttggagcttcttaagtccacatggcgtaatttgggaatcacagaaaccatccactacacttgctatgcttgggtattattttgacaggtcgggagtcgaaaatacactgatatacagcgatatacatcagctgtataaatgggcccaaaaagcccccgtttgtattttgctactttgggccttaagccccttcgtctttttattattatttgttagactaggataggtggagaattgggcctaaagcccactaaaatatcaaatttatgtgttagtttaggacaggtcgggagccgattatacactgatatatagcgacatacatcagccgtatattgcgtattgcagcacaaatgggcccaaaagcctccaaaatttcagaaattgtattttgttactttgggcgtaagcccctttgtcttttactattttttgttagactaggacagttggaggactgggctaaagcccactaaaaactcacactgatgtgttagtttaggacaggtccggagccgaaaatacactgatatacagcgatatacatcagccatatatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="59109" stop="62557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59409" g_stop="59529" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59530" i_stop="60277" i_length="748">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60278" g_stop="60379" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="223" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60380" i_stop="61781" i_length="1402">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61782" g_stop="62257" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="698" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E389894" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59409" e_stop="59529"/>
          <exon e_start="60278" e_stop="60379"/>
          <exon e_start="61782" e_stop="62257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGACTTAACTGGTGAAGTATGTCACCGGGCTGATAATTATCACCGGAATGTCAAATTATACGAGAATCTACTTCTCAATGTTTTTGATGTTTAGATGAGGGAAAGCTCACAGAGGTCAGTAAAACCCACTTGAATGTCATTCTCTCTAATTCTTGCCATTCTTGCTATGCCTTGTGGTGCCAGGATCAAGATGACCATCTTGTTTCTTACACTGGAAAGTAACACTCTTGGGATGTCACCTTTCTTTTAAAAGAAGCTTATATTCTTAAGGGTCACTGGATTTACAGTCTTGGTATGTTGTGTACTTAAATTTGTAATAGAGGGACATGATGAGTGAAGGTGTTAAAAAGGCATGAGCCGCAAAATCTCATGGATGGAAATCTTGAAAAACCTACAATCTCTTGGAATTCATGTAGACATAGCGAATGATAGGCCACAATAGAAAAGGTTTATATAGTTGGGACAATGTTTTAGTCATGTTAGTAGTAATTTCGGTCTTGTGATTTGTAGGAGTCCTTTAGTCTTATATGAGATTTATATGCATTTCAAAATATATAGTACTTCTGGAGCTTTATTACTATTATTATTATTATTATTATTTAATTATTATAATAATATAGGACTTAAGGAGCTTAAAAATGGAACGGTATGAATTATAATTAGGTAGGATTCATATAGCCGAGGCCCTACTTGCTTAGGGTTGAGGTCCAGTTGTTTTGTATGAACAAAATAACCTGTTCTCTGTGTATAATAGTAAAATCCTGAACAATTGAGCAATGGATGATGTTATGTGAGTACATTCCTTTGGAAATCAATTTATAGGTTTGAATGACCAATTATGAACTTCATCTTTTCCAAGCAGGAAGTTAAAGAAATTTTGGAGCTTCTTAAGTCCACATGGCGTAATTTGGGAATCACAGAAACCATCCACTACACTTGCTATGCTTGGGTATTATTTTGACAGGTATAAAATGACAAAAACGATCCTGGTTTTAGTCAGAGTTGCTTAAACATTACTACCATTTGCTTGACTACTAACCTGCTGATGGTATATCAATTGTTTGGACTAGATTTTACTTCTTTATCAGTTTTGAGCGATGACGGACCAAAAGGTCTTTGGAATGTGTGGCATAGCCTGCAATTTCCTATTTAGAAAAGAAACTGATATTTCTTGAATCTAGCTTGAAGTACCAGGAAAATCGTGTTTCGTTGCCTGAGTTACTAAAAGATTTGTGGAAGGCTTTGTTCTTTTTATGTTAGTTAGGTTTGCTGATTGTCCTCTTGGTGTACTTATTGGTCGACACTAACATTCAATGTCAGTTCACTTTTTTGAACAAAATGTTACTGGGAGTGATCAAGAGTGGCCATCACTTCAGTTTCTCATTTGTTTGAATGTCCTTGGGAGAGAGTTTTTGAATTTGGGAATGGGAACTCTATCCAATTTTGCCCCCAAGTTTTCTCCCCAAAACAACCCTAATTTCCTCATATTTTTAAGCTCTCTTCTCCTCAGGTCTTAGGGTTGGGCGGAATTGGCTTATGAAAAGAATAGCTTACAAAAAGGTTTCTTTTGGCTAGCCACTTTGACATTTGAGAGATTCTTGAACAAGTTCTCTAACTCTAAATTTTCGGGAAGTTCCTTGTCCGGGTTTTGTTTGGATATCTTGGTTGCTGCTCGAGTCGGAACTCATGTAGAAGAGGTCGCTGTCTCCTCACTCCCTTTTTATGAAGTTGCAAGCAATTAAGTCCCTTTCCCGGTCATGTCTAGAAATTATGGATTTGTGTCATACTTTGTTGATATTATATGCTGATTTGGTTCATGACTAAAATGTTCAGCTTCCTCTACTATCGTTTGGCTCAGTTACTACCGTTCTCAACTTTGTGAACTTTAGTTACCATTTATCCCTCCCTTACTAGTCGCTATTTGCTGTATGTTAGAAGGAAGATTTTGTTTACTTGTGCTCCTTTGAATTCAGTGATGTAGTTTTTCAGTCATAGGAAGCATGTCTCTGCCTGTCATTGCTTTCTGTTAATCATTGTCTAAATTAGTATGTATTCTCTTGTTTCATTTTTTAAATGTGTTTTAGGATAATTTCTTCAATTCTTAATGCGTAAAGAATCATGCTAAGCTTACTGTAATGTCTTCTTGTCCTTGGATGTCATCTCTTCGTTAATTGCTTAGGACACAAATGTTCGTCTCTTTAAATTATTAGTTGGATACTACATCACTTTATTTCTTTACTGTTGAAGTGTGGTATATGAGTCGTACGTTTTCTTTAATCCACTTAGGTTGATTGATAAAATACAATAGTATTATTATATGCTCTACAAAGAGGGTATGAAATTGATTTCACTAGTGTCTTGCACAGGTCGGGAGTCGAAAATACACTGATATACAGCGATATACATCAGCTGTATAAATGGGCCCAAAAAGCCCCCGTTTGTATTTTGCTACTTTGGGCCTTAAGCCCCTTCGTCTTTTTATTATTATTTGTTAGACTAGGATAGGTGGAGAATTGGGCCTAAAGCCCACTAAAATATCAAATTTATGTGTTAGTTTAGGACAGGTCGGGAGCCGATTATACACTGATATATAGCGACATACATCAGCCGTATATTGCGTATTGCAGCACAAATGGGCCCAAAAGCCTCCAAAATTTCAGAAATTGTATTTTGTTACTTTGGGCGTAAGCCCCTTTGTCTTTTACTATTTTTTGTTAGACTAGGACAGTTGGAGGACTGGGCTAAAGCCCACTAAAAACTCACACTGATGTGTTAGTTTAGGACAGGTCCGGAGCCGAAAAATACACTGATATACAGCGATATACATCAGCCATATATGGGG</genome_strand>
        <mrna_strand>CTGGAGGTGACTTAACTGGTGAAGTATGTCACCGGGCTGATAATTATCACCGGAATGTCAAATTATACGAGAATCTACTTCTCAATGTTTTTGATGTTTAGATGAGGGAAAGCTCACAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTAAAGAAATTTTGGAGCTTCTTAAGTCCACATGGCGTAATTTGGGAATCACAGAAACCATCCACTACACTTGCTATGCTTGGGTATTATTTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGAGTCGAAAATACACTGATATACAGCGATATACATCAGCTGTATAAATGGGCCCAAAAAGCCCCCGTTTGTATTTTGCTACTTTGGGCCTTAAGCCCCTTCGTCTTTTTATTATTATTTGTTAGACTAGGATAGGTGGAGAATTGGGCCTAAAGCCCACTAAAATATCAAATTTATGTGTTAGTTTAGGACAGGTCGGGAGCCGATTATACACTGATATATAGCGACATACATCAGCCGTATATTGCGTATTGCAGCACAAATGGGCCCAAAAGCCTCCAAAATTTCAGAAATTGTATTTTGTTACTTTGGGCGTAAGCCCCTTTGTCTTTTACTATTTTTTGTTAGACTAGGACAGTTGGAGGACTGGGCTAAAGCCCACTAAAAACTCACACTGATGTGTTAGTTTAGGACAGGTCCGGAGCCG-AAAATACACTGATATACAGCGATATACATCAGCCATATATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233487" ref_strand="+" ref_description="SGN-E233487 [cLED-9-E11]">
      <seq>tggaggtgacttaactggtgaagtatgtcaccgggctgataattatcaccggaatgtcaaattatacgagaatctacttctcaatgtttttgatgtttagatgagggaaagctcacagaggaagttaaagaaattttggagcttcttaagtccacatggcgtaatttgggaatcacagaaaccatccactacacttgctatgcttgggtattattttgacaggtcgggagtcgaaaatacactgatatacagcgatatacatcagctgtataaatgggcccaaaaagcccccgtttgtattttgctactttgggccttaagccccttcgtctttttattattatttgttagactaggataggtggagaattgggcctaaagcccactaaaatatcaaatttatgtgttagtttaggacaggtcgggagccgattatacactgatatatagcgacatacatcagccgtatattgcgtattgcagcacaaatgggcccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="59110" stop="62360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59410" g_stop="59529" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59530" i_stop="60277" i_length="748">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60278" g_stop="60379" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="222" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60380" i_stop="61781" i_length="1402">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61782" g_stop="62060" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="501" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E233487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59410" e_stop="59529"/>
          <exon e_start="60278" e_stop="60379"/>
          <exon e_start="61782" e_stop="62060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGTGACTTAACTGGTGAAGTATGTCACCGGGCTGATAATTATCACCGGAATGTCAAATTATACGAGAATCTACTTCTCAATGTTTTTGATGTTTAGATGAGGGAAAGCTCACAGAGGTCAGTAAAACCCACTTGAATGTCATTCTCTCTAATTCTTGCCATTCTTGCTATGCCTTGTGGTGCCAGGATCAAGATGACCATCTTGTTTCTTACACTGGAAAGTAACACTCTTGGGATGTCACCTTTCTTTTAAAAGAAGCTTATATTCTTAAGGGTCACTGGATTTACAGTCTTGGTATGTTGTGTACTTAAATTTGTAATAGAGGGACATGATGAGTGAAGGTGTTAAAAAGGCATGAGCCGCAAAATCTCATGGATGGAAATCTTGAAAAACCTACAATCTCTTGGAATTCATGTAGACATAGCGAATGATAGGCCACAATAGAAAAGGTTTATATAGTTGGGACAATGTTTTAGTCATGTTAGTAGTAATTTCGGTCTTGTGATTTGTAGGAGTCCTTTAGTCTTATATGAGATTTATATGCATTTCAAAATATATAGTACTTCTGGAGCTTTATTACTATTATTATTATTATTATTATTTAATTATTATAATAATATAGGACTTAAGGAGCTTAAAAATGGAACGGTATGAATTATAATTAGGTAGGATTCATATAGCCGAGGCCCTACTTGCTTAGGGTTGAGGTCCAGTTGTTTTGTATGAACAAAATAACCTGTTCTCTGTGTATAATAGTAAAATCCTGAACAATTGAGCAATGGATGATGTTATGTGAGTACATTCCTTTGGAAATCAATTTATAGGTTTGAATGACCAATTATGAACTTCATCTTTTCCAAGCAGGAAGTTAAAGAAATTTTGGAGCTTCTTAAGTCCACATGGCGTAATTTGGGAATCACAGAAACCATCCACTACACTTGCTATGCTTGGGTATTATTTTGACAGGTATAAAATGACAAAAACGATCCTGGTTTTAGTCAGAGTTGCTTAAACATTACTACCATTTGCTTGACTACTAACCTGCTGATGGTATATCAATTGTTTGGACTAGATTTTACTTCTTTATCAGTTTTGAGCGATGACGGACCAAAAGGTCTTTGGAATGTGTGGCATAGCCTGCAATTTCCTATTTAGAAAAGAAACTGATATTTCTTGAATCTAGCTTGAAGTACCAGGAAAATCGTGTTTCGTTGCCTGAGTTACTAAAAGATTTGTGGAAGGCTTTGTTCTTTTTATGTTAGTTAGGTTTGCTGATTGTCCTCTTGGTGTACTTATTGGTCGACACTAACATTCAATGTCAGTTCACTTTTTTGAACAAAATGTTACTGGGAGTGATCAAGAGTGGCCATCACTTCAGTTTCTCATTTGTTTGAATGTCCTTGGGAGAGAGTTTTTGAATTTGGGAATGGGAACTCTATCCAATTTTGCCCCCAAGTTTTCTCCCCAAAACAACCCTAATTTCCTCATATTTTTAAGCTCTCTTCTCCTCAGGTCTTAGGGTTGGGCGGAATTGGCTTATGAAAAGAATAGCTTACAAAAAGGTTTCTTTTGGCTAGCCACTTTGACATTTGAGAGATTCTTGAACAAGTTCTCTAACTCTAAATTTTCGGGAAGTTCCTTGTCCGGGTTTTGTTTGGATATCTTGGTTGCTGCTCGAGTCGGAACTCATGTAGAAGAGGTCGCTGTCTCCTCACTCCCTTTTTATGAAGTTGCAAGCAATTAAGTCCCTTTCCCGGTCATGTCTAGAAATTATGGATTTGTGTCATACTTTGTTGATATTATATGCTGATTTGGTTCATGACTAAAATGTTCAGCTTCCTCTACTATCGTTTGGCTCAGTTACTACCGTTCTCAACTTTGTGAACTTTAGTTACCATTTATCCCTCCCTTACTAGTCGCTATTTGCTGTATGTTAGAAGGAAGATTTTGTTTACTTGTGCTCCTTTGAATTCAGTGATGTAGTTTTTCAGTCATAGGAAGCATGTCTCTGCCTGTCATTGCTTTCTGTTAATCATTGTCTAAATTAGTATGTATTCTCTTGTTTCATTTTTTAAATGTGTTTTAGGATAATTTCTTCAATTCTTAATGCGTAAAGAATCATGCTAAGCTTACTGTAATGTCTTCTTGTCCTTGGATGTCATCTCTTCGTTAATTGCTTAGGACACAAATGTTCGTCTCTTTAAATTATTAGTTGGATACTACATCACTTTATTTCTTTACTGTTGAAGTGTGGTATATGAGTCGTACGTTTTCTTTAATCCACTTAGGTTGATTGATAAAATACAATAGTATTATTATATGCTCTACAAAGAGGGTATGAAATTGATTTCACTAGTGTCTTGCACAGGTCGGGAGTCGAAAATACACTGATATACAGCGATATACATCAGCTGTATAAATGGGCCCAAAAAGCCCCCGTTTGTATTTTGCTACTTTGGGCCTTAAGCCCCTTCGTCTTTTTATTATTATTTGTTAGACTAGGATAGGTGGAGAATTGGGCCTAAAGCCCACTAAAATATCAAATTTATGTGTTAGTTTAGGACAGGTCGGGAGCCGATTATACACTGATATATAGCGACATACATCAGCCGTATATTGCGTATTGCAGCACAAATGGGCCCAAAAG</genome_strand>
        <mrna_strand>TGGAGGTGACTTAACTGGTGAAGTATGTCACCGGGCTGATAATTATCACCGGAATGTCAAATTATACGAGAATCTACTTCTCAATGTTTTTGATGTTTAGATGAGGGAAAGCTCACAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTAAAGAAATTTTGGAGCTTCTTAAGTCCACATGGCGTAATTTGGGAATCACAGAAACCATCCACTACACTTGCTATGCTTGGGTATTATTTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGAGTCGAAAATACACTGATATACAGCGATATACATCAGCTGTATAAATGGGCCCAAAAAGCCCCCGTTTGTATTTTGCTACTTTGGGCCTTAAGCCCCTTCGTCTTTTTATTATTATTTGTTAGACTAGGATAGGTGGAGAATTGGGCCTAAAGCCCACTAAAATATCAAATTTATGTGTTAGTTTAGGACAGGTCGGGAGCCGATTATACACTGATATATAGCGACATACATCAGCCGTATATTGCGTATTGCAGCACAAATGGGCCCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201833" ref_strand="+" ref_description="SGN-E201833 [cLEC-11-L16]">
      <seq>aggaacagacgctttgtcagtgtacgtgagcaatgtaacctgcaattgtgatacccctgatggttattgtcatgtacaaagcatattactcaaaggacaagatcttgctggtgttcttcctccatccctggcgaagttaccaaatctcaccataattgatctctcatgcaactatttgagtggtacaattccccctgaatggacatcgatgaaactggaaaccatgtctcttatgctgaatcaactatctggaccaattccgaagtacttaggaaacatgacttcactagtttatatgagattggaaagtaacatgtttaatggaactgttccaaaagaactcggaggcatggttaatctacagattctcattcttagttttaataatctcacaggtcagctaccagaggagctcaataaactcactaatttgaaagaacttaggctgagaggtaacaacttcacaggaaaacttcctaacttagagagttttaaaacccttcaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="79145" stop="82853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79445" g_stop="79528" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79529" i_stop="81676" i_length="2148">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81677" g_stop="81748" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="156" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81749" i_stop="81856" i_length="108">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81857" g_stop="81925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81926" i_stop="82002" i_length="77">
            <donor d_prob="0.659" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82003" g_stop="82074" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="297" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82075" i_stop="82162" i_length="88">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82163" g_stop="82234" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="369" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82235" i_stop="82328" i_length="94">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82329" g_stop="82400" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="441" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82401" i_stop="82486" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82487" g_stop="82553" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="508" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E201833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79445" e_stop="79528"/>
          <exon e_start="81677" e_stop="81748"/>
          <exon e_start="81857" e_stop="81925"/>
          <exon e_start="82003" e_stop="82074"/>
          <exon e_start="82163" e_stop="82234"/>
          <exon e_start="82329" e_stop="82400"/>
          <exon e_start="82487" e_stop="82553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACAGACGCTTTGTCAGTGTACGTGAGCAATGTAACCTGCAATTGTGATACCCCTGATGGTTATTGTCATGTACAAAGCATGTAAGCCTTTCTTCCTCGCCTTTTTTTTTTTTATATATATATCTTCAGACTCCGCAATTTCCTTTCGTTGTTTTTTTTTTTAAAGTTAAAAAGGTGTGAATTAAGAAAGACAACTTTCACATGTAGTAAATAAAAAATTCATATTTGTATGCTATAGCAAAGTTTGCATAATTGCGCTCCATAACAAACATAGAAATTGTATAATTCGCTATACATATACAGTTGAAACAAATTGTATAAAACGAAGTGTATAAAACAAGAAAGAAAAAGACACTTGGGCAGAGAACTGTATAAAAACGAAGTCTATAAAACGAATTGTATTATTATAAGTGTATAGAACGATTATATACAATTTGAATTTGTATAAAATGAGAAAGAGAGAAAGACTAAAGAGACTTGACAAGGAATATACAATTGAATCGAATTGTATAAAACGAGAAAGAGAGAAATTAGATACAATTTGAAAATTGTATAAAACGAGAAAGAGAAAAAGGCAAAAGAAACTGGGCAGGAGAGTATTTTTATTATATAATTATAAGTGTATAGGACGAAAATATATGTACTTGCATGTGTATATACAATTTTCTCACGCTATATACAAACAGAAACACAATTTATACATTTCGCTTCTGTTTGTATAAGTGAGAAAGGCGAGGGTGACGAGCGAGATTTGGGAGAGTGGCGAGCGAGATCTGGAAGAAGGGAGAGAGGGGAACAAAAATATATGTATTTGTACAATTTTTTCTGCTTTATACAATTAGAAACAATTTTTATACACTTATGTTTGTATAAAAAGTGAGGAAGCGAGCGAGAGATTGGAGAAGAGTGGCGAGCGAGATATTTGGGAGAGAGGCGCGTGATAATTTTTTGCAAATGTTTGCTATGAAGCACAATTAAATCAAACCCTAGCTACTCAATTTATTTTAGATTATTAGTTTGCTATTATATACAATTTTCCCTTATAAAAGGGAAAAGGGTCAAAAAAATTCCTTTCTAACTATGTTTTATTGGTTTACTTTGTTCTCCCGTTAAAAATAAGTTATTTTTATCTTTGCTGTTAATAAGCTTAATAAATATATCCTTCCTTAGATACAAAGCCTCAAATTAATTAAAATTAAATTTCAATTTTACTTAAATTACTCAATTTTAATCCGACTCAATTCACTAGAAAAAAAATGAAATTTGTCTATGGTTGAATATGATACCATAAATATGAACTAGAGAGTATTTTTAATTAATTTTTTTCTTATTCTTAATATTGCACGAGGACCAAGTTTCTTTTTTTTTCCCAATTTTTTTTTGATATTTTCGTGCTCGTGATTATAAATAGGAGGCTTTGCCTTAATTTTTTACCATCGAAAATAAGCAAATATTTTCTCCTCTCTTATGCATCATTTTTCAAAAGGAAAAAGGTAAAAATGTCCAGTATGATCTTATAGTTTTTTGACTTATTAATAAAAAAAAACATGTTAGAATTTTCACAAAAAATTATCCGATTTGACATGGAATTTAAGAAAATAAAGAAAAATTTTGAATCTTGTGGTCCTCGAATACATAAAATTATCATTTAATCTTATAGCTTTAATCATGCCACGTGTGAAAAGTTAAAATTAAAACATTATCATAAAAGAAGAGCCAGGCAGTCCACAAATATTTGCACCTTGTGGTATTTTCATTAACTATTTGCACCTTGTGGGAAAATTACTAAGGAAGTCCTCAAATAGTTGGTTAGGATTTTTTTGCTTATACAAAATGCATTGTTATTTAGGATGTGGTTGGTCTGTTGGGAATGTTTTCTAGGAAAATAAAAACTTTGTTTTTAGTTATTTTCTTCTGTTTGATAGTTAAGTAAATAATGTTATCTTAAAAATAGTTATATATAATCTAGACAAATATTATCAAAGACAGGACAGAGCAGGAGTGAAGATGAATTGTGTTGGAGGATGAAGAGTACATATATAATGTCATTGTAAAACTTGTTTTCCCGACTTCCATAGTGAAAGTCTAATTTTCAAGGAGCTTGTTTTGCAATGTTCTTAAAAAATTTGACCGATGGAACATTAAGAGATTAATAAACATTTTTCAGACAATATTTTCCTCGTAACACATCTTTTTATAGTTTTGATAGTTTTTCCTATTATGTTACAGATTACTCAAAGGACAAGATCTTGCTGGTGTTCTTCCTCCATCCCTGGCGAAGTTACCAAATCTCACCATAATGTACCGTTAACTCACTTGAATCTATGAGTTCAAAACATGTAGCTTTCTTTTTTTAAGATAAAATATCATTATGATAAAAAAAAAACATTTTCACTGTTTGACCTACAGTGATCTCTCATGCAACTATTTGAGTGGTACAATTCCCCCTGAATGGACATCGATGAAACTGGAAACCATGTAAGCGCTCTGCGCCTGAAATACTTTAGGCATTACATTACAAGGTTGCGCGAATTTAAACTATGATGGTTTTTCAGGTCTCTTATGCTGAATCAACTATCTGGACCAATTCCGAAGTACTTAGGAAACATGACTTCACTAGTTTATATGTATGTCCTTTTGTCTTTCACTTCACATGCAAAGGATGGTAGTCCTTAATTAGTTTAAGATTTATTGAGCTGAACTGCAAAATTTCAGGAGATTGGAAAGTAACATGTTTAATGGAACTGTTCCAAAAGAACTCGGAGGCATGGTTAATCTACAGATTCTGTAAGGCCTTCCGGACTATACTCGTGACTTTAGATGAAAATTTTTGTGTTTTGACAATATTTTGACAAGCTAGTTGCTTTTTTGCTTTGTGCAGCATTCTTAGTTTTAATAATCTCACAGGTCAGCTACCAGAGGAGCTCAATAAACTCACTAATTTGAAAGAACTGTAAGTACCTCCGGATATACGTTTCCTCTAGGTCATATTGCATTTCCTGTTTATCTGAGTTCTTCCCATTTTTGACATCTATGCAGTAGGCTGAGAGGTAACAACTTCACAGGAAAACTTCCTAACTTAGAGAGTTTTAAAACCCTTCAAAGA</genome_strand>
        <mrna_strand>AGGAACAGACGCTTTGTCAGTGTACGTGAGCAATGTAACCTGCAATTGTGATACCCCTGATGGTTATTGTCATGTACAAAGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTCAAAGGACAAGATCTTGCTGGTGTTCTTCCTCCATCCCTGGCGAAGTTACCAAATCTCACCATAAT............................................................................................................TGATCTCTCATGCAACTATTTGAGTGGTACAATTCCCCCTGAATGGACATCGATGAAACTGGAAACCAT.............................................................................GTCTCTTATGCTGAATCAACTATCTGGACCAATTCCGAAGTACTTAGGAAACATGACTTCACTAGTTTATAT........................................................................................GAGATTGGAAAGTAACATGTTTAATGGAACTGTTCCAAAAGAACTCGGAGGCATGGTTAATCTACAGATTCT..............................................................................................CATTCTTAGTTTTAATAATCTCACAGGTCAGCTACCAGAGGAGCTCAATAAACTCACTAATTTGAAAGAACT......................................................................................TAGGCTGAGAGGTAACAACTTCACAGGAAAACTTCCTAACTTAGAGAGTTTTAAAACCCTTCAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545873" ref_strand="+" ref_description="SGN-E545873 [TUS-68-P4]">
      <seq>gtctcttatgctgaatcacctatctggaccaattccaaagtacttaggaaacatgacttcactagtttatatgagattggaaagtaatatgtttaatggaactgttccaaaagaactcggaggcatggttaatctacaggttctcattcttagttttaataatctcacaggtcagttaccagaggagctcaataaactcactaatttgaaagaacttaggctgagaggtaacaacttcacaggaaaacttcctaacttagagagttttaaaacccttcaaagattagagattcaagcttctggttttgaaggacctatatctccaatcatttctgtctcaactcaaatgatcgaattgagaatcactgatttgactggaggtgcttcagaatttccacagcttgggaatatgacgcgcctaactagattgatattgaggaattgcaatttatctgggaagattcctccttacataactaagatgcctaaattaaaacttttagatctaagtttcaacaagtttgaaggacagatcccaaatcttgagagtctaaaagagttggacttcttgtacctggtcggaaatcgacttactgggccaattccaggttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="81703" stop="84201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82003" g_stop="82074" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82075" i_stop="82162" i_length="88">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82163" g_stop="82234" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="144" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82235" i_stop="82328" i_length="94">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82329" g_stop="82400" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="216" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82401" i_stop="82486" i_length="86">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82487" g_stop="82555" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="285" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82556" i_stop="82644" i_length="89">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82645" g_stop="82716" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="357" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82717" i_stop="82788" i_length="72">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82789" g_stop="82860" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="429" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82861" i_stop="82968" i_length="108">
            <donor d_prob="0.897" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82969" g_stop="83040" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="501" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83041" i_stop="83490" i_length="450">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="83491" g_stop="83559" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="570" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="83560" i_stop="83857" i_length="298">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="83858" g_stop="83901" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="614" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E545873" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82003" e_stop="82074"/>
          <exon e_start="82163" e_stop="82234"/>
          <exon e_start="82329" e_stop="82400"/>
          <exon e_start="82487" e_stop="82555"/>
          <exon e_start="82645" e_stop="82716"/>
          <exon e_start="82789" e_stop="82860"/>
          <exon e_start="82969" e_stop="83040"/>
          <exon e_start="83491" e_stop="83559"/>
          <exon e_start="83858" e_stop="83901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTATGCTGAATCAACTATCTGGACCAATTCCGAAGTACTTAGGAAACATGACTTCACTAGTTTATATGTATGTCCTTTTGTCTTTCACTTCACATGCAAAGGATGGTAGTCCTTAATTAGTTTAAGATTTATTGAGCTGAACTGCAAAATTTCAGGAGATTGGAAAGTAACATGTTTAATGGAACTGTTCCAAAAGAACTCGGAGGCATGGTTAATCTACAGATTCTGTAAGGCCTTCCGGACTATACTCGTGACTTTAGATGAAAATTTTTGTGTTTTGACAATATTTTGACAAGCTAGTTGCTTTTTTGCTTTGTGCAGCATTCTTAGTTTTAATAATCTCACAGGTCAGCTACCAGAGGAGCTCAATAAACTCACTAATTTGAAAGAACTGTAAGTACCTCCGGATATACGTTTCCTCTAGGTCATATTGCATTTCCTGTTTATCTGAGTTCTTCCCATTTTTGACATCTATGCAGTAGGCTGAGAGGTAACAACTTCACAGGAAAACTTCCTAACTTAGAGAGTTTTAAAACCCTTCAAAGATTGTAAGCATATTCAAACCATTTGATGCATATAAAAGTGTTCAATAGCTAGATTTATGCAAGTTGTTTCAGACTTTATGCTTGGTTAACAGAGAGATTCAAGCTTCTGGTTTTGAAGGACCTATAGCTCCAATCATTTCTGTCTCAACTCAAATGATCGAATTGTGAGTTGTTCTCTTATGTGCTGTTCTCTTCTGTTTGGTTAGAATTTAAACTTTAATAATATGTCTGTACAGGAGAATCACTGATTTGACTGGAGGTGCTTCAGAATTTCCACAGCTTGGGAATATGACACGCCTAACTAGATTGTATGTAGTTCACGTGAAGTATGGATTTGTGCATTAATAGTTCGACTAACTTCCCCAGTCAATGGGAAGTGTTTTTATTTTCTTTTTCTGAAACTAATGTGATTGCAGGATATTGAGGAATTGCAATTTATCTGGGAAGATTCCTCCTTACATAACTAAGATGCCTAAATTAAAACTTCTGTAAGTCTGCTGTCTACCTTCACTCTGATATTTGTTCTTTCTTTCTTTCTTGATATACTTTTAGTTCTCGTTTCCCTTCATAGCTGTATTTAACAGAAGTCTTGCATGCCATCAATACGAGCCTTTTTATTGTTGTCTTGTGAATTCTGTTAATTTACAACCTCAGGAGACAGACAAAGGGTTCACAGGAATTGTGTATCTATCATGTGTTAGCATTTTTATAGGCCTTTTATGAAGACGGTATGCAGGTGAACTTCTCCCCAAGAGGAGATTCTAGGTTTGGTGGATGAATTGGAATCTTGTTTTAGAAAAATGTTACTTCATCACTTTTTGCAAATACTGTAAATTTACATGATGTTATTGTTATTAGCTTAGAATCTCAAGATATTAAAACGTCATTTGCATCCTTTTCCTTGTTTCTAGCTTAATTATGGCTTTCCTTTGCTGCAGAGATCTAAGTTTCAACAAGTTTGAAGGACAGATCCCAAATCTTGAGAGTCTAAAGAAGTTGGACTTCTTGTAAGTGACATAACATAAGGATGAAACATGTGATACTCAAATTCTTATTTTAACTAGCTTGCCAATTTGTCGACATTATATCCTCAACAATGCTAAGTTCTTTTTTCTAACAGAAAATACAATGAATACAATTTAAACCCTTGACATGGATGTGCAAGTTGCTGAGGGTTCAAAGCATGTTTGTTATCAAAGAAACTTAGTGTCTGACATTTTATAGACTTACTTGACCTTGATTCATTTATGTAATTTTGTTGTTCAAATTGATATCTCCAGTTGAATTGAAGTTGTTCTTTTCTAGGTACCTGGTAGGAAATCGACTTACTGGGCCAATTCCAGGTTGGG</genome_strand>
        <mrna_strand>GTCTCTTATGCTGAATCACCTATCTGGACCAATTCCAAAGTACTTAGGAAACATGACTTCACTAGTTTATAT........................................................................................GAGATTGGAAAGTAATATGTTTAATGGAACTGTTCCAAAAGAACTCGGAGGCATGGTTAATCTACAGGTTCT..............................................................................................CATTCTTAGTTTTAATAATCTCACAGGTCAGTTACCAGAGGAGCTCAATAAACTCACTAATTTGAAAGAACT......................................................................................TAGGCTGAGAGGTAACAACTTCACAGGAAAACTTCCTAACTTAGAGAGTTTTAAAACCCTTCAAAGATT.........................................................................................AGAGATTCAAGCTTCTGGTTTTGAAGGACCTATATCTCCAATCATTTCTGTCTCAACTCAAATGATCGAATT........................................................................GAGAATCACTGATTTGACTGGAGGTGCTTCAGAATTTCCACAGCTTGGGAATATGACGCGCCTAACTAGATT............................................................................................................GATATTGAGGAATTGCAATTTATCTGGGAAGATTCCTCCTTACATAACTAAGATGCCTAAATTAAAACTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTAAGTTTCAACAAGTTTGAAGGACAGATCCCAAATCTTGAGAGTCTAAAAGAGTTGGACTTCTT..........................................................................................................................................................................................................................................................................................................GTACCTGGTCGGAAATCGACTTACTGGGCCAATTCCAGGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356063" ref_strand="+" ref_description="SGN-E356063 [cLHT-7-E15]">
      <seq>tgctgaatcacctatctggaccaattccaaagtacttatgaaacatgacgttcctagttcatatgagattggaaagtaatatgttgaatggaactggtccaaaagaactcggaggcatggttaatctacaggttcttattcttaggtttaataatctcacaggtcacttaccagaggagctcagtaaactcactaatttgaaagaacttaagctgacaggtaacaacttcgcaggaaaactttctaacttagagagttttaaaacccttcaaagattagagattcaagcttctggttttgaaggacctatatctgcaatcatttctgactcaactcaaatgatcgaattgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="81711" stop="83020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82011" g_stop="82074" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82075" i_stop="82162" i_length="88">
            <donor d_prob="0.845" d_score="0.88"/>
            <acceptor a_prob="0.879" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82163" g_stop="82234" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="136" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82235" i_stop="82328" i_length="94">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82329" g_stop="82400" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="208" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82401" i_stop="82486" i_length="86">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82487" g_stop="82555" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="277" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82556" i_stop="82644" i_length="89">
            <donor d_prob="0.717" d_score="0.96"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82645" g_stop="82716" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="349" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82717" i_stop="82788" i_length="72">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82789" g_stop="82793" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="354" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E356063" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82011" e_stop="82074"/>
          <exon e_start="82163" e_stop="82234"/>
          <exon e_start="82329" e_stop="82400"/>
          <exon e_start="82487" e_stop="82555"/>
          <exon e_start="82645" e_stop="82716"/>
          <exon e_start="82789" e_stop="82793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAATCAACTATCTGGACCAATTCCGAAGTACTTAGGAAACATGACTTCACTAGTTTATATGTATGTCCTTTTGTCTTTCACTTCACATGCAAAGGATGGTAGTCCTTAATTAGTTTAAGATTTATTGAGCTGAACTGCAAAATTTCAGGAGATTGGAAAGTAACATGTTTAATGGAACTGTTCCAAAAGAACTCGGAGGCATGGTTAATCTACAGATTCTGTAAGGCCTTCCGGACTATACTCGTGACTTTAGATGAAAATTTTTGTGTTTTGACAATATTTTGACAAGCTAGTTGCTTTTTTGCTTTGTGCAGCATTCTTAGTTTTAATAATCTCACAGGTCAGCTACCAGAGGAGCTCAATAAACTCACTAATTTGAAAGAACTGTAAGTACCTCCGGATATACGTTTCCTCTAGGTCATATTGCATTTCCTGTTTATCTGAGTTCTTCCCATTTTTGACATCTATGCAGTAGGCTGAGAGGTAACAACTTCACAGGAAAACTTCCTAACTTAGAGAGTTTTAAAACCCTTCAAAGATTGTAAGCATATTCAAACCATTTGATGCATATAAAAGTGTTCAATAGCTAGATTTATGCAAGTTGTTTCAGACTTTATGCTTGGTTAACAGAGAGATTCAAGCTTCTGGTTTTGAAGGACCTATAGCTCCAATCATTTCTGTCTCAACTCAAATGATCGAATTGTGAGTTGTTCTCTTATGTGCTGTTCTCTTCTGTTTGGTTAGAATTTAAACTTTAATAATATGTCTGTACAGGAGAA</genome_strand>
        <mrna_strand>TGCTGAATCACCTATCTGGACCAATTCCAAAGTACTTATGAAACATGACGTTCCTAGTTCATAT........................................................................................GAGATTGGAAAGTAATATGTTGAATGGAACTGGTCCAAAAGAACTCGGAGGCATGGTTAATCTACAGGTTCT..............................................................................................TATTCTTAGGTTTAATAATCTCACAGGTCACTTACCAGAGGAGCTCAGTAAACTCACTAATTTGAAAGAACT......................................................................................TAAGCTGACAGGTAACAACTTCGCAGGAAAACTTTCTAACTTAGAGAGTTTTAAAACCCTTCAAAGATT.........................................................................................AGAGATTCAAGCTTCTGGTTTTGAAGGACCTATATCTGCAATCATTTCTGACTCAACTCAAATGATCGAATT........................................................................GAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214786" ref_strand="+" ref_description="SGN-E214786 [cLEC-79-M12]">
      <seq>ataaattgtggtggaaagagtgtgactattggggacactgtttacgaagcagatagagattcagcaggtgctgcaaaatttacttcctcgaaagagagctggggagccagcaacagtggatacttctgggataagattataacagcaaaagactacctggcgaataatatatctgccattaagggaaatgactctgaactgtacacgacagctcggctctcagctttatctctgacttactatggacgttgtttagcaaatggaaactacaccgtgacactgcactttgcagagattgttataagagacaatcgatctttccaaagtcttggaaaacggatatttgatgtctatattcagggtgagaggaagctcaaagattttgatattagaactgatgctggaggagttgataaacctttcacgataaagttcaatgcaactgtagcagacagcactctagaagtgcgctttcagtatgctgggaaaggaacagctgctctccctagaagaggaagctatggccctttagtttctgccatctnctttgaagctaatttcaagcccccctctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="84735" stop="85963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85035" g_stop="85394" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85395" i_stop="85465" i_length="71">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85661" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="556" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85662" i_stop="85847" i_length="186">
            <donor d_prob="0.383" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85848" g_stop="85867" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="576" r_length="20" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E214786" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85035" e_stop="85394"/>
          <exon e_start="85466" e_stop="85661"/>
          <exon e_start="85848" e_stop="85867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATTGTGGTGGAAAGAGTGTGACTATTGGGGACACTGTTTACGAAGCAGATAGAGATTCAGCAGGTGCTGCAAAATTTACTTCCTCGAAAGAGAGCTGGGGAGCCAGCAACAGTGGATACTTCTGGGATAAGATTATAACAGCAAAAGACTACCTGGCGAATAATATATCTGCCATTAAGGGAAATGACTCTGAACTGTACACGACAGCTCGGCTCTCAGCTTTATCTCTGACTTACTATGGACGTTGTTTAGCAAATGGAAACTACACCGTGACACTGCACTTTGCAGAGATTGTTATAAGAGACAATCGATCTTTCCAAAGTCTTGGAAAACGGATATTTGATGTCTATATTCAGGTCAATTAACATTCATCCGAGTATTAAGTCAAGGTTTAGGTGCTGTTTGCTCACAATTTAACTGAATGCAGGGTGAGAGGAAGCTCAAAGATTTTGATATTAGAACTGATGCTGGAGGAGTTGATAAACCTTTCACGATAAAGTTCAATGCAACTGTAGCAGACAGCACTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTAGTAATTATACTATATCTCTTTTTACAAAGGACACCCTTGAACACACTGAACGATTAATTCTATTACTTTATTCTTAGAGAGCCAAAGGATAGACTTGAATTATTTGCTCAATTACTTAATATTGAAGACAAACAAACAAATGCAAGTGCATTTTATACTCTTACTCATATTTTTTCTGTATCATAGATTTCAAGCCCCCTCCTGAT</genome_strand>
        <mrna_strand>ATAAATTGTGGTGGAAAGAGTGTGACTATTGGGGACACTGTTTACGAAGCAGATAGAGATTCAGCAGGTGCTGCAAAATTTACTTCCTCGAAAGAGAGCTGGGGAGCCAGCAACAGTGGATACTTCTGGGATAAGATTATAACAGCAAAAGACTACCTGGCGAATAATATATCTGCCATTAAGGGAAATGACTCTGAACTGTACACGACAGCTCGGCTCTCAGCTTTATCTCTGACTTACTATGGACGTTGTTTAGCAAATGGAAACTACACCGTGACACTGCACTTTGCAGAGATTGTTATAAGAGACAATCGATCTTTCCAAAGTCTTGGAAAACGGATATTTGATGTCTATATTCAG.......................................................................GGTGAGAGGAAGCTCAAAGATTTTGATATTAGAACTGATGCTGGAGGAGTTGATAAACCTTTCACGATAAAGTTCAATGCAACTGTAGCAGACAGCACTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTNCTTTGAAGCTA..........................................................................................................................................................................................ATTTCAAGCCCCCCTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341288" ref_strand="+" ref_description="SGN-E341288 [cTOE-22-H9]">
      <seq>ttctgggataagattataacagcaaaagactacctggcgaataatatatctgccattaagggaaatgactctgaactgtacacgacagctcggctctcagctttatctctgacttactatggacgttgtttagcaaatggaaactacaccgtgacactgcactttgcagagattgttataagagacaatcgatctttccaaagtcttggaaaacggatatttgatgtctatattcagggtgagaggaagctcaaagattttgatattagaactgatgctggaggagttgataaacctttcacgataaagttcaatgcaactgtagcagacagcactctagaagtgcgctttcagtatgctgggaaaggaacagctgctctccctagaagaggaagctatggccctttagtttctgccatctcttttgaagctaatttcaagccccctcctgattacaaaaagttggttcccatcatagctggatcagtggtgtccttattaattctcattttgacaatatcatttgttgcttggaagagacacagaaacaagatagcaaaggaagaagaatcaagaggactagattcaatgactggtgtgtttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="84858" stop="86527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85158" g_stop="85394" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85395" i_stop="85465" i_length="71">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85661" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="433" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85662" i_stop="85847" i_length="186">
            <donor d_prob="0.383" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85848" g_stop="85982" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="568" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85983" i_stop="86188" i_length="206">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86189" g_stop="86227" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="607" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E341288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85158" e_stop="85394"/>
          <exon e_start="85466" e_stop="85661"/>
          <exon e_start="85848" e_stop="85982"/>
          <exon e_start="86189" e_stop="86227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGGATAAGATTATAACAGCAAAAGACTACCTGGCGAATAATATATCTGCCATTAAGGGAAATGACTCTGAACTGTACACGACAGCTCGGCTCTCAGCTTTATCTCTGACTTACTATGGACGTTGTTTAGCAAATGGAAACTACACCGTGACACTGCACTTTGCAGAGATTGTTATAAGAGACAATCGATCTTTCCAAAGTCTTGGAAAACGGATATTTGATGTCTATATTCAGGTCAATTAACATTCATCCGAGTATTAAGTCAAGGTTTAGGTGCTGTTTGCTCACAATTTAACTGAATGCAGGGTGAGAGGAAGCTCAAAGATTTTGATATTAGAACTGATGCTGGAGGAGTTGATAAACCTTTCACGATAAAGTTCAATGCAACTGTAGCAGACAGCACTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTAGTAATTATACTATATCTCTTTTTACAAAGGACACCCTTGAACACACTGAACGATTAATTCTATTACTTTATTCTTAGAGAGCCAAAGGATAGACTTGAATTATTTGCTCAATTACTTAATATTGAAGACAAACAAACAAATGCAAGTGCATTTTATACTCTTACTCATATTTTTTCTGTATCATAGATTTCAAGCCCCCTCCTGATTACAAAAAGTTGGTTCCCATCATAGCTGGATCAGTGGTGTCCTTATTAATTCTCATTTTGACAATATCATTTGTTGCTTGGAAGAGACACAGAAACAAGATAGCAAAGGAAGAAGGTGATGCTACTACACTCCAGCAGCCTATTTGAACATACATATAATCTGTTCTCCGCGATTTCTTGAAAAAGTTGTTATCAAAATGAAAATAATGTATTTTCAAGAAAAGAAGCATTTACGGCTAAATGCATTTCATATTACATAATTTCCATTTCATATGAAGTCATTTCCCTTTTTAAATGTTCTCTTTTCCTATAAATATACAGAATCAAGAGGACTAGATTCAATGACTGGTGTGTTTACCA</genome_strand>
        <mrna_strand>TTCTGGGATAAGATTATAACAGCAAAAGACTACCTGGCGAATAATATATCTGCCATTAAGGGAAATGACTCTGAACTGTACACGACAGCTCGGCTCTCAGCTTTATCTCTGACTTACTATGGACGTTGTTTAGCAAATGGAAACTACACCGTGACACTGCACTTTGCAGAGATTGTTATAAGAGACAATCGATCTTTCCAAAGTCTTGGAAAACGGATATTTGATGTCTATATTCAG.......................................................................GGTGAGAGGAAGCTCAAAGATTTTGATATTAGAACTGATGCTGGAGGAGTTGATAAACCTTTCACGATAAAGTTCAATGCAACTGTAGCAGACAGCACTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTA..........................................................................................................................................................................................ATTTCAAGCCCCCTCCTGATTACAAAAAGTTGGTTCCCATCATAGCTGGATCAGTGGTGTCCTTATTAATTCTCATTTTGACAATATCATTTGTTGCTTGGAAGAGACACAGAAACAAGATAGCAAAGGAAGAAG..............................................................................................................................................................................................................AATCAAGAGGACTAGATTCAATGACTGGTGTGTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337951" ref_strand="-" ref_description="SGN-E337951 [cTOE-14-C3]">
      <seq>tatttgatgtctatattcagggtgagaggaagctcaaagattttgatattagaactgatgctggaggagttgataaacctttcacgataaagttcaatgcaactgtagcagacagcactctagaagtgcgctttcagtatgctgggaaaggaacagctgctctccctagaagaggaagctatggccctttagtttctgccatctcttttgaagctagtaattatactatatctctttttacaaaggacacccttgaacacactgaacgattaattctattactttattcttagagagccaaaggatagacttgaattatttgctcaattacttaatattgaagacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="85156" stop="86093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85375" g_stop="85394" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85395" i_stop="85465" i_length="71">
            <donor d_prob="0.625" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85793" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="348" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E337951" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337951" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85375" e_stop="85394"/>
          <exon e_start="85466" e_stop="85793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGATGTCTATATTCAGGTCAATTAACATTCATCCGAGTATTAAGTCAAGGTTTAGGTGCTGTTTGCTCACAATTTAACTGAATGCAGGGTGAGAGGAAGCTCAAAGATTTTGATATTAGAACTGATGCTGGAGGAGTTGATAAACCTTTCACGATAAAGTTCAATGCAACTGTAGCAGACAGCACTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTAGTAATTATACTATATCTCTTTTTACAAAGGACACCCTTGAACACACTGAACGATTAATTCTATTACTTTATTCTTAGAGAGCCAAAGGATAGACTTGAATTATTTGCTCAATTACTTAATATTGAAGACAAA</genome_strand>
        <mrna_strand>TATTTGATGTCTATATTCAG.......................................................................GGTGAGAGGAAGCTCAAAGATTTTGATATTAGAACTGATGCTGGAGGAGTTGATAAACCTTTCACGATAAAGTTCAATGCAACTGTAGCAGACAGCACTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTAGTAATTATACTATATCTCTTTTTACAAAGGACACCCTTGAACACACTGAACGATTAATTCTATTACTTTATTCTTAGAGAGCCAAAGGATAGACTTGAATTATTTGCTCAATTACTTAATATTGAAGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372304" ref_strand="-" ref_description="SGN-E372304 [TUS-30-D3](-)">
      <seq>tgctgggaaaggaacagctgctctccctagaagaggaagctatggccctttagtttctgccatctcttttgaagctaatttcaagccccctcctgattacaaaaagttggttcccatcatagctggatcagtggtgtccttattaattctcattttgacaatatcatttgttgcttggaagagacacagaaacaagatagcaaaggaagaagaatcaagaggactagattcaatgactggtgtgtttaccatcagacaaatcaaagctgccacaaacaattttgacgctgcaaataaaatcggggaaggtggttttggatctgtctacaagggtacactatcagatggcgcagttattgctgttaagcagctttcatccaaatcgaaacaagggaagcgtgagtttgtaaatgagataggtatgatctctagtttacaccacccaaatcttgtacaactatatggatgttgtgctgaacggaatcacctgctactggtgtatgagtacatggagaacaatagcctggctcgtgctttatttggtccagaagaacatcggctcaaaatagactggccaaccaggcaaaagatctgtattgggatagcaaaaggcttatctttcctacatgaagaatcgtcattgaaaattgtccatagagacatcaaagcaacgaatgtacttcttgacaagagactaaatccgaaaatctcagactttggtctggccagacttgatgatgatgataacaacacacacattaccactagagttgccggaaccatangatatatggccccctgaatatgcactatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="85285" stop="87614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85585" g_stop="85661" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85662" i_stop="85847" i_length="186">
            <donor d_prob="0.383" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85848" g_stop="85982" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="212" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85983" i_stop="86188" i_length="206">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86189" g_stop="86307" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="331" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86308" i_stop="86431" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86432" g_stop="86642" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="542" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86643" i_stop="86837" i_length="195">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86838" g_stop="87078" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="783" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87079" i_stop="87282" i_length="204">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87283" g_stop="87314" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="816" r_length="33" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E372304" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372304" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85585" e_stop="85661"/>
          <exon e_start="85848" e_stop="85982"/>
          <exon e_start="86189" e_stop="86307"/>
          <exon e_start="86432" e_stop="86642"/>
          <exon e_start="86838" e_stop="87078"/>
          <exon e_start="87283" e_stop="87314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTAGTAATTATACTATATCTCTTTTTACAAAGGACACCCTTGAACACACTGAACGATTAATTCTATTACTTTATTCTTAGAGAGCCAAAGGATAGACTTGAATTATTTGCTCAATTACTTAATATTGAAGACAAACAAACAAATGCAAGTGCATTTTATACTCTTACTCATATTTTTTCTGTATCATAGATTTCAAGCCCCCTCCTGATTACAAAAAGTTGGTTCCCATCATAGCTGGATCAGTGGTGTCCTTATTAATTCTCATTTTGACAATATCATTTGTTGCTTGGAAGAGACACAGAAACAAGATAGCAAAGGAAGAAGGTGATGCTACTACACTCCAGCAGCCTATTTGAACATACATATAATCTGTTCTCCGCGATTTCTTGAAAAAGTTGTTATCAAAATGAAAATAATGTATTTTCAAGAAAAGAAGCATTTACGGCTAAATGCATTTCATATTACATAATTTCCATTTCATATGAAGTCATTTCCCTTTTTAAATGTTCTCTTTTCCTATAAATATACAGAATCAAGAGGACTAGATTCAATGACTGGTGTGTTTACCATCAGACAAATCAAAGCTGCCACAAACAATTTTGACGCTGCAAATAAAATCGGGGAAGGTGGTTTTGGATCTGTCTACAAGGTTTATCCCAATCTTACATCTATCAAGCTTTCTACTTTATTATGTCAGCTATAACAGCTGGACATAAATAATATGTATAAACAGCCTTAATCAACATGTTTTTTTTTCTTGTGTTAATAAACAGGGTACACTATCAGATGGCGCAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCGAAACAAGGGAAGCGTGAGTTTGTAAATGAGATAGGTATGATCTCTAGTTTACACCACCCAAATCTTGTACAACTATATGGATGTTGTGCTGAACGGAATCACCTGCTACTGGTGTATGAGTACATGGAGAACAATAGCCTGGCTCGTGCTTTATTTGGTAATTTATCATCCTTCTTCATTGTTTCAGTTATAAGTCGAGCAGAAAATAAGCTAAAAGTGAAACAAGTTAAAAGATTGCTCCTTGTAATTACTGAAAGAGTTTAAAATGAGAAGTCAATATATGTTTCATGTTTCTAAACGTGTGTGTTTACGAGAAGGTATGCATAGATTTTTACTTCACATTAAAATACAGGTCCAGAAGAACATCGGCTCAAAATAGACTGGCCAACCAGGCAAAAGATCTGTATTGGGATAGCAAAAGGCTTATCTTTCCTACATGAAGAATCGTCATTGAAAATTGTCCATAGAGACATCAAAGCAACGAATGTACTTCTTGACAAGAAACTAAATCCGAAAATCTCAGACTTTGGTCTGGCCAGACTTGATGATGATGATAACAACACACACATTACCACTAGAGTTGCCGGAACCATGTAAACTTTCTGACAAGTCTCTCATTCATTTTTGTGTTCTTTAAAGAGGAAATATATCGAGTATTGATAGCCACAGTATGGCTAATTCTACATGTCATAATATTCTTCAATGACACCAAAACAGAAAAGGAATACAAATTGATCATCTCTATATCTTTGACCTGCTTTTCTCCATGAAGTTAAGGTTCTCACTTTGTTCTGCAGAGGATATATGG-CCCCTGAATATGCACTATGGG</genome_strand>
        <mrna_strand>TGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTA..........................................................................................................................................................................................ATTTCAAGCCCCCTCCTGATTACAAAAAGTTGGTTCCCATCATAGCTGGATCAGTGGTGTCCTTATTAATTCTCATTTTGACAATATCATTTGTTGCTTGGAAGAGACACAGAAACAAGATAGCAAAGGAAGAAG..............................................................................................................................................................................................................AATCAAGAGGACTAGATTCAATGACTGGTGTGTTTACCATCAGACAAATCAAAGCTGCCACAAACAATTTTGACGCTGCAAATAAAATCGGGGAAGGTGGTTTTGGATCTGTCTACAAG............................................................................................................................GGTACACTATCAGATGGCGCAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCGAAACAAGGGAAGCGTGAGTTTGTAAATGAGATAGGTATGATCTCTAGTTTACACCACCCAAATCTTGTACAACTATATGGATGTTGTGCTGAACGGAATCACCTGCTACTGGTGTATGAGTACATGGAGAACAATAGCCTGGCTCGTGCTTTATTTG...................................................................................................................................................................................................GTCCAGAAGAACATCGGCTCAAAATAGACTGGCCAACCAGGCAAAAGATCTGTATTGGGATAGCAAAAGGCTTATCTTTCCTACATGAAGAATCGTCATTGAAAATTGTCCATAGAGACATCAAAGCAACGAATGTACTTCTTGACAAGAGACTAAATCCGAAAATCTCAGACTTTGGTCTGGCCAGACTTGATGATGATGATAACAACACACACATTACCACTAGAGTTGCCGGAACCAT............................................................................................................................................................................................................ANGATATATGGCCCCCTGAATATGCACTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371725" ref_strand="-" ref_description="SGN-E371725 [TUS-30-E3](-)">
      <seq>tgctgggaaaggaacagctgctctccctagaagaggaagctatggccctttagtttctgccatctcttttgaagctaatttcaagccccctcctgattacaaaaagttggttcccatcatagctggatcagtggtgtccttattaattctcattttgacaatatcatttgttgcttggaagagacacagaaacaagatagcaaaggaagaagaatcaagaggactagattcaatgactggtgtgtttaccatcagacaaatcaaagctgccacaaacaattttgacgctgcaaataaaatcggggaaggtggttttggatctgtctacaagggtacactatcagatggcgcagttattgctgttaagcagctttcatccaaatcgaaacaagggaagcgtgagtttgtaaatgagataggtatgatctctagtttacaccacccaaatcttgtacaactatatggatgttgtgctgaacggaatcacctgctactggtgtatgagtacatggagaacaatagcctggctcgtgctttatttggtccagaagaacatcggctcaaaatagactggccaaccaggcaaaagatctgtattgggatagcaaaaggcttatctttcctacatgaagaatcgtcattgaaaattgtccatagagacatcaaagcaacgaatgtacttcttgacaagaaactaaatccgaaaatctcagactttggtctggccagacttgatgatgatgataacaacacacacattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="85285" stop="87358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85585" g_stop="85661" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85662" i_stop="85847" i_length="186">
            <donor d_prob="0.383" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85848" g_stop="85982" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="212" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85983" i_stop="86188" i_length="206">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86189" g_stop="86307" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="331" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86308" i_stop="86431" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86432" g_stop="86642" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="542" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86643" i_stop="86837" i_length="195">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86838" g_stop="87058" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="763" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E371725" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371725" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85585" e_stop="85661"/>
          <exon e_start="85848" e_stop="85982"/>
          <exon e_start="86189" e_stop="86307"/>
          <exon e_start="86432" e_stop="86642"/>
          <exon e_start="86838" e_stop="87058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTAGTAATTATACTATATCTCTTTTTACAAAGGACACCCTTGAACACACTGAACGATTAATTCTATTACTTTATTCTTAGAGAGCCAAAGGATAGACTTGAATTATTTGCTCAATTACTTAATATTGAAGACAAACAAACAAATGCAAGTGCATTTTATACTCTTACTCATATTTTTTCTGTATCATAGATTTCAAGCCCCCTCCTGATTACAAAAAGTTGGTTCCCATCATAGCTGGATCAGTGGTGTCCTTATTAATTCTCATTTTGACAATATCATTTGTTGCTTGGAAGAGACACAGAAACAAGATAGCAAAGGAAGAAGGTGATGCTACTACACTCCAGCAGCCTATTTGAACATACATATAATCTGTTCTCCGCGATTTCTTGAAAAAGTTGTTATCAAAATGAAAATAATGTATTTTCAAGAAAAGAAGCATTTACGGCTAAATGCATTTCATATTACATAATTTCCATTTCATATGAAGTCATTTCCCTTTTTAAATGTTCTCTTTTCCTATAAATATACAGAATCAAGAGGACTAGATTCAATGACTGGTGTGTTTACCATCAGACAAATCAAAGCTGCCACAAACAATTTTGACGCTGCAAATAAAATCGGGGAAGGTGGTTTTGGATCTGTCTACAAGGTTTATCCCAATCTTACATCTATCAAGCTTTCTACTTTATTATGTCAGCTATAACAGCTGGACATAAATAATATGTATAAACAGCCTTAATCAACATGTTTTTTTTTCTTGTGTTAATAAACAGGGTACACTATCAGATGGCGCAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCGAAACAAGGGAAGCGTGAGTTTGTAAATGAGATAGGTATGATCTCTAGTTTACACCACCCAAATCTTGTACAACTATATGGATGTTGTGCTGAACGGAATCACCTGCTACTGGTGTATGAGTACATGGAGAACAATAGCCTGGCTCGTGCTTTATTTGGTAATTTATCATCCTTCTTCATTGTTTCAGTTATAAGTCGAGCAGAAAATAAGCTAAAAGTGAAACAAGTTAAAAGATTGCTCCTTGTAATTACTGAAAGAGTTTAAAATGAGAAGTCAATATATGTTTCATGTTTCTAAACGTGTGTGTTTACGAGAAGGTATGCATAGATTTTTACTTCACATTAAAATACAGGTCCAGAAGAACATCGGCTCAAAATAGACTGGCCAACCAGGCAAAAGATCTGTATTGGGATAGCAAAAGGCTTATCTTTCCTACATGAAGAATCGTCATTGAAAATTGTCCATAGAGACATCAAAGCAACGAATGTACTTCTTGACAAGAAACTAAATCCGAAAATCTCAGACTTTGGTCTGGCCAGACTTGATGATGATGATAACAACACACACATTACC</genome_strand>
        <mrna_strand>TGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTA..........................................................................................................................................................................................ATTTCAAGCCCCCTCCTGATTACAAAAAGTTGGTTCCCATCATAGCTGGATCAGTGGTGTCCTTATTAATTCTCATTTTGACAATATCATTTGTTGCTTGGAAGAGACACAGAAACAAGATAGCAAAGGAAGAAG..............................................................................................................................................................................................................AATCAAGAGGACTAGATTCAATGACTGGTGTGTTTACCATCAGACAAATCAAAGCTGCCACAAACAATTTTGACGCTGCAAATAAAATCGGGGAAGGTGGTTTTGGATCTGTCTACAAG............................................................................................................................GGTACACTATCAGATGGCGCAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCGAAACAAGGGAAGCGTGAGTTTGTAAATGAGATAGGTATGATCTCTAGTTTACACCACCCAAATCTTGTACAACTATATGGATGTTGTGCTGAACGGAATCACCTGCTACTGGTGTATGAGTACATGGAGAACAATAGCCTGGCTCGTGCTTTATTTG...................................................................................................................................................................................................GTCCAGAAGAACATCGGCTCAAAATAGACTGGCCAACCAGGCAAAAGATCTGTATTGGGATAGCAAAAGGCTTATCTTTCCTACATGAAGAATCGTCATTGAAAATTGTCCATAGAGACATCAAAGCAACGAATGTACTTCTTGACAAGAAACTAAATCCGAAAATCTCAGACTTTGGTCTGGCCAGACTTGATGATGATGATAACAACACACACATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208539" ref_strand="+" ref_description="SGN-E208539 [cLEC-39-J15]">
      <seq>taaaatcggggaaggtggttttggatctgtctacaagggtacactatcagatggcgcagttattgctgttaagcagctttcatccaaatcgaaacaagggaagcgtgagtttgtaaatgagataggtatgatctctagtttacaccacccaaatcttgtacaactatatggatgttgtgctgaacggaatcacctgctactggtgtatgagtacatggagaacaatagcctggctcgtgctttatttggtccagaagaacatcggctcaaaatagactggccaaccaggcaaaagatctgtattgggatagcaaaaggcttatctttcctacatgaagaatcgtcattgaaaattgtccatagagacatcaaagcaacgaatgtacttcttgacaagaaactaaatccgaaaatctcagactttggtctggccagacttgatgatgatgataacaacacacacattaccactagagttgccggaaccataggatatatggcccctgaatatgcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="85971" stop="87610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86271" g_stop="86307" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86308" i_stop="86431" i_length="124">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86432" g_stop="86642" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="248" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86643" i_stop="86837" i_length="195">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86838" g_stop="87078" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="489" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87079" i_stop="87282" i_length="204">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87283" g_stop="87310" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="517" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E208539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86271" e_stop="86307"/>
          <exon e_start="86432" e_stop="86642"/>
          <exon e_start="86838" e_stop="87078"/>
          <exon e_start="87283" e_stop="87310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCGGGGAAGGTGGTTTTGGATCTGTCTACAAGGTTTATCCCAATCTTACATCTATCAAGCTTTCTACTTTATTATGTCAGCTATAACAGCTGGACATAAATAATATGTATAAACAGCCTTAATCAACATGTTTTTTTTTCTTGTGTTAATAAACAGGGTACACTATCAGATGGCGCAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCGAAACAAGGGAAGCGTGAGTTTGTAAATGAGATAGGTATGATCTCTAGTTTACACCACCCAAATCTTGTACAACTATATGGATGTTGTGCTGAACGGAATCACCTGCTACTGGTGTATGAGTACATGGAGAACAATAGCCTGGCTCGTGCTTTATTTGGTAATTTATCATCCTTCTTCATTGTTTCAGTTATAAGTCGAGCAGAAAATAAGCTAAAAGTGAAACAAGTTAAAAGATTGCTCCTTGTAATTACTGAAAGAGTTTAAAATGAGAAGTCAATATATGTTTCATGTTTCTAAACGTGTGTGTTTACGAGAAGGTATGCATAGATTTTTACTTCACATTAAAATACAGGTCCAGAAGAACATCGGCTCAAAATAGACTGGCCAACCAGGCAAAAGATCTGTATTGGGATAGCAAAAGGCTTATCTTTCCTACATGAAGAATCGTCATTGAAAATTGTCCATAGAGACATCAAAGCAACGAATGTACTTCTTGACAAGAAACTAAATCCGAAAATCTCAGACTTTGGTCTGGCCAGACTTGATGATGATGATAACAACACACACATTACCACTAGAGTTGCCGGAACCATGTAAACTTTCTGACAAGTCTCTCATTCATTTTTGTGTTCTTTAAAGAGGAAATATATCGAGTATTGATAGCCACAGTATGGCTAATTCTACATGTCATAATATTCTTCAATGACACCAAAACAGAAAAGGAATACAAATTGATCATCTCTATATCTTTGACCTGCTTTTCTCCATGAAGTTAAGGTTCTCACTTTGTTCTGCAGAGGATATATGGCCCCTGAATATGCACTA</genome_strand>
        <mrna_strand>TAAAATCGGGGAAGGTGGTTTTGGATCTGTCTACAAG............................................................................................................................GGTACACTATCAGATGGCGCAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCGAAACAAGGGAAGCGTGAGTTTGTAAATGAGATAGGTATGATCTCTAGTTTACACCACCCAAATCTTGTACAACTATATGGATGTTGTGCTGAACGGAATCACCTGCTACTGGTGTATGAGTACATGGAGAACAATAGCCTGGCTCGTGCTTTATTTG...................................................................................................................................................................................................GTCCAGAAGAACATCGGCTCAAAATAGACTGGCCAACCAGGCAAAAGATCTGTATTGGGATAGCAAAAGGCTTATCTTTCCTACATGAAGAATCGTCATTGAAAATTGTCCATAGAGACATCAAAGCAACGAATGTACTTCTTGACAAGAAACTAAATCCGAAAATCTCAGACTTTGGTCTGGCCAGACTTGATGATGATGATAACAACACACACATTACCACTAGAGTTGCCGGAACCAT............................................................................................................................................................................................................AGGATATATGGCCCCTGAATATGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545872" ref_strand="+" ref_description="SGN-E545872 [TUS-68-P4](-)">
      <seq>atgataacaacacacacattaccactagagttgccggaaccataggatatatggcccctgaatatgcactatggggctacttgacctacaaagcagatgtctacagttttggagttcttgcattagagattgctgctgggaaaagcaatatgacatatcgccccaatgagaaattcgtctgcctcctagattgggctcttgttctacaaagacaaggaaaactgaaggaagtagtagatgcaacattgggcagtgatttgaacgaggacgaggctctaaggatgttaaatgtagctttgctatgtaccagtccatctccagcacttaggccaaccatgtctgctgtagtcaaaattcttgaaaatcatcttgacctccctgagtttacaatggaatcaagattctatgatgattatgatcttttcaactttcaagggttaagagacaagtatgaagatacaaacaaaagccaaccactcacacattcatcaaataccattacaacaagagattgctcttacactacctctacatcagcttaaatgtttgcgagacaatattttcttggtggtttatcaaacataagatatttgattagacccaaaaacagtttttgttgattattgaatcacaaaaatacaaatacacattatgaatctctcaatcaattgaaaaaatatattttcaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="86736" stop="113976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87036" g_stop="87078" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87079" i_stop="87282" i_length="204">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87283" g_stop="87433" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="194" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87434" i_stop="87526" i_length="93">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87527" g_stop="88019" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="687" r_length="493" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88020" i_stop="89706" i_length="1687">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89707" g_stop="89734" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="715" r_length="28" r_score="0.679"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89735" i_stop="89786" i_length="52">
            <donor d_prob="0.941" d_score="0.00"/>
            <acceptor a_prob="0.023" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89787" g_stop="89791" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="720" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E545872" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87036" e_stop="87078"/>
          <exon e_start="87283" e_stop="87433"/>
          <exon e_start="87527" e_stop="88019"/>
          <exon e_start="89707" e_stop="89734"/>
          <exon e_start="89787" e_stop="89791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATAACAACACACACATTACCACTAGAGTTGCCGGAACCATGTAAACTTTCTGACAAGTCTCTCATTCATTTTTGTGTTCTTTAAAGAGGAAATATATCGAGTATTGATAGCCACAGTATGGCTAATTCTACATGTCATAATATTCTTCAATGACACCAAAACAGAAAAGGAATACAAATTGATCATCTCTATATCTTTGACCTGCTTTTCTCCATGAAGTTAAGGTTCTCACTTTGTTCTGCAGAGGATATATGGCCCCTGAATATGCACTATGGGGCTACTTGACCTACAAAGCAGATGTCTACAGTTTTGGAGTTCTTGCATTAGAGATTGCTGCTGGGAAAAGCAACATGACATATCGCCCCAATGAGAAATTTGTCTGCCTCCTAGATTGGGTAAGGACTCCTAATCCTTGATAACTGAATAGCAAGCGCGATCATTCATTCTGTCTTCAACACATTGTGGCTTGCATTTTATTGTATATTCAGGCTCTTGTTCTACAAAGACAAGGAAAACTGAAGGAAGTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGGATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAGATATCTCTTTGGGTACTTCCTCTTCTGCTTGAAACTCATTTTGTTAATGTAGTATTTTTGAATGACAATAATTTGACTAGGATAGAGGATACTTTCTTTCACACAAGCGATTATCAAAATAAAAATTGAAATGGATCACACAGTCAATTTATTTAGTTTATAAAAATAAAAATTTAGAATAGAAAAGAAGATTACAAGATAAATAATCTAACTCTCTATTATTCACGAATAAAATAAAAATTCAAATAATTAAAATTATCGATCGAGATGCATAATCAATTTTGTCAGAATGTAACTTTAGTTTATGAAGCATCTCCAATCAAGAATCCTAGCAAATTGACTTGTAAATAAGCAGCAAAAATGTTCACTAACACGTGCATGTAATGAAGGCTTAATTTATTCCTCATTTCAAATTTACAAGTTCAACAAGCTGGCTCTAGTCACACATCTATAGTAAACCACGTATTTTTTAGCTATTTTGTTAGTAATAAGATATTTTTGAGCTATTTGATTAGTTATAAGATATTTTTTTAGCTACTTGATTAATGATAAGGATATTTTAAGTAATAGAAGATAAATTAACTTATTTAGGTCAAATAGTTCAAAAATATTTTAGACATTTTTCTTCAAGAAAAATCTATTCAAATTAAAGTAATCTATATTACTTTTTATTTTAAATGAATAGTGGTGAGAAATCCAACAAGTCAAGTCATTTAATGAGAGTTATAAAATTGAGATGATATTTATAAAATTATTTTCAAATATAAAAAAATCTTATATTATAAATTTATTTCTTTAATTTTCATGAAACTTATAATCTTAAAAGATACATCTAAATCTTCGCACCAAATATCTTTTCTTTTTTTTTTATTAGAAATATCATTGTCAAATTAACATCATATATAACTAGCTAATGTGAACCAAAGCCATGTCGTATAATATTGCATTTATCATTTCTTCTTTTTATGATGATTTGTACTACTACTATATTAATGTCTTGTCGACACAACTTGCTTTCGATTCACACTCCTCCTTCCTATTTCGTTTTAATTCGTATTTTCTTCCGTTTTATATTTCATTATTTTTCTATAAATAGTTAATTTATAATATTTGTTATTTATAAAATTAATACATAAATTATCATATTTTTTTTTCTTGTGAGCTATTAGCCTCGAAAATATACATTTGACCAACTTAGAAAAACTAAGTAAATGATTCATGTGCATTGATCAAATTAATTAATTAAAATTAATTTATTTATACTAATCATAAAAAACTTGAGTTGAAAAATTAAAAACAAGGGTAGAATAGTAATCTTGCTTAGTTTCTTAATGCACGTGAAATCTTTCTCCTAAGTGGTGACCTATAAATAGGAACGGAGGGAATATATGATACTCACGCCATTTCAAATCTGAATTATTAAGATACTTTTTATTTTTAAATTAACTTAATTTTGTTTAATTTTCAAAATTATTTTAAAATATTATTTTAATTTTATCCGTCATTAGTTACTCTTAAAATTAGTTATTAATTAACGTATAGTTATTTTAATCATAAATTTAATGATAATTAGGAAGTGTAAAAATGAAAAGTATGTCTAATGTATGTCTTAATATTCTTTTGCTAGAATGTGTGAAACGCCTCAATAATTTAATTAATTTGAAATGGAAGATAGTGTTTTGAAAAAAAATCATAATTAAACTAGGAGAGGTACAAATATTTATTTTTATTTTTTCAAGCTGTATTCGAATTCACATTGAAGTTCCC</genome_strand>
        <mrna_strand>ATGATAACAACACACACATTACCACTAGAGTTGCCGGAACCAT............................................................................................................................................................................................................AGGATATATGGCCCCTGAATATGCACTATGGGGCTACTTGACCTACAAAGCAGATGTCTACAGTTTTGGAGTTCTTGCATTAGAGATTGCTGCTGGGAAAAGCAATATGACATATCGCCCCAATGAGAAATTCGTCTGCCTCCTAGATTGG.............................................................................................GCTCTTGTTCTACAAAGACAAGGAAAACTGAAGGAAGTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGGATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACAAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTTGCGAGACAATATTTTCTTGGTGGTTTATCAAACATAAGATATTTGATTAGACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAACTCGAGGGG....................................................GGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371726" ref_strand="-" ref_description="SGN-E371726 [TUS-30-E3]">
      <seq>agttcttgcattagagattgctgctgggaaaagcaacatgacatatcgccccaatgagaaatttgtctgcctcctagattgggctcttgttctacaaagacaaggaaaactgaaggaagtagtagatgcaacattgggcagtgatttgaacgaggacgaggctctaagaatgttaaatgtagctttgctatgtaccagtccatctccagcacttaggccaaccatgtctgctgtagtcaaaattcttgaaaatcatcttgacctccctgagtttacaatggaatcaagattttatgatgattatgatcttttcaactttcaagggttaagagacaagtatgaagatacaaacgaaagccaaccactcacacattcatcaaataccattacaacaaaagattgctcttacactacctctacatcagcttaaatgttcgcgagacaatatttttttggcggtttatcaaacataagatatttgattacacccaaaaacagtttttgttgattattgaatcacaaaaatacaaatacacattatgaatctctcaatcaattgaaaaaatatattttcaatcagatatctctttgggtaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="87052" stop="113976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87352" g_stop="87433" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87434" i_stop="87526" i_length="93">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87527" g_stop="88036" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="592" r_length="510" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88037" i_stop="88250" i_length="214">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88251" g_stop="88285" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="626" r_length="34" r_score="0.657"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E371726" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87352" e_stop="87433"/>
          <exon e_start="87527" e_stop="88036"/>
          <exon e_start="88251" e_stop="88285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTTGCATTAGAGATTGCTGCTGGGAAAAGCAACATGACATATCGCCCCAATGAGAAATTTGTCTGCCTCCTAGATTGGGTAAGGACTCCTAATCCTTGATAACTGAATAGCAAGCGCGATCATTCATTCTGTCTTCAACACATTGTGGCTTGCATTTTATTGTATATTCAGGCTCTTGTTCTACAAAGACAAGGAAAACTGAAGGAAGTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGGATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAGATATCTCTTTGGGTACTTCCTCTTCTGCTTGAAACTCATTTTGTTAATGTAGTATTTTTGAATGACAATAATTTGACTAGGATAGAGGATACTTTCTTTCACACAAGCGATTATCAAAATAAAAATTGAAATGGATCACACAGTCAATTTATTTAGTTTATAAAAATAAAAATTTAGAATAGAAAAGAAGATTACAAGATAAATAATCTAACTCTCTATTATTCACGAATAAAATAAAAATTCAAATAATTAAAATTATCG</genome_strand>
        <mrna_strand>AGTTCTTGCATTAGAGATTGCTGCTGGGAAAAGCAACATGACATATCGCCCCAATGAGAAATTTGTCTGCCTCCTAGATTGG.............................................................................................GCTCTTGTTCTACAAAGACAAGGAAAACTGAAGGAAGTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGAATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTTTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAAAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTTTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAGATATCTCTTTGG......................................................................................................................................................................................................................GTA-AAAAAAAAAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341114" ref_strand="-" ref_description="SGN-E341114 [cTOE-22-B19]">
      <seq>gtagtagatgcaacattgggcagtgatttgaacgaggacgaggctctaaggatgttaaatgtagctttgctatgtaccagtccatctccagcacttaggccaaccatgtctgctgtagtcaaaattcttgaaaatcatcttgacctccctgagtttacaatggaatcaagattctatgatgattatgatcttttcaactttcaagggttaagagacaagtatgaagatacaaacgaaagccaaccactcacacattcatcaaataccattacaacaagagattgctcttacactacctctacatcagcttaaatgttcgcgagacaatattttcttggcggtttatcaaacataagatatttgattacacccaaaaacagtttttgttgattattgaatcacaaaaatacaaatacacattatgaatctctcaatcaattgaaaaaatatattttcaatcaaaaaaaaaaaaaaaaaactgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="87263" stop="113980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87563" g_stop="88024" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88025" i_stop="88180" i_length="156">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88181" g_stop="88202" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="484" r_length="22" r_score="0.682"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E341114" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341114" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87563" e_stop="88024"/>
          <exon e_start="88181" e_stop="88202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGGATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAGATATCTCTTTGGGTACTTCCTCTTCTGCTTGAAACTCATTTTGTTAATGTAGTATTTTTGAATGACAATAATTTGACTAGGATAGAGGATACTTTCTTTCACACAAGCGATTATCAAAATAAAAATTGAAATGGATCACACAGTCAATTTATTTAGTTTATAAAAATAAAAATTTAGA</genome_strand>
        <mrna_strand>GTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGGATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAA............................................................................................................................................................AAAAAAAAAAAAAAAACTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283097" ref_strand="-" ref_description="SGN-E283097 [cLER-17-E5]">
      <seq>ccagcacttaggccaaccatgtctgctgtagtcaaaattcttgaaaatcatcttgacctccctgagtttacaatggaatcaagattctatgatgattatgatcgtttcggctttcaagggttaagagacaagtatgaagatacaaacgaaagccaaccactcacacattcatcaaataccattacaacaagagattgctcttacactacctctacatcagcttaaatgttcgcgagacaatattttcttggcggtttatcaaacataagatatttgattacacccaaaaacagtttttgttgattattgaatcccaaaaatacaaatacacattatgaatctctcaatcaattgaaaaaatatattttcaatcagatatctctttgggtaaaaaaaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="87350" stop="88339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87650" g_stop="88036" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="406"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E283097" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283097" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87650" e_stop="88036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAGATATCTCTTTGG</genome_strand>
        <mrna_strand>CCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCGTTTCGGCTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCCCAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAGATATCTCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341128" ref_strand="+" ref_description="SGN-E341128 [cTOE-22-H17]">
      <seq>acattcttcaaattccattacaacaagagattgctcttacactacctctacatcagcttaaatgttcgcgagacaatattttcttggcggtttatcaaacataagatatttgattacacccaaaaacagtttttgttgattattgaatcacaaaaatacaaatacacattatgaatctctcaatcaattgaaaaaatatattttcaatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="87514" stop="88327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87814" g_stop="88024" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="212" polyA_stop="222"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E341128" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87814" e_stop="88024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAG</genome_strand>
        <mrna_strand>ACATTCTTCAAATTCCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341325" ref_strand="+" ref_description="SGN-E341325 [cTOE-22-F10]">
      <seq>acattcatcaaataccattacaacaagagattgctcttacactacctctacatcagcttaaatgttcgcgagacaatattttcttggcggtttatcaaacataagatatttgattacacccaaaaacagtttttgttgattattgaatcacaaaaatacaaatacacattatgaatctctcaatcaattgaaaaaatatattttcaatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="87514" stop="88327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87814" g_stop="88024" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="212" polyA_stop="222"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E341325" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87814" e_stop="88024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAG</genome_strand>
        <mrna_strand>ACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359287" ref_strand="+" ref_description="SGN-E359287 [cLHT-31-C12]">
      <seq>gagcattaatgaaaatgttagcattattacataatttcagtgtttcttcttttctgcttatcttagtcctctgttgtctactacaaatcattgaagcacaaagttaccgtcgtcttcttcctcaacaagaaaagaatgctctaaaagaaatagcggagcagttgggtaaaaaggactgggattttgatttgaatccttgtaacggcaatacaaattggactacaccaaaaattgacaagatatcgatgtatgtcaacaatgtaacctgcaattgctctacccctgatggcttctgtcatgtacaaagcatattactcaaaggacaagatctttcaggtgttctccctccctctctggtcaagttaccttatctcaagacaatagacgtcgcgctcaactatttgagtggtactattccccctgaatgggcatctatcaaactggaatttatgtctgttatggtgaatcaactctctgggccaattcctaaatacttgggaaacatgactacactacgttatatgagtttggagaataacatgtttaatggaactgttccaaaagaactcggaaacatggttaatctactgagtctcactctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="89680" stop="92227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89980" g_stop="90111" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90112" i_stop="90272" i_length="161">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90273" g_stop="90450" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="310" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90451" i_stop="91358" i_length="908">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91359" g_stop="91430" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="382" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91431" i_stop="91534" i_length="104">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91535" g_stop="91603" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="451" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91604" i_stop="91698" i_length="95">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91699" g_stop="91770" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="523" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91771" i_stop="91855" i_length="85">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91856" g_stop="91927" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="595" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91928" i_stop="92013" i_length="86">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92014" g_stop="92021" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="603" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E359287" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89980" e_stop="90111"/>
          <exon e_start="90273" e_stop="90450"/>
          <exon e_start="91359" e_stop="91430"/>
          <exon e_start="91535" e_stop="91603"/>
          <exon e_start="91699" e_stop="91770"/>
          <exon e_start="91856" e_stop="91927"/>
          <exon e_start="92014" e_stop="92021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTAATGAAAATGTTAGCATTATTACATAATTTCAGTATTTCTTCTTTTCTGCTTATCTTAGTCCTCTGTTCTCTAGTACAAATCATTGAAGCACAAAGTTACAGTCGTCTTCTTCCTCAACAAGAAAGTAATCTTTCTCATTCTTGGCATATAAAGTTTGAATCTTTACTGAAAAAATCCATTTTTTTATGAGTTCTTGTTGCAACCCCAGATGAAGATATCCTGGTTTCCATTGAAGCTGATAACTCTTTTTTTGAAAAACTGTATACTACTTTTATGGTTTTGCAGAGAATGCTCTAAAAGAAATAGCGGAGCAGTTGGGTAAAAAGGACTGGGATTTTGATTTGAATCCTTGTAACGGCAATACAAATTGGACTACACCAAAAATTGACAAGATATCGATGTATGTCAACAATGTAACCTGCAATTGCGCTACCCCTGATGGCTTCTGTCATGTACAAAGCATGTGAGACTTCACCCTTATGGATTTTGGTTCTTCTTATTTGCCCCCTATTTCTTCATTATGGATGTTTTTGGTATTAGGGGAATGTTTTCTAAGTCACCTTCAATTTCTTGAAGTATTCTTTCCAAAGAATATATATTTTCTACTAAGATCAAGAGGGTTACTCCGATGGTAAGCATCCTCCACTCTCAACCCTCGAGTCACCGGGGGAACAAAACAGGTAGGAGTTCTAGGGAGAGTAATACATTATTATCAACTTCTGATCAAAAAAACATATCAGGAAAACATTGAACACTTGATATGAGTAGCATAGGCATCTACTTTTATACCCCTAAACACTATAAAATGATCCCCAATGTAAAAAGAATTTTTTTTCCCACGAAAATGAACTCTATTTACCCGCTATAACAGTAAAGTCGACTTATAATATAACTATTTTTTTTGTCACATAACACACCATATATGTTCCTTAGCTTCCTCTATGTCAAAACATTGTTTAGGGCAAATGAGAGCATATCATTGCAATAAAAAATGTGTTTCCTAATGATGAGAATATTGAAACCATTCAGTATATTAGTCATGGGATATGGTTTCTACATGTCTAGATTAAATGGTAAAATGAAAGTTGAGATGACTAAGAAACTCCTCAAAAGCATAAAGCTAGCTGGCTTTCTCTTTGTCTAATGTCTATAAAGAAAGAAATAAGGACTTATTTGGTTGAGACTTGTTTCCTCATATAAATAACTTTATTTTATGGTTAGTCAGTATGTTTAATTAAGCCAATTGTTCTGGAACCAGTTTGATTAGCACATGGGGTCCAAAATTTTTGAATTAATAACAACCTTTCATTCAGATTTGGATGATGTAAAGCAAACAGGATTTCTTCTAATATCTTCTTATAATGTTGACAGATTACTCAAAGGACAAGATCTTGCAGGTGTTCTCCCTCCCTCTCTGGTCAAGTTACCTTATCTCAAGACAATGTACTGCATAATTGACTTGGAGTTATATTTTCAAACTCTTTACCAAATAATCATTATGATTATCCTTTGCCTGAGAAATATATTGTTCAACATCTGTCCTGCAGAGACGTCGCGCTCAACTATTTGAGTGGTACTATTCCCCCTGAATGGGCATCTATCAAACTGGAATTTATGTGAGCTGCAGTTCAATTGCACTTAATACTTTAATTTAGACATTACATAAAAAGGTACCTTTAACTTGAACTATCCTATAATTCATGATTTTCAGGTCTGTTATGGTGAATCAACTCTCTGGGCCAATTCCTAAATACTTGGGAAACATGACTACACTACGTTATATGTATGTTCTCTTGGATTTCACCACACCTATGAGGATAAGTAGTCCTTATTTTAACATTTATTGAGCTGGACTGCAAAACTTTCAGGAGTTTGGAGAATAACATGTTTAATGGAACTGTTCCAAAAGAACTCGGAAACATGGTTAATCTACAGAGTCTGTAAGGCCTTCCTAACTAGCCTCCTTTAGATATATTGAAAGGTTTTAGAATATCTTGACAAGTCAGTTGCTTTTTGCTCTGTGCAGCACTCTTA</genome_strand>
        <mrna_strand>GAGCATTAATGAAAATGTTAGCATTATTACATAATTTCAGTGTTTCTTCTTTTCTGCTTATCTTAGTCCTCTGTTGTCTACTACAAATCATTGAAGCACAAAGTTACCGTCGTCTTCTTCCTCAACAAGAAA.................................................................................................................................................................AGAATGCTCTAAAAGAAATAGCGGAGCAGTTGGGTAAAAAGGACTGGGATTTTGATTTGAATCCTTGTAACGGCAATACAAATTGGACTACACCAAAAATTGACAAGATATCGATGTATGTCAACAATGTAACCTGCAATTGCTCTACCCCTGATGGCTTCTGTCATGTACAAAGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTCAAAGGACAAGATCTTTCAGGTGTTCTCCCTCCCTCTCTGGTCAAGTTACCTTATCTCAAGACAAT........................................................................................................AGACGTCGCGCTCAACTATTTGAGTGGTACTATTCCCCCTGAATGGGCATCTATCAAACTGGAATTTAT...............................................................................................GTCTGTTATGGTGAATCAACTCTCTGGGCCAATTCCTAAATACTTGGGAAACATGACTACACTACGTTATAT.....................................................................................GAGTTTGGAGAATAACATGTTTAATGGAACTGTTCCAAAAGAACTCGGAAACATGGTTAATCTACTGAGTCT......................................................................................CACTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402347" ref_strand="+" ref_description="SGN-E402347 [PPC-7-O16]">
      <seq>gtacaaggcaactaacatatcttcaattaagggacataactctgaactatacacgacagctcggctctcagctttatctctaacttactatggacgttgtttagcaaatggaaactacactgtgacactgcactttgcagagattgttataagagataaccgatctttccagagtctcggaaaacggatgtttgatgtctatattcagggtgagaggaagctcaaagattttgacattagaactgctgctggaggagttgatgaagctttgacaagaaagttcaatacatctgtagaagatggcattctagaagtgcgctttcagtatgctgggaaaggaacaacagctgtccctagaaaaggaagctatggccctttagtttctgccatctcttttgaagctaatttcaagcccccttcaaatcacaaaaagatggctcacatcattgctggagtagtggcgtcctcattagttctcctttttacaatattctttgttgcttggaggagaagcagaaacagtatatcaaaggaagaagaattaagaggactagatctactgactggtgtattaacatcagacaaatcatagccgcgacaaacaactttgatgctgcaaataaaattggggaaggtggttttggctctgtctacaagcacccaaatcttgtcaaactatatggatgttgtgctgaaggaaaatcacttctattggtgtatgagtacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="94260" stop="96406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94560" g_stop="94767" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94768" i_stop="94839" i_length="72">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94840" g_stop="95035" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="404" r_length="196" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95036" i_stop="95290" i_length="255">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95291" g_stop="95425" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="539" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95426" i_stop="95647" i_length="222">
            <donor d_prob="0.892" d_score="0.92"/>
            <acceptor a_prob="0.707" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95648" g_stop="95766" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="657" r_length="118" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95767" i_stop="96033" i_length="267">
            <donor d_prob="0.692" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96034" g_stop="96106" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="730" r_length="73" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E402347" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94560" e_stop="94767"/>
          <exon e_start="94840" e_stop="95035"/>
          <exon e_start="95291" e_stop="95425"/>
          <exon e_start="95648" e_stop="95766"/>
          <exon e_start="96034" e_stop="96106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAAGGCAACTAATGTATCTTCAATTAAGGGACAGAACTCTGAACTATACACGACAGCTCGACTCTCAGCTTTATCTCTAACTTACTATGGACGCTGTTTAGCAAATGGAAAATACACCGTGACACTGCACTTTGCAGAGATTGTTATAAGAGATAACCGATCTTTCCAGAGTCTCGGAAAACGGATGTTTGATGTCTATATTCAGGTCAATTAAATATTAATCTGAGTATTGAATCCAGGTTTAGGTGCTCTTTGCTAACAGTCAAACTGGATGCAGGGTGAGAGGAAGCTCAAAGATTTTGACATTAGAACTGCTGCTGGAGGAGTTGATGAATCTTGGACAAGAAAGTTCAATGCATCTGTAGAAGATGGCATTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAACAGCTGTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCAGCCATTTCTTTTGAAGCTAGTAACACTACTATTACCCTTTGGTTCACTTATTTCTCTTTCATAGACTTTCTTAGACACACCGTGTACACTTTATTCTATTACCTTGTGACCTTTTACATGATGAAATTATGACACTGCTTCCACATGTTAATTACTCGCAGAGAGCCTAGAGAAAAGACTTCATCTTTTTCCTCAAAATACTTTAAAGATTAAAAGCATAAAAACAAATGTAAATGCATTTAACACTCTTCCTCTTCCTTTTTCTATATCATAGATTTCAAGCCCCCTTCAAATCACAAAAAGATGGCTCACATCATTGCTGGAGCAGTGGCGTCCTCACTAGTTCTCCTTTTGACAATATTTATTGTTGCTTGGAGGAGAAGCATAAACAGAATATCAAAGGAAGAAGGTGATGCTACAGTACCAGACTATTTTGTGTCTTACTTCTTAAATTGATAGAACTTACTGTATTATGTTTTCCATGATTTCCTGAAAAGTTCTTATCAAAATAAAATGATGATTTCGAAAACAAGAACATTATGGAGGTGCACAGTTCACATTAGTACATGATTTTCAATATTATATGGAGGTGTTGCACTTTTTAAATGTTTCCCCCCCTGCAAATCTACAGAATTAAGAGGACTAGATCTACTGACTGGTGTATTTACCATCAGACAAATCAAAGCTGCGACAAACAACTTTGATGTTGCAAATAAAATCGGGGAAGGTGGTTTTGGCTCTGTCTACAAGGTGCATCTCAATCTGATCACTCACAAGCTTTCTACTCACTCTCCACAAACCAATTACCTAGACCCTTTTTTGTTTAGCTACAACATCTAGAAATGGATTTTATGTATAGACAGCTATGACCTTTTTATATCTTCTTCTGTTTTCTTAATTAATAAATAGGGCACACTACTGGACGGTACAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCAAAACAAGGAAACCGCGAGTTTGTAAATGAGATAGGTATGATCTCTGGTTTACAGCACCCAAATCTTGTCAAACTATATGGATGTTGTGCTGAAGGAAATCAACTTCTGTTGGTGTATGAATACTTGG</genome_strand>
        <mrna_strand>GTACAAGGCAACTAACATATCTTCAATTAAGGGACATAACTCTGAACTATACACGACAGCTCGGCTCTCAGCTTTATCTCTAACTTACTATGGACGTTGTTTAGCAAATGGAAACTACACTGTGACACTGCACTTTGCAGAGATTGTTATAAGAGATAACCGATCTTTCCAGAGTCTCGGAAAACGGATGTTTGATGTCTATATTCAG........................................................................GGTGAGAGGAAGCTCAAAGATTTTGACATTAGAACTGCTGCTGGAGGAGTTGATGAAGCTTTGACAAGAAAGTTCAATACATCTGTAGAAGATGGCATTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAACAGCTGTCCCTAGAAAAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTA...............................................................................................................................................................................................................................................................ATTTCAAGCCCCCTTCAAATCACAAAAAGATGGCTCACATCATTGCTGGAGTAGTGGCGTCCTCATTAGTTCTCCTTTTTACAATATTCTTTGTTGCTTGGAGGAGAAGCAGAAACAGTATATCAAAGGAAGAAG..............................................................................................................................................................................................................................AATTAAGAGGACTAGATCTACTGACTGGTGTA-TTAACATCAGACAAATCATAGCCGCGACAAACAACTTTGATGCTGCAAATAAAATTGGGGAAGGTGGTTTTGGCTCTGTCTACAAG...........................................................................................................................................................................................................................................................................CACCCAAATCTTGTCAAACTATATGGATGTTGTGCTGAAGGAAAATCACTTCTATTGGTGTATGAGTACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432810" ref_strand="+" ref_description="SGN-E432810 [STM-57-H17]">
      <seq>gtacaaggcaactaacatatcttcaattaagggacataactctgaactatacacgacagctcggctctcagctttatctctaacttactatggacgttgtttagcaaatggaaactacactgtgacactgcactttgcagagattgttataagagataaccgatctttccagagtctcggaaaacggatgtttgatgtctatattcagggtgagaggaagctcaaagattttgacattagaactgctgctggaggagttgatgaagctttgacaagaaagttcaatacatctgtagaagatggcattctagaagtgcgctttcagtatgctgggaaaggaacaacagctgtccctagaaaaggaagctatggccctttagtttctgccatctcttttgaagctaatttcaagcccccttcaaatcacaaaaagatggctcacatcattgctggagtagtggcgtcctcattagttctcctttttacaatattctttgttgcttggaggagaagcagaaacagtatatcaaaggaagaagaattaagaggactagatctactgactggtgtattaacatcagacaaatcatagccgcgacaaacaactttgatgctgcaaataaaattgggggaagtggttttggctctgtctacaagcacccaaatcttgtcaaactatatggatgntgtgctgaanggaaatcacttctattggtgtatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="94260" stop="96398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94560" g_stop="94767" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94768" i_stop="94839" i_length="72">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94840" g_stop="95035" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="404" r_length="196" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95036" i_stop="95290" i_length="255">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95291" g_stop="95425" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="539" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95426" i_stop="95647" i_length="222">
            <donor d_prob="0.892" d_score="0.92"/>
            <acceptor a_prob="0.707" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95648" g_stop="95766" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="657" r_length="118" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95767" i_stop="96033" i_length="267">
            <donor d_prob="0.692" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96034" g_stop="96099" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="723" r_length="66" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E432810" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94560" e_stop="94767"/>
          <exon e_start="94840" e_stop="95035"/>
          <exon e_start="95291" e_stop="95425"/>
          <exon e_start="95648" e_stop="95766"/>
          <exon e_start="96034" e_stop="96099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAAGGCAACTAATGTATCTTCAATTAAGGGACAGAACTCTGAACTATACACGACAGCTCGACTCTCAGCTTTATCTCTAACTTACTATGGACGCTGTTTAGCAAATGGAAAATACACCGTGACACTGCACTTTGCAGAGATTGTTATAAGAGATAACCGATCTTTCCAGAGTCTCGGAAAACGGATGTTTGATGTCTATATTCAGGTCAATTAAATATTAATCTGAGTATTGAATCCAGGTTTAGGTGCTCTTTGCTAACAGTCAAACTGGATGCAGGGTGAGAGGAAGCTCAAAGATTTTGACATTAGAACTGCTGCTGGAGGAGTTGATGAATCTTGGACAAGAAAGTTCAATGCATCTGTAGAAGATGGCATTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAACAGCTGTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCAGCCATTTCTTTTGAAGCTAGTAACACTACTATTACCCTTTGGTTCACTTATTTCTCTTTCATAGACTTTCTTAGACACACCGTGTACACTTTATTCTATTACCTTGTGACCTTTTACATGATGAAATTATGACACTGCTTCCACATGTTAATTACTCGCAGAGAGCCTAGAGAAAAGACTTCATCTTTTTCCTCAAAATACTTTAAAGATTAAAAGCATAAAAACAAATGTAAATGCATTTAACACTCTTCCTCTTCCTTTTTCTATATCATAGATTTCAAGCCCCCTTCAAATCACAAAAAGATGGCTCACATCATTGCTGGAGCAGTGGCGTCCTCACTAGTTCTCCTTTTGACAATATTTATTGTTGCTTGGAGGAGAAGCATAAACAGAATATCAAAGGAAGAAGGTGATGCTACAGTACCAGACTATTTTGTGTCTTACTTCTTAAATTGATAGAACTTACTGTATTATGTTTTCCATGATTTCCTGAAAAGTTCTTATCAAAATAAAATGATGATTTCGAAAACAAGAACATTATGGAGGTGCACAGTTCACATTAGTACATGATTTTCAATATTATATGGAGGTGTTGCACTTTTTAAATGTTTCCCCCCCTGCAAATCTACAGAATTAAGAGGACTAGATCTACTGACTGGTGTATTTACCATCAGACAAATCAAAGCTGCGACAAACAACTTTGATGTTGCAAATAAAATCGGGGAAGGTGGTTTTGGCTCTGTCTACAAGGTGCATCTCAATCTGATCACTCACAAGCTTTCTACTCACTCTCCACAAACCAATTACCTAGACCCTTTTTTGTTTAGCTACAACATCTAGAAATGGATTTTATGTATAGACAGCTATGACCTTTTTATATCTTCTTCTGTTTTCTTAATTAATAAATAGGGCACACTACTGGACGGTACAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCAAAACAAGGAAACCGCGAGTTTGTAAATGAGATAGGTATGATCTCTGGTTTACAGCACCCAAATCTTGTCAAACTATATGGATGTTGTGCTGAA-GGAAATCAACTTCTGTTGGTGTATGAA</genome_strand>
        <mrna_strand>GTACAAGGCAACTAACATATCTTCAATTAAGGGACATAACTCTGAACTATACACGACAGCTCGGCTCTCAGCTTTATCTCTAACTTACTATGGACGTTGTTTAGCAAATGGAAACTACACTGTGACACTGCACTTTGCAGAGATTGTTATAAGAGATAACCGATCTTTCCAGAGTCTCGGAAAACGGATGTTTGATGTCTATATTCAG........................................................................GGTGAGAGGAAGCTCAAAGATTTTGACATTAGAACTGCTGCTGGAGGAGTTGATGAAGCTTTGACAAGAAAGTTCAATACATCTGTAGAAGATGGCATTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAACAGCTGTCCCTAGAAAAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTA...............................................................................................................................................................................................................................................................ATTTCAAGCCCCCTTCAAATCACAAAAAGATGGCTCACATCATTGCTGGAGTAGTGGCGTCCTCATTAGTTCTCCTTTTTACAATATTCTTTGTTGCTTGGAGGAGAAGCAGAAACAGTATATCAAAGGAAGAAG..............................................................................................................................................................................................................................AATTAAGAGGACTAGATCTACTGACTGGTGTA-TTAACATCAGACAAATCATAGCCGCGACAAACAACTTTGATGCTGCAAATAAAATTGGGGGAAGTGGTTTTGGCTCTGTCTACAAG...........................................................................................................................................................................................................................................................................CACCCAAATCTTGTCAAACTATATGGATGNTGTGCTGAANGGAAATC-ACTTCTATTGGTGTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475396" ref_strand="+" ref_description="SGN-E475396 [cSTB-38-L12]">
      <seq>cttggagaacaatagcctcgcccgtgctttatttggtccagaagaacatcatctccaaatagactggccaacaaggcaaaaaatctgcattgggatagcaaaaggcttagcttttctacacgaggaatcgtcattaaaaattgttcatagggacatcaaagcaacaaatgtacttcttgacaagaaactaaacccaaagatctctgactttggtctggccaaacttgacgatgaggataaaacacatatcagcactagaattgctggaaccataggatatatggcacctgaatatgcactatggggctacttaacctacaaagcagatgtctacagctttggagttgttgcgttagagattgttgctgggaagaacaatatgaaatatcgccccaatgagaaatttgtttgccttctagattgggcccttgttctaaaaagggaaggaaaactgatggaactagtagatgaaacattgagttcagatttcaagaaggatgaggctctaaggatgataaacgtagcccttctatgtaccaatacatctccagcacttaggccaaacatgtctgcagtagtcagcattcttgaagatcatattgaccttnctgagtttagcttggaatcaagatcccatgatgatgatgatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="95802" stop="97852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96102" g_stop="96136" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96137" i_stop="96330" i_length="194">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.688" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96331" g_stop="96568" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="273" r_length="238" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96569" i_stop="97098" i_length="530">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97099" g_stop="97249" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="424" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97250" i_stop="97323" i_length="74">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97324" g_stop="97552" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="654" r_length="230" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E475396" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96102" e_stop="96136"/>
          <exon e_start="96331" e_stop="96568"/>
          <exon e_start="97099" e_stop="97249"/>
          <exon e_start="97324" e_stop="97552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAGAACAATAGCCTCGCCCTTGCTTTATTTGGTTAGTACTATCCTTGCTCATTGTTTTCAGTTACAACTTACAAGTCAAACAGAAAATCAGCTAAATGAAATAAAGATAAATATTGTTCTTTTGTAATTAATGAAAGAGTTCAAAATGAGAAGCCAATATATGATTGTATATGCGTGTGAAAAAGAGAAGGTATGCATAGATTCTTAGTTCTCACTAAAATGCAGGTTCAGACGAACACCGTCTCCAAATAGAGTGGCCAACTAGGCAAAATATCTGCATTGGGATAGCAAAAGGCTTAGCTTTCCTACACGAAGAATCGTCATTAAAAATTGTTCATAGGGATATGAAAGCAACAAATGTACTTCTTGACAAGAAACTAAACCCGAAGATCTCTGATTTTGGTCTGGCCAAACTTGATGATGAGGATAAAACACATATCAGCACTAGAATTGCTGGAACCATGTGAGTTTTGTGACAAGTTTTCTTGTTCATGTTTATGTTTTGTGTTCATTTAGTAAGAAATAGATATTATGGCACAGTAGAATTGACATTGCAGCATAAACTGATTGATGTACAGACGTATGTTGTTCTCATCCAATGCATCATATATACATTTATGATTGCTAGAACCCTTACATTCTCTCTTTCTTGCATTTTCGATATGTTATACAAGGTAACTAGCAATAGTTTACTGATGCTTAACCAAAAAGGGTGGTGAAGTTTCAAGGACTAGTACATAATGGCCTGGCTGCCCTTAAAGAAAGACTCATTTGAAAGCTTGATCATATTTCTGGTATTGATTGCATTACTTCAATTGAGTGATAGAAATGGTTTCTGGCCTAATCCTCTTTAAATCTTAAATCTTCCTACGAGCTTAACCTGTATCTCATCCCATTCAACCATTCTTCATATACTGAAATATCAGGCATGAAGTTGATGCCACATTTACAAATAATATATGCATGAATCTAAAGTTTCACTCTGTTCTGCAGAGGATATATGGCACCTGAATATGCACTATGGGGCTACTTAACCTACAAAGCAGATGTCTACAGCTTTGGAGTTGTTGCGTTAGAGATTGTTGCTGGGAAGAACAATATGAAATATCGCCCCAATGAGAAATTTGTTTGCCTTCTAGATTGGGTAACAAATCATTATCCCTGATATCAATATCTATGTTCCAAACTTTTGAACTAGTATATTTGCATTTTATTCAGGCCCTTGTCCTACAAAAGCATGGAAAACTGATGGAACTAGTGGATGAAACATTAAATTCAGATTTCAAGAAGGATGAGGCTCTAAGGATGATAAACGTAGCTCTGCTATGTACCAATCCATCTCCAGCACTTAGGCCAACCATGTCTGCAGTAGTCAGCATTCTTGAAGATCATCTTGACCTTCCTGAGTTTAACTTGGAATCAAGATCCCATGATGATGA-GCTCAAGT</genome_strand>
        <mrna_strand>CTTGGAGAACAATAGCCTCGCCCGTGCTTTATTTG..................................................................................................................................................................................................GTCCAGAAGAACATCATCTCCAAATAGACTGGCCAACAAGGCAAAAAATCTGCATTGGGATAGCAAAAGGCTTAGCTTTTCTACACGAGGAATCGTCATTAAAAATTGTTCATAGGGACATCAAAGCAACAAATGTACTTCTTGACAAGAAACTAAACCCAAAGATCTCTGACTTTGGTCTGGCCAAACTTGACGATGAGGATAAAACACATATCAGCACTAGAATTGCTGGAACCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATATGGCACCTGAATATGCACTATGGGGCTACTTAACCTACAAAGCAGATGTCTACAGCTTTGGAGTTGTTGCGTTAGAGATTGTTGCTGGGAAGAACAATATGAAATATCGCCCCAATGAGAAATTTGTTTGCCTTCTAGATTGG..........................................................................GCCCTTGTTCTAAAAAGGGAAGGAAAACTGATGGAACTAGTAGATGAAACATTGAGTTCAGATTTCAAGAAGGATGAGGCTCTAAGGATGATAAACGTAGCCCTTCTATGTACCAATACATCTCCAGCACTTAGGCCAAACATGTCTGCAGTAGTCAGCATTCTTGAAGATCATATTGACCTTNCTGAGTTTAGCTTGGAATCAAGATCCCATGATGATGATGATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374027" ref_strand="+" ref_description="SGN-E374027 [TUS-33-G3](-)">
      <seq>agtactagttgcaggccaagtgatcagacagtttaccttcttgattcggcttacgtgttgcaagagcagggaaatttgatggatctagttgatccaaaacttggaacagattattcttggacagaagctaaaaccattctggaattagcgatgatgtgcactaatccatcaccaactctcaggccaaccacgtctgaggtagtgaaagttattgaaggaaaaactaaaatcaagaccacatcttcaacagtccggcgttcaacagacgagattgcattgactaaggccatggctgcactctctcagccttctccatctgaaagctattctaccgcagggccatcagaagctactcctcccatatctaacagcaacaatattaccaatgaaatttgaattcaacttctcccattcatgaatatttcccagatgattactgtacttagacaatgaagtcaaggaggcaatgaggcttcagcatgatttttatcttgttttgaataagaaaacttttggtctgacatatcagtataagatttcattctactacattgtcgatgggcatcaagattgtaccagatgattgatttcactgtatccattgcctaattacattaggttttgggcctctcactctttctcaatgactatatactaacacttacttcaaaaaaccttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="-" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="101360" stop="99982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101060" g_stop="101013" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101012" i_stop="100903" i_length="110">
            <donor d_prob="0.580" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100902" g_stop="100282" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="669" r_length="621" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="690"/>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="-" ref_id="SGN-E374027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101060" e_stop="101013"/>
          <exon e_start="100902" e_stop="100282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTAGTTGCAGGCCAAGTGATCAGACAGTTTACCTTCTTGATTCGGTAAGGCTTCAGAAGAGAAGTTTTCAATTTCATTCACTGATGCACATGCCTAATAAACAGTTGCCATTGTCTTTTTAGTTGAATGACTTTTCTAATTTGATCGATGTCAGGCTTACGTGTTGCAAGAGCAGGGAAATTTGATGGATCTAGTTGATCCAAAACTTGGAACAGATTATTCTTGGACAGAAGCTAAAACCATTCTGGAATTAGCGATGATGTGCACTAATCCATCACCAACTCTCAGGCCAACCACGTCTGAGGTAGTGAAAGTTATTGAAGGAAAAACTAAAATCAAGACCACATCTTCAACAGTCCGGCGTTCAACAGACGAGATTGCATTGACTAAGGCCATGGCTGCACTCTCTCAGCCTTCTCCATCTGAAAGCTATTCTACCGCAGGGCCATCAGAAGCTACTCCTCCCATATCTAACAGCAACAATATTACCAATGAAATTTGAATTCAACTTCTCCCATTCATGAATATTTCCCAGATGATTACTGTACTTAGACAATGAAGTCAAGGAGGCAATGAGGCTTCAGCATGATTTTTATCTTGTTTTGAATAAGAAAACTTTTGGTCTGACATATCAGTATAAGATTTCATTCTACTACATTGTCGATGGGCATCAAGATTGTACCAGATGATTGATTTCACTGTATCCATTGCCTAATTACATTAGGTTTTGGGCCTCTCACTCTTTCTCAATGACTATATACTAACACTTACTTCA</genome_strand>
        <mrna_strand>AGTACTAGTTGCAGGCCAAGTGATCAGACAGTTTACCTTCTTGATTCG..............................................................................................................GCTTACGTGTTGCAAGAGCAGGGAAATTTGATGGATCTAGTTGATCCAAAACTTGGAACAGATTATTCTTGGACAGAAGCTAAAACCATTCTGGAATTAGCGATGATGTGCACTAATCCATCACCAACTCTCAGGCCAACCACGTCTGAGGTAGTGAAAGTTATTGAAGGAAAAACTAAAATCAAGACCACATCTTCAACAGTCCGGCGTTCAACAGACGAGATTGCATTGACTAAGGCCATGGCTGCACTCTCTCAGCCTTCTCCATCTGAAAGCTATTCTACCGCAGGGCCATCAGAAGCTACTCCTCCCATATCTAACAGCAACAATATTACCAATGAAATTTGAATTCAACTTCTCCCATTCATGAATATTTCCCAGATGATTACTGTACTTAGACAATGAAGTCAAGGAGGCAATGAGGCTTCAGCATGATTTTTATCTTGTTTTGAATAAGAAAACTTTTGGTCTGACATATCAGTATAAGATTTCATTCTACTACATTGTCGATGGGCATCAAGATTGTACCAGATGATTGATTTCACTGTATCCATTGCCTAATTACATTAGGTTTTGGGCCTCTCACTCTTTCTCAATGACTATATACTAACACTTACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714571" ref_strand="+" ref_description="SGN-E714571 [FB11DC08]">
      <seq>tacaactttggggttgttacgcttgaaattgtgagcgggagaaacagtactagttgcaggccaagtgatcagacagtttaccttcttgattcggcttacgtgttgcaagagcagggaaatttgatggatctagttgatccaaaacttggaacagattattcttggacagaagctaaaaccattctggaattagcgatgatgtgcactaatccatcaccaactctcaggccaaccacgtctgaggtagtgaaagttattgaaggaaaaactaaaatcaagaccacatcttcaacagtccggcgttcaacagacgagattgcattgactaaggccatggctgcactctctcagccttctccatctgaaagctattctaccgcagggccatcagaagctactcctcccatatctaacagcaacaatattaccaatgagatttgaattcaacttctcccattcatgaatatttcccagatgattactgtacttagacaatgaagtcaaggaggcaatgaggcttcagcatgatttttatcttgttttgaataagaaaacttttggtctgacatatcagtataagatttcattctactacattgtcgatgggcatcaagattgtaccacatgattgatttcactgtatccattgcctaattacattaggttttgggcctctcactctttctcaatgactatatactaacacttacttctngaggcagtgtaaaccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="-" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="101405" stop="99983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101105" g_stop="101013" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101012" i_stop="100903" i_length="110">
            <donor d_prob="0.580" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100902" g_stop="100283" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="713" r_length="620" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="-" ref_id="SGN-E714571" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101105" e_stop="101013"/>
          <exon e_start="100902" e_stop="100283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCTTTGGGGTTGTTACGCTTGAAATTGTGAGCGGGAGAAACAGTACTAGTTGCAGGCCAAGTGATCAGACAGTTTACCTTCTTGATTCGGTAAGGCTTCAGAAGAGAAGTTTTCAATTTCATTCACTGATGCACATGCCTAATAAACAGTTGCCATTGTCTTTTTAGTTGAATGACTTTTCTAATTTGATCGATGTCAGGCTTACGTGTTGCAAGAGCAGGGAAATTTGATGGATCTAGTTGATCCAAAACTTGGAACAGATTATTCTTGGACAGAAGCTAAAACCATTCTGGAATTAGCGATGATGTGCACTAATCCATCACCAACTCTCAGGCCAACCACGTCTGAGGTAGTGAAAGTTATTGAAGGAAAAACTAAAATCAAGACCACATCTTCAACAGTCCGGCGTTCAACAGACGAGATTGCATTGACTAAGGCCATGGCTGCACTCTCTCAGCCTTCTCCATCTGAAAGCTATTCTACCGCAGGGCCATCAGAAGCTACTCCTCCCATATCTAACAGCAACAATATTACCAATGAAATTTGAATTCAACTTCTCCCATTCATGAATATTTCCCAGATGATTACTGTACTTAGACAATGAAGTCAAGGAGGCAATGAGGCTTCAGCATGATTTTTATCTTGTTTTGAATAAGAAAACTTTTGGTCTGACATATCAGTATAAGATTTCATTCTACTACATTGTCGATGGGCATCAAGATTGTACCAGATGATTGATTTCACTGTATCCATTGCCTAATTACATTAGGTTTTGGGCCTCTCACTCTTTCTCAATGACTATATACTAACACTTACTTC</genome_strand>
        <mrna_strand>TACAACTTTGGGGTTGTTACGCTTGAAATTGTGAGCGGGAGAAACAGTACTAGTTGCAGGCCAAGTGATCAGACAGTTTACCTTCTTGATTCG..............................................................................................................GCTTACGTGTTGCAAGAGCAGGGAAATTTGATGGATCTAGTTGATCCAAAACTTGGAACAGATTATTCTTGGACAGAAGCTAAAACCATTCTGGAATTAGCGATGATGTGCACTAATCCATCACCAACTCTCAGGCCAACCACGTCTGAGGTAGTGAAAGTTATTGAAGGAAAAACTAAAATCAAGACCACATCTTCAACAGTCCGGCGTTCAACAGACGAGATTGCATTGACTAAGGCCATGGCTGCACTCTCTCAGCCTTCTCCATCTGAAAGCTATTCTACCGCAGGGCCATCAGAAGCTACTCCTCCCATATCTAACAGCAACAATATTACCAATGAGATTTGAATTCAACTTCTCCCATTCATGAATATTTCCCAGATGATTACTGTACTTAGACAATGAAGTCAAGGAGGCAATGAGGCTTCAGCATGATTTTTATCTTGTTTTGAATAAGAAAACTTTTGGTCTGACATATCAGTATAAGATTTCATTCTACTACATTGTCGATGGGCATCAAGATTGTACCACATGATTGATTTCACTGTATCCATTGCCTAATTACATTAGGTTTTGGGCCTCTCACTCTTTCTCAATGACTATATACTAACACTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699399" ref_strand="+" ref_description="SGN-E699399 [FA09DG04]">
      <seq>ccaccaaaacaccaactgtctcctgcacttaacgttgtgatagcagtatcatcactgtcttttcttgctctacttctgcttttactaaggaaattgggttatcttggcggaaaaagatcatctaaggaagaactaaaaacaacagaattgttcccgggaggagtttacacctttcgtcaaataaaagatgctactcagaacttcaatgttgtgaacaaattaggcgaaggaggttttggacctgtttataagggcgttctccctgatgggactacaattgcagttaaacagctatcaggaaaatccaagcaaggaatacgtgagtttgtaaatgaaattggcacgatttcagctctgcaacatccaaatcttgtgaagttaatgggatgctgtgcacaatacaatgagctcctactcatttatgaatacatggagaataattctcttgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="-" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="102650" stop="101281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102350" g_stop="102221" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102220" i_stop="102109" i_length="112">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102108" g_stop="101987" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="252" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101986" i_stop="101783" i_length="204">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101782" g_stop="101581" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="454" r_length="202" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="-" ref_id="SGN-E699399" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102350" e_stop="102221"/>
          <exon e_start="102108" e_stop="101987"/>
          <exon e_start="101782" e_stop="101581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCAAAACACCAACTGTCTCCTGCACTTAAGGCTGTGATAGCAGTATCATCACTGTCTTTTCTTGCTCTACTTCTGCTTTTACTAAGGAAATTGGGTTATCTTGGCGGAAAAAGATCATCTAAGGAAGGTTAGACACAATTACATATGGAGTTTGGTTTGTTTCGGTTCTTATTTTAATATAAATTTGTATAACTCACTAAAATAAAATTATGTTTGCTTCTTTTGTGAAATGCTAACAGAACTAAAAACAACAGAATTGTTCCCGGGAGGAGTTTACACCTTTCGTCAAATAAAAGATGCTACTCAGAACTTCAATGTTGTGAACAAATTAGGTGAAGGAGGTTTTGGACCTGTTTATAAGGTTAGTTTTTGTTGGACTTTTAGTATTCTGTTTATTCATTATATCATTCCCATGACCCTGGATTGAGCTGCTGCATATATAAGCATATAGATACGTCCTTGGCGCTTTTTTTCCTGAAGGGATTTTATATACTTTATCTGTCCCTGCTTACATAGTTATCATGTTGCCAATTCTAAATAATAGGGGTGTCTCTCATCAATACAGGGCGTTCTCCCTGATGGGACTACAATTGCAGTTAAACAGCTATCAGGAAAATCAAAGCAAGGAATACGTGAGTTTGTAAATGAAATTGGCACGATTTCAGCTCTGCAACATCCAAATCTTGTGAAGTTAATGGGATGCTGTGCAGAAGACAATGAGCTCCTACTCATTTATGAATACATGGAGAATAATTCTCTTGAACATG</genome_strand>
        <mrna_strand>CCACCAAAACACCAACTGTCTCCTGCACTTAACGTTGTGATAGCAGTATCATCACTGTCTTTTCTTGCTCTACTTCTGCTTTTACTAAGGAAATTGGGTTATCTTGGCGGAAAAAGATCATCTAAGGAAG................................................................................................................AACTAAAAACAACAGAATTGTTCCCGGGAGGAGTTTACACCTTTCGTCAAATAAAAGATGCTACTCAGAACTTCAATGTTGTGAACAAATTAGGCGAAGGAGGTTTTGGACCTGTTTATAAG............................................................................................................................................................................................................GGCGTTCTCCCTGATGGGACTACAATTGCAGTTAAACAGCTATCAGGAAAATCCAAGCAAGGAATACGTGAGTTTGTAAATGAAATTGGCACGATTTCAGCTCTGCAACATCCAAATCTTGTGAAGTTAATGGGATGCTGTGCACAATACAATGAGCTCCTACTCATTTATGAATACATGGAGAATAATTCTCTTGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374028" ref_strand="+" ref_description="SGN-E374028 [TUS-33-G3]">
      <seq>atgcattttcgtttacagagaatgctgtcagtcaatattgacttgtgtcaacacatctagttctaggacaaatctctgatatttgttaaataaggattaaactaacaaaatctgaaatacagtccataacagcagttttgagctgattacacaacttgttcatggagttatcggttgaacatgactatcatatggcagaaatacttatgatctgaactgtatgtaagaagaaaagaaacgaaaactgcaatattgcatatcgaattgtcaaatgatttcagggacctacgcgccaattattttgttggtgaattgcctccaagcttcatgaagttggtgaacttagaatactttggggctcaagggaataacttatctggtaagtttccaacatttatagccaactggacgcaactcgagacgttggatctgttaggaaataattttgaaggctcctggccaaaggaaatctcatcattgagaagtctcggttacctatcactcagtaatgtagtcacaagaggaggtgcatatgattttcccgatctatcgcgtatgacttcgttggaatacttgatattgaggaaatgttcacttcgtggtcccattccgggatatatttgggagcttaaagaactacagtacctggacttgagcttcaacgagttatctggacaactgccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="-" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="106836" stop="104907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106536" g_stop="106184" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106183" i_stop="106084" i_length="100">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106083" g_stop="106012" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="425" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106011" i_stop="105933" i_length="79">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105932" g_stop="105861" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="497" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105860" i_stop="105762" i_length="99">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105761" g_stop="105684" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="575" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105683" i_stop="105591" i_length="93">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105590" g_stop="105519" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="647" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105518" i_stop="105246" i_length="273">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105245" g_stop="105207" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="686" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="-" ref_id="SGN-E374028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106536" e_stop="106184"/>
          <exon e_start="106083" e_stop="106012"/>
          <exon e_start="105932" e_stop="105861"/>
          <exon e_start="105761" e_stop="105684"/>
          <exon e_start="105590" e_stop="105519"/>
          <exon e_start="105245" e_stop="105207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATTTTCGTTTACAGAGAATGCTGTCAGTCAATATTGACTTGTGTCAACACATCTAGTTCTAGGACAAATCTCTGATATTTGTTAAATAAGGATTAAACTAACAAAATCTGAAATACAGTCCATAACAGCAGTTTTGAGCTGATTACACAACTTGTTCATGGAGTTATCGGTTGAACATGACTATCATATGGCAGAAATACTTATGATCTGAACTGTATGTAAGAAGAAAAGAAACGAAAACTGCAATATTGCATATCGAATTGTCAAATGATTTCAGGGACCTACGCGCCAATTATTTTGTTGGTGAATTGCCTCCAAGCTTCATGAAGTTGGTGAACTTAGAATACTTGTAAGTGCATGTTGACTCTGATTTTCTTTGGATAATCAACTTGTCAATTGCAACCACCCTCGATCGCTTTATGTTTTCTCTTCTTATTTTTATGCTGTAGTGGGGCTCAAGGGAATAACTTATCTGGTAAGTTTCCAACATTTATAGCCAACTGGACGCAACTCGAGACGTTGTAAGCCCAATTATGTGAAAGCAATATTATAATAAGACTAGTTTAATTTAGATATCAATTTAACTTCTTTTCTTTGTAGGGATCTGTTAGGAAATAATTTTGAAGGCTCCTGGCCAAAGGAAATCTCATCATTGAGAAGTCTCGGTTACCTGTAAGATTTTTGTTTTGAAGATCGTAATTTGTAGTGTGAAACATTTTGAAATTTTTGGCTGATATTTTCTCCCAATTTTATAATCTTATATATGCCTAGATCACTCAGTAATGTAGTCACAAGAGGAGGTGCATATGATTTTCCCGATCTATCGCGTATGACTTCGTTGGAATACTTGTAGGCTTGATATCCTTTGACTCCTTTTGAATTAAACAAATGTTTCTCAATGTCATGTGAAAATATACTACTCATGAATTACGGTGATTCCAGGATATTGAGGAAATGTTCACTTCGTGGTCCCATTCCGGGATATATTTGGGAGCTTAAAGAACTACAGTACCTGTAAGATGATATATCTGTCAATTTTCTTCTAACCAACTTCATTTCCCTTGATCGATCTTTGGTGTCTGTGTTTCTCTTTTTCTGTGTGGCAACCGTATCATGTTGTAAATGTAGAAGTTGCATCTTGATCATTTAGTGAAAGACTGCCTTATTTTAGTCCACACTCTAAACATTTTTCTTTAGACCAGACACACGAAAATGTACATTTTTTTATGTAACTTGTAGATAAAGACATGATTGAATGATTACATCTTTCTCTTTTCTCTGATATAGGGACTTGAGCTTCAACGAGTTATCTGGACAACTGCCAAA</genome_strand>
        <mrna_strand>ATGCATTTTCGTTTACAGAGAATGCTGTCAGTCAATATTGACTTGTGTCAACACATCTAGTTCTAGGACAAATCTCTGATATTTGTTAAATAAGGATTAAACTAACAAAATCTGAAATACAGTCCATAACAGCAGTTTTGAGCTGATTACACAACTTGTTCATGGAGTTATCGGTTGAACATGACTATCATATGGCAGAAATACTTATGATCTGAACTGTATGTAAGAAGAAAAGAAACGAAAACTGCAATATTGCATATCGAATTGTCAAATGATTTCAGGGACCTACGCGCCAATTATTTTGTTGGTGAATTGCCTCCAAGCTTCATGAAGTTGGTGAACTTAGAATACTT....................................................................................................TGGGGCTCAAGGGAATAACTTATCTGGTAAGTTTCCAACATTTATAGCCAACTGGACGCAACTCGAGACGTT...............................................................................GGATCTGTTAGGAAATAATTTTGAAGGCTCCTGGCCAAAGGAAATCTCATCATTGAGAAGTCTCGGTTACCT...................................................................................................ATCACTCAGTAATGTAGTCACAAGAGGAGGTGCATATGATTTTCCCGATCTATCGCGTATGACTTCGTTGGAATACTT.............................................................................................GATATTGAGGAAATGTTCACTTCGTGGTCCCATTCCGGGATATATTTGGGAGCTTAAAGAACTACAGTACCT.................................................................................................................................................................................................................................................................................GGACTTGAGCTTCAACGAGTTATCTGGACAACTGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300684" ref_strand="+" ref_description="SGN-E300684 [cLET-45-P12]">
      <seq>atgcattttcgtttacagagaatgctgtcagtcaatattgacttgtgtcaacacatctagttctaggacaaatctctgatatttgttaaataaggattaaactaacaaaatctgaaatacagtccataacagcagttttgagctgattacacaacttgttcatggagttatcggttgaacatgactatcatatggcagaaatacttatgatctgaactgtatgtaagaagaaaagaaacgaaaactgcaatattgcatatcgaattgtcaaatgatttcagggacctacgcgccaattattttgttggtgaattgcctccaagcttcatgaagttggtgaacttagaatactttggggctcaagggaataacttatctggtaagtttccaacatttatagccaactggacgcaactcgagacgttggatctgttatgaaataattttgaaggctcctggccaaaggaaatctcatcattgagaagtctcggttacctatcactcagtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="-" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="106836" stop="105557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106536" g_stop="106184" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106183" i_stop="106084" i_length="100">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106083" g_stop="106012" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="425" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106011" i_stop="105933" i_length="79">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105932" g_stop="105861" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="497" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105860" i_stop="105762" i_length="99">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105761" g_stop="105748" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="511" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="-" ref_id="SGN-E300684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106536" e_stop="106184"/>
          <exon e_start="106083" e_stop="106012"/>
          <exon e_start="105932" e_stop="105861"/>
          <exon e_start="105761" e_stop="105748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATTTTCGTTTACAGAGAATGCTGTCAGTCAATATTGACTTGTGTCAACACATCTAGTTCTAGGACAAATCTCTGATATTTGTTAAATAAGGATTAAACTAACAAAATCTGAAATACAGTCCATAACAGCAGTTTTGAGCTGATTACACAACTTGTTCATGGAGTTATCGGTTGAACATGACTATCATATGGCAGAAATACTTATGATCTGAACTGTATGTAAGAAGAAAAGAAACGAAAACTGCAATATTGCATATCGAATTGTCAAATGATTTCAGGGACCTACGCGCCAATTATTTTGTTGGTGAATTGCCTCCAAGCTTCATGAAGTTGGTGAACTTAGAATACTTGTAAGTGCATGTTGACTCTGATTTTCTTTGGATAATCAACTTGTCAATTGCAACCACCCTCGATCGCTTTATGTTTTCTCTTCTTATTTTTATGCTGTAGTGGGGCTCAAGGGAATAACTTATCTGGTAAGTTTCCAACATTTATAGCCAACTGGACGCAACTCGAGACGTTGTAAGCCCAATTATGTGAAAGCAATATTATAATAAGACTAGTTTAATTTAGATATCAATTTAACTTCTTTTCTTTGTAGGGATCTGTTAGGAAATAATTTTGAAGGCTCCTGGCCAAAGGAAATCTCATCATTGAGAAGTCTCGGTTACCTGTAAGATTTTTGTTTTGAAGATCGTAATTTGTAGTGTGAAACATTTTGAAATTTTTGGCTGATATTTTCTCCCAATTTTATAATCTTATATATGCCTAGATCACTCAGTAATG</genome_strand>
        <mrna_strand>ATGCATTTTCGTTTACAGAGAATGCTGTCAGTCAATATTGACTTGTGTCAACACATCTAGTTCTAGGACAAATCTCTGATATTTGTTAAATAAGGATTAAACTAACAAAATCTGAAATACAGTCCATAACAGCAGTTTTGAGCTGATTACACAACTTGTTCATGGAGTTATCGGTTGAACATGACTATCATATGGCAGAAATACTTATGATCTGAACTGTATGTAAGAAGAAAAGAAACGAAAACTGCAATATTGCATATCGAATTGTCAAATGATTTCAGGGACCTACGCGCCAATTATTTTGTTGGTGAATTGCCTCCAAGCTTCATGAAGTTGGTGAACTTAGAATACTT....................................................................................................TGGGGCTCAAGGGAATAACTTATCTGGTAAGTTTCCAACATTTATAGCCAACTGGACGCAACTCGAGACGTT...............................................................................GGATCTGTTATGAAATAATTTTGAAGGCTCCTGGCCAAAGGAAATCTCATCATTGAGAAGTCTCGGTTACCT...................................................................................................ATCACTCAGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="118352" stop="119247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118652" g_stop="118973" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118652" e_stop="118973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAGTATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCATTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACA-AAATTATACACTTCTGTATATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="118352" stop="119247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118652" g_stop="118957" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118652" e_stop="118957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAGTATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCATTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0100F12-89oa5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0100F12.1" temp_strand="+" temp_description="C02SLm0100F12.1  AC226522.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0100F12 sequenced_by:kribb upload_account_name:korea">
        <position start="118353" stop="119399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118653" g_stop="119099" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0100F12.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0100F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118653" e_stop="119099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAGTATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCATTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACA-AAATTATACACTTCTGTATATAAAGCGAGAGAGGCGAGCGAGAACGAAGAGTGGCGAGTGAGATTTTTGGGAGAGAGACG-CTGACAAATTTTAGCTAATATTTGCTATGCAGCACAATTAAATCAAACCCTAACTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>54</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8987" PGL_stop="12921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8987" e_stop="9049"/>
            <exon e_start="11883" e_stop="12026"/>
            <exon e_start="12222" e_stop="12340"/>
            <exon e_start="12421" e_stop="12921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.146" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8987" e_stop="9049" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="9050" i_stop="11882" i_length="2833"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11883" e_stop="12026" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.146">
            <gDNA_intron_boundary i_start="12027" i_stop="12221" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12222" e_stop="12340" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12341" i_stop="12420" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12421" e_stop="12921" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8987" stop="9049"/>
              <exon start="11883" stop="12026"/>
              <exon start="12222" stop="12340"/>
              <exon start="12421" stop="12921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8988" stop="9049"/>
              <exon start="11883" stop="12026"/>
              <exon start="12222" stop="12340"/>
              <exon start="12421" stop="12538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATCAGAATCCCATCCAGGGGGCATTACGGTCCTCTAATATCTGCAATCTCACTCAAACCAA : CTTTTGGATCTTGTTCAGAGGAAGATAAAAAGAGTGCGACTGTTTTTGTTATTGTTGGAGTAGTGACTACATGCATTTTCCTGTTATTAATAAGCACACTTTGGTGGAAAGGATATCTTCAATGCAAAAAGAAACAGAGAACAG : ATTTAGAGGGCATGGAGCTGCAGACCATTTCCTTTACTTTAAAGCAAATAAAGGCTGCAACTAATAACTTTGATGCTTCTAACAAGATAGGGGAAGGTGGTTTTGGTGCAGTTTTCAAG : GGCCGGTTATCTGATGGTACTTTAGTTGCAGTGAAGCAGCTCTCGCGTCAATCAAGACAGGGGAACCGCGAATTTTTGAATGAGATTGGCATGATTTCTTGCTTGCAACACCCAAATCTTGTTAAGCTGCATGGTTGCTGCATTGAAGGGACTGAATTACTGCTCGTATATGAATACTTGGAAAACAATAGCCTCGCTCGCGCATTATTTCGTAAGATATTCAATCTCTTTTAAAAAAGTTCCTAAACTATTACCAACTCTCTAGGAAATGTCCATTAAAATGTTAGCATGTTGGACAACTTTAGATTCAGAGAAAAGTCAGTTGATGCTTGATTGGCCGACAAGGTTCAAGATTTGTGTTGGGATCGCTAAAGGTCTGGCTTTCCTTCATGAGGAATCAAGCCTTAAGATTGTACACAGAGACATTAAAGCTACTAATGTACTGCTAGATAGAGAACTAAATCCCAAAATTTCGGACTTTGGGCTAGCTAAACTTACTGA</gDNA_template>
            <first_frame> L  S  E  S  H  P  G  G  I  T  V  L  *  Y  L  Q  S  H  S  N  Q  :  L  L  D  L  V  Q  R  K  I  K  R  V  R  L  F  L  L  L  L  E  *  *  L  H  A  F  S  C  Y  *  *  A  H  F  G  G  K  D  I  F  N  A  K  R  N  R  E  Q  :  I  *  R  A  W  S  C  R  P  F  P  L  L  *  S  K  *  R  L  Q  L  I  T  L  M  L  L  T  R  *  G  K  V  V  L  V  Q  F  S  R :   A  G  Y  L  M  V  L  *  L  Q  *  S  S  S  R  V  N  Q  D  R  G  T  A  N  F  *  M  R  L  A  *  F  L  A  C  N  T  Q  I  L  L  S  C  M  V  A  A  L  K  G  L  N  Y  C  S  Y  M  N  T  W  K  T  I  A  S  L  A  H  Y  F  V  R  Y  S  I  S  F  K  K  V  P  K  L  L  P  T  L  *  E  M  S  I  K  M  L  A  C  W  T  T  L  D  S  E  K  S  Q  L  M  L  D  W  P  T  R  F  K  I  C  V  G  I  A  K  G  L  A  F  L  H  E  E  S  S  L  K  I  V  H  R  D  I  K  A  T  N  V  L  L  D  R  E  L  N  P  K  I  S  D  F  G  L  A  K  L  T   </first_frame>
            <second_frame>  Y  Q  N  P  I  Q  G  A  L  R  S  S  N  I  C  N  L  T  Q  T  N :   F  W  I  L  F  R  G  R  *  K  E  C  D  C  F  C  Y  C  W  S  S  D  Y  M  H  F  P  V  I  N  K  H  T  L  V  E  R  I  S  S  M  Q  K  E  T  E  N  R :   F  R  G  H  G  A  A  D  H  F  L  Y  F  K  A  N  K  G  C  N  *  *  L  *  C  F  *  Q  D  R  G  R  W  F  W  C  S  F  Q   : G  P  V  I  *  W  Y  F  S  C  S  E  A  A  L  A  S  I  K  T  G  E  P  R  I  F  E  *  D  W  H  D  F  L  L  A  T  P  K  S  C  *  A  A  W  L  L  H  *  R  D  *  I  T  A  R  I  *  I  L  G  K  Q  *  P  R  S  R  I  I  S  *  D  I  Q  S  L  L  K  K  F  L  N  Y  Y  Q  L  S  R  K  C  P  L  K  C  *  H  V  G  Q  L  *  I  Q  R  K  V  S  *  C  L  I  G  R  Q  G  S  R  F  V  L  G  S  L  K  V  W  L  S  F  M  R  N  Q  A  L  R  L  Y  T  E  T  L  K  L  L  M  Y  C  *  I  E  N  *  I  P  K  F  R  T  L  G  *  L  N  L  L  </second_frame>
            <third_frame>   I  R  I  P  S  R  G  H  Y  G  P  L  I  S  A  I  S  L  K  P   : T  F  G  S  C  S  E  E  D  K  K  S  A  T  V  F  V  I  V  G  V  V  T  T  C  I  F  L  L  L  I  S  T  L  W  W  K  G  Y  L  Q  C  K  K  K  Q  R  T   : D  L  E  G  M  E  L  Q  T  I  S  F  T  L  K  Q  I  K  A  A  T  N  N  F  D  A  S  N  K  I  G  E  G  G  F  G  A  V  F  K  :  G  R  L  S  D  G  T  L  V  A  V  K  Q  L  S  R  Q  S  R  Q  G  N  R  E  F  L  N  E  I  G  M  I  S  C  L  Q  H  P  N  L  V  K  L  H  G  C  C  I  E  G  T  E  L  L  L  V  Y  E  Y  L  E  N  N  S  L  A  R  A  L  F  R  K  I  F  N  L  F  *  K  S  S  *  T  I  T  N  S  L  G  N  V  H  *  N  V  S  M  L  D  N  F  R  F  R  E  K  S  V  D  A  *  L  A  D  K  V  Q  D  L  C  W  D  R  *  R  S  G  F  P  S  *  G  I  K  P  *  D  C  T  Q  R  H  *  S  Y  *  C  T  A  R  *  R  T  K  S  Q  N  F  G  L  W  A  S  *  T  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8989" stop="9049"/>
                    <exon start="11883" stop="12026"/>
                    <exon start="12222" stop="12340"/>
                    <exon start="12421" stop="12654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRIPSRGHYGPLISAISLKPTFGSCSEEDKKSATVFVIVGVVTTCIFLLLISTLWWKGYLQCKKKQRTDLEGMELQTISFTLKQIKAATNNFDASNKIGEGGFGAVFKGRLSDGTLVAVKQLSRQSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGTELLLVYEYLENNSLARALFRKIFNLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12686" stop="12919"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSIKMLACWTTLDSEKSQLMLDWPTRFKICVGIAKGLAFLHEESSLKIVHRDIKATNVLLDRELNPKISDFGLAKLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13164" PGL_stop="14063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13164" e_stop="13218"/>
            <exon e_start="13365" e_stop="14063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13164" e_stop="13218" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.937">
            <gDNA_intron_boundary i_start="13219" i_stop="13364" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="13365" e_stop="14063" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13164" stop="13218"/>
              <exon start="13365" stop="14057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13188" stop="13218"/>
              <exon start="13365" stop="13970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13188" stop="13218"/>
              <exon start="13365" stop="13970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13188" stop="13218"/>
              <exon start="13365" stop="13970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13381" stop="14063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGAACAACTATGGCTATGTGCCTTCTGAGAATTTCATTTGTCTTTTAGATTGG : GCCTGTCACTTGCTGCAAAATGGAAAAATAGAGGAGCTGATTGATGATAAATTGGGTTCTCAGTTTAGCAAAGCAGAAGCAGAATTGATAATAAAAGTAGCGCTATTATGCACTTGTGCGACGCCATCACTCAGGCCTGTAATGTCTGAGGCTGTAGGCATGCTTGAAGGAAAAAGAGATGCCCCTGATAGTATCCCAGAAGCAAATATGTATACTGACGATTTGAGATTTCAAGCCTTGAAAGATTTCCAACAAGAGAGGCAAAATCAAAGTGCGTCAAGTAATCAAGCTCAGCGTTCAAGCATCCAAACTGCCTCTGATCTCTGTGAATACAACCCCGAATCAAGATCTGATGACTAACTGAATACAACCCCGAATCAAGATCTGATGACTAACTCTTTACTGTGTGTGTATTCTTATTTAATCTTTGCCAGTGTGCCTGTGTCTTATGGTTCATGAGGGATTACATTGGTTCAAAGCCACTCATCGAGGTATGATTGCTGTAACTTGTAACTATTTGTTCAATTTTTGTGAGTGAGATTTCTATAAAATGTACATAAATTAATATCCCAAGAAAAATTGTGAGGAGCTTTTTTGCACCTCCTAGCTAGATTTCAAATTTGTATAATATTCTGCCCCATTGTGATAAACCTGAAATGTAGACTATATGGTCTTTCTGTAAACAAAAAAGGATTCATT</gDNA_template>
            <first_frame> Q  E  Q  L  W  L  C  A  F  *  E  F  H  L  S  F  R  L   : G  L  S  L  A  A  K  W  K  N  R  G  A  D  *  *  *  I  G  F  S  V  *  Q  S  R  S  R  I  D  N  K  S  S  A  I  M  H  L  C  D  A  I  T  Q  A  C  N  V  *  G  C  R  H  A  *  R  K  K  R  C  P  *  *  Y  P  R  S  K  Y  V  Y  *  R  F  E  I  S  S  L  E  R  F  P  T  R  E  A  K  S  K  C  V  K  *  S  S  S  A  F  K  H  P  N  C  L  *  S  L  *  I  Q  P  R  I  K  I  *  *  L  T  E  Y  N  P  E  S  R  S  D  D  *  L  F  T  V  C  V  F  L  F  N  L  C  Q  C  A  C  V  L  W  F  M  R  D  Y  I  G  S  K  P  L  I  E  V  *  L  L  *  L  V  T  I  C  S  I  F  V  S  E  I  S  I  K  C  T  *  I  N  I  P  R  K  I  V  R  S  F  F  A  P  P  S  *  I  S  N  L  Y  N  I  L  P  H  C  D  K  P  E  M  *  T  I  W  S  F  C  K  Q  K  R  I  H  </first_frame>
            <second_frame>  K  N  N  Y  G  Y  V  P  S  E  N  F  I  C  L  L  D  W  :  A  C  H  L  L  Q  N  G  K  I  E  E  L  I  D  D  K  L  G  S  Q  F  S  K  A  E  A  E  L  I  I  K  V  A  L  L  C  T  C  A  T  P  S  L  R  P  V  M  S  E  A  V  G  M  L  E  G  K  R  D  A  P  D  S  I  P  E  A  N  M  Y  T  D  D  L  R  F  Q  A  L  K  D  F  Q  Q  E  R  Q  N  Q  S  A  S  S  N  Q  A  Q  R  S  S  I  Q  T  A  S  D  L  C  E  Y  N  P  E  S  R  S  D  D  *  L  N  T  T  P  N  Q  D  L  M  T  N  S  L  L  C  V  Y  S  Y  L  I  F  A  S  V  P  V  S  Y  G  S  *  G  I  T  L  V  Q  S  H  S  S  R  Y  D  C  C  N  L  *  L  F  V  Q  F  L  *  V  R  F  L  *  N  V  H  K  L  I  S  Q  E  K  L  *  G  A  F  L  H  L  L  A  R  F  Q  I  C  I  I  F  C  P  I  V  I  N  L  K  C  R  L  Y  G  L  S  V  N  K  K  G  F  I </second_frame>
            <third_frame>   R  T  T  M  A  M  C  L  L  R  I  S  F  V  F  *  I  G :   P  V  T  C  C  K  M  E  K  *  R  S  *  L  M  I  N  W  V  L  S  L  A  K  Q  K  Q  N  *  *  *  K  *  R  Y  Y  A  L  V  R  R  H  H  S  G  L  *  C  L  R  L  *  A  C  L  K  E  K  E  M  P  L  I  V  S  Q  K  Q  I  C  I  L  T  I  *  D  F  K  P  *  K  I  S  N  K  R  G  K  I  K  V  R  Q  V  I  K  L  S  V  Q  A  S  K  L  P  L  I  S  V  N  T  T  P  N  Q  D  L  M  T  N  *  I  Q  P  R  I  K  I  *  *  L  T  L  Y  C  V  C  I  L  I  *  S  L  P  V  C  L  C  L  M  V  H  E  G  L  H  W  F  K  A  T  H  R  G  M  I  A  V  T  C  N  Y  L  F  N  F  C  E  *  D  F  Y  K  M  Y  I  N  *  Y  P  K  K  N  C  E  E  L  F  C  T  S  *  L  D  F  K  F  V  *  Y  S  A  P  L  *  *  T  *  N  V  D  Y  M  V  F  L  *  T  K  K  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13165" stop="13218"/>
                    <exon start="13365" stop="13724"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNNYGYVPSENFICLLDWACHLLQNGKIEELIDDKLGSQFSKAEAELIIKVALLCTCATPSLRPVMSEAVGMLEGKRDAPDSIPEANMYTDDLRFQALKDFQQERQNQSASSNQAQRSSIQTASDLCEYNPESRSDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20919" PGL_stop="21315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20919" e_stop="21315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="20919" e_stop="21315" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20919" stop="21315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATGTTTGGGAGTAATGGGATTGGTGATGGGTTGACTTGTCCATATTGATTAATTATAATGATGAAAAAAAAAGGGGATAACAAAAGGCAATGTGGTTAATTGTTTATGTGTGATGTGTTGAGAAAGAGTTGAAGGCTTGTTGAATCATTGTCGATGTGACTTCATGTTTGTGTGGTTGTGAATTGTGTGATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAATTTGTCATCTGCATTATTCTGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATAAGTACTTAAGAGGATGTACCATTTCGAGGGACGTATCGCGCGCTGCGATGGATACTGTATTTCGAGGGACGTATCGCGCGCCGCGATGGTTACTATTATCGA</gDNA_template>
            <first_frame> Y  M  F  G  S  N  G  I  G  D  G  L  T  C  P  Y  *  L  I  I  M  M  K  K  K  G  D  N  K  R  Q  C  G  *  L  F  M  C  D  V  L  R  K  S  *  R  L  V  E  S  L  S  M  *  L  H  V  C  V  V  V  N  C  V  M  L  *  K  W  S  S  P  H  Y  L  C  E  F  V  I  C  I  I  L  R  H  W  L  *  Q  V  L  C  A  L  R  K  N  K  Y  L  R  G  C  T  I  S  R  D  V  S  R  A  A  M  D  T  V  F  R  G  T  Y  R  A  P  R  W  L  L  L  S  </first_frame>
            <second_frame>  I  C  L  G  V  M  G  L  V  M  G  *  L  V  H  I  D  *  L  *  *  *  K  K  K  G  I  T  K  G  N  V  V  N  C  L  C  V  M  C  *  E  R  V  E  G  L  L  N  H  C  R  C  D  F  M  F  V  W  L  *  I  V  *  C  Y  E  N  G  H  L  L  I  I  C  V  N  L  S  S  A  L  F  *  G  I  G  C  D  K  C  Y  V  H  *  E  R  I  S  T  *  E  D  V  P  F  R  G  T  Y  R  A  L  R  W  I  L  Y  F  E  G  R  I  A  R  R  D  G  Y  Y  Y  R </second_frame>
            <third_frame>   Y  V  W  E  *  W  D  W  *  W  V  D  L  S  I  L  I  N  Y  N  D  E  K  K  R  G  *  Q  K  A  M  W  L  I  V  Y  V  *  C  V  E  K  E  L  K  A  C  *  I  I  V  D  V  T  S  C  L  C  G  C  E  L  C  D  V  M  K  M  V  I  S  S  L  F  V  *  I  C  H  L  H  Y  S  E  A  L  V  V  T  S  V  M  C  I  E  K  E  *  V  L  K  R  M  Y  H  F  E  G  R  I  A  R  C  D  G  Y  C  I  S  R  D  V  S  R  A  A  M  V  T  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0100F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36362" PGL_stop="36982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36362" e_stop="36446"/>
            <exon e_start="36535" e_stop="36759"/>
            <exon e_start="36835" e_stop="36982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.583" acc_prob="0.000" e_score="0.953"/>
          <exon-intron don_prob="0.990" acc_prob="0.949" e_score="0.964"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="36362" e_stop="36446" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.583" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36447" i_stop="36534" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="36535" e_stop="36759" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.949">
            <gDNA_intron_boundary i_start="36760" i_stop="36834" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="36835" e_stop="36982" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36362" stop="36446"/>
              <exon start="36535" stop="36759"/>
              <exon start="36835" stop="36982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTGGGTGCTGTATTGAAGCAGACCAGTTACTGCTTGTATATGAATACTTAGATAACAATAGCCTTGCGAGCGTTTTGTTTG : TCGGTTGAATCTGGATTGGCCTACAAGGTTTAGGATCTGTCTCGGAATAGCTAGAGGTCTAGCTTTTCTACATGAGGAATCAAGCGTAAAAATTGTACATCGGGACATCAAAGCTACCAATGTGCTTCTGGATGGACAGCTCAATCCCAAAATCTCCGACTTTGGACTAGCTAGACTCACTGAAGAAGAGAAGACCCATATTAGTACTCGAGTTGCTGGAACAAT : AGGATACATGGCACCAGAATATGCACTCTGGGGTTATTTGACTGACAAGGCAGATGTTTACAGCTTTGGAGTTGTACTTTTGGAAACTGTCAGTGGAAAGAACAACAACAACTACATGCCAAGCCACACCAGCATTTGTCTCTTAGAT</gDNA_template>
            <first_frame> L  L  G  C  C  I  E  A  D  Q  L  L  L  V  Y  E  Y  L  D  N  N  S  L  A  S  V  L  F   : V  G  *  I  W  I  G  L  Q  G  L  G  S  V  S  E  *  L  E  V  *  L  F  Y  M  R  N  Q  A  *  K  L  Y  I  G  T  S  K  L  P  M  C  F  W  M  D  S  S  I  P  K  S  P  T  L  D  *  L  D  S  L  K  K  R  R  P  I  L  V  L  E  L  L  E  Q   : *  D  T  W  H  Q  N  M  H  S  G  V  I  *  L  T  R  Q  M  F  T  A  L  E  L  Y  F  W  K  L  S  V  E  R  T  T  T  T  T  C  Q  A  T  P  A  F  V  S  *   </first_frame>
            <second_frame>  F  L  G  A  V  L  K  Q  T  S  Y  C  L  Y  M  N  T  *  I  T  I  A  L  R  A  F  C  L  :  S  V  E  S  G  L  A  Y  K  V  *  D  L  S  R  N  S  *  R  S  S  F  S  T  *  G  I  K  R  K  N  C  T  S  G  H  Q  S  Y  Q  C  A  S  G  W  T  A  Q  S  Q  N  L  R  L  W  T  S  *  T  H  *  R  R  E  D  P  Y  *  Y  S  S  C  W  N  N  :  R  I  H  G  T  R  I  C  T  L  G  L  F  D  *  Q  G  R  C  L  Q  L  W  S  C  T  F  G  N  C  Q  W  K  E  Q  Q  Q  L  H  A  K  P  H  Q  H  L  S  L  R  </second_frame>
            <third_frame>   S  W  V  L  Y  *  S  R  P  V  T  A  C  I  *  I  L  R  *  Q  *  P  C  E  R  F  V  C :   R  L  N  L  D  W  P  T  R  F  R  I  C  L  G  I  A  R  G  L  A  F  L  H  E  E  S  S  V  K  I  V  H  R  D  I  K  A  T  N  V  L  L  D  G  Q  L  N  P  K  I  S  D  F  G  L  A  R  L  T  E  E  E  K  T  H  I  S  T  R  V  A  G  T  I :   G  Y  M  A  P  E  Y  A  L  W  G  Y  L  T  D  K  A  D  V  Y  S  F  G  V  V  L  L  E  T  V  S  G  K  N  N  N  N  Y  M  P  S  H  T  S  I  C  L  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36427" stop="36446"/>
                    <exon start="36535" stop="36759"/>
                    <exon start="36835" stop="36982"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCERFVCRLNLDWPTRFRICLGIARGLAFLHEESSVKIVHRDIKATNVLLDGQLNPKISDFGLARLTEEEKTHISTRVAGTIGYMAPEYALWGYLTDKADVYSFGVVLLETVSGKNNNNYMPSHTSICLLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41275" PGL_stop="47788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41275" e_stop="41530"/>
            <exon e_start="41610" e_stop="41787"/>
            <exon e_start="42459" e_stop="42530"/>
            <exon e_start="42618" e_stop="42686"/>
            <exon e_start="42765" e_stop="42836"/>
            <exon e_start="42918" e_stop="42989"/>
            <exon e_start="44752" e_stop="44823"/>
            <exon e_start="44924" e_stop="44992"/>
            <exon e_start="45066" e_stop="45137"/>
            <exon e_start="45244" e_stop="45315"/>
            <exon e_start="45408" e_stop="45479"/>
            <exon e_start="45766" e_stop="45834"/>
            <exon e_start="46280" e_stop="46345"/>
            <exon e_start="46712" e_stop="46777"/>
            <exon e_start="46868" e_stop="46903"/>
            <exon e_start="46989" e_stop="47029"/>
            <exon e_start="47321" e_stop="47697"/>
            <exon e_start="47763" e_stop="47788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.887"/>
          <exon-intron don_prob="0.889" acc_prob="0.708" e_score="0.961"/>
          <exon-intron don_prob="0.259" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.910" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="0.958"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.781" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.283" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.721" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.694" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.385" acc_prob="0.978" e_score="0.971"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.887">
            <gDNA_exon_boundary e_start="41275" e_stop="41530" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="41531" i_stop="41609" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="41610" e_stop="41787" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.889" acc_prob="0.708">
            <gDNA_intron_boundary i_start="41788" i_stop="42458" i_length="671"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42459" e_stop="42530" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.259" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42531" i_stop="42617" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="42618" e_stop="42686" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.910">
            <gDNA_intron_boundary i_start="42687" i_stop="42764" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="42765" e_stop="42836" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42837" i_stop="42917" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42918" e_stop="42989" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42990" i_stop="44751" i_length="1762"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44752" e_stop="44823" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.740" acc_prob="0.781">
            <gDNA_intron_boundary i_start="44824" i_stop="44923" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44924" e_stop="44992" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.846">
            <gDNA_intron_boundary i_start="44993" i_stop="45065" i_length="73"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="45066" e_stop="45137" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45138" i_stop="45243" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="45244" e_stop="45315" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.283" acc_prob="0.968">
            <gDNA_intron_boundary i_start="45316" i_stop="45407" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="45408" e_stop="45479" e_length="72"/>
          </exon>
          <intron i_serial="11" don_prob="0.721" acc_prob="0.982">
            <gDNA_intron_boundary i_start="45480" i_stop="45765" i_length="286"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45766" e_stop="45834" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45835" i_stop="46279" i_length="445"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="46280" e_stop="46345" e_length="66"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.769">
            <gDNA_intron_boundary i_start="46346" i_stop="46711" i_length="366"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="46712" e_stop="46777" e_length="66"/>
          </exon>
          <intron i_serial="14" don_prob="0.993" acc_prob="0.886">
            <gDNA_intron_boundary i_start="46778" i_stop="46867" i_length="90"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="46868" e_stop="46903" e_length="36"/>
          </exon>
          <intron i_serial="15" don_prob="0.694" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46904" i_stop="46988" i_length="85"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="46989" e_stop="47029" e_length="41"/>
          </exon>
          <intron i_serial="16" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47030" i_stop="47320" i_length="291"/>
          </intron>
          <exon e_serial="17" e_score="0.971">
            <gDNA_exon_boundary e_start="47321" e_stop="47697" e_length="377"/>
          </exon>
          <intron i_serial="17" don_prob="0.385" acc_prob="0.978">
            <gDNA_intron_boundary i_start="47698" i_stop="47762" i_length="65"/>
          </intron>
          <exon e_serial="18" e_score="0.923">
            <gDNA_exon_boundary e_start="47763" e_stop="47788" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41275" stop="41530"/>
              <exon start="41610" stop="41787"/>
              <exon start="42459" stop="42530"/>
              <exon start="42618" stop="42686"/>
              <exon start="42765" stop="42795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41275" stop="41530"/>
              <exon start="41610" stop="41787"/>
              <exon start="42459" stop="42530"/>
              <exon start="42618" stop="42686"/>
              <exon start="42765" stop="42791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41296" stop="41468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42486" stop="42530"/>
              <exon start="42618" stop="42686"/>
              <exon start="42765" stop="42836"/>
              <exon start="42918" stop="42989"/>
              <exon start="44752" stop="44823"/>
              <exon start="44924" stop="44992"/>
              <exon start="45066" stop="45137"/>
              <exon start="45244" stop="45310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42929" stop="42989"/>
              <exon start="44752" stop="44823"/>
              <exon start="44924" stop="44992"/>
              <exon start="45066" stop="45137"/>
              <exon start="45244" stop="45315"/>
              <exon start="45408" stop="45479"/>
              <exon start="45766" stop="45834"/>
              <exon start="46280" stop="46345"/>
              <exon start="46712" stop="46777"/>
              <exon start="46868" stop="46903"/>
              <exon start="46989" stop="47029"/>
              <exon start="47321" stop="47439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46868" stop="46903"/>
              <exon start="46989" stop="47029"/>
              <exon start="47321" stop="47697"/>
              <exon start="47763" stop="47788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAACTTGTCTTCTTCTCCTTAAATCTATTATCTCCATTTTTTTAAAACAATTTTTTCCTCAGAGCAGCTTCATTTTCTCAGAAAAAGACCCAAAAAAATCACTGAAATTTTCATATGAGTAGTACTCAAGCTTTTGAAGTTTAAGGGACCATGCCAAGAATCTTCAATTTCTTTCTCATCTTCTTCACCATAGTTATTTGCTTTACTGCAGACAACATTGAAGCACAAACTGGTCAACTTCCTAGAGATGAAG : TGGAAGCTCTTAGAGAAATAGCTGATCAATTGGGGAAAAAAGATTGGGATTTTAAGCTAAACCCTTGTGATGGGAACTCAAATTGGAGTACACCCAAAAGGAAAGATATGCCTTGGTATACAAATATGCTAGAATGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAATAT : ATCTCTCATAGGGCAGGATCTTGCAGGTGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAAT : TGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCAT : GGCTATTTCTAATAATCGGTTATCTGGGCATGTCCCTGAGTACATAGGAAATATGACCTCGCTTGTGAGATT : GAGTTTGGAGACTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCT : CAATCTGAAAGCTAATAATTTCACAGGAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACT : TAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCT : AGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACT : AAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACTAAATT : GGTTTTGAGAAGCTGTAATATACATGGAAATATTCATGATTCTGTAGCTGAAATGGTCAACTTACGGTTTTT : AGATCTAAGTTTCAACAATCTTGAAGGAGGAATTGCAAATCTCGAGCACGTGACTCAGATGGAGGCCAC : GTATCTGACTGGCAATGCTTTTGTTGGACAAATTCCAAATTGGCTTACTAGTCGAGATACCAGAAA : TGTGATAGACCTTTCCTACAATAAATTTGATGAAAGCTCTGAACCAGGTTCCTGTCGGGACAACCT : AAACTTATTCAGAAGCTTCAAGGTCGAGAATTTTGT : AGAGCGCGGGAAGTGCTTCTCAGCCAGTCCGTGTTCAGAGG : ACAAGTACTCATTGCACATAAATTGTGGTGGAGGAAACGTAACTGTTGGAAACACTACTTATATAGCAGATGAAGACTCCGCAGGTGCTGCAAAATTTGTTTACTGGAAAGGGAACTGGGGAACCAGCAGTACAGGGCATTTCTGGGATACCGACGTATCGTTGGATGACCACAAAGCAAAAAATGTATCTGCTATCAAGGGAGATGAATCTCAACTTTACATGACAGCTCACCTCTCCCCTTTATCTATGACTTACTTTGGACGTTGCTTAGCAAATGGAAACTACACTTTGACACTTCATTTTGCAGAAATAGTTTACAGAGACAACCAATCTTTCCGAAGTCTTGGAAAACGGATATTTGATATATACATACAG : GACAAATTGAAGTTCAAAGATTTTGA</gDNA_template>
            <first_frame> Q  Q  L  V  F  F  S  L  N  L  L  S  P  F  F  *  N  N  F  F  L  R  A  A  S  F  S  Q  K  K  T  Q  K  N  H  *  N  F  H  M  S  S  T  Q  A  F  E  V  *  G  T  M  P  R  I  F  N  F  F  L  I  F  F  T  I  V  I  C  F  T  A  D  N  I  E  A  Q  T  G  Q  L  P  R  D  E   : V  E  A  L  R  E  I  A  D  Q  L  G  K  K  D  W  D  F  K  L  N  P  C  D  G  N  S  N  W  S  T  P  K  R  K  D  M  P  W  Y  T  N  M  L  E  C  N  C  T  F  L  D  N  L  C  H  V  E  N  I :   S  L  I  G  Q  D  L  A  G  V  L  P  A  S  L  A  K  L  P  Y  L  R  K  I :   D  L  N  R  N  Y  L  N  G  T  I  P  P  E  W  A  S  T  K  L  E  I  M :   A  I  S  N  N  R  L  S  G  H  V  P  E  Y  I  G  N  M  T  S  L  V  R  L :   S  L  E  T  N  L  F  N  G  S  L  P  A  E  V  G  N  L  V  N  L  E  M  L :   N  L  K  A  N  N  F  T  G  E  W  P  V  E  L  N  N  L  T  K  L  D  E  L :   R  I  T  S  N  S  F  V  G  K  L  P  N  F  E  S  W  K  N  L  R  K  L :   E  I  E  G  S  G  F  E  G  P  L  P  P  S  F  S  V  L  S  S  L  E  E  L :   R  I  S  D  L  N  G  G  A  S  E  F  P  S  L  T  N  L  T  S  M  T  K  L :   V  L  R  S  C  N  I  H  G  N  I  H  D  S  V  A  E  M  V  N  L  R  F  L :   D  L  S  F  N  N  L  E  G  G  I  A  N  L  E  H  V  T  Q  M  E  A  T :   Y  L  T  G  N  A  F  V  G  Q  I  P  N  W  L  T  S  R  D  T  R  N :   V  I  D  L  S  Y  N  K  F  D  E  S  S  E  P  G  S  C  R  D  N  L :   N  L  F  R  S  F  K  V  E  N  F  V :   E  R  G  K  C  F  S  A  S  P  C  S  E   : D  K  Y  S  L  H  I  N  C  G  G  G  N  V  T  V  G  N  T  T  Y  I  A  D  E  D  S  A  G  A  A  K  F  V  Y  W  K  G  N  W  G  T  S  S  T  G  H  F  W  D  T  D  V  S  L  D  D  H  K  A  K  N  V  S  A  I  K  G  D  E  S  Q  L  Y  M  T  A  H  L  S  P  L  S  M  T  Y  F  G  R  C  L  A  N  G  N  Y  T  L  T  L  H  F  A  E  I  V  Y  R  D  N  Q  S  F  R  S  L  G  K  R  I  F  D  I  Y  I  Q  :  D  K  L  K  F  K  D  F   </first_frame>
            <second_frame>  S  N  L  S  S  S  P  *  I  Y  Y  L  H  F  F  K  T  I  F  S  S  E  Q  L  H  F  L  R  K  R  P  K  K  I  T  E  I  F  I  *  V  V  L  K  L  L  K  F  K  G  P  C  Q  E  S  S  I  S  F  S  S  S  S  P  *  L  F  A  L  L  Q  T  T  L  K  H  K  L  V  N  F  L  E  M  K  :  W  K  L  L  E  K  *  L  I  N  W  G  K  K  I  G  I  L  S  *  T  L  V  M  G  T  Q  I  G  V  H  P  K  G  K  I  C  L  G  I  Q  I  C  *  N  A  T  A  L  F  L  I  I  F  V  M  W  K  I   : Y  L  S  *  G  R  I  L  Q  V  S  Y  L  H  L  W  R  S  Y  H  T  *  G  K   : L  I  S  T  A  T  T  *  M  V  Q  F  P  L  N  G  R  L  P  S  W  R  S   : W  L  F  L  I  I  G  Y  L  G  M  S  L  S  T  *  E  I  *  P  R  L  *  D   : *  V  W  R  L  T  C  L  M  D  R  Y  Q  Q  K  *  G  I  W  S  I  *  R  C   : S  I  *  K  L  I  I  S  Q  E  S  G  Q  W  N  *  I  I  L  L  N  W  M  N   : L  G  *  P  V  T  A  L  L  G  N  C  L  T  L  R  V  G  K  T  S  G  S   : *  K  L  K  V  L  D  L  K  D  H  Y  P  Q  V  F  L  F  *  A  V  W  K  N   : *  E  S  V  T  S  T  E  V  L  Q  N  F  H  H  L  Q  T  *  R  V  *  L  N   : W  F  *  E  A  V  I  Y  M  E  I  F  M  I  L  *  L  K  W  S  T  Y  G  F   : *  I  *  V  S  T  I  L  K  E  E  L  Q  I  S  S  T  *  L  R  W  R  P   : R  I  *  L  A  M  L  L  L  D  K  F  Q  I  G  L  L  V  E  I  P  E   : M  *  *  T  F  P  T  I  N  L  M  K  A  L  N  Q  V  P  V  G  T  T   : *  T  Y  S  E  A  S  R  S  R  I  L   : *  S  A  G  S  A  S  Q  P  V  R  V  Q  R  :  T  S  T  H  C  T  *  I  V  V  E  E  T  *  L  L  E  T  L  L  I  *  Q  M  K  T  P  Q  V  L  Q  N  L  F  T  G  K  G  T  G  E  P  A  V  Q  G  I  S  G  I  P  T  Y  R  W  M  T  T  K  Q  K  M  Y  L  L  S  R  E  M  N  L  N  F  T  *  Q  L  T  S  P  L  Y  L  *  L  T  L  D  V  A  *  Q  M  E  T  T  L  *  H  F  I  L  Q  K  *  F  T  E  T  T  N  L  S  E  V  L  E  N  G  Y  L  I  Y  T  Y  R :   T  N  *  S  S  K  I  L  </second_frame>
            <third_frame>   A  T  C  L  L  L  L  K  S  I  I  S  I  F  L  K  Q  F  F  P  Q  S  S  F  I  F  S  E  K  D  P  K  K  S  L  K  F  S  Y  E  *  Y  S  S  F  *  S  L  R  D  H  A  K  N  L  Q  F  L  S  H  L  L  H  H  S  Y  L  L  Y  C  R  Q  H  *  S  T  N  W  S  T  S  *  R  *  S :   G  S  S  *  R  N  S  *  S  I  G  E  K  R  L  G  F  *  A  K  P  L  *  W  E  L  K  L  E  Y  T  Q  K  E  R  Y  A  L  V  Y  K  Y  A  R  M  Q  L  H  F  S  *  *  S  L  S  C  G  K  Y  :  I  S  H  R  A  G  S  C  R  C  P  T  C  I  S  G  E  V  T  I  P  E  E  N  :  *  S  Q  P  Q  L  L  K  W  Y  N  S  P  *  M  G  V  Y  Q  V  G  D  H  :  G  Y  F  *  *  S  V  I  W  A  C  P  *  V  H  R  K  Y  D  L  A  C  E  I  :  E  F  G  D  *  L  V  *  W  I  V  T  S  R  S  R  E  S  G  Q  F  R  D  A  :  Q  S  E  S  *  *  F  H  R  R  V  A  S  G  T  E  *  S  Y  *  I  G  *  T  :  *  D  N  Q  *  Q  L  C  W  E  T  A  *  L  *  E  L  E  K  P  P  E  A  :  R  N  *  R  F  W  I  *  R  T  T  T  P  K  F  F  C  F  E  Q  F  G  R  T  :  K  N  Q  *  P  Q  R  R  C  F  R  I  S  I  T  Y  K  L  D  E  Y  D  *  I  :  G  F  E  K  L  *  Y  T  W  K  Y  S  *  F  C  S  *  N  G  Q  L  T  V  F  :  R  S  K  F  Q  Q  S  *  R  R  N  C  K  S  R  A  R  D  S  D  G  G  H  :  V  S  D  W  Q  C  F  C  W  T  N  S  K  L  A  Y  *  S  R  Y  Q  K  :  C  D  R  P  F  L  Q  *  I  *  *  K  L  *  T  R  F  L  S  G  Q  P  :  K  L  I  Q  K  L  Q  G  R  E  F  C  :  R  A  R  E  V  L  L  S  Q  S  V  F  R  G :   Q  V  L  I  A  H  K  L  W  W  R  K  R  N  C  W  K  H  Y  L  Y  S  R  *  R  L  R  R  C  C  K  I  C  L  L  E  R  E  L  G  N  Q  Q  Y  R  A  F  L  G  Y  R  R  I  V  G  *  P  Q  S  K  K  C  I  C  Y  Q  G  R  *  I  S  T  L  H  D  S  S  P  L  P  F  I  Y  D  L  L  W  T  L  L  S  K  W  K  L  H  F  D  T  S  F  C  R  N  S  L  Q  R  Q  P  I  F  P  K  S  W  K  T  D  I  *  Y  I  H  T   : G  Q  I  E  V  Q  R  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41422" stop="41530"/>
                    <exon start="41610" stop="41787"/>
                    <exon start="42459" stop="42530"/>
                    <exon start="42618" stop="42686"/>
                    <exon start="42765" stop="42836"/>
                    <exon start="42918" stop="42989"/>
                    <exon start="44752" stop="44823"/>
                    <exon start="44924" stop="44992"/>
                    <exon start="45066" stop="45137"/>
                    <exon start="45244" stop="45315"/>
                    <exon start="45408" stop="45479"/>
                    <exon start="45766" stop="45834"/>
                    <exon start="46280" stop="46345"/>
                    <exon start="46712" stop="46777"/>
                    <exon start="46868" stop="46903"/>
                    <exon start="46989" stop="47029"/>
                    <exon start="47321" stop="47697"/>
                    <exon start="47763" stop="47786"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTMPRIFNFFLIFFTIVICFTADNIEAQTGQLPRDEVEALREIADQLGKKDWDFKLNPCDGNSNWSTPKRKDMPWYTNMLECNCTFLDNLCHVENISLIGQDLAGVLPASLAKLPYLRKIDLNRNYLNGTIPPEWASTKLEIMAISNNRLSGHVPEYIGNMTSLVRLSLETNLFNGSLPAEVGNLVNLEMLNLKANNFTGEWPVELNNLTKLDELRITSNSFVGKLPNFESWKNLRKLEIEGSGFEGPLPPSFSVLSSLEELRISDLNGGASEFPSLTNLTSMTKLVLRSCNIHGNIHDSVAEMVNLRFLDLSFNNLEGGIANLEHVTQMEATYLTGNAFVGQIPNWLTSRDTRNVIDLSYNKFDESSEPGSCRDNLNLFRSFKVENFVERGKCFSASPCSEDKYSLHINCGGGNVTVGNTTYIADEDSAGAAKFVYWKGNWGTSSTGHFWDTDVSLDDHKAKNVSAIKGDESQLYMTAHLSPLSMTYFGRCLANGNYTLTLHFAEIVYRDNQSFRSLGKRIFDIYIQDKLKFKDF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41275" e_stop="41530"/>
            <exon e_start="41610" e_stop="41787"/>
            <exon e_start="42459" e_stop="42530"/>
            <exon e_start="42618" e_stop="42686"/>
            <exon e_start="42765" e_stop="42836"/>
            <exon e_start="42918" e_stop="42989"/>
            <exon e_start="44778" e_stop="44823"/>
            <exon e_start="44924" e_stop="44992"/>
            <exon e_start="45066" e_stop="45137"/>
            <exon e_start="45244" e_stop="45315"/>
            <exon e_start="45408" e_stop="45479"/>
            <exon e_start="45766" e_stop="45834"/>
            <exon e_start="46280" e_stop="46345"/>
            <exon e_start="46712" e_stop="46756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.887"/>
          <exon-intron don_prob="0.889" acc_prob="0.708" e_score="0.964"/>
          <exon-intron don_prob="0.259" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.781" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.283" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.721" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.769" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.887">
            <gDNA_exon_boundary e_start="41275" e_stop="41530" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="41531" i_stop="41609" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="41610" e_stop="41787" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.889" acc_prob="0.708">
            <gDNA_intron_boundary i_start="41788" i_stop="42458" i_length="671"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42459" e_stop="42530" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.259" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42531" i_stop="42617" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42618" e_stop="42686" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.910">
            <gDNA_intron_boundary i_start="42687" i_stop="42764" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42765" e_stop="42836" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42837" i_stop="42917" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42918" e_stop="42989" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.620">
            <gDNA_intron_boundary i_start="42990" i_stop="44777" i_length="1788"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44778" e_stop="44823" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.740" acc_prob="0.781">
            <gDNA_intron_boundary i_start="44824" i_stop="44923" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44924" e_stop="44992" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.846">
            <gDNA_intron_boundary i_start="44993" i_stop="45065" i_length="73"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="45066" e_stop="45137" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45138" i_stop="45243" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="45244" e_stop="45315" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.283" acc_prob="0.968">
            <gDNA_intron_boundary i_start="45316" i_stop="45407" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="45408" e_stop="45479" e_length="72"/>
          </exon>
          <intron i_serial="11" don_prob="0.721" acc_prob="0.982">
            <gDNA_intron_boundary i_start="45480" i_stop="45765" i_length="286"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45766" e_stop="45834" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45835" i_stop="46279" i_length="445"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="46280" e_stop="46345" e_length="66"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.769">
            <gDNA_intron_boundary i_start="46346" i_stop="46711" i_length="366"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="46712" e_stop="46756" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41275" stop="41530"/>
              <exon start="41610" stop="41787"/>
              <exon start="42459" stop="42530"/>
              <exon start="42618" stop="42686"/>
              <exon start="42765" stop="42795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41275" stop="41530"/>
              <exon start="41610" stop="41787"/>
              <exon start="42459" stop="42530"/>
              <exon start="42618" stop="42686"/>
              <exon start="42765" stop="42791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41296" stop="41468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41620" stop="41787"/>
              <exon start="42459" stop="42530"/>
              <exon start="42618" stop="42686"/>
              <exon start="42765" stop="42836"/>
              <exon start="42918" stop="42989"/>
              <exon start="44778" stop="44823"/>
              <exon start="44924" stop="44992"/>
              <exon start="45066" stop="45137"/>
              <exon start="45244" stop="45315"/>
              <exon start="45408" stop="45447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41744" stop="41787"/>
              <exon start="42459" stop="42530"/>
              <exon start="42618" stop="42686"/>
              <exon start="42765" stop="42836"/>
              <exon start="42918" stop="42989"/>
              <exon start="44778" stop="44823"/>
              <exon start="44924" stop="44992"/>
              <exon start="45066" stop="45137"/>
              <exon start="45244" stop="45315"/>
              <exon start="45408" stop="45479"/>
              <exon start="45766" stop="45834"/>
              <exon start="46280" stop="46345"/>
              <exon start="46712" stop="46756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAACTTGTCTTCTTCTCCTTAAATCTATTATCTCCATTTTTTTAAAACAATTTTTTCCTCAGAGCAGCTTCATTTTCTCAGAAAAAGACCCAAAAAAATCACTGAAATTTTCATATGAGTAGTACTCAAGCTTTTGAAGTTTAAGGGACCATGCCAAGAATCTTCAATTTCTTTCTCATCTTCTTCACCATAGTTATTTGCTTTACTGCAGACAACATTGAAGCACAAACTGGTCAACTTCCTAGAGATGAAG : TGGAAGCTCTTAGAGAAATAGCTGATCAATTGGGGAAAAAAGATTGGGATTTTAAGCTAAACCCTTGTGATGGGAACTCAAATTGGAGTACACCCAAAAGGAAAGATATGCCTTGGTATACAAATATGCTAGAATGCAACTGCACTTTTCTTGATAATCTTTGTCATGTGGAAAATAT : ATCTCTCATAGGGCAGGATCTTGCAGGTGTCCTACCTGCATCTCTGGCGAAGTTACCATACCTGAGGAAAAT : TGATCTCAACCGCAACTACTTAAATGGTACAATTCCCCCTGAATGGGCGTCTACCAAGTTGGAGATCAT : GGCTATTTCTAATAATCGGTTATCTGGGCATGTCCCTGAGTACATAGGAAATATGACCTCGCTTGTGAGATT : GAGTTTGGAGACTAACTTGTTTAATGGATCGTTACCAGCAGAAGTAGGGAATCTGGTCAATTTAGAGATGCT : GAGAGTGGCCAGTGGAACTGAATAATCTTACTAAATTGGATGAACT : TAGGATAACCAGTAACAGCTTTGTTGGGAAACTGCCTAACTTTGAGAGTTGGAAAAACCTCCGGAAGCT : AGAAATTGAAGGTTCTGGATTTGAAGGACCACTACCCCCAAGTTTTTCTGTTTTGAGCAGTTTGGAAGAACT : AAGAATCAGTGACCTCAACGGAGGTGCTTCAGAATTTCCATCACTTACAAACTTGACGAGTATGACTAAATT : GGTTTTGAGAAGCTGTAATATACATGGAAATATTCATGATTCTGTAGCTGAAATGGTCAACTTACGGTTTTT : AGATCTAAGTTTCAACAATCTTGAAGGAGGAATTGCAAATCTCGAGCACGTGACTCAGATGGAGGCCAC : GTATCTGACTGGCAATGCTTTTGTTGGACAAATTCCAAATTGGCTTACTAGTCGAGATACCAGAAA : TGTGATAGACCTTTCCTACAATAAATTTGATGAAAGCTCTGAACC</gDNA_template>
            <first_frame> Q  Q  L  V  F  F  S  L  N  L  L  S  P  F  F  *  N  N  F  F  L  R  A  A  S  F  S  Q  K  K  T  Q  K  N  H  *  N  F  H  M  S  S  T  Q  A  F  E  V  *  G  T  M  P  R  I  F  N  F  F  L  I  F  F  T  I  V  I  C  F  T  A  D  N  I  E  A  Q  T  G  Q  L  P  R  D  E   : V  E  A  L  R  E  I  A  D  Q  L  G  K  K  D  W  D  F  K  L  N  P  C  D  G  N  S  N  W  S  T  P  K  R  K  D  M  P  W  Y  T  N  M  L  E  C  N  C  T  F  L  D  N  L  C  H  V  E  N  I :   S  L  I  G  Q  D  L  A  G  V  L  P  A  S  L  A  K  L  P  Y  L  R  K  I :   D  L  N  R  N  Y  L  N  G  T  I  P  P  E  W  A  S  T  K  L  E  I  M :   A  I  S  N  N  R  L  S  G  H  V  P  E  Y  I  G  N  M  T  S  L  V  R  L :   S  L  E  T  N  L  F  N  G  S  L  P  A  E  V  G  N  L  V  N  L  E  M  L :   R  V  A  S  G  T  E  *  S  Y  *  I  G  *  T  :  *  D  N  Q  *  Q  L  C  W  E  T  A  *  L  *  E  L  E  K  P  P  E  A  :  R  N  *  R  F  W  I  *  R  T  T  T  P  K  F  F  C  F  E  Q  F  G  R  T  :  K  N  Q  *  P  Q  R  R  C  F  R  I  S  I  T  Y  K  L  D  E  Y  D  *  I  :  G  F  E  K  L  *  Y  T  W  K  Y  S  *  F  C  S  *  N  G  Q  L  T  V  F  :  R  S  K  F  Q  Q  S  *  R  R  N  C  K  S  R  A  R  D  S  D  G  G  H  :  V  S  D  W  Q  C  F  C  W  T  N  S  K  L  A  Y  *  S  R  Y  Q  K  :  C  D  R  P  F  L  Q  *  I  *  *  K  L  *  T </first_frame>
            <second_frame>  S  N  L  S  S  S  P  *  I  Y  Y  L  H  F  F  K  T  I  F  S  S  E  Q  L  H  F  L  R  K  R  P  K  K  I  T  E  I  F  I  *  V  V  L  K  L  L  K  F  K  G  P  C  Q  E  S  S  I  S  F  S  S  S  S  P  *  L  F  A  L  L  Q  T  T  L  K  H  K  L  V  N  F  L  E  M  K  :  W  K  L  L  E  K  *  L  I  N  W  G  K  K  I  G  I  L  S  *  T  L  V  M  G  T  Q  I  G  V  H  P  K  G  K  I  C  L  G  I  Q  I  C  *  N  A  T  A  L  F  L  I  I  F  V  M  W  K  I   : Y  L  S  *  G  R  I  L  Q  V  S  Y  L  H  L  W  R  S  Y  H  T  *  G  K   : L  I  S  T  A  T  T  *  M  V  Q  F  P  L  N  G  R  L  P  S  W  R  S   : W  L  F  L  I  I  G  Y  L  G  M  S  L  S  T  *  E  I  *  P  R  L  *  D   : *  V  W  R  L  T  C  L  M  D  R  Y  Q  Q  K  *  G  I  W  S  I  *  R  C   : *  E  W  P  V  E  L  N  N  L  T  K  L  D  E  L :   R  I  T  S  N  S  F  V  G  K  L  P  N  F  E  S  W  K  N  L  R  K  L :   E  I  E  G  S  G  F  E  G  P  L  P  P  S  F  S  V  L  S  S  L  E  E  L :   R  I  S  D  L  N  G  G  A  S  E  F  P  S  L  T  N  L  T  S  M  T  K  L :   V  L  R  S  C  N  I  H  G  N  I  H  D  S  V  A  E  M  V  N  L  R  F  L :   D  L  S  F  N  N  L  E  G  G  I  A  N  L  E  H  V  T  Q  M  E  A  T :   Y  L  T  G  N  A  F  V  G  Q  I  P  N  W  L  T  S  R  D  T  R  N :   V  I  D  L  S  Y  N  K  F  D  E  S  S  E   </second_frame>
            <third_frame>   A  T  C  L  L  L  L  K  S  I  I  S  I  F  L  K  Q  F  F  P  Q  S  S  F  I  F  S  E  K  D  P  K  K  S  L  K  F  S  Y  E  *  Y  S  S  F  *  S  L  R  D  H  A  K  N  L  Q  F  L  S  H  L  L  H  H  S  Y  L  L  Y  C  R  Q  H  *  S  T  N  W  S  T  S  *  R  *  S :   G  S  S  *  R  N  S  *  S  I  G  E  K  R  L  G  F  *  A  K  P  L  *  W  E  L  K  L  E  Y  T  Q  K  E  R  Y  A  L  V  Y  K  Y  A  R  M  Q  L  H  F  S  *  *  S  L  S  C  G  K  Y  :  I  S  H  R  A  G  S  C  R  C  P  T  C  I  S  G  E  V  T  I  P  E  E  N  :  *  S  Q  P  Q  L  L  K  W  Y  N  S  P  *  M  G  V  Y  Q  V  G  D  H  :  G  Y  F  *  *  S  V  I  W  A  C  P  *  V  H  R  K  Y  D  L  A  C  E  I  :  E  F  G  D  *  L  V  *  W  I  V  T  S  R  S  R  E  S  G  Q  F  R  D  A  :  E  S  G  Q  W  N  *  I  I  L  L  N  W  M  N   : L  G  *  P  V  T  A  L  L  G  N  C  L  T  L  R  V  G  K  T  S  G  S   : *  K  L  K  V  L  D  L  K  D  H  Y  P  Q  V  F  L  F  *  A  V  W  K  N   : *  E  S  V  T  S  T  E  V  L  Q  N  F  H  H  L  Q  T  *  R  V  *  L  N   : W  F  *  E  A  V  I  Y  M  E  I  F  M  I  L  *  L  K  W  S  T  Y  G  F   : *  I  *  V  S  T  I  L  K  E  E  L  Q  I  S  S  T  *  L  R  W  R  P   : R  I  *  L  A  M  L  L  L  D  K  F  Q  I  G  L  L  V  E  I  P  E   : M  *  *  T  F  P  T  I  N  L  M  K  A  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41422" stop="41530"/>
                    <exon start="41610" stop="41787"/>
                    <exon start="42459" stop="42530"/>
                    <exon start="42618" stop="42686"/>
                    <exon start="42765" stop="42836"/>
                    <exon start="42918" stop="42989"/>
                    <exon start="44778" stop="44802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTMPRIFNFFLIFFTIVICFTADNIEAQTGQLPRDEVEALREIADQLGKKDWDFKLNPCDGNSNWSTPKRKDMPWYTNMLECNCTFLDNLCHVENISLIGQDLAGVLPASLAKLPYLRKIDLNRNYLNGTIPPEWASTKLEIMAISNNRLSGHVPEYIGNMTSLVRLSLETNLFNGSLPAEVGNLVNLEMLRVASGTE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44780" stop="44823"/>
                    <exon start="44924" stop="44992"/>
                    <exon start="45066" stop="45137"/>
                    <exon start="45244" stop="45315"/>
                    <exon start="45408" stop="45479"/>
                    <exon start="45766" stop="45834"/>
                    <exon start="46280" stop="46345"/>
                    <exon start="46712" stop="46754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EWPVELNNLTKLDELRITSNSFVGKLPNFESWKNLRKLEIEGSGFEGPLPPSFSVLSSLEELRISDLNGGASEFPSLTNLTSMTKLVLRSCNIHGNIHDSVAEMVNLRFLDLSFNNLEGGIANLEHVTQMEATYLTGNAFVGQIPNWLTSRDTRNVIDLSYNKFDESSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46977" e_stop="47029"/>
            <exon e_start="47321" e_stop="47617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="0.830"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.830">
            <gDNA_exon_boundary e_start="46977" e_stop="47029" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47030" i_stop="47320" i_length="291"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="47321" e_stop="47617" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46977" stop="47029"/>
              <exon start="47321" stop="47617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTACTTCAGAGAGCGCGGGAAGTGCTTCTCAGCCAGTCCGTGTTCAGAGG : ACAAGTACTCATTGCACATAAATTGTGGTGGAGGAAACGTAACTGTTGGAAACACTACTTATATAGCAGATGAAGACTCCGCAGGTGCTGCAAAATTTGTTTACTGGAAAGGGAACTGGGGAACCAGCAGTACAGGGCATTTCTGGGATACCGACGTATCGTTGGATGACCACAAAGCAAAAAATGTATCTGCTATCAAGGGAGATGAATCTCAACTTTACATGACAGCTCACCTCTCCCCTTTATCTATGACTTACTTTGGACGTTGCTTAGCAAATGGAAACTACACTTTGACAC</gDNA_template>
            <first_frame> Q  L  L  Q  R  A  R  E  V  L  L  S  Q  S  V  F  R  G :   Q  V  L  I  A  H  K  L  W  W  R  K  R  N  C  W  K  H  Y  L  Y  S  R  *  R  L  R  R  C  C  K  I  C  L  L  E  R  E  L  G  N  Q  Q  Y  R  A  F  L  G  Y  R  R  I  V  G  *  P  Q  S  K  K  C  I  C  Y  Q  G  R  *  I  S  T  L  H  D  S  S  P  L  P  F  I  Y  D  L  L  W  T  L  L  S  K  W  K  L  H  F  D   </first_frame>
            <second_frame>  N  Y  F  R  E  R  G  K  C  F  S  A  S  P  C  S  E   : D  K  Y  S  L  H  I  N  C  G  G  G  N  V  T  V  G  N  T  T  Y  I  A  D  E  D  S  A  G  A  A  K  F  V  Y  W  K  G  N  W  G  T  S  S  T  G  H  F  W  D  T  D  V  S  L  D  D  H  K  A  K  N  V  S  A  I  K  G  D  E  S  Q  L  Y  M  T  A  H  L  S  P  L  S  M  T  Y  F  G  R  C  L  A  N  G  N  Y  T  L  T  </second_frame>
            <third_frame>   T  T  S  E  S  A  G  S  A  S  Q  P  V  R  V  Q  R  :  T  S  T  H  C  T  *  I  V  V  E  E  T  *  L  L  E  T  L  L  I  *  Q  M  K  T  P  Q  V  L  Q  N  L  F  T  G  K  G  T  G  E  P  A  V  Q  G  I  S  G  I  P  T  Y  R  W  M  T  T  K  Q  K  M  Y  L  L  S  R  E  M  N  L  N  F  T  *  Q  L  T  S  P  L  Y  L  *  L  T  L  D  V  A  *  Q  M  E  T  T  L  *  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46978" stop="47029"/>
                    <exon start="47321" stop="47616"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYFRERGKCFSASPCSEDKYSLHINCGGGNVTVGNTTYIADEDSAGAAKFVYWKGNWGTSSTGHFWDTDVSLDDHKAKNVSAIKGDESQLYMTAHLSPLSMTYFGRCLANGNYTLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="48291" PGL_stop="49249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48291" e_stop="48407"/>
            <exon e_start="48772" e_stop="48890"/>
            <exon e_start="48998" e_stop="49171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.687" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48291" e_stop="48407" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.687" acc_prob="0.831">
            <gDNA_intron_boundary i_start="48408" i_stop="48771" i_length="364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48772" e_stop="48890" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="48891" i_stop="48997" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="48998" e_stop="49171" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48407"/>
              <exon start="48772" stop="48890"/>
              <exon start="48998" stop="49171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAGAAAAAGAAGATCCTAATTGTAGCTGGAGCAGTGACGTCTTCTTTAGCTCTCGTTCTGATGATTTTCTTTGTTGCTTGGAAGAAAAGAAGAAACAGGAAATTGATGGAACAAG : AATTAAGAGGACTAGATCTGCAAACTGGTATATTTACTTTCAGACAAATTAAAGCTGCCACAAGTAACTTTGATTCTGCAAATAAGCTTGGTGAAGGTGGATTTGGATCTGTCTACAAG : GGTACTCTAGCAGATGGTACTATAATTGCTGTCAAGCAGCTTTCATCCAAGTCAAGACAAGGGAACCGTGAATTTGTGAATGAAATAGGCATGATGTCAGGCTTACATCACCCAAATCTCGTCCGACTCTACGGATGTTGTGTTGAGCGGAACCAACTTTTACTAGTTTATGAG</gDNA_template>
            <first_frame> I  R  K  R  R  S  *  L  *  L  E  Q  *  R  L  L  *  L  S  F  *  *  F  S  L  L  L  G  R  K  E  E  T  G  N  *  W  N  K  :  N  *  E  D  *  I  C  K  L  V  Y  L  L  S  D  K  L  K  L  P  Q  V  T  L  I  L  Q  I  S  L  V  K  V  D  L  D  L  S  T  R :   V  L  *  Q  M  V  L  *  L  L  S  S  S  F  H  P  S  Q  D  K  G  T  V  N  L  *  M  K  *  A  *  C  Q  A  Y  I  T  Q  I  S  S  D  S  T  D  V  V  L  S  G  T  N  F  Y  *  F  M   </first_frame>
            <second_frame>  S  E  K  E  D  P  N  C  S  W  S  S  D  V  F  F  S  S  R  S  D  D  F  L  C  C  L  E  E  K  K  K  Q  E  I  D  G  T  R :   I  K  R  T  R  S  A  N  W  Y  I  Y  F  Q  T  N  *  S  C  H  K  *  L  *  F  C  K  *  A  W  *  R  W  I  W  I  C  L  Q   : G  Y  S  S  R  W  Y  Y  N  C  C  Q  A  A  F  I  Q  V  K  T  R  E  P  *  I  C  E  *  N  R  H  D  V  R  L  T  S  P  K  S  R  P  T  L  R  M  L  C  *  A  E  P  T  F  T  S  L  *  </second_frame>
            <third_frame>   Q  K  K  K  I  L  I  V  A  G  A  V  T  S  S  L  A  L  V  L  M  I  F  F  V  A  W  K  K  R  R  N  R  K  L  M  E  Q   : E  L  R  G  L  D  L  Q  T  G  I  F  T  F  R  Q  I  K  A  A  T  S  N  F  D  S  A  N  K  L  G  E  G  G  F  G  S  V  Y  K  :  G  T  L  A  D  G  T  I  I  A  V  K  Q  L  S  S  K  S  R  Q  G  N  R  E  F  V  N  E  I  G  M  M  S  G  L  H  H  P  N  L  V  R  L  Y  G  C  C  V  E  R  N  Q  L  L  L  V  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48293" stop="48407"/>
                    <exon start="48772" stop="48890"/>
                    <exon start="48998" stop="49171"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKKILIVAGAVTSSLALVLMIFFVAWKKRRNRKLMEQELRGLDLQTGIFTFRQIKAATSNFDSANKLGEGGFGSVYKGTLADGTIIAVKQLSSKSRQGNREFVNEIGMMSGLHHPNLVRLYGCCVERNQLLLVYE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48327" e_stop="48407"/>
            <exon e_start="48772" e_stop="49249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.687" acc_prob="0.831" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48327" e_stop="48407" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.687" acc_prob="0.831">
            <gDNA_intron_boundary i_start="48408" i_stop="48771" i_length="364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48772" e_stop="49249" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48327" stop="48407"/>
              <exon start="48772" stop="49249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACGTCTTCTTTAGCTCTCGTTCTGATGATTTTCTTTGTTGCTTGGAAGAAAAGAAGAAACAGGAAATTGATGGAACAAG : AATTAAGAGGACTAGATCTGCAAACTGGTATATTTACTTTCAGACAAATTAAAGCTGCCACAAGTAACTTTGATTCTGCAAATAAGCTTGGTGAAGGTGGATTTGGATCTGTCTACAAGGTGTTCATATATACAAATTCTCATAATTCTTCTTTTCCCTCTCTGTGGAAATTCTACTGGATATTTCAGACAAATTATGCTCTTCATGAATTTTTTTTGATGCTCAGGGTACTCTAGCAGATGGTACTATAATTGCTGTCAAGCAGCTTTCATCCAAGTCAAGACAAGGGAACCGTGAATTTGTGAATGAAATAGGCATGATGTCAGGCTTACATCACCCAAATCTCGTCCGACTCTACGGATGTTGTGTTGAGCGGAACCAACTTTTACTAGTTTATGAGTACATGGAGAACAATAACCTTTCCCATGTTTTGTTTGGTAATGTTATTTTTTCATACTTGATTTTGATATATTTTACT</gDNA_template>
            <first_frame> *  R  L  L  *  L  S  F  *  *  F  S  L  L  L  G  R  K  E  E  T  G  N  *  W  N  K  :  N  *  E  D  *  I  C  K  L  V  Y  L  L  S  D  K  L  K  L  P  Q  V  T  L  I  L  Q  I  S  L  V  K  V  D  L  D  L  S  T  R  C  S  Y  I  Q  I  L  I  I  L  L  F  P  L  C  G  N  S  T  G  Y  F  R  Q  I  M  L  F  M  N  F  F  *  C  S  G  Y  S  S  R  W  Y  Y  N  C  C  Q  A  A  F  I  Q  V  K  T  R  E  P  *  I  C  E  *  N  R  H  D  V  R  L  T  S  P  K  S  R  P  T  L  R  M  L  C  *  A  E  P  T  F  T  S  L  *  V  H  G  E  Q  *  P  F  P  C  F  V  W  *  C  Y  F  F  I  L  D  F  D  I  F  Y  </first_frame>
            <second_frame>  D  V  F  F  S  S  R  S  D  D  F  L  C  C  L  E  E  K  K  K  Q  E  I  D  G  T  R :   I  K  R  T  R  S  A  N  W  Y  I  Y  F  Q  T  N  *  S  C  H  K  *  L  *  F  C  K  *  A  W  *  R  W  I  W  I  C  L  Q  G  V  H  I  Y  K  F  S  *  F  F  F  S  L  S  V  E  I  L  L  D  I  S  D  K  L  C  S  S  *  I  F  F  D  A  Q  G  T  L  A  D  G  T  I  I  A  V  K  Q  L  S  S  K  S  R  Q  G  N  R  E  F  V  N  E  I  G  M  M  S  G  L  H  H  P  N  L  V  R  L  Y  G  C  C  V  E  R  N  Q  L  L  L  V  Y  E  Y  M  E  N  N  N  L  S  H  V  L  F  G  N  V  I  F  S  Y  L  I  L  I  Y  F  T </second_frame>
            <third_frame>   T  S  S  L  A  L  V  L  M  I  F  F  V  A  W  K  K  R  R  N  R  K  L  M  E  Q   : E  L  R  G  L  D  L  Q  T  G  I  F  T  F  R  Q  I  K  A  A  T  S  N  F  D  S  A  N  K  L  G  E  G  G  F  G  S  V  Y  K  V  F  I  Y  T  N  S  H  N  S  S  F  P  S  L  W  K  F  Y  W  I  F  Q  T  N  Y  A  L  H  E  F  F  L  M  L  R  V  L  *  Q  M  V  L  *  L  L  S  S  S  F  H  P  S  Q  D  K  G  T  V  N  L  *  M  K  *  A  *  C  Q  A  Y  I  T  Q  I  S  S  D  S  T  D  V  V  L  S  G  T  N  F  Y  *  F  M  S  T  W  R  T  I  T  F  P  M  F  C  L  V  M  L  F  F  H  T  *  F  *  Y  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48329" stop="48407"/>
                    <exon start="48772" stop="49007"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSLALVLMIFFVAWKKRRNRKLMEQELRGLDLQTGIFTFRQIKAATSNFDSANKLGEGGFGSVYKVFIYTNSHNSSFPSLWKFYWIFQTNYALHEFFLMLRVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48980" stop="49249"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFFDAQGTLADGTIIAVKQLSSKSRQGNREFVNEIGMMSGLHHPNLVRLYGCCVERNQLLLVYEYMENNNLSHVLFGNVIFSYLILIYFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49640" PGL_stop="50928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49640" e_stop="49757"/>
            <exon e_start="50175" e_stop="50325"/>
            <exon e_start="50482" e_stop="50928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49640" e_stop="49757" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="49758" i_stop="50174" i_length="417"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50175" e_stop="50325" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.879">
            <gDNA_intron_boundary i_start="50326" i_stop="50481" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="50482" e_stop="50928" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49640" stop="49757"/>
              <exon start="50175" stop="50325"/>
              <exon start="50482" stop="50806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50495" stop="50928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50573" stop="50928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAGGAACCAATGTACTCCTTGACAAAGACCTAAATCCAAAGATCTCAGACTTTGGTCTGGCCAAACTTCATGACGAGGAGAAAACACATGTCACCACCAGGGTTGCTGGGACTAT : AGGTTATATGGCCCCTGAATATGCACTCTGGGGTTATTTAACACATAAAGCAGATTTATACAGTTTTGGAGTGGTTGTATTGGAACTCGTTGCTGGGAAGAACAACATGAAATATCATCCTGATGAGAATTATGTTTGTCTTCTTGATTGG : GCCCTGGTTCTACAAAAAAAGGGTAAGTTTTTGGAGCTAGTAGACCCAAGGTTAGGTTCCTATTACGACAAGGAGGAGGCGTTGAGGATGATTAAAGTGGCCTTACGATGTACTAATCCATCTCCAGCACTAAGGCCAAACATGTCTGCAGTAGTAAACATGCTTGAAGGTCGTTTGAACGTTGACGAGTCTAACATCGATTCAAGTGGCTACGATGATGAATTTAATTTTCAAGGTTTAAGAGACAAATATGATGAGATGCAAGTAACTTCTAGTGAAAACCAATCAGTCCTTTTTTCAACTGGCACAAAGGGTACTGATCACTCTTCTTCTACCTTTCCTTCTACATCTACCTCTAAATAAATCTCCCTGTATGCTCAATGTTGTATTATATAAGACAAAAAAAGTATCAATAATAACAAACAAGTTGAAGAGGAGTTATAGCAC</gDNA_template>
            <first_frame> S  K  E  P  M  Y  S  L  T  K  T  *  I  Q  R  S  Q  T  L  V  W  P  N  F  M  T  R  R  K  H  M  S  P  P  G  L  L  G  L   : *  V  I  W  P  L  N  M  H  S  G  V  I  *  H  I  K  Q  I  Y  T  V  L  E  W  L  Y  W  N  S  L  L  G  R  T  T  *  N  I  I  L  M  R  I  M  F  V  F  L  I  G :   P  W  F  Y  K  K  R  V  S  F  W  S  *  *  T  Q  G  *  V  P  I  T  T  R  R  R  R  *  G  *  L  K  W  P  Y  D  V  L  I  H  L  Q  H  *  G  Q  T  C  L  Q  *  *  T  C  L  K  V  V  *  T  L  T  S  L  T  S  I  Q  V  A  T  M  M  N  L  I  F  K  V  *  E  T  N  M  M  R  C  K  *  L  L  V  K  T  N  Q  S  F  F  Q  L  A  Q  R  V  L  I  T  L  L  L  P  F  L  L  H  L  P  L  N  K  S  P  C  M  L  N  V  V  L  Y  K  T  K  K  V  S  I  I  T  N  K  L  K  R  S  Y  S   </first_frame>
            <second_frame>  Q  R  N  Q  C  T  P  *  Q  R  P  K  S  K  D  L  R  L  W  S  G  Q  T  S  *  R  G  E  N  T  C  H  H  Q  G  C  W  D  Y  :  R  L  Y  G  P  *  I  C  T  L  G  L  F  N  T  *  S  R  F  I  Q  F  W  S  G  C  I  G  T  R  C  W  E  E  Q  H  E  I  S  S  *  *  E  L  C  L  S  S  *  L   : G  P  G  S  T  K  K  G  *  V  F  G  A  S  R  P  K  V  R  F  L  L  R  Q  G  G  G  V  E  D  D  *  S  G  L  T  M  Y  *  S  I  S  S  T  K  A  K  H  V  C  S  S  K  H  A  *  R  S  F  E  R  *  R  V  *  H  R  F  K  W  L  R  *  *  I  *  F  S  R  F  K  R  Q  I  *  *  D  A  S  N  F  *  *  K  P  I  S  P  F  F  N  W  H  K  G  Y  *  S  L  F  F  Y  L  S  F  Y  I  Y  L  *  I  N  L  P  V  C  S  M  L  Y  Y  I  R  Q  K  K  Y  Q  *  *  Q  T  S  *  R  G  V  I  A  </second_frame>
            <third_frame>   K  G  T  N  V  L  L  D  K  D  L  N  P  K  I  S  D  F  G  L  A  K  L  H  D  E  E  K  T  H  V  T  T  R  V  A  G  T  I :   G  Y  M  A  P  E  Y  A  L  W  G  Y  L  T  H  K  A  D  L  Y  S  F  G  V  V  V  L  E  L  V  A  G  K  N  N  M  K  Y  H  P  D  E  N  Y  V  C  L  L  D  W  :  A  L  V  L  Q  K  K  G  K  F  L  E  L  V  D  P  R  L  G  S  Y  Y  D  K  E  E  A  L  R  M  I  K  V  A  L  R  C  T  N  P  S  P  A  L  R  P  N  M  S  A  V  V  N  M  L  E  G  R  L  N  V  D  E  S  N  I  D  S  S  G  Y  D  D  E  F  N  F  Q  G  L  R  D  K  Y  D  E  M  Q  V  T  S  S  E  N  Q  S  V  L  F  S  T  G  T  K  G  T  D  H  S  S  S  T  F  P  S  T  S  T  S  K  *  I  S  L  Y  A  Q  C  C  I  I  *  D  K  K  S  I  N  N  N  K  Q  V  E  E  E  L  *  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49642" stop="49757"/>
                    <exon start="50175" stop="50325"/>
                    <exon start="50482" stop="50844"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGTNVLLDKDLNPKISDFGLAKLHDEEKTHVTTRVAGTIGYMAPEYALWGYLTHKADLYSFGVVVLELVAGKNNMKYHPDENYVCLLDWALVLQKKGKFLELVDPRLGSYYDKEEALRMIKVALRCTNPSPALRPNMSAVVNMLEGRLNVDESNIDSSGYDDEFNFQGLRDKYDEMQVTSSENQSVLFSTGTKGTDHSSSTFPSTSTSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="50878" PGL_stop="50547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50878" e_stop="50547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="50878" e_stop="50547" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50878" stop="50547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTATATAATACAACATTGAGCATACAGGGAGATTTATTTAGAGGTAGATGTAGAAGGAAAGGTAGAAGAAGAGTGATCAGTACCCTTTGTGCCAGTTGAAAAAAGGACTGATTGGTTTTCACTAGAAGTTACTTGCATCTCATCATATTTGTCTCTTAAACCTTGAAAATTAAATTCATCATCGTAGCCACTTGAATCGATGTTAGACTCGTCAACGTTCAAACGACCTTCAAGCATGTTTACTACTGCAGACATGTTTGGCCTTAGTGCTGGAGATGGATTAGTACATCGTAAGGCCACTTTAATCATCCTCAACGCCTCCTCCTTGTCG</gDNA_template>
            <first_frame> L  I  *  Y  N  I  E  H  T  G  R  F  I  *  R  *  M  *  K  E  R  *  K  K  S  D  Q  Y  P  L  C  Q  L  K  K  G  L  I  G  F  H  *  K  L  L  A  S  H  H  I  C  L  L  N  L  E  N  *  I  H  H  R  S  H  L  N  R  C  *  T  R  Q  R  S  N  D  L  Q  A  C  L  L  L  Q  T  C  L  A  L  V  L  E  M  D  *  Y  I  V  R  P  L  *  S  S  S  T  P  P  P  C   </first_frame>
            <second_frame>  L  Y  N  T  T  L  S  I  Q  G  D  L  F  R  G  R  C  R  R  K  G  R  R  R  V  I  S  T  L  C  A  S  *  K  K  D  *  L  V  F  T  R  S  Y  L  H  L  I  I  F  V  S  *  T  L  K  I  K  F  I  I  V  A  T  *  I  D  V  R  L  V  N  V  Q  T  T  F  K  H  V  Y  Y  C  R  H  V  W  P  *  C  W  R  W  I  S  T  S  *  G  H  F  N  H  P  Q  R  L  L  L  V  </second_frame>
            <third_frame>   Y  I  I  Q  H  *  A  Y  R  E  I  Y  L  E  V  D  V  E  G  K  V  E  E  E  *  S  V  P  F  V  P  V  E  K  R  T  D  W  F  S  L  E  V  T  C  I  S  S  Y  L  S  L  K  P  *  K  L  N  S  S  S  *  P  L  E  S  M  L  D  S  S  T  F  K  R  P  S  S  M  F  T  T  A  D  M  F  G  L  S  A  G  D  G  L  V  H  R  K  A  T  L  I  I  L  N  A  S  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0100F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="59409" PGL_stop="62262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59409" e_stop="59529"/>
            <exon e_start="60278" e_stop="60379"/>
            <exon e_start="61782" e_stop="62262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.722" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59409" e_stop="59529" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.866">
            <gDNA_intron_boundary i_start="59530" i_stop="60277" i_length="748"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60278" e_stop="60379" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.722">
            <gDNA_intron_boundary i_start="60380" i_stop="61781" i_length="1402"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="61782" e_stop="62262" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59409" stop="59529"/>
              <exon start="60278" stop="60379"/>
              <exon start="61782" stop="62262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59409" stop="59529"/>
              <exon start="60278" stop="60379"/>
              <exon start="61782" stop="62257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59410" stop="59529"/>
              <exon start="60278" stop="60379"/>
              <exon start="61782" stop="62060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGAGGTGACTTAACTGGTGAAGTATGTCACCGGGCTGATAATTATCACCGGAATGTCAAATTATACGAGAATCTACTTCTCAATGTTTTTGATGTTTAGATGAGGGAAAGCTCACAGAG : GAAGTTAAAGAAATTTTGGAGCTTCTTAAGTCCACATGGCGTAATTTGGGAATCACAGAAACCATCCACTACACTTGCTATGCTTGGGTATTATTTTGACAG : GTCGGGAGTCGAAAATACACTGATATACAGCGATATACATCAGCTGTATAAATGGGCCCAAAAAGCCCCCGTTTGTATTTTGCTACTTTGGGCCTTAAGCCCCTTCGTCTTTTTATTATTATTTGTTAGACTAGGATAGGTGGAGAATTGGGCCTAAAGCCCACTAAAATATCAAATTTATGTGTTAGTTTAGGACAGGTCGGGAGCCGATTATACACTGATATATAGCGACATACATCAGCCGTATATTGCGTATTGCAGCACAAATGGGCCCAAAAGCCTCCAAAATTTCAGAAATTGTATTTTGTTACTTTGGGCGTAAGCCCCTTTGTCTTTTACTATTTTTTGTTAGACTAGGACAGTTGGAGGACTGGGCTAAAGCCCACTAAAAACTCACACTGATGTGTTAGTTTAGGACAGGTCCGGAGCCGAAAAATACACTGATATACAGCGATATACATCAGCCATATATGGGGCCCAA</gDNA_template>
            <first_frame> L  E  V  T  *  L  V  K  Y  V  T  G  L  I  I  I  T  G  M  S  N  Y  T  R  I  Y  F  S  M  F  L  M  F  R  *  G  K  A  H  R   : G  S  *  R  N  F  G  A  S  *  V  H  M  A  *  F  G  N  H  R  N  H  P  L  H  L  L  C  L  G  I  I  L  T   : G  R  E  S  K  I  H  *  Y  T  A  I  Y  I  S  C  I  N  G  P  K  K  P  P  F  V  F  C  Y  F  G  P  *  A  P  S  S  F  Y  Y  Y  L  L  D  *  D  R  W  R  I  G  P  K  A  H  *  N  I  K  F  M  C  *  F  R  T  G  R  E  P  I  I  H  *  Y  I  A  T  Y  I  S  R  I  L  R  I  A  A  Q  M  G  P  K  A  S  K  I  S  E  I  V  F  C  Y  F  G  R  K  P  L  C  L  L  L  F  F  V  R  L  G  Q  L  E  D  W  A  K  A  H  *  K  L  T  L  M  C  *  F  R  T  G  P  E  P  K  N  T  L  I  Y  S  D  I  H  Q  P  Y  M  G  P   </first_frame>
            <second_frame>  W  R  *  L  N  W  *  S  M  S  P  G  *  *  L  S  P  E  C  Q  I  I  R  E  S  T  S  Q  C  F  *  C  L  D  E  G  K  L  T  E  :  E  V  K  E  I  L  E  L  L  K  S  T  W  R  N  L  G  I  T  E  T  I  H  Y  T  C  Y  A  W  V  L  F  *  Q  :  V  G  S  R  K  Y  T  D  I  Q  R  Y  T  S  A  V  *  M  G  P  K  S  P  R  L  Y  F  A  T  L  G  L  K  P  L  R  L  F  I  I  I  C  *  T  R  I  G  G  E  L  G  L  K  P  T  K  I  S  N  L  C  V  S  L  G  Q  V  G  S  R  L  Y  T  D  I  *  R  H  T  S  A  V  Y  C  V  L  Q  H  K  W  A  Q  K  P  P  K  F  Q  K  L  Y  F  V  T  L  G  V  S  P  F  V  F  Y  Y  F  L  L  D  *  D  S  W  R  T  G  L  K  P  T  K  N  S  H  *  C  V  S  L  G  Q  V  R  S  R  K  I  H  *  Y  T  A  I  Y  I  S  H  I  W  G  P  </second_frame>
            <third_frame>   G  G  D  L  T  G  E  V  C  H  R  A  D  N  Y  H  R  N  V  K  L  Y  E  N  L  L  L  N  V  F  D  V  *  M  R  E  S  S  Q  R :   K  L  K  K  F  W  S  F  L  S  P  H  G  V  I  W  E  S  Q  K  P  S  T  T  L  A  M  L  G  Y  Y  F  D  R :   S  G  V  E  N  T  L  I  Y  S  D  I  H  Q  L  Y  K  W  A  Q  K  A  P  V  C  I  L  L  L  W  A  L  S  P  F  V  F  L  L  L  F  V  R  L  G  *  V  E  N  W  A  *  S  P  L  K  Y  Q  I  Y  V  L  V  *  D  R  S  G  A  D  Y  T  L  I  Y  S  D  I  H  Q  P  Y  I  A  Y  C  S  T  N  G  P  K  S  L  Q  N  F  R  N  C  I  L  L  L  W  A  *  A  P  L  S  F  T  I  F  C  *  T  R  T  V  G  G  L  G  *  S  P  L  K  T  H  T  D  V  L  V  *  D  R  S  G  A  E  K  Y  T  D  I  Q  R  Y  T  S  A  I  Y  G  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59510" stop="59529"/>
                    <exon start="60278" stop="60379"/>
                    <exon start="61782" stop="61920"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRESSQRKLKKFWSFLSPHGVIWESQKPSTTLAMLGYYFDRSGVENTLIYSDIHQLYKWAQKAPVCILLLWALSPFVFLLLFVRLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="79445" PGL_stop="83901"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79445" e_stop="79528"/>
            <exon e_start="81677" e_stop="81748"/>
            <exon e_start="81857" e_stop="81925"/>
            <exon e_start="82003" e_stop="82074"/>
            <exon e_start="82163" e_stop="82234"/>
            <exon e_start="82329" e_stop="82400"/>
            <exon e_start="82487" e_stop="82555"/>
            <exon e_start="82645" e_stop="82716"/>
            <exon e_start="82789" e_stop="82860"/>
            <exon e_start="82969" e_stop="83040"/>
            <exon e_start="83491" e_stop="83559"/>
            <exon e_start="83858" e_stop="83901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.659" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.717" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.986"/>
          <exon-intron don_prob="0.897" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.924" acc_prob="0.998" e_score="0.971"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79445" e_stop="79528" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79529" i_stop="81676" i_length="2148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81677" e_stop="81748" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.944">
            <gDNA_intron_boundary i_start="81749" i_stop="81856" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81857" e_stop="81925" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.659" acc_prob="0.975">
            <gDNA_intron_boundary i_start="81926" i_stop="82002" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82003" e_stop="82074" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.845" acc_prob="0.879">
            <gDNA_intron_boundary i_start="82075" i_stop="82162" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82163" e_stop="82234" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82235" i_stop="82328" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82329" e_stop="82400" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="82401" i_stop="82486" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82487" e_stop="82555" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.717" acc_prob="0.926">
            <gDNA_intron_boundary i_start="82556" i_stop="82644" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="82645" e_stop="82716" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82717" i_stop="82788" i_length="72"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="82789" e_stop="82860" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.897" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82861" i_stop="82968" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="0.986">
            <gDNA_exon_boundary e_start="82969" e_stop="83040" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83041" i_stop="83490" i_length="450"/>
          </intron>
          <exon e_serial="11" e_score="0.971">
            <gDNA_exon_boundary e_start="83491" e_stop="83559" e_length="69"/>
          </exon>
          <intron i_serial="11" don_prob="0.924" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83560" i_stop="83857" i_length="298"/>
          </intron>
          <exon e_serial="12" e_score="0.977">
            <gDNA_exon_boundary e_start="83858" e_stop="83901" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79445" stop="79528"/>
              <exon start="81677" stop="81748"/>
              <exon start="81857" stop="81925"/>
              <exon start="82003" stop="82074"/>
              <exon start="82163" stop="82234"/>
              <exon start="82329" stop="82400"/>
              <exon start="82487" stop="82553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82003" stop="82074"/>
              <exon start="82163" stop="82234"/>
              <exon start="82329" stop="82400"/>
              <exon start="82487" stop="82555"/>
              <exon start="82645" stop="82716"/>
              <exon start="82789" stop="82860"/>
              <exon start="82969" stop="83040"/>
              <exon start="83491" stop="83559"/>
              <exon start="83858" stop="83901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82011" stop="82074"/>
              <exon start="82163" stop="82234"/>
              <exon start="82329" stop="82400"/>
              <exon start="82487" stop="82555"/>
              <exon start="82645" stop="82716"/>
              <exon start="82789" stop="82793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAACAGACGCTTTGTCAGTGTACGTGAGCAATGTAACCTGCAATTGTGATACCCCTGATGGTTATTGTCATGTACAAAGCAT : ATTACTCAAAGGACAAGATCTTGCTGGTGTTCTTCCTCCATCCCTGGCGAAGTTACCAAATCTCACCATAAT : TGATCTCTCATGCAACTATTTGAGTGGTACAATTCCCCCTGAATGGACATCGATGAAACTGGAAACCAT : GTCTCTTATGCTGAATCAACTATCTGGACCAATTCCGAAGTACTTAGGAAACATGACTTCACTAGTTTATAT : GAGATTGGAAAGTAACATGTTTAATGGAACTGTTCCAAAAGAACTCGGAGGCATGGTTAATCTACAGATTCT : CATTCTTAGTTTTAATAATCTCACAGGTCAGCTACCAGAGGAGCTCAATAAACTCACTAATTTGAAAGAACT : TAGGCTGAGAGGTAACAACTTCACAGGAAAACTTCCTAACTTAGAGAGTTTTAAAACCCTTCAAAGATT : AGAGATTCAAGCTTCTGGTTTTGAAGGACCTATAGCTCCAATCATTTCTGTCTCAACTCAAATGATCGAATT : GAGAATCACTGATTTGACTGGAGGTGCTTCAGAATTTCCACAGCTTGGGAATATGACACGCCTAACTAGATT : GATATTGAGGAATTGCAATTTATCTGGGAAGATTCCTCCTTACATAACTAAGATGCCTAAATTAAAACTTCT : AGATCTAAGTTTCAACAAGTTTGAAGGACAGATCCCAAATCTTGAGAGTCTAAAGAAGTTGGACTTCTT : GTACCTGGTAGGAAATCGACTTACTGGGCCAATTCCAGGTTGGG</gDNA_template>
            <first_frame> R  N  R  R  F  V  S  V  R  E  Q  C  N  L  Q  L  *  Y  P  *  W  L  L  S  C  T  K  H  :  I  T  Q  R  T  R  S  C  W  C  S  S  S  I  P  G  E  V  T  K  S  H  H  N  :  *  S  L  M  Q  L  F  E  W  Y  N  S  P  *  M  D  I  D  E  T  G  N  H  :  V  S  Y  A  E  S  T  I  W  T  N  S  E  V  L  R  K  H  D  F  T  S  L  Y  :  E  I  G  K  *  H  V  *  W  N  C  S  K  R  T  R  R  H  G  *  S  T  D  S  :  H  S  *  F  *  *  S  H  R  S  A  T  R  G  A  Q  *  T  H  *  F  E  R  T  :  *  A  E  R  *  Q  L  H  R  K  T  S  *  L  R  E  F  *  N  P  S  K  I  :  R  D  S  S  F  W  F  *  R  T  Y  S  S  N  H  F  C  L  N  S  N  D  R  I  :  E  N  H  *  F  D  W  R  C  F  R  I  S  T  A  W  E  Y  D  T  P  N  *  I  :  D  I  E  E  L  Q  F  I  W  E  D  S  S  L  H  N  *  D  A  *  I  K  T  S  :  R  S  K  F  Q  Q  V  *  R  T  D  P  K  S  *  E  S  K  E  V  G  L  L  :  V  P  G  R  K  S  T  Y  W  A  N  S  R  L   </first_frame>
            <second_frame>  G  T  D  A  L  S  V  Y  V  S  N  V  T  C  N  C  D  T  P  D  G  Y  C  H  V  Q  S  I :   L  L  K  G  Q  D  L  A  G  V  L  P  P  S  L  A  K  L  P  N  L  T  I  I :   D  L  S  C  N  Y  L  S  G  T  I  P  P  E  W  T  S  M  K  L  E  T  M :   S  L  M  L  N  Q  L  S  G  P  I  P  K  Y  L  G  N  M  T  S  L  V  Y  M :   R  L  E  S  N  M  F  N  G  T  V  P  K  E  L  G  G  M  V  N  L  Q  I  L :   I  L  S  F  N  N  L  T  G  Q  L  P  E  E  L  N  K  L  T  N  L  K  E  L :   R  L  R  G  N  N  F  T  G  K  L  P  N  L  E  S  F  K  T  L  Q  R  L :   E  I  Q  A  S  G  F  E  G  P  I  A  P  I  I  S  V  S  T  Q  M  I  E  L :   R  I  T  D  L  T  G  G  A  S  E  F  P  Q  L  G  N  M  T  R  L  T  R  L :   I  L  R  N  C  N  L  S  G  K  I  P  P  Y  I  T  K  M  P  K  L  K  L  L :   D  L  S  F  N  K  F  E  G  Q  I  P  N  L  E  S  L  K  K  L  D  F  L :   Y  L  V  G  N  R  L  T  G  P  I  P  G  W  </second_frame>
            <third_frame>   E  Q  T  L  C  Q  C  T  *  A  M  *  P  A  I  V  I  P  L  M  V  I  V  M  Y  K  A   : Y  Y  S  K  D  K  I  L  L  V  F  F  L  H  P  W  R  S  Y  Q  I  S  P  *   : L  I  S  H  A  T  I  *  V  V  Q  F  P  L  N  G  H  R  *  N  W  K  P   : C  L  L  C  *  I  N  Y  L  D  Q  F  R  S  T  *  E  T  *  L  H  *  F  I   : *  D  W  K  V  T  C  L  M  E  L  F  Q  K  N  S  E  A  W  L  I  Y  R  F   : S  F  L  V  L  I  I  S  Q  V  S  Y  Q  R  S  S  I  N  S  L  I  *  K  N   : L  G  *  E  V  T  T  S  Q  E  N  F  L  T  *  R  V  L  K  P  F  K  D   : *  R  F  K  L  L  V  L  K  D  L  *  L  Q  S  F  L  S  Q  L  K  *  S  N   : *  E  S  L  I  *  L  E  V  L  Q  N  F  H  S  L  G  I  *  H  A  *  L  D   : *  Y  *  G  I  A  I  Y  L  G  R  F  L  L  T  *  L  R  C  L  N  *  N  F   : *  I  *  V  S  T  S  L  K  D  R  S  Q  I  L  R  V  *  R  S  W  T  S   : C  T  W  *  E  I  D  L  L  G  Q  F  Q  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79446" stop="79528"/>
                    <exon start="81677" stop="81748"/>
                    <exon start="81857" stop="81925"/>
                    <exon start="82003" stop="82074"/>
                    <exon start="82163" stop="82234"/>
                    <exon start="82329" stop="82400"/>
                    <exon start="82487" stop="82555"/>
                    <exon start="82645" stop="82716"/>
                    <exon start="82789" stop="82860"/>
                    <exon start="82969" stop="83040"/>
                    <exon start="83491" stop="83559"/>
                    <exon start="83858" stop="83900"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTDALSVYVSNVTCNCDTPDGYCHVQSILLKGQDLAGVLPPSLAKLPNLTIIDLSCNYLSGTIPPEWTSMKLETMSLMLNQLSGPIPKYLGNMTSLVYMRLESNMFNGTVPKELGGMVNLQILILSFNNLTGQLPEELNKLTNLKELRLRGNNFTGKLPNLESFKTLQRLEIQASGFEGPIAPIISVSTQMIELRITDLTGGASEFPQLGNMTRLTRLILRNCNLSGKIPPYITKMPKLKLLDLSFNKFEGQIPNLESLKKLDFLYLVGNRLTGPIPGW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="85035" PGL_stop="89791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85035" e_stop="85394"/>
            <exon e_start="85466" e_stop="85661"/>
            <exon e_start="85848" e_stop="85982"/>
            <exon e_start="86189" e_stop="86307"/>
            <exon e_start="86432" e_stop="86642"/>
            <exon e_start="86838" e_stop="87078"/>
            <exon e_start="87283" e_stop="87433"/>
            <exon e_start="87527" e_stop="88019"/>
            <exon e_start="89707" e_stop="89734"/>
            <exon e_start="89787" e_stop="89791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.625" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.383" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.798" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.941" acc_prob="0.023" e_score="0.679"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85035" e_stop="85394" e_length="360"/>
          </exon>
          <intron i_serial="1" don_prob="0.625" acc_prob="0.996">
            <gDNA_intron_boundary i_start="85395" i_stop="85465" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85466" e_stop="85661" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.383" acc_prob="0.979">
            <gDNA_intron_boundary i_start="85662" i_stop="85847" i_length="186"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85848" e_stop="85982" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.798" acc_prob="0.955">
            <gDNA_intron_boundary i_start="85983" i_stop="86188" i_length="206"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86189" e_stop="86307" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86308" i_stop="86431" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86432" e_stop="86642" e_length="211"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.981">
            <gDNA_intron_boundary i_start="86643" i_stop="86837" i_length="195"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86838" e_stop="87078" e_length="241"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="87079" i_stop="87282" i_length="204"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="87283" e_stop="87433" e_length="151"/>
          </exon>
          <intron i_serial="7" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87434" i_stop="87526" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="87527" e_stop="88019" e_length="493"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88020" i_stop="89706" i_length="1687"/>
          </intron>
          <exon e_serial="9" e_score="0.679">
            <gDNA_exon_boundary e_start="89707" e_stop="89734" e_length="28"/>
          </exon>
          <intron i_serial="9" don_prob="0.941" acc_prob="0.023">
            <gDNA_intron_boundary i_start="89735" i_stop="89786" i_length="52"/>
          </intron>
          <exon e_serial="10" e_score="0.600">
            <gDNA_exon_boundary e_start="89787" e_stop="89791" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85035" stop="85394"/>
              <exon start="85466" stop="85661"/>
              <exon start="85848" stop="85867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85158" stop="85394"/>
              <exon start="85466" stop="85661"/>
              <exon start="85848" stop="85982"/>
              <exon start="86189" stop="86227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85585" stop="85661"/>
              <exon start="85848" stop="85982"/>
              <exon start="86189" stop="86307"/>
              <exon start="86432" stop="86642"/>
              <exon start="86838" stop="87078"/>
              <exon start="87283" stop="87314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85585" stop="85661"/>
              <exon start="85848" stop="85982"/>
              <exon start="86189" stop="86307"/>
              <exon start="86432" stop="86642"/>
              <exon start="86838" stop="87058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86271" stop="86307"/>
              <exon start="86432" stop="86642"/>
              <exon start="86838" stop="87078"/>
              <exon start="87283" stop="87310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87036" stop="87078"/>
              <exon start="87283" stop="87433"/>
              <exon start="87527" stop="88019"/>
              <exon start="89707" stop="89734"/>
              <exon start="89787" stop="89791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAATTGTGGTGGAAAGAGTGTGACTATTGGGGACACTGTTTACGAAGCAGATAGAGATTCAGCAGGTGCTGCAAAATTTACTTCCTCGAAAGAGAGCTGGGGAGCCAGCAACAGTGGATACTTCTGGGATAAGATTATAACAGCAAAAGACTACCTGGCGAATAATATATCTGCCATTAAGGGAAATGACTCTGAACTGTACACGACAGCTCGGCTCTCAGCTTTATCTCTGACTTACTATGGACGTTGTTTAGCAAATGGAAACTACACCGTGACACTGCACTTTGCAGAGATTGTTATAAGAGACAATCGATCTTTCCAAAGTCTTGGAAAACGGATATTTGATGTCTATATTCAG : GGTGAGAGGAAGCTCAAAGATTTTGATATTAGAACTGATGCTGGAGGAGTTGATAAACCTTTCACGATAAAGTTCAATGCAACTGTAGCAGACAGCACTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTA : ATTTCAAGCCCCCTCCTGATTACAAAAAGTTGGTTCCCATCATAGCTGGATCAGTGGTGTCCTTATTAATTCTCATTTTGACAATATCATTTGTTGCTTGGAAGAGACACAGAAACAAGATAGCAAAGGAAGAAG : AATCAAGAGGACTAGATTCAATGACTGGTGTGTTTACCATCAGACAAATCAAAGCTGCCACAAACAATTTTGACGCTGCAAATAAAATCGGGGAAGGTGGTTTTGGATCTGTCTACAAG : GGTACACTATCAGATGGCGCAGTTATTGCTGTTAAGCAGCTTTCATCCAAATCGAAACAAGGGAAGCGTGAGTTTGTAAATGAGATAGGTATGATCTCTAGTTTACACCACCCAAATCTTGTACAACTATATGGATGTTGTGCTGAACGGAATCACCTGCTACTGGTGTATGAGTACATGGAGAACAATAGCCTGGCTCGTGCTTTATTTG : GTCCAGAAGAACATCGGCTCAAAATAGACTGGCCAACCAGGCAAAAGATCTGTATTGGGATAGCAAAAGGCTTATCTTTCCTACATGAAGAATCGTCATTGAAAATTGTCCATAGAGACATCAAAGCAACGAATGTACTTCTTGACAAGAAACTAAATCCGAAAATCTCAGACTTTGGTCTGGCCAGACTTGATGATGATGATAACAACACACACATTACCACTAGAGTTGCCGGAACCAT : AGGATATATGGCCCCTGAATATGCACTATGGGGCTACTTGACCTACAAAGCAGATGTCTACAGTTTTGGAGTTCTTGCATTAGAGATTGCTGCTGGGAAAAGCAACATGACATATCGCCCCAATGAGAAATTTGTCTGCCTCCTAGATTGG : GCTCTTGTTCTACAAAGACAAGGAAAACTGAAGGAAGTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGGATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCA : AAAAAAAATCATAATTAAACTAGGAGAG : TTCCC</gDNA_template>
            <first_frame> I  N  C  G  G  K  S  V  T  I  G  D  T  V  Y  E  A  D  R  D  S  A  G  A  A  K  F  T  S  S  K  E  S  W  G  A  S  N  S  G  Y  F  W  D  K  I  I  T  A  K  D  Y  L  A  N  N  I  S  A  I  K  G  N  D  S  E  L  Y  T  T  A  R  L  S  A  L  S  L  T  Y  Y  G  R  C  L  A  N  G  N  Y  T  V  T  L  H  F  A  E  I  V  I  R  D  N  R  S  F  Q  S  L  G  K  R  I  F  D  V  Y  I  Q  :  G  E  R  K  L  K  D  F  D  I  R  T  D  A  G  G  V  D  K  P  F  T  I  K  F  N  A  T  V  A  D  S  T  L  E  V  R  F  Q  Y  A  G  K  G  T  A  A  L  P  R  R  G  S  Y  G  P  L  V  S  A  I  S  F  E  A   : N  F  K  P  P  P  D  Y  K  K  L  V  P  I  I  A  G  S  V  V  S  L  L  I  L  I  L  T  I  S  F  V  A  W  K  R  H  R  N  K  I  A  K  E  E   : E  S  R  G  L  D  S  M  T  G  V  F  T  I  R  Q  I  K  A  A  T  N  N  F  D  A  A  N  K  I  G  E  G  G  F  G  S  V  Y  K  :  G  T  L  S  D  G  A  V  I  A  V  K  Q  L  S  S  K  S  K  Q  G  K  R  E  F  V  N  E  I  G  M  I  S  S  L  H  H  P  N  L  V  Q  L  Y  G  C  C  A  E  R  N  H  L  L  L  V  Y  E  Y  M  E  N  N  S  L  A  R  A  L  F   : G  P  E  E  H  R  L  K  I  D  W  P  T  R  Q  K  I  C  I  G  I  A  K  G  L  S  F  L  H  E  E  S  S  L  K  I  V  H  R  D  I  K  A  T  N  V  L  L  D  K  K  L  N  P  K  I  S  D  F  G  L  A  R  L  D  D  D  D  N  N  T  H  I  T  T  R  V  A  G  T  I :   G  Y  M  A  P  E  Y  A  L  W  G  Y  L  T  Y  K  A  D  V  Y  S  F  G  V  L  A  L  E  I  A  A  G  K  S  N  M  T  Y  R  P  N  E  K  F  V  C  L  L  D  W  :  A  L  V  L  Q  R  Q  G  K  L  K  E  V  V  D  A  T  L  G  S  D  L  N  E  D  E  A  L  R  M  L  N  V  A  L  L  C  T  S  P  S  P  A  L  R  P  T  M  S  A  V  V  K  I  L  E  N  H  L  D  L  P  E  F  T  M  E  S  R  F  Y  D  D  Y  D  L  F  N  F  Q  G  L  R  D  K  Y  E  D  T  N  E  S  Q  P  L  T  H  S  S  N  T  I  T  T  R  D  C  S  Y  T  T  S  T  S  A  *  M  F  A  R  Q  Y  F  L  G  G  L  S  N  I  R  Y  L  I  T  P  K  N  S  F  C  *  L  L  N  H  K  N  T  N  T  H  Y  E  S  L  N  Q  L  K  K  Y  I  F   : K  K  K  S  *  L  N  *  E  S :   S  </first_frame>
            <second_frame>  *  I  V  V  E  R  V  *  L  L  G  T  L  F  T  K  Q  I  E  I  Q  Q  V  L  Q  N  L  L  P  R  K  R  A  G  E  P  A  T  V  D  T  S  G  I  R  L  *  Q  Q  K  T  T  W  R  I  I  Y  L  P  L  R  E  M  T  L  N  C  T  R  Q  L  G  S  Q  L  Y  L  *  L  T  M  D  V  V  *  Q  M  E  T  T  P  *  H  C  T  L  Q  R  L  L  *  E  T  I  D  L  S  K  V  L  E  N  G  Y  L  M  S  I  F  R :   V  R  G  S  S  K  I  L  I  L  E  L  M  L  E  E  L  I  N  L  S  R  *  S  S  M  Q  L  *  Q  T  A  L  *  K  C  A  F  S  M  L  G  K  E  Q  L  L  S  L  E  E  E  A  M  A  L  *  F  L  P  S  L  L  K  L  :  I  S  S  P  L  L  I  T  K  S  W  F  P  S  *  L  D  Q  W  C  P  Y  *  F  S  F  *  Q  Y  H  L  L  L  G  R  D  T  E  T  R  *  Q  R  K  K  :  N  Q  E  D  *  I  Q  *  L  V  C  L  P  S  D  K  S  K  L  P  Q  T  I  L  T  L  Q  I  K  S  G  K  V  V  L  D  L  S  T  R :   V  H  Y  Q  M  A  Q  L  L  L  L  S  S  F  H  P  N  R  N  K  G  S  V  S  L  *  M  R  *  V  *  S  L  V  Y  T  T  Q  I  L  Y  N  Y  M  D  V  V  L  N  G  I  T  C  Y  W  C  M  S  T  W  R  T  I  A  W  L  V  L  Y  L  :  V  Q  K  N  I  G  S  K  *  T  G  Q  P  G  K  R  S  V  L  G  *  Q  K  A  Y  L  S  Y  M  K  N  R  H  *  K  L  S  I  E  T  S  K  Q  R  M  Y  F  L  T  R  N  *  I  R  K  S  Q  T  L  V  W  P  D  L  M  M  M  I  T  T  H  T  L  P  L  E  L  P  E  P   : *  D  I  W  P  L  N  M  H  Y  G  A  T  *  P  T  K  Q  M  S  T  V  L  E  F  L  H  *  R  L  L  L  G  K  A  T  *  H  I  A  P  M  R  N  L  S  A  S  *  I  G :   L  L  F  Y  K  D  K  E  N  *  R  K  *  *  M  Q  H  W  A  V  I  *  T  R  T  R  L  *  G  C  *  M  *  L  C  Y  V  P  V  H  L  Q  H  L  G  Q  P  C  L  L  *  S  K  F  L  K  I  I  L  T  S  L  S  L  Q  W  N  Q  D  S  M  M  I  M  I  F  S  T  F  K  G  *  E  T  S  M  K  I  Q  T  K  A  N  H  S  H  I  H  Q  I  P  L  Q  Q  E  I  A  L  T  L  P  L  H  Q  L  K  C  S  R  D  N  I  F  L  A  V  Y  Q  T  *  D  I  *  L  H  P  K  T  V  F  V  D  Y  *  I  T  K  I  Q  I  H  I  M  N  L  S  I  N  *  K  N  I  F  S  :  K  K  N  H  N  *  T  R  R   : V  P </second_frame>
            <third_frame>   K  L  W  W  K  E  C  D  Y  W  G  H  C  L  R  S  R  *  R  F  S  R  C  C  K  I  Y  F  L  E  R  E  L  G  S  Q  Q  Q  W  I  L  L  G  *  D  Y  N  S  K  R  L  P  G  E  *  Y  I  C  H  *  G  K  *  L  *  T  V  H  D  S  S  A  L  S  F  I  S  D  L  L  W  T  L  F  S  K  W  K  L  H  R  D  T  A  L  C  R  D  C  Y  K  R  Q  S  I  F  P  K  S  W  K  T  D  I  *  C  L  Y  S   : G  *  E  E  A  Q  R  F  *  Y  *  N  *  C  W  R  S  *  *  T  F  H  D  K  V  Q  C  N  C  S  R  Q  H  S  R  S  A  L  S  V  C  W  E  R  N  S  C  S  P  *  K  R  K  L  W  P  F  S  F  C  H  L  F  *  S  * :   F  Q  A  P  S  *  L  Q  K  V  G  S  H  H  S  W  I  S  G  V  L  I  N  S  H  F  D  N  I  I  C  C  L  E  E  T  Q  K  Q  D  S  K  G  R  R :   I  K  R  T  R  F  N  D  W  C  V  Y  H  Q  T  N  Q  S  C  H  K  Q  F  *  R  C  K  *  N  R  G  R  W  F  W  I  C  L  Q   : G  Y  T  I  R  W  R  S  Y  C  C  *  A  A  F  I  Q  I  E  T  R  E  A  *  V  C  K  *  D  R  Y  D  L  *  F  T  P  P  K  S  C  T  T  I  W  M  L  C  *  T  E  S  P  A  T  G  V  *  V  H  G  E  Q  *  P  G  S  C  F  I  W :   S  R  R  T  S  A  Q  N  R  L  A  N  Q  A  K  D  L  Y  W  D  S  K  R  L  I  F  P  T  *  R  I  V  I  E  N  C  P  *  R  H  Q  S  N  E  C  T  S  *  Q  E  T  K  S  E  N  L  R  L  W  S  G  Q  T  *  *  *  *  *  Q  H  T  H  Y  H  *  S  C  R  N  H  :  R  I  Y  G  P  *  I  C  T  M  G  L  L  D  L  Q  S  R  C  L  Q  F  W  S  S  C  I  R  D  C  C  W  E  K  Q  H  D  I  S  P  Q  *  E  I  C  L  P  P  R  L   : G  S  C  S  T  K  T  R  K  T  E  G  S  S  R  C  N  I  G  Q  *  F  E  R  G  R  G  S  K  D  V  K  C  S  F  A  M  Y  Q  S  I  S  S  T  *  A  N  H  V  C  C  S  Q  N  S  *  K  S  S  *  P  P  *  V  Y  N  G  I  K  I  L  *  *  L  *  S  F  Q  L  S  R  V  K  R  Q  V  *  R  Y  K  R  K  P  T  T  H  T  F  I  K  Y  H  Y  N  K  R  L  L  L  H  Y  L  Y  I  S  L  N  V  R  E  T  I  F  S  W  R  F  I  K  H  K  I  F  D  Y  T  Q  K  Q  F  L  L  I  I  E  S  Q  K  Y  K  Y  T  L  *  I  S  Q  S  I  E  K  I  Y  F  Q :   K  K  I  I  I  K  L  G  E  :  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85035" stop="85394"/>
                    <exon start="85466" stop="85661"/>
                    <exon start="85848" stop="85982"/>
                    <exon start="86189" stop="86307"/>
                    <exon start="86432" stop="86642"/>
                    <exon start="86838" stop="87078"/>
                    <exon start="87283" stop="87433"/>
                    <exon start="87527" stop="87874"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1758</number_coding_nucleotides>
                  <number_encoded_amino_acids>586</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INCGGKSVTIGDTVYEADRDSAGAAKFTSSKESWGASNSGYFWDKIITAKDYLANNISAIKGNDSELYTTARLSALSLTYYGRCLANGNYTVTLHFAEIVIRDNRSFQSLGKRIFDVYIQGERKLKDFDIRTDAGGVDKPFTIKFNATVADSTLEVRFQYAGKGTAALPRRGSYGPLVSAISFEANFKPPPDYKKLVPIIAGSVVSLLILILTISFVAWKRHRNKIAKEEESRGLDSMTGVFTIRQIKAATNNFDAANKIGEGGFGSVYKGTLSDGAVIAVKQLSSKSKQGKREFVNEIGMISSLHHPNLVQLYGCCAERNHLLLVYEYMENNSLARALFGPEEHRLKIDWPTRQKICIGIAKGLSFLHEESSLKIVHRDIKATNVLLDKKLNPKISDFGLARLDDDDNNTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVLALEIAAGKSNMTYRPNEKFVCLLDWALVLQRQGKLKEVVDATLGSDLNEDEALRMLNVALLCTSPSPALRPTMSAVVKILENHLDLPEFTMESRFYDDYDLFNFQGLRDKYEDTNESQPLTHSSNTITTRDCSYTTSTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87352" e_stop="87433"/>
            <exon e_start="87527" e_stop="88036"/>
            <exon e_start="88251" e_stop="88285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.657"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87352" e_stop="87433" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87434" i_stop="87526" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="87527" e_stop="88036" e_length="510"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88037" i_stop="88250" i_length="214"/>
          </intron>
          <exon e_serial="3" e_score="0.657">
            <gDNA_exon_boundary e_start="88251" e_stop="88285" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87352" stop="87433"/>
              <exon start="87527" stop="88036"/>
              <exon start="88251" stop="88285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371726" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="88036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283097" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87814" stop="88024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87814" stop="88024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTCTTGCATTAGAGATTGCTGCTGGGAAAAGCAACATGACATATCGCCCCAATGAGAAATTTGTCTGCCTCCTAGATTGG : GCTCTTGTTCTACAAAGACAAGGAAAACTGAAGGAAGTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGGATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAGATATCTCTTTGG : GAATAAAATAAAAATTCAAATAATTAAAATTATCG</gDNA_template>
            <first_frame> S  S  C  I  R  D  C  C  W  E  K  Q  H  D  I  S  P  Q  *  E  I  C  L  P  P  R  L   : G  S  C  S  T  K  T  R  K  T  E  G  S  S  R  C  N  I  G  Q  *  F  E  R  G  R  G  S  K  D  V  K  C  S  F  A  M  Y  Q  S  I  S  S  T  *  A  N  H  V  C  C  S  Q  N  S  *  K  S  S  *  P  P  *  V  Y  N  G  I  K  I  L  *  *  L  *  S  F  Q  L  S  R  V  K  R  Q  V  *  R  Y  K  R  K  P  T  T  H  T  F  I  K  Y  H  Y  N  K  R  L  L  L  H  Y  L  Y  I  S  L  N  V  R  E  T  I  F  S  W  R  F  I  K  H  K  I  F  D  Y  T  Q  K  Q  F  L  L  I  I  E  S  Q  K  Y  K  Y  T  L  *  I  S  Q  S  I  E  K  I  Y  F  Q  S  D  I  S  L   : G  I  K  *  K  F  K  *  L  K  L  S </first_frame>
            <second_frame>  V  L  A  L  E  I  A  A  G  K  S  N  M  T  Y  R  P  N  E  K  F  V  C  L  L  D  W  :  A  L  V  L  Q  R  Q  G  K  L  K  E  V  V  D  A  T  L  G  S  D  L  N  E  D  E  A  L  R  M  L  N  V  A  L  L  C  T  S  P  S  P  A  L  R  P  T  M  S  A  V  V  K  I  L  E  N  H  L  D  L  P  E  F  T  M  E  S  R  F  Y  D  D  Y  D  L  F  N  F  Q  G  L  R  D  K  Y  E  D  T  N  E  S  Q  P  L  T  H  S  S  N  T  I  T  T  R  D  C  S  Y  T  T  S  T  S  A  *  M  F  A  R  Q  Y  F  L  G  G  L  S  N  I  R  Y  L  I  T  P  K  N  S  F  C  *  L  L  N  H  K  N  T  N  T  H  Y  E  S  L  N  Q  L  K  K  Y  I  F  N  Q  I  S  L  W  :  E  *  N  K  N  S  N  N  *  N  Y   </second_frame>
            <third_frame>   F  L  H  *  R  L  L  L  G  K  A  T  *  H  I  A  P  M  R  N  L  S  A  S  *  I  G :   L  L  F  Y  K  D  K  E  N  *  R  K  *  *  M  Q  H  W  A  V  I  *  T  R  T  R  L  *  G  C  *  M  *  L  C  Y  V  P  V  H  L  Q  H  L  G  Q  P  C  L  L  *  S  K  F  L  K  I  I  L  T  S  L  S  L  Q  W  N  Q  D  S  M  M  I  M  I  F  S  T  F  K  G  *  E  T  S  M  K  I  Q  T  K  A  N  H  S  H  I  H  Q  I  P  L  Q  Q  E  I  A  L  T  L  P  L  H  Q  L  K  C  S  R  D  N  I  F  L  A  V  Y  Q  T  *  D  I  *  L  H  P  K  T  V  F  V  D  Y  *  I  T  K  I  Q  I  H  I  M  N  L  S  I  N  *  K  N  I  F  S  I  R  Y  L  F  G :   N  K  I  K  I  Q  I  I  K  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87353" stop="87433"/>
                    <exon start="87527" stop="87874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLALEIAAGKSNMTYRPNEKFVCLLDWALVLQRQGKLKEVVDATLGSDLNEDEALRMLNVALLCTSPSPALRPTMSAVVKILENHLDLPEFTMESRFYDDYDLFNFQGLRDKYEDTNESQPLTHSSNTITTRDCSYTTSTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="87563" e_stop="88024"/>
            <exon e_start="88181" e_stop="88202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.682"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="87563" e_stop="88024" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88025" i_stop="88180" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="0.682">
            <gDNA_exon_boundary e_start="88181" e_stop="88202" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87563" stop="88024"/>
              <exon start="88181" stop="88202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87814" stop="88024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87814" stop="88024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGTAGATGCAACATTGGGCAGTGATTTGAACGAGGACGAGGCTCTAAGGATGTTAAATGTAGCTTTGCTATGTACCAGTCCATCTCCAGCACTTAGGCCAACCATGTCTGCTGTAGTCAAAATTCTTGAAAATCATCTTGACCTCCCTGAGTTTACAATGGAATCAAGATTCTATGATGATTATGATCTTTTCAACTTTCAAGGGTTAAGAGACAAGTATGAAGATACAAACGAAAGCCAACCACTCACACATTCATCAAATACCATTACAACAAGAGATTGCTCTTACACTACCTCTACATCAGCTTAAATGTTCGCGAGACAATATTTTCTTGGCGGTTTATCAAACATAAGATATTTGATTACACCCAAAAACAGTTTTTGTTGATTATTGAATCACAAAAATACAAATACACATTATGAATCTCTCAATCAATTGAAAAAATATATTTTCAATCAG : TTTATAAAAATAAAAATTTAGA</gDNA_template>
            <first_frame> V  V  D  A  T  L  G  S  D  L  N  E  D  E  A  L  R  M  L  N  V  A  L  L  C  T  S  P  S  P  A  L  R  P  T  M  S  A  V  V  K  I  L  E  N  H  L  D  L  P  E  F  T  M  E  S  R  F  Y  D  D  Y  D  L  F  N  F  Q  G  L  R  D  K  Y  E  D  T  N  E  S  Q  P  L  T  H  S  S  N  T  I  T  T  R  D  C  S  Y  T  T  S  T  S  A  *  M  F  A  R  Q  Y  F  L  G  G  L  S  N  I  R  Y  L  I  T  P  K  N  S  F  C  *  L  L  N  H  K  N  T  N  T  H  Y  E  S  L  N  Q  L  K  K  Y  I  F  N  Q  :  F  I  K  I  K  I  *  </first_frame>
            <second_frame>  *  *  M  Q  H  W  A  V  I  *  T  R  T  R  L  *  G  C  *  M  *  L  C  Y  V  P  V  H  L  Q  H  L  G  Q  P  C  L  L  *  S  K  F  L  K  I  I  L  T  S  L  S  L  Q  W  N  Q  D  S  M  M  I  M  I  F  S  T  F  K  G  *  E  T  S  M  K  I  Q  T  K  A  N  H  S  H  I  H  Q  I  P  L  Q  Q  E  I  A  L  T  L  P  L  H  Q  L  K  C  S  R  D  N  I  F  L  A  V  Y  Q  T  *  D  I  *  L  H  P  K  T  V  F  V  D  Y  *  I  T  K  I  Q  I  H  I  M  N  L  S  I  N  *  K  N  I  F  S  I  S :   L  *  K  *  K  F  R </second_frame>
            <third_frame>   S  R  C  N  I  G  Q  *  F  E  R  G  R  G  S  K  D  V  K  C  S  F  A  M  Y  Q  S  I  S  S  T  *  A  N  H  V  C  C  S  Q  N  S  *  K  S  S  *  P  P  *  V  Y  N  G  I  K  I  L  *  *  L  *  S  F  Q  L  S  R  V  K  R  Q  V  *  R  Y  K  R  K  P  T  T  H  T  F  I  K  Y  H  Y  N  K  R  L  L  L  H  Y  L  Y  I  S  L  N  V  R  E  T  I  F  S  W  R  F  I  K  H  K  I  F  D  Y  T  Q  K  Q  F  L  L  I  I  E  S  Q  K  Y  K  Y  T  L  *  I  S  Q  S  I  E  K  I  Y  F  Q  S   : V  Y  K  N  K  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87563" stop="87874"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVDATLGSDLNEDEALRMLNVALLCTSPSPALRPTMSAVVKILENHLDLPEFTMESRFYDDYDLFNFQGLRDKYEDTNESQPLTHSSNTITTRDCSYTTSTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="85375" e_stop="85394"/>
            <exon e_start="85466" e_stop="85793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.625" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85375" e_stop="85394" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.625" acc_prob="0.996">
            <gDNA_intron_boundary i_start="85395" i_stop="85465" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85466" e_stop="85793" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85375" stop="85394"/>
              <exon start="85466" stop="85793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337951" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTGATGTCTATATTCAG : GGTGAGAGGAAGCTCAAAGATTTTGATATTAGAACTGATGCTGGAGGAGTTGATAAACCTTTCACGATAAAGTTCAATGCAACTGTAGCAGACAGCACTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAGCTGCTCTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCTGCCATCTCTTTTGAAGCTAGTAATTATACTATATCTCTTTTTACAAAGGACACCCTTGAACACACTGAACGATTAATTCTATTACTTTATTCTTAGAGAGCCAAAGGATAGACTTGAATTATTTGCTCAATTACTTAATATTGAAGACAAA</gDNA_template>
            <first_frame> Y  L  M  S  I  F  R :   V  R  G  S  S  K  I  L  I  L  E  L  M  L  E  E  L  I  N  L  S  R  *  S  S  M  Q  L  *  Q  T  A  L  *  K  C  A  F  S  M  L  G  K  E  Q  L  L  S  L  E  E  E  A  M  A  L  *  F  L  P  S  L  L  K  L  V  I  I  L  Y  L  F  L  Q  R  T  P  L  N  T  L  N  D  *  F  Y  Y  F  I  L  R  E  P  K  D  R  L  E  L  F  A  Q  L  L  N  I  E  D  K </first_frame>
            <second_frame>  I  *  C  L  Y  S   : G  *  E  E  A  Q  R  F  *  Y  *  N  *  C  W  R  S  *  *  T  F  H  D  K  V  Q  C  N  C  S  R  Q  H  S  R  S  A  L  S  V  C  W  E  R  N  S  C  S  P  *  K  R  K  L  W  P  F  S  F  C  H  L  F  *  S  *  *  L  Y  Y  I  S  F  Y  K  G  H  P  *  T  H  *  T  I  N  S  I  T  L  F  L  E  S  Q  R  I  D  L  N  Y  L  L  N  Y  L  I  L  K  T   </second_frame>
            <third_frame>   F  D  V  Y  I  Q  :  G  E  R  K  L  K  D  F  D  I  R  T  D  A  G  G  V  D  K  P  F  T  I  K  F  N  A  T  V  A  D  S  T  L  E  V  R  F  Q  Y  A  G  K  G  T  A  A  L  P  R  R  G  S  Y  G  P  L  V  S  A  I  S  F  E  A  S  N  Y  T  I  S  L  F  T  K  D  T  L  E  H  T  E  R  L  I  L  L  L  Y  S  *  R  A  K  G  *  T  *  I  I  C  S  I  T  *  Y  *  R  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85377" stop="85394"/>
                    <exon start="85466" stop="85738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDVYIQGERKLKDFDIRTDAGGVDKPFTIKFNATVADSTLEVRFQYAGKGTAALPRRGSYGPLVSAISFEASNYTISLFTKDTLEHTERLILLLYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="89980" PGL_stop="92021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89980" e_stop="90111"/>
            <exon e_start="90273" e_stop="90450"/>
            <exon e_start="91359" e_stop="91430"/>
            <exon e_start="91535" e_stop="91603"/>
            <exon e_start="91699" e_stop="91770"/>
            <exon e_start="91856" e_stop="91927"/>
            <exon e_start="92014" e_stop="92021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="0.970"/>
          <exon-intron don_prob="0.927" acc_prob="0.947" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.958" e_score="0.986"/>
          <exon-intron don_prob="0.775" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.866" e_score="0.986"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="89980" e_stop="90111" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90112" i_stop="90272" i_length="161"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="90273" e_stop="90450" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="0.947">
            <gDNA_intron_boundary i_start="90451" i_stop="91358" i_length="908"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="91359" e_stop="91430" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.958">
            <gDNA_intron_boundary i_start="91431" i_stop="91534" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91535" e_stop="91603" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.775" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91604" i_stop="91698" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91699" e_stop="91770" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.763" acc_prob="0.977">
            <gDNA_intron_boundary i_start="91771" i_stop="91855" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="91856" e_stop="91927" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.866">
            <gDNA_intron_boundary i_start="91928" i_stop="92013" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92014" e_stop="92021" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89980" stop="90111"/>
              <exon start="90273" stop="90450"/>
              <exon start="91359" stop="91430"/>
              <exon start="91535" stop="91603"/>
              <exon start="91699" stop="91770"/>
              <exon start="91856" stop="91927"/>
              <exon start="92014" stop="92021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCATTAATGAAAATGTTAGCATTATTACATAATTTCAGTATTTCTTCTTTTCTGCTTATCTTAGTCCTCTGTTCTCTAGTACAAATCATTGAAGCACAAAGTTACAGTCGTCTTCTTCCTCAACAAGAAA : AGAATGCTCTAAAAGAAATAGCGGAGCAGTTGGGTAAAAAGGACTGGGATTTTGATTTGAATCCTTGTAACGGCAATACAAATTGGACTACACCAAAAATTGACAAGATATCGATGTATGTCAACAATGTAACCTGCAATTGCGCTACCCCTGATGGCTTCTGTCATGTACAAAGCAT : ATTACTCAAAGGACAAGATCTTGCAGGTGTTCTCCCTCCCTCTCTGGTCAAGTTACCTTATCTCAAGACAAT : AGACGTCGCGCTCAACTATTTGAGTGGTACTATTCCCCCTGAATGGGCATCTATCAAACTGGAATTTAT : GTCTGTTATGGTGAATCAACTCTCTGGGCCAATTCCTAAATACTTGGGAAACATGACTACACTACGTTATAT : GAGTTTGGAGAATAACATGTTTAATGGAACTGTTCCAAAAGAACTCGGAAACATGGTTAATCTACAGAGTCT : CACTCTTA</gDNA_template>
            <first_frame> E  H  *  *  K  C  *  H  Y  Y  I  I  S  V  F  L  L  F  C  L  S  *  S  S  V  L  *  Y  K  S  L  K  H  K  V  T  V  V  F  F  L  N  K  K  :  R  M  L  *  K  K  *  R  S  S  W  V  K  R  T  G  I  L  I  *  I  L  V  T  A  I  Q  I  G  L  H  Q  K  L  T  R  Y  R  C  M  S  T  M  *  P  A  I  A  L  P  L  M  A  S  V  M  Y  K  A   : Y  Y  S  K  D  K  I  L  Q  V  F  S  L  P  L  W  S  S  Y  L  I  S  R  Q   : *  T  S  R  S  T  I  *  V  V  L  F  P  L  N  G  H  L  S  N  W  N  L   : C  L  L  W  *  I  N  S  L  G  Q  F  L  N  T  W  E  T  *  L  H  Y  V  I   : *  V  W  R  I  T  C  L  M  E  L  F  Q  K  N  S  E  T  W  L  I  Y  R  V   : S  L  L </first_frame>
            <second_frame>  S  I  N  E  N  V  S  I  I  T  *  F  Q  Y  F  F  F  S  A  Y  L  S  P  L  F  S  S  T  N  H  *  S  T  K  L  Q  S  S  S  S  S  T  R  K :   E  C  S  K  R  N  S  G  A  V  G  *  K  G  L  G  F  *  F  E  S  L  *  R  Q  Y  K  L  D  Y  T  K  N  *  Q  D  I  D  V  C  Q  Q  C  N  L  Q  L  R  Y  P  *  W  L  L  S  C  T  K  H  :  I  T  Q  R  T  R  S  C  R  C  S  P  S  L  S  G  Q  V  T  L  S  Q  D  N  :  R  R  R  A  Q  L  F  E  W  Y  Y  S  P  *  M  G  I  Y  Q  T  G  I  Y  :  V  C  Y  G  E  S  T  L  W  A  N  S  *  I  L  G  K  H  D  Y  T  T  L  Y  :  E  F  G  E  *  H  V  *  W  N  C  S  K  R  T  R  K  H  G  *  S  T  E  S  :  H  S   </second_frame>
            <third_frame>   A  L  M  K  M  L  A  L  L  H  N  F  S  I  S  S  F  L  L  I  L  V  L  C  S  L  V  Q  I  I  E  A  Q  S  Y  S  R  L  L  P  Q  Q  E   : K  N  A  L  K  E  I  A  E  Q  L  G  K  K  D  W  D  F  D  L  N  P  C  N  G  N  T  N  W  T  T  P  K  I  D  K  I  S  M  Y  V  N  N  V  T  C  N  C  A  T  P  D  G  F  C  H  V  Q  S  I :   L  L  K  G  Q  D  L  A  G  V  L  P  P  S  L  V  K  L  P  Y  L  K  T  I :   D  V  A  L  N  Y  L  S  G  T  I  P  P  E  W  A  S  I  K  L  E  F  M :   S  V  M  V  N  Q  L  S  G  P  I  P  K  Y  L  G  N  M  T  T  L  R  Y  M :   S  L  E  N  N  M  F  N  G  T  V  P  K  E  L  G  N  M  V  N  L  Q  S  L :   T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89982" stop="90111"/>
                    <exon start="90273" stop="90450"/>
                    <exon start="91359" stop="91430"/>
                    <exon start="91535" stop="91603"/>
                    <exon start="91699" stop="91770"/>
                    <exon start="91856" stop="91927"/>
                    <exon start="92014" stop="92020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALMKMLALLHNFSISSFLLILVLCSLVQIIEAQSYSRLLPQQEKNALKEIAEQLGKKDWDFDLNPCNGNTNWTTPKIDKISMYVNNVTCNCATPDGFCHVQSILLKGQDLAGVLPPSLVKLPYLKTIDVALNYLSGTIPPEWASIKLEFMSVMVNQLSGPIPKYLGNMTTLRYMSLENNMFNGTVPKELGNMVNLQSLTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="94560" PGL_stop="97552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94560" e_stop="94767"/>
            <exon e_start="94840" e_stop="95035"/>
            <exon e_start="95291" e_stop="95425"/>
            <exon e_start="95648" e_stop="95766"/>
            <exon e_start="96034" e_stop="96136"/>
            <exon e_start="96331" e_stop="96568"/>
            <exon e_start="97099" e_stop="97249"/>
            <exon e_start="97324" e_stop="97552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.931" e_score="0.966"/>
          <exon-intron don_prob="0.889" acc_prob="0.973" e_score="0.969"/>
          <exon-intron don_prob="0.892" acc_prob="0.707" e_score="0.948"/>
          <exon-intron don_prob="0.692" acc_prob="0.000" e_score="0.950"/>
          <exon-intron don_prob="0.979" acc_prob="0.688" e_score="0.932"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="0.941"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="94560" e_stop="94767" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.931">
            <gDNA_intron_boundary i_start="94768" i_stop="94839" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="94840" e_stop="95035" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.889" acc_prob="0.973">
            <gDNA_intron_boundary i_start="95036" i_stop="95290" i_length="255"/>
          </intron>
          <exon e_serial="3" e_score="0.948">
            <gDNA_exon_boundary e_start="95291" e_stop="95425" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.892" acc_prob="0.707">
            <gDNA_intron_boundary i_start="95426" i_stop="95647" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="0.950">
            <gDNA_exon_boundary e_start="95648" e_stop="95766" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.692" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95767" i_stop="96033" i_length="267"/>
          </intron>
          <exon e_serial="5" e_score="0.932">
            <gDNA_exon_boundary e_start="96034" e_stop="96136" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.688">
            <gDNA_intron_boundary i_start="96137" i_stop="96330" i_length="194"/>
          </intron>
          <exon e_serial="6" e_score="0.941">
            <gDNA_exon_boundary e_start="96331" e_stop="96568" e_length="238"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="96569" i_stop="97098" i_length="530"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="97099" e_stop="97249" e_length="151"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97250" i_stop="97323" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="0.913">
            <gDNA_exon_boundary e_start="97324" e_stop="97552" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94560" stop="94767"/>
              <exon start="94840" stop="95035"/>
              <exon start="95291" stop="95425"/>
              <exon start="95648" stop="95766"/>
              <exon start="96034" stop="96106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94560" stop="94767"/>
              <exon start="94840" stop="95035"/>
              <exon start="95291" stop="95425"/>
              <exon start="95648" stop="95766"/>
              <exon start="96034" stop="96099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96102" stop="96136"/>
              <exon start="96331" stop="96568"/>
              <exon start="97099" stop="97249"/>
              <exon start="97324" stop="97552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACAAGGCAACTAATGTATCTTCAATTAAGGGACAGAACTCTGAACTATACACGACAGCTCGACTCTCAGCTTTATCTCTAACTTACTATGGACGCTGTTTAGCAAATGGAAAATACACCGTGACACTGCACTTTGCAGAGATTGTTATAAGAGATAACCGATCTTTCCAGAGTCTCGGAAAACGGATGTTTGATGTCTATATTCAG : GGTGAGAGGAAGCTCAAAGATTTTGACATTAGAACTGCTGCTGGAGGAGTTGATGAATCTTGGACAAGAAAGTTCAATGCATCTGTAGAAGATGGCATTCTAGAAGTGCGCTTTCAGTATGCTGGGAAAGGAACAACAGCTGTCCCTAGAAGAGGAAGCTATGGCCCTTTAGTTTCAGCCATTTCTTTTGAAGCTA : ATTTCAAGCCCCCTTCAAATCACAAAAAGATGGCTCACATCATTGCTGGAGCAGTGGCGTCCTCACTAGTTCTCCTTTTGACAATATTTATTGTTGCTTGGAGGAGAAGCATAAACAGAATATCAAAGGAAGAAG : AATTAAGAGGACTAGATCTACTGACTGGTGTATTTACCATCAGACAAATCAAAGCTGCGACAAACAACTTTGATGTTGCAAATAAAATCGGGGAAGGTGGTTTTGGCTCTGTCTACAAG : CACCCAAATCTTGTCAAACTATATGGATGTTGTGCTGAAGGAAATCAACTTCTGTTGGTGTATGAATACTTGGAGAACAATAGCCTCGCCCTTGCTTTATTTG : GTTCAGACGAACACCGTCTCCAAATAGAGTGGCCAACTAGGCAAAATATCTGCATTGGGATAGCAAAAGGCTTAGCTTTCCTACACGAAGAATCGTCATTAAAAATTGTTCATAGGGATATGAAAGCAACAAATGTACTTCTTGACAAGAAACTAAACCCGAAGATCTCTGATTTTGGTCTGGCCAAACTTGATGATGAGGATAAAACACATATCAGCACTAGAATTGCTGGAACCAT : AGGATATATGGCACCTGAATATGCACTATGGGGCTACTTAACCTACAAAGCAGATGTCTACAGCTTTGGAGTTGTTGCGTTAGAGATTGTTGCTGGGAAGAACAATATGAAATATCGCCCCAATGAGAAATTTGTTTGCCTTCTAGATTGG : GCCCTTGTCCTACAAAAGCATGGAAAACTGATGGAACTAGTGGATGAAACATTAAATTCAGATTTCAAGAAGGATGAGGCTCTAAGGATGATAAACGTAGCTCTGCTATGTACCAATCCATCTCCAGCACTTAGGCCAACCATGTCTGCAGTAGTCAGCATTCTTGAAGATCATCTTGACCTTCCTGAGTTTAACTTGGAATCAAGATCCCATGATGATGAGCTCAAGT</gDNA_template>
            <first_frame> V  Q  G  N  *  C  I  F  N  *  G  T  E  L  *  T  I  H  D  S  S  T  L  S  F  I  S  N  L  L  W  T  L  F  S  K  W  K  I  H  R  D  T  A  L  C  R  D  C  Y  K  R  *  P  I  F  P  E  S  R  K  T  D  V  *  C  L  Y  S   : G  *  E  E  A  Q  R  F  *  H  *  N  C  C  W  R  S  *  *  I  L  D  K  K  V  Q  C  I  C  R  R  W  H  S  R  S  A  L  S  V  C  W  E  R  N  N  S  C  P  *  K  R  K  L  W  P  F  S  F  S  H  F  F  *  S  * :   F  Q  A  P  F  K  S  Q  K  D  G  S  H  H  C  W  S  S  G  V  L  T  S  S  P  F  D  N  I  Y  C  C  L  E  E  K  H  K  Q  N  I  K  G  R  R :   I  K  R  T  R  S  T  D  W  C  I  Y  H  Q  T  N  Q  S  C  D  K  Q  L  *  C  C  K  *  N  R  G  R  W  F  W  L  C  L  Q   : A  P  K  S  C  Q  T  I  W  M  L  C  *  R  K  S  T  S  V  G  V  *  I  L  G  E  Q  *  P  R  P  C  F  I  W :   F  R  R  T  P  S  P  N  R  V  A  N  *  A  K  Y  L  H  W  D  S  K  R  L  S  F  P  T  R  R  I  V  I  K  N  C  S  *  G  Y  E  S  N  K  C  T  S  *  Q  E  T  K  P  E  D  L  *  F  W  S  G  Q  T  *  *  *  G  *  N  T  Y  Q  H  *  N  C  W  N  H  :  R  I  Y  G  T  *  I  C  T  M  G  L  L  N  L  Q  S  R  C  L  Q  L  W  S  C  C  V  R  D  C  C  W  E  E  Q  Y  E  I  S  P  Q  *  E  I  C  L  P  S  R  L   : G  P  C  P  T  K  A  W  K  T  D  G  T  S  G  *  N  I  K  F  R  F  Q  E  G  *  G  S  K  D  D  K  R  S  S  A  M  Y  Q  S  I  S  S  T  *  A  N  H  V  C  S  S  Q  H  S  *  R  S  S  *  P  S  *  V  *  L  G  I  K  I  P  *  *  *  A  Q   </first_frame>
            <second_frame>  Y  K  A  T  N  V  S  S  I  K  G  Q  N  S  E  L  Y  T  T  A  R  L  S  A  L  S  L  T  Y  Y  G  R  C  L  A  N  G  K  Y  T  V  T  L  H  F  A  E  I  V  I  R  D  N  R  S  F  Q  S  L  G  K  R  M  F  D  V  Y  I  Q  :  G  E  R  K  L  K  D  F  D  I  R  T  A  A  G  G  V  D  E  S  W  T  R  K  F  N  A  S  V  E  D  G  I  L  E  V  R  F  Q  Y  A  G  K  G  T  T  A  V  P  R  R  G  S  Y  G  P  L  V  S  A  I  S  F  E  A   : N  F  K  P  P  S  N  H  K  K  M  A  H  I  I  A  G  A  V  A  S  S  L  V  L  L  L  T  I  F  I  V  A  W  R  R  S  I  N  R  I  S  K  E  E   : E  L  R  G  L  D  L  L  T  G  V  F  T  I  R  Q  I  K  A  A  T  N  N  F  D  V  A  N  K  I  G  E  G  G  F  G  S  V  Y  K  :  H  P  N  L  V  K  L  Y  G  C  C  A  E  G  N  Q  L  L  L  V  Y  E  Y  L  E  N  N  S  L  A  L  A  L  F   : G  S  D  E  H  R  L  Q  I  E  W  P  T  R  Q  N  I  C  I  G  I  A  K  G  L  A  F  L  H  E  E  S  S  L  K  I  V  H  R  D  M  K  A  T  N  V  L  L  D  K  K  L  N  P  K  I  S  D  F  G  L  A  K  L  D  D  E  D  K  T  H  I  S  T  R  I  A  G  T  I :   G  Y  M  A  P  E  Y  A  L  W  G  Y  L  T  Y  K  A  D  V  Y  S  F  G  V  V  A  L  E  I  V  A  G  K  N  N  M  K  Y  R  P  N  E  K  F  V  C  L  L  D  W  :  A  L  V  L  Q  K  H  G  K  L  M  E  L  V  D  E  T  L  N  S  D  F  K  K  D  E  A  L  R  M  I  N  V  A  L  L  C  T  N  P  S  P  A  L  R  P  T  M  S  A  V  V  S  I  L  E  D  H  L  D  L  P  E  F  N  L  E  S  R  S  H  D  D  E  L  K  </second_frame>
            <third_frame>   T  R  Q  L  M  Y  L  Q  L  R  D  R  T  L  N  Y  T  R  Q  L  D  S  Q  L  Y  L  *  L  T  M  D  A  V  *  Q  M  E  N  T  P  *  H  C  T  L  Q  R  L  L  *  E  I  T  D  L  S  R  V  S  E  N  G  C  L  M  S  I  F  R :   V  R  G  S  S  K  I  L  T  L  E  L  L  L  E  E  L  M  N  L  G  Q  E  S  S  M  H  L  *  K  M  A  F  *  K  C  A  F  S  M  L  G  K  E  Q  Q  L  S  L  E  E  E  A  M  A  L  *  F  Q  P  F  L  L  K  L  :  I  S  S  P  L  Q  I  T  K  R  W  L  T  S  L  L  E  Q  W  R  P  H  *  F  S  F  *  Q  Y  L  L  L  L  G  G  E  A  *  T  E  Y  Q  R  K  K  :  N  *  E  D  *  I  Y  *  L  V  Y  L  P  S  D  K  S  K  L  R  Q  T  T  L  M  L  Q  I  K  S  G  K  V  V  L  A  L  S  T  S :   T  Q  I  L  S  N  Y  M  D  V  V  L  K  E  I  N  F  C  W  C  M  N  T  W  R  T  I  A  S  P  L  L  Y  L  :  V  Q  T  N  T  V  S  K  *  S  G  Q  L  G  K  I  S  A  L  G  *  Q  K  A  *  L  S  Y  T  K  N  R  H  *  K  L  F  I  G  I  *  K  Q  Q  M  Y  F  L  T  R  N  *  T  R  R  S  L  I  L  V  W  P  N  L  M  M  R  I  K  H  I  S  A  L  E  L  L  E  P   : *  D  I  W  H  L  N  M  H  Y  G  A  T  *  P  T  K  Q  M  S  T  A  L  E  L  L  R  *  R  L  L  L  G  R  T  I  *  N  I  A  P  M  R  N  L  F  A  F  *  I  G :   P  L  S  Y  K  S  M  E  N  *  W  N  *  W  M  K  H  *  I  Q  I  S  R  R  M  R  L  *  G  *  *  T  *  L  C  Y  V  P  I  H  L  Q  H  L  G  Q  P  C  L  Q  *  S  A  F  L  K  I  I  L  T  F  L  S  L  T  W  N  Q  D  P  M  M  M  S  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94561" stop="94767"/>
                    <exon start="94840" stop="95035"/>
                    <exon start="95291" stop="95425"/>
                    <exon start="95648" stop="95766"/>
                    <exon start="96034" stop="96136"/>
                    <exon start="96331" stop="96568"/>
                    <exon start="97099" stop="97249"/>
                    <exon start="97324" stop="97551"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKATNVSSIKGQNSELYTTARLSALSLTYYGRCLANGKYTVTLHFAEIVIRDNRSFQSLGKRMFDVYIQGERKLKDFDIRTAAGGVDESWTRKFNASVEDGILEVRFQYAGKGTTAVPRRGSYGPLVSAISFEANFKPPSNHKKMAHIIAGAVASSLVLLLTIFIVAWRRSINRISKEEELRGLDLLTGVFTIRQIKAATNNFDVANKIGEGGFGSVYKHPNLVKLYGCCAEGNQLLLVYEYLENNSLALALFGSDEHRLQIEWPTRQNICIGIAKGLAFLHEESSLKIVHRDMKATNVLLDKKLNPKISDFGLAKLDDEDKTHISTRIAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVAGKNNMKYRPNEKFVCLLDWALVLQKHGKLMELVDETLNSDFKKDEALRMINVALLCTNPSPALRPTMSAVVSILEDHLDLPEFNLESRSHDDELK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="101105" PGL_stop="100282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101105" e_stop="101013"/>
            <exon e_start="100902" e_stop="100282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.580" acc_prob="0.997" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="101105" e_stop="101013" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.580" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101012" i_stop="100903" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100902" e_stop="100282" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101105" stop="101013"/>
              <exon start="100902" stop="100283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101060" stop="101013"/>
              <exon start="100902" stop="100282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAGCTTTGGGGTTGTTACGCTTGAAATTGTGAGCGGGAGAAACAGTACTAGTTGCAGGCCAAGTGATCAGACAGTTTACCTTCTTGATTCG : GCTTACGTGTTGCAAGAGCAGGGAAATTTGATGGATCTAGTTGATCCAAAACTTGGAACAGATTATTCTTGGACAGAAGCTAAAACCATTCTGGAATTAGCGATGATGTGCACTAATCCATCACCAACTCTCAGGCCAACCACGTCTGAGGTAGTGAAAGTTATTGAAGGAAAAACTAAAATCAAGACCACATCTTCAACAGTCCGGCGTTCAACAGACGAGATTGCATTGACTAAGGCCATGGCTGCACTCTCTCAGCCTTCTCCATCTGAAAGCTATTCTACCGCAGGGCCATCAGAAGCTACTCCTCCCATATCTAACAGCAACAATATTACCAATGAAATTTGAATTCAACTTCTCCCATTCATGAATATTTCCCAGATGATTACTGTACTTAGACAATGAAGTCAAGGAGGCAATGAGGCTTCAGCATGATTTTTATCTTGTTTTGAATAAGAAAACTTTTGGTCTGACATATCAGTATAAGATTTCATTCTACTACATTGTCGATGGGCATCAAGATTGTACCAGATGATTGATTTCACTGTATCCATTGCCTAATTACATTAGGTTTTGGGCCTCTCACTCTTTCTCAATGACTATATACTAACACTTACTTCA</gDNA_template>
            <first_frame> Y  S  F  G  V  V  T  L  E  I  V  S  G  R  N  S  T  S  C  R  P  S  D  Q  T  V  Y  L  L  D  S  :  A  Y  V  L  Q  E  Q  G  N  L  M  D  L  V  D  P  K  L  G  T  D  Y  S  W  T  E  A  K  T  I  L  E  L  A  M  M  C  T  N  P  S  P  T  L  R  P  T  T  S  E  V  V  K  V  I  E  G  K  T  K  I  K  T  T  S  S  T  V  R  R  S  T  D  E  I  A  L  T  K  A  M  A  A  L  S  Q  P  S  P  S  E  S  Y  S  T  A  G  P  S  E  A  T  P  P  I  S  N  S  N  N  I  T  N  E  I  *  I  Q  L  L  P  F  M  N  I  S  Q  M  I  T  V  L  R  Q  *  S  Q  G  G  N  E  A  S  A  *  F  L  S  C  F  E  *  E  N  F  W  S  D  I  S  V  *  D  F  I  L  L  H  C  R  W  A  S  R  L  Y  Q  M  I  D  F  T  V  S  I  A  *  L  H  *  V  L  G  L  S  L  F  L  N  D  Y  I  L  T  L  T  S </first_frame>
            <second_frame>  T  A  L  G  L  L  R  L  K  L  *  A  G  E  T  V  L  V  A  G  Q  V  I  R  Q  F  T  F  L  I  R :   L  T  C  C  K  S  R  E  I  *  W  I  *  L  I  Q  N  L  E  Q  I  I  L  G  Q  K  L  K  P  F  W  N  *  R  *  C  A  L  I  H  H  Q  L  S  G  Q  P  R  L  R  *  *  K  L  L  K  E  K  L  K  S  R  P  H  L  Q  Q  S  G  V  Q  Q  T  R  L  H  *  L  R  P  W  L  H  S  L  S  L  L  H  L  K  A  I  L  P  Q  G  H  Q  K  L  L  L  P  Y  L  T  A  T  I  L  P  M  K  F  E  F  N  F  S  H  S  *  I  F  P  R  *  L  L  Y  L  D  N  E  V  K  E  A  M  R  L  Q  H  D  F  Y  L  V  L  N  K  K  T  F  G  L  T  Y  Q  Y  K  I  S  F  Y  Y  I  V  D  G  H  Q  D  C  T  R  *  L  I  S  L  Y  P  L  P  N  Y  I  R  F  W  A  S  H  S  F  S  M  T  I  Y  *  H  L  L   </second_frame>
            <third_frame>   Q  L  W  G  C  Y  A  *  N  C  E  R  E  K  Q  Y  *  L  Q  A  K  *  S  D  S  L  P  S  *  F   : G  L  R  V  A  R  A  G  K  F  D  G  S  S  *  S  K  T  W  N  R  L  F  L  D  R  S  *  N  H  S  G  I  S  D  D  V  H  *  S  I  T  N  S  Q  A  N  H  V  *  G  S  E  S  Y  *  R  K  N  *  N  Q  D  H  I  F  N  S  P  A  F  N  R  R  D  C  I  D  *  G  H  G  C  T  L  S  A  F  S  I  *  K  L  F  Y  R  R  A  I  R  S  Y  S  S  H  I  *  Q  Q  Q  Y  Y  Q  *  N  L  N  S  T  S  P  I  H  E  Y  F  P  D  D  Y  C  T  *  T  M  K  S  R  R  Q  *  G  F  S  M  I  F  I  L  F  *  I  R  K  L  L  V  *  H  I  S  I  R  F  H  S  T  T  L  S  M  G  I  K  I  V  P  D  D  *  F  H  C  I  H  C  L  I  T  L  G  F  G  P  L  T  L  S  Q  *  L  Y  T  N  T  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101105" stop="101013"/>
                    <exon start="100902" stop="100555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSFGVVTLEIVSGRNSTSCRPSDQTVYLLDSAYVLQEQGNLMDLVDPKLGTDYSWTEAKTILELAMMCTNPSPTLRPTTSEVVKVIEGKTKIKTTSSTVRRSTDEIALTKAMAALSQPSPSESYSTAGPSEATPPISNSNNITNEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="102350" PGL_stop="101581"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102350" e_stop="102221"/>
            <exon e_start="102108" e_stop="101987"/>
            <exon e_start="101782" e_stop="101581"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="0.977" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.992"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="102350" e_stop="102221" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="0.977">
            <gDNA_intron_boundary i_start="102220" i_stop="102109" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="102108" e_stop="101987" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101986" i_stop="101783" i_length="204"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="101782" e_stop="101581" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102350" stop="102221"/>
              <exon start="102108" stop="101987"/>
              <exon start="101782" stop="101581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACCAAAACACCAACTGTCTCCTGCACTTAAGGCTGTGATAGCAGTATCATCACTGTCTTTTCTTGCTCTACTTCTGCTTTTACTAAGGAAATTGGGTTATCTTGGCGGAAAAAGATCATCTAAGGAAG : AACTAAAAACAACAGAATTGTTCCCGGGAGGAGTTTACACCTTTCGTCAAATAAAAGATGCTACTCAGAACTTCAATGTTGTGAACAAATTAGGTGAAGGAGGTTTTGGACCTGTTTATAAG : GGCGTTCTCCCTGATGGGACTACAATTGCAGTTAAACAGCTATCAGGAAAATCAAAGCAAGGAATACGTGAGTTTGTAAATGAAATTGGCACGATTTCAGCTCTGCAACATCCAAATCTTGTGAAGTTAATGGGATGCTGTGCAGAAGACAATGAGCTCCTACTCATTTATGAATACATGGAGAATAATTCTCTTGAACATG</gDNA_template>
            <first_frame> P  P  K  H  Q  L  S  P  A  L  K  A  V  I  A  V  S  S  L  S  F  L  A  L  L  L  L  L  L  R  K  L  G  Y  L  G  G  K  R  S  S  K  E   : E  L  K  T  T  E  L  F  P  G  G  V  Y  T  F  R  Q  I  K  D  A  T  Q  N  F  N  V  V  N  K  L  G  E  G  G  F  G  P  V  Y  K  :  G  V  L  P  D  G  T  T  I  A  V  K  Q  L  S  G  K  S  K  Q  G  I  R  E  F  V  N  E  I  G  T  I  S  A  L  Q  H  P  N  L  V  K  L  M  G  C  C  A  E  D  N  E  L  L  L  I  Y  E  Y  M  E  N  N  S  L  E  H  </first_frame>
            <second_frame>  H  Q  N  T  N  C  L  L  H  L  R  L  *  *  Q  Y  H  H  C  L  F  L  L  Y  F  C  F  Y  *  G  N  W  V  I  L  A  E  K  D  H  L  R  K  :  N  *  K  Q  Q  N  C  S  R  E  E  F  T  P  F  V  K  *  K  M  L  L  R  T  S  M  L  *  T  N  *  V  K  E  V  L  D  L  F  I  R :   A  F  S  L  M  G  L  Q  L  Q  L  N  S  Y  Q  E  N  Q  S  K  E  Y  V  S  L  *  M  K  L  A  R  F  Q  L  C  N  I  Q  I  L  *  S  *  W  D  A  V  Q  K  T  M  S  S  Y  S  F  M  N  T  W  R  I  I  L  L  N  M </second_frame>
            <third_frame>   T  K  T  P  T  V  S  C  T  *  G  C  D  S  S  I  I  T  V  F  S  C  S  T  S  A  F  T  K  E  I  G  L  S  W  R  K  K  I  I  *  G  R :   T  K  N  N  R  I  V  P  G  R  S  L  H  L  S  S  N  K  R  C  Y  S  E  L  Q  C  C  E  Q  I  R  *  R  R  F  W  T  C  L  *   : G  R  S  P  *  W  D  Y  N  C  S  *  T  A  I  R  K  I  K  A  R  N  T  *  V  C  K  *  N  W  H  D  F  S  S  A  T  S  K  S  C  E  V  N  G  M  L  C  R  R  Q  *  A  P  T  H  L  *  I  H  G  E  *  F  S  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102350" stop="102221"/>
                    <exon start="102108" stop="101987"/>
                    <exon start="101782" stop="101582"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPKHQLSPALKAVIAVSSLSFLALLLLLLRKLGYLGGKRSSKEELKTTELFPGGVYTFRQIKDATQNFNVVNKLGEGGFGPVYKGVLPDGTTIAVKQLSGKSKQGIREFVNEIGTISALQHPNLVKLMGCCAEDNELLLIYEYMENNSLEH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="106536" PGL_stop="105207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106536" e_stop="106184"/>
            <exon e_start="106083" e_stop="106012"/>
            <exon e_start="105932" e_stop="105861"/>
            <exon e_start="105761" e_stop="105684"/>
            <exon e_start="105590" e_stop="105519"/>
            <exon e_start="105245" e_stop="105207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106536" e_stop="106184" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.992">
            <gDNA_intron_boundary i_start="106183" i_stop="106084" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106083" e_stop="106012" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106011" i_stop="105933" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105932" e_stop="105861" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.691">
            <gDNA_intron_boundary i_start="105860" i_stop="105762" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105761" e_stop="105684" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.797" acc_prob="0.987">
            <gDNA_intron_boundary i_start="105683" i_stop="105591" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105590" e_stop="105519" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105518" i_stop="105246" i_length="273"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105245" e_stop="105207" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106536" stop="106184"/>
              <exon start="106083" stop="106012"/>
              <exon start="105932" stop="105861"/>
              <exon start="105761" stop="105684"/>
              <exon start="105590" stop="105519"/>
              <exon start="105245" stop="105207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106536" stop="106184"/>
              <exon start="106083" stop="106012"/>
              <exon start="105932" stop="105861"/>
              <exon start="105761" stop="105748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCATTTTCGTTTACAGAGAATGCTGTCAGTCAATATTGACTTGTGTCAACACATCTAGTTCTAGGACAAATCTCTGATATTTGTTAAATAAGGATTAAACTAACAAAATCTGAAATACAGTCCATAACAGCAGTTTTGAGCTGATTACACAACTTGTTCATGGAGTTATCGGTTGAACATGACTATCATATGGCAGAAATACTTATGATCTGAACTGTATGTAAGAAGAAAAGAAACGAAAACTGCAATATTGCATATCGAATTGTCAAATGATTTCAGGGACCTACGCGCCAATTATTTTGTTGGTGAATTGCCTCCAAGCTTCATGAAGTTGGTGAACTTAGAATACTT : TGGGGCTCAAGGGAATAACTTATCTGGTAAGTTTCCAACATTTATAGCCAACTGGACGCAACTCGAGACGTT : GGATCTGTTAGGAAATAATTTTGAAGGCTCCTGGCCAAAGGAAATCTCATCATTGAGAAGTCTCGGTTACCT : ATCACTCAGTAATGTAGTCACAAGAGGAGGTGCATATGATTTTCCCGATCTATCGCGTATGACTTCGTTGGAATACTT : GATATTGAGGAAATGTTCACTTCGTGGTCCCATTCCGGGATATATTTGGGAGCTTAAAGAACTACAGTACCT : GGACTTGAGCTTCAACGAGTTATCTGGACAACTGCCAAA</gDNA_template>
            <first_frame> M  H  F  R  L  Q  R  M  L  S  V  N  I  D  L  C  Q  H  I  *  F  *  D  K  S  L  I  F  V  K  *  G  L  N  *  Q  N  L  K  Y  S  P  *  Q  Q  F  *  A  D  Y  T  T  C  S  W  S  Y  R  L  N  M  T  I  I  W  Q  K  Y  L  *  S  E  L  Y  V  R  R  K  E  T  K  T  A  I  L  H  I  E  L  S  N  D  F  R  D  L  R  A  N  Y  F  V  G  E  L  P  P  S  F  M  K  L  V  N  L  E  Y  F :   G  A  Q  G  N  N  L  S  G  K  F  P  T  F  I  A  N  W  T  Q  L  E  T  L :   D  L  L  G  N  N  F  E  G  S  W  P  K  E  I  S  S  L  R  S  L  G  Y  L :   S  L  S  N  V  V  T  R  G  G  A  Y  D  F  P  D  L  S  R  M  T  S  L  E  Y  L :   I  L  R  K  C  S  L  R  G  P  I  P  G  Y  I  W  E  L  K  E  L  Q  Y  L :   D  L  S  F  N  E  L  S  G  Q  L  P   </first_frame>
            <second_frame>  C  I  F  V  Y  R  E  C  C  Q  S  I  L  T  C  V  N  T  S  S  S  R  T  N  L  *  Y  L  L  N  K  D  *  T  N  K  I  *  N  T  V  H  N  S  S  F  E  L  I  T  Q  L  V  H  G  V  I  G  *  T  *  L  S  Y  G  R  N  T  Y  D  L  N  C  M  *  E  E  K  K  R  K  L  Q  Y  C  I  S  N  C  Q  M  I  S  G  T  Y  A  P  I  I  L  L  V  N  C  L  Q  A  S  *  S  W  *  T  *  N  T   : L  G  L  K  G  I  T  Y  L  V  S  F  Q  H  L  *  P  T  G  R  N  S  R  R   : W  I  C  *  E  I  I  L  K  A  P  G  Q  R  K  S  H  H  *  E  V  S  V  T   : Y  H  S  V  M  *  S  Q  E  E  V  H  M  I  F  P  I  Y  R  V  *  L  R  W  N  T   : *  Y  *  G  N  V  H  F  V  V  P  F  R  D  I  F  G  S  L  K  N  Y  S  T   : W  T  *  A  S  T  S  Y  L  D  N  C  Q  </second_frame>
            <third_frame>   A  F  S  F  T  E  N  A  V  S  Q  Y  *  L  V  S  T  H  L  V  L  G  Q  I  S  D  I  C  *  I  R  I  K  L  T  K  S  E  I  Q  S  I  T  A  V  L  S  *  L  H  N  L  F  M  E  L  S  V  E  H  D  Y  H  M  A  E  I  L  M  I  *  T  V  C  K  K  K  R  N  E  N  C  N  I  A  Y  R  I  V  K  *  F  Q  G  P  T  R  Q  L  F  C  W  *  I  A  S  K  L  H  E  V  G  E  L  R  I  L  :  W  G  S  R  E  *  L  I  W  *  V  S  N  I  Y  S  Q  L  D  A  T  R  D  V  :  G  S  V  R  K  *  F  *  R  L  L  A  K  G  N  L  I  I  E  K  S  R  L  P  :  I  T  Q  *  C  S  H  K  R  R  C  I  *  F  S  R  S  I  A  Y  D  F  V  G  I  L  :  D  I  E  E  M  F  T  S  W  S  H  S  G  I  Y  L  G  A  *  R  T  T  V  P  :  G  L  E  L  Q  R  V  I  W  T  T  A  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0100F12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106326" stop="106184"/>
                    <exon start="106083" stop="106012"/>
                    <exon start="105932" stop="105861"/>
                    <exon start="105761" stop="105684"/>
                    <exon start="105590" stop="105519"/>
                    <exon start="105245" stop="105209"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELYVRRKETKTAILHIELSNDFRDLRANYFVGELPPSFMKLVNLEYFGAQGNNLSGKFPTFIANWTQLETLDLLGNNFEGSWPKEISSLRSLGYLSLSNVVTRGGAYDFPDLSRMTSLEYLILRKCSLRGPIPGYIWELKELQYLDLSFNELSGQLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="118652" PGL_stop="119099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118652" e_stop="119099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="118652" e_stop="119099" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118652" stop="118973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118652" stop="118957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118653" stop="119099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAGTATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCATTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTATACACTTCTGTATATAAAGCGAGAGAGGCGAGCGAGAACGAAGAGTGGCGAGTGAGATTTTTGGGAGAGAGACGCTGACAAATTTTAGCTAATATTTGCTATGCAGCACAATTAAATCAAACCCTAACTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  H  W  S  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  K  I  I  H  F  C  I  *  S  E  R  G  E  R  E  R  R  V  A  S  E  I  F  G  R  E  T  L  T  N  F  S  *  Y  L  L  C  S  T  I  K  S  N  P  N  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  S  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  I  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  K  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  E  E  W  R  V  R  F  L  G  E  R  R  *  Q  I  L  A  N  I  C  Y  A  A  Q  L  N  Q  T  L  T  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  V  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  V  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  Y  I  K  R  E  R  R  A  R  T  K  S  G  E  *  D  F  W  E  R  D  A  D  K  F  *  L  I  F  A  M  Q  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0100F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 91 chains have been computed
$ 
$ memory statistics:
$ 265904 bytes spliced alignments in total
$ 54 spliced alignments have been stored
$ 4924 bytes was the average size of a spliced alignment
$ 27720 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1630 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 106 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:42:29
-->
