<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:34:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602949" ref_strand="-" ref_description="SGN-U602949 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gctttttgtggtcatcatgtttcacatttggatagacaagtaaggccaattgggtgttttggttgagttctcttgtgggaggattgtcaatatctatcaagtggttcataacaagtgaaggaggctgagctcttggatgaagctatttggaggatctgactagtggctgttgggcgaggtcaactctttcagcaattgatgccccgctctgctgcatgacttccataaccgccagagatcaaagtgtattgtaaccattgaagccgcatgtgttcttggtcgttgctgctggaattctcaacattgatgagggggtacgagaccaagcatccatgttaagacgtgtggtaagagggcttctgccattatattggtctaatattggcttgtttttgggaatttagcttcctgtctgtaataagcttggtaggattatgcttatgttggagatgaggttatggttttctgatagttgtgcgaacttaagctgtcatactccgtgagattaacccctcgttaccagaacatagattatgtaataagaagtctttagcctttttcactattgattgtaatcgagaattatctcaaggatgttaagtcagtgtggaactatttactgcgattatctggctctctagagtgatatagatgctgttgaattataagattttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="7178" stop="5211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="6804" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="83" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6803" i_stop="6677" i_length="127">
            <donor d_prob="0.455" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6676" g_stop="6623" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="137" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6622" i_stop="6050" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6049" g_stop="5511" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="677" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-U602949" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602949" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="6804"/>
          <exon e_start="6676" e_stop="6623"/>
          <exon e_start="6049" e_stop="5511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCATGTTTCACATTTGGATAGACAAGTAATGGCAATTGGGTGGTTTTGGTTGAGTTCTCTTGTGGGAGGAGTAAGTATATGAGCGATTTGTATACTTTAAACGTTCCTTCTTCAAATTTTAGAACCCGGTCATGTTCATTTGTCGCACCTGGTTATTGTACTTCTTTTGTGGGTATTGAACAATCTTTGTGCTGCAGTTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGAGTAAGGATCTTGATCTTTTTCTCATTATTTCTACTAGATGATAAAATTATTAGTATCAGAGAGAGATATAGTAAAAAGTTTGCCTAAGTTTTTAGTGTTCAGAAGAATTTTGTTGAAGACCAATTGAGAAACTGGATCTTTCAGAGGGTGCACCGTGTAACATACTCTATGTTCCCCTCGGAATGTTAGTATAACTATTTAAAGTTTTGACAAAAAATTGATTGCGTTGGAATGTATAGCGCGATTGAGTGCACTTTGAAATTGATAAATGCATTGTTTGTGAAGTATGTGTGTGTGTGGTGGTACGAGTGATGGATTGAACGGTGCCAAAGAATTACTAATTTTTTTATGGTGGATGTAATCTGGTTTAGATTTCATTATTTCTTGGATAACTTCTGAAAAGGGTGAATAAATTGTGCGATTTCAATAAGATCTTCAACTGTGGACTAGAATTTTAGTCATTTGGTCTCTTATTTTAATTTCTTAAATATTATTTGACACACCAAATAATTAATGCAACAGAAGTAGGTTGTGTAAGAAACATAATATCTTATATCGTGTTTTTATTGGCAGTGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATG-CCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATT</genome_strand>
        <mrna_strand>GTCATCATGTTTCACATTTGGATAGACAAGTAAGGCCAATTGGGT-GTTTTGGTTGAGTTCTCTTGTGGGAGGA...............................................................................................................................TTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATGCCCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566559" ref_strand="+" ref_description="SGN-U566559 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|118488014|gb|ABK95828.1| (e_value=4e-40) unknown; ">
      <seq>ggggtttccctgaaattggttgccgatgttaatgtatttgcgttgtactctatttcgaatagtagagtttgggtttttgctgtgaaacacctggggggtgaggagctgaaattaatgaagtatgccgtgattgattgttctctgcccgtgttttccattagtgtatcttttggggtcctgattttgggggaagataatggagtcagggttttccccctgcggccattggtcaaaggaagagttaagaaagagagggctaccaataagaaaagtttgaatggtgggttagaaaaagataaaatggagataaaaaagctacctttacgaaatgggatgatacatggcatgaatgctgagattagtgctgctgatggtagtaaattgatggaactgaagtttacttccaatggtatggtcgagaaccgcactgaatcagcaaagttaaggtctgtgagactcagacaagattccagagagggtattgcaaacttcgtggcattcaagaacaaggatgataattttgagtcgatcaagataccggttaagtcagcaaaagctattggcattcaggccttatcttcaaccangtttctgatcttggactctgaaggaaatcttcacctcttgttcccttgcacttctggtcatggatcagagactccttatagcatgaaacagttaactcacaacatgaaagttcgaaagctcactgttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="14538" stop="9235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14238" g_stop="13803" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13802" i_stop="9817" i_length="3986">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9816" g_stop="9535" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="718" r_length="282" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-U566559" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14238" e_stop="13803"/>
          <exon e_start="9816" e_stop="9535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAGGTGCTGGAATACTTTCTGACTTTGCTGTCCATCCATAGCTATTTTAGAAGCTTGGCATTGAGAATCCAAGTTTCTTTTTTTTTTTGAACTGTTCCATTGCTTTTATATTGCAATTATGTTTCTGGTGGTAAATGTAGTACTGTTAATAGCAAAAAGATATGAATCACTCGATCCTGAATATGGGATCTGTACATGTATCTATTATGTTACTCACATTTATACTGTGTTTGCTTCAGGATGTCTATGTATGCTGCATAATAACAAAACTCTGGTTGGATTTTCGGGATCAGTTTCTAAGTAGAAATAACTCCTTAGAAAGATCGAGTAAAAGGATAGGCATTAGTTATTTATCTGGCAACTTTAGCTACCTCCCCTCACGGTAGGGAAGACCCATAACTCCACAAATGGTGGGGTTTGAGATGCTAGATTGTCTCCAAAACAGTGTGTTCTAGTATGTTAAGTAAATGACATCCCATTAGAAAAGTCTGATACCAACAATGTCGTGAGTGATCATCTTTAAGATTTAAGATTCATGTCCTAGTCTTGTACAAATTTGGATGTTAAGATGGCTGTGCAGATATACTGAAGTTGTCAAAATTAGAGATTATCACATCTGTTTGAGAGCACAAATAACAACCGTACATGATAAAATAAGAGGTTATCTAAAATAGTTTAGTTATGTTGTACGGGATCTCTATATGCACATAGTTGCAATAATATTGTGATTAGAAATGATAAAAGAGGACAAAGTAGATCTAAGACCAAATGGAGAAAGGTTGGCTTGATATCCAATGGATCGATTGAAACAGATTTAGCTAAGACATAAAGATAAATACATATATCTTTATGAAAGTATACCAACTAATTTTTATTTAGTTGCTATACTTGCATCATGCCAGGTGTTCGTGAATGACTCATCTTAATCTAGGTACTTGTATATCCTTTTATGGATAAGAGTTAGGTTGAGACGATGCCTAGATTTAGAAAATTTTTAATTTGTATTAAAATGAAATGAACCTGAACAGAGCAGAATGGATGAAGTGGATTCTTATCGTTAAATGTCTTCTCAACAATCCATTTTTCAGGAGTAACTTGTCTTCTGCAAATAACAAGTATTGATCATTTTCTGGTTTTCTTGGCTTCCTGATATATGTTTGAAATCAATAATGTATAAAGCTAATTTTCTCTTTTGTATCTACCACGTCTCTTGATGCCATCACTACTTACTTTATAGGTGACAGAATATTTTTTTTTTATAGCAGACCCCAAATAATTTGGGATTGAGAGGCAATTTATTGGCAGTCATAAATGTGGCAGTATTTTGTTTGGCTTATCAAAGATATGGCTTTAATGTATGTCGTGATTTCTTTATACGTGATACACTTCCTCCCTCTTCTTCCATTGTTGATATCTCTATTTTTCCCACTCTCCAAGATATAAGGTTATTGTCTTGAACTCTAAGTTCATCCTTGGTCAGAATTAAGAAAGGTATCATTGGAAGTGCAGAATCTAAATGAAGTAGAGCTTTCGTGGAAACAATTTGATTGGGTTATAGTCTTGGATTAGCATATTTATGTTGTGTATGATGGTGATGGTTTAATCTGATTTTACTGTTTACCTATAGGCTGCATGAGCACTAAGTTGCATAGACTTTTAATGTTATATATTTTTGGAAGTGATGAAAGATAGAAGTAGTTATTTTGAAAGATGTTAAATCGACCTTGAGATAATGTGAACTAGTGTTAGTTATATCTGCTTCAATTGTAGGAATTACTATGCAGAAAACTCCATTGAATAATATTACTCGTATTCTCTTAGAAGGATGAAAAAAGAGGGTAGGTCAAGTATTTTGGGTGGCGAGAGTTAATATGTTTTAAAAAATCAACCAACAAGCCTAGCCAGTTTGCATATTTGCTCTTATCCCCCATCCTATGTCAGATCCCTCTTAAAGAAAAATACTACAACACAAATATTACACTTGCGTTTAAAGACATAGAATGCGGTGTGAACTAGTTAAGCTAATGACTAAATTGCAAACTTTAGCACTAATTCCGTTCTTTGAGTTTTGGCTCAGAACACTTGGCACTCCATTTCTTGTCCTTTTTTCCTCTTTACTCTGTATCTTTTGCCTTCTCAAAGATATGAATGTTCGACAAGGCTTCTAGGAGATTGCTATATTTATTTCCAGGAAAAGTGTCCTTAGTTGCTACTCATTTTCCTGTCTGGCTATTTTGGGGTGGTTTTTGTCTTTAATCTTAGGAATAAGGCAGAAGTACCACTCTGAACTTTACCCGAAATCCCAACGACACTCTTTAGCTTTACGAGGGTCCTAATATACCCCCCTTTGAACTCATTTTTTAATGAATTTTTGTGTTCCTTTTGTACACGTGTCACCATTGTCCAGGTAAATGACGTGCGGTGTATACTTGTGCTTTTATTACACAAAAAGGGTCCCACTCCATTACTTTACCAAAAACCTTTTAATTTTCCAATAACAAATAAGTTCAAATCTCTCACTTTTTTGAGCCTCGACCTAAACCATGATTTTCATTCTGGTACTTGATATGTAGGTTCCATTTTGGTATTTAGTGTTTGATTTCTTCAGGAGGAGAAAATGAGGTATTGATTTCATTAGGAGGAGAAAAAAATGAGGTATTGATTTTATCAGGAGGAGAAAAAATGAAACTTCTAAAATCAGGACTAATAATTTGACATGAAAGAGGGGTAAAGAAAAGGAATTTACACAAAATAAGCTTACCTTTTTTATTCAAGGAGAAATTTCAAGAAGTGTATTAATTTGGAGCCACCCTAATGGAGAATGAAGAAAGGGTAAATTGAAGATGAAAAGAATCAGCTTTTGAAGAAAGAGTTTTCTTTTTCAACTTTCGCAATTACACTTCGCCAATTCCTATTGATTAGAGCTATTGTACTAATGTTCCCATGCGCCTCAGATTAGTGTATTCACGCGTGGTTCCATGTCAGCACAAAAGGAGCACAAAATACCTAAAAAATGAGTTTTTTTAGGGGTGGGGGTGGGGTCGTGGGGAATAGGGACCCTTGTAAGGTTTAGGCAGTGTTGTAAAAGGCGCTCGCCATAGCGCCTTTGGCAAATGGCGAGGCGAGGCGAGGCGAGGCTGTGTCGCCATTATCCACTGAGGCGAGGCGACCTCAAATAGGCGACCCGAGGCGACCCAATGGCGACGTAAATGGCGTCGCCATTTTGATCTTTTTTTTAAAAAAAAGTTTTAACTTAATAATATTAGGTTTTTTTTTCTATTCTCAAACTTTCATTAGACTTTCGTGTATTCCTCTTCTTCTCTTCCTCGAGTCGCTGCTGCTTCTTCTCTTCCTCAGTCGCTACTCTCTTCTTCTCTTCCTCAGTCGCTGCTCTCTTCTTCGTCTCTTTTCCTCGAGTTGCTGCTCCATTCGTCTCTTTCTCTTTCACTCTTCACTGCTCCTTGCCTTCACTACTCTTTTTTTCCCTCTGTTTTCTTCACTCTCTGTTTTGTCCCGGATTACTGTAAAATGCTTTTTGCTTTCACTGTGCTGTGACTGTTGTCCATTATTTTTTTGAAAAAAAATTAATTCTTCTATAGTAATTATTATAGTATTTGTAATATATGTAATTGCTATTGAAATTTTGAATATTATATGTGCAATTAAATGTTGTTAATTTTTTGTATTAATTGGTGCCTCGATTAAAAAAGGCGAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTCTCGCCGTCCAAAACACTGGTTTTAGGTGTGTCGCTCGAATTTAGGGTATAGTTTGGGGTGGTACTTGTGCCTTGTTCCTTAATCTTATTACAGTGATACTTTGGTTGTTTTTGCTATTGTAAAAATGTAGTTTGACATCATTTAAGTTTTCTTTGATTTCGCCATCATGTTAAGATCTAGAAGCTCCAATTCTGTTGTTGTTTCCTACAGCTGCTAATTGTGCATTCTAACTTGCAGCAAAGTTAAGGTCTGTGAGACTCAGACAAGATTCCAGAGAGGGTATTGCAAACTTCGTGGCATTCAAGAACAAGGATGATAATTTTGAGTCGATCAAGATACCGGTTAAGTCAGCAAAAGCTATTGGCATTCAGGCCTTATCTTCAACCAGGTTTCTGATCTTGGACTCTGAAGGAAATCTTCACCTCTTGTTCCCTGCAACTTCTGTTCATGGATCAGAGACTCCTTATAGCATGAAACAGTTAACTCACAACATGAAAGTTCGAAAGCTCACTGTTCTTC</genome_strand>
        <mrna_strand>GGGGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTTAAGGTCTGTGAGACTCAGACAAGATTCCAGAGAGGGTATTGCAAACTTCGTGGCATTCAAGAACAAGGATGATAATTTTGAGTCGATCAAGATACCGGTTAAGTCAGCAAAAGCTATTGGCATTCAGGCCTTATCTTCAACCANGTTTCTGATCTTGGACTCTGAAGGAAATCTTCACCTCTTGTTCCCTTGCACTTCTGGTCATGGATCAGAGACTCCTTATAGCATGAAACAGTTAACTCACAACATGAAAGTTCGAAAGCTCACTGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562649" ref_strand="+" ref_description="SGN-U562649 Tomato 200607#2 [37 ESTs aligned] (*GB) gi|14423351|gb|AAK62358.1|AF384374_1 (e_value=3e-104) allene; (*ATH) AT3G25780.1 (e_value=2e-57)  Symbol: None | allene oxide cyclase, putative / early-responsive to dehydration protein, putative / ERD protein, putative, similar to allene oxide cyclase GI:8977961 from (Lycopersicon esculentum); similar to early-responsive to dehydration (ERD12) ... ; (*SWP) sp|Q9LS01|AOC3_ARATH (e_value=1e-56) Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3; ">
      <seq>ggccattacgggccggggatcagtatcaacaacaacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttattataaagtccagaaaaagataaaaatgaaaaaattatttggtaatgaattcaaggacgtatttgttcgataactatttgaaccatagagttctcccttacaaaggagatttcatatccaaagagatcgaaattgagaccactatgctctgaagggcttgaatccaagacctcaccgcaaccctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20740" stop="18755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20440" g_stop="20162" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="297" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="419" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19055" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="1235" r_length="816" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-U562649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1217</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U562649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20440" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGACGTATTTGTTCGATAACTATTTGAACCATAGAGTTCTCCCTTACAAAGGAGATTTCATATCCAAAGAGATCGAAATTGAGACCACTATGCTCTGAAGGGCTTGAATCCAAGACCTCACCGCAACCCTCG</genome_strand>
        <mrna_strand>ATCAGTATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGACGTATTTGTTCGATAACTATTTGAACCATAGAGTTCTCCCTTACAAAGGAGATTTCATATCCAAAGAGATCGAAATTGAGACCACTATGCTCTGAAGGGCTTGAATCCAAGACCTCACCGCAACCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602468" ref_strand="+" ref_description="SGN-U602468 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>atatattagacttcaaaatttaacttcaaattttaattttgatcttcaactttcatagtacataaatacgcactttaattatcctactatttaataaataagcacgtgatttttatctgtcaaaacgcgtgaaaatcacgtattctacgcgcgtgaggagtaattttttaagctcacaacagaaaaaaatgctgaaatgacaattctaccaccccggattccgtccaatctccgacaacccaaaaaacccattcattttgcccaaccgttcttcttcttcctccacaccgaagcacaacccatgaagcgaacgaacttcaaactcgctgaacccaccaaatacttgaccccaaacccatcagatttgtcgtctccggcgagaatcatcaccaaactgctgcaaccagcagctcgaacaagacacaaaacagcagccaaatgaccccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="+" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="22207" stop="23254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22507" g_stop="22954" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="+" ref_id="SGN-U602468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22507" e_stop="22954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTAGACTTCAAAATTTAACTTCAAATTTTAATTTTGATCTTCAACTTTCATAGTACATAAATACGCACTTTAATTATCCTACTATTTAATAAATAAGCACGTGATTTTTATCTGTCAAAACGCGTGAAAATCACGTATTCTACGCGCGTGAGGAGTAATTTTTTAAGCTCACAACAGAAAAAAATGCTGAAATGACAATTCTACCACCCCGGATTCCGTCCAATCTCCGACAACCCAAAAAACCCATTCATTTTGCCCAACCGTTCTTCTTCTTCCTCCACACCGAAGCACAACCCATGAAGCGAACGAACTTCAAACTCGCTGAACCCACCAAATACTTGACCCCAAACCCATCAGATTTGTCGTCTCCGGCGAGAATCATCACCAAACTGCTGCAACCAGCAGCTCGAACAAGACACAAAACAGCAGCCAAATGACCCCCA</genome_strand>
        <mrna_strand>ATATATTAGACTTCAAAATTTAACTTCAAATTTTAATTTTGATCTTCAACTTTCATAGTACATAAATACGCACTTTAATTATCCTACTATTTAATAAATAAGCACGTGATTTTTATCTGTCAAAACGCGTGAAAATCACGTATTCTACGCGCGTGAGGAGTAATTTTTTAAGCTCACAACAGAAAAAAATGCTGAAATGACAATTCTACCACCCCGGATTCCGTCCAATCTCCGACAACCCAAAAAACCCATTCATTTTGCCCAACCGTTCTTCTTCTTCCTCCACACCGAAGCACAACCCATGAAGCGAACGAACTTCAAACTCGCTGAACCCACCAAATACTTGACCCCAAACCCATCAGATTTGTCGTCTCCGGCGAGAATCATCACCAAACTGCTGCAACCAGCAGCTCGAACAAGACACAAAACAGCAGCCAAATGACCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568990" ref_strand="+" ref_description="SGN-U568990 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ccttagagaggcagagcaagcaaggagagaagaggaagaagcagaaaaaagaaggcaggaggaggaagaatcaaggagagaggagaaagcaagaagaaggcaacaggaggaagcaaggaggagagaggaggaagaagcagcaaaaaggcaacatgaggaagaagcagagagagaggcagaggaagcaagaaggatagaggaggaagaagcacaaagagaggcagaagaagcaaggagaatacaacaggaggaagaagcagagagagcaaggagaagagaagaagaagcagaaacaagaaggaaggaggaggaggaggaagaatcaaggagacaagaggaggaatcaaggaggagtgaagaagaggcagcaagagaggcagagagggaaaggcaagaggaagctgaaagacaagaagaagctaggagacgggaggaagaaacagaagagaggcatcaacaagaagaaaccgaggaagaggagccaggccaacctgaaatgaacggatattcctcaaactagcctatgagtgtgttgtgtaactagtgtactcagcaagttctcaggagctgaatagtctctacgtttttgtataatctcatgtgtgtgtacgtcttttcatttacttttgctgtcatatttatgagtttatgtaataacaccgaaacaagttttcatagatcacttttccctggcaagtctccagcaatgtagcagaaggtgttaggatgttatctggatgaaagcagttcatacatttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="+" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="28784" stop="30141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29080" g_stop="29841" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="+" ref_id="SGN-U568990" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29080" e_stop="29841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</genome_strand>
        <mrna_strand>CCTTAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576548" ref_strand="+" ref_description="SGN-U576548 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|9858780|gb|AAG01127.1|AF273333_12 (e_value=3e-110) BAC19.12; (*ATH) AT5G66730.1 (e_value=1e-26) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr5:26658878-26661628 REVERSE | Aliases: MSN2.12, MSN2_12; ">
      <seq>accgtcaactgccgtaatgtcatttgcttcctctgttcaaaatcgagaattgcgggagaatccagtcacaaattctgctggagctgctacgaagcaagttctggaggaagcagcagcggtagcaagcttgactggaaactgtagcagctcttgtagtaatggaagtagtagcagcaatgtctttggaagtttgtttgcttcatcaacagcttcgggaagtttgccatctcaagctcctgttttttctgatatatttcgagccatggcgcctgagcacactcttgagatggcaccaccttcatctacagaaccaatatctctcggcctagcgatgagtcacagttcgtcaatttttagaccagctggtcaagaacggaggcaatatgctcccgcaccacaaccagctatgtcggcaacagcattactgcagaaggcagctcagatgggtgcagcagcaaccagctcatcgttcttgaggggcattggggttatgtcctccacgtcatcttcaaacggtcatcaagaatggagtgggagacccagtgatgccaatggtgcatcattagctgcaggtcttggtcttggactaccgtgtgacgctggttctggtctaaaggaattaatgttgggaactccctcggtgtttggtcccaaacatcccactcttgacctccttggattaggaatggcagctagtgtcggtccatcgcctggattatctgcccttttaacatccatgggtagcaatcttgacatggtgacttcagctggatcatttggtagtgcagatttcagtgggaaagacttgggaagaaattcatgatatcttagagtcaggtttaatttattctgtataggacaatgaatttcacttgatgcagcaaaaaacatattggcaagctctcagccccaaagatttgagcataggatggcaggaggaaagaaggcagttggacacttttaagattgttctactgtctcctttgtgtaggaaaagtagaaaggttttttttctgctgtacagtagaagttgaatgtatagctgtattaaaactcctctgctttttgttacagatgaagctgttaatgtgtttagtatataatttgctataagcatatttaaccaagagaggctcatctagtgggaatttttatcaaatggtatctctatttcagacagtgcaaatttttataaaatttgtataattcagatgcataactaatgcagacagggttaaactctttgagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="35516" stop="33206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35216" g_stop="35170" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35169" i_stop="34708" i_length="462">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34707" g_stop="33505" g_length="1203"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="1251" r_length="1204" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-U576548" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1250</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35216" e_stop="35170"/>
          <exon e_start="34707" e_stop="33505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAGGTACCTTCTCTGCGTTTGATGTTTGTCGCATTTGTGTTTGTTACATATCAAACAAAATAACTTTGTTGTTTCTATATCTTGGAAGCTAGTTAATTTTGTCATTTATTGATCTTTGTTCTTATCTGTATTTATTCTTTGTACAAAATCATTTATCTTTTTCTATTAATCAATCAGAATCTTGTAGACAGAAGTAGGGTCTAAAATAGGAAGGAAAAAAATGAAGAAAATGATCGGATAATTAATTATAAACTAAGATTCAATGTCATGAAACCGTTGGCTAAAGAAAGAATAAGTAGTATAATGCTTAAATAAGGTAAAGATTGTAAAGAAAAGATACTATATTTGGATCTCCTTTTGCAATAGATAATGTTCTTTTTCTATGAAAAGTTTTAACTTTCTCTGTTTCCTTAAAGAAGTATGCTTCTTTTCATCTTTTTAATATAACTGCTACAATTTGTGCAGAATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATGTCCTCCACGTCATCTTCAAACGGTCATCAAGAATGGAGTGGGAGACCCAGTGATGCCAATGGTGCATCATTAGCTGCAGGTCTTGGTCTTGGACTACCGTGTGACGCTGGTTCTGGTCTAAAGGAATTAATGTTGGGAACTCCCTCGGTGTTTGGTCCCAAACATCCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAG-CAGTGTTAAACTCTTTGAGCAA</genome_strand>
        <mrna_strand>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCTGTTCAAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTCTGGAGGAAGCAGCAGCGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTTTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATGTCCTCCACGTCATCTTCAAACGGTCATCAAGAATGGAGTGGGAGACCCAGTGATGCCAATGGTGCATCATTAGCTGCAGGTCTTGGTCTTGGACTACCGTGTGACGCTGGTTCTGGTCTAAAGGAATTAATGTTGGGAACTCCCTCGGTGTTTGGTCCCAAACATCCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGACAGGGTTAAACTCTTTGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576090" ref_strand="+" ref_description="SGN-U576090 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|9858780|gb|AAG01127.1|AF273333_12 (e_value=2e-25) BAC19.12; (*ATH) AT5G66730.1 (e_value=2e-16) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr5:26658878-26661628 REVERSE | Aliases: MSN2.12, MSN2_12; (*SWP) sp|Q700D2|JKD_ARATH (e_value=2e-13) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD; ">
      <seq>ggactttttttgcggtctctgttttcacattaaatttcctctctttctctctattgatttccgagccgccgacttgcgttgtcacaactgcttctcattttcatcgagtttttcttcattacttttacttataagcaaacccatttactcgaacttagcgactttcccggcagaaagttcacgccggtgattgactttctggtgattttggaatctgggtttttcagctaatttctatgttatggggatttgctattttagcttggtttgatcaaaactggtagttgggtgtatgaaagaaagaaaaacgaaaaagcaagattgactggtagatacggcgaaaagagagaaagtattgactcccccaagaaaagattgatatcaaaaaggtttttttaacataaatgttctaaagatttgcttttttgagcaacccccccccccaaaaaaaaaaaaaaaaaacatgccggccgacccagataactcatccgccatgaacgattctacaggctcaggtgaagcaagcgtttcgtcttcaggtaatcaagtagttcctctgaaagaatcagccaagaagaaacggaatcttcctgggatgccagatttgattttctgtttttggttgctttgattagatcccgatgcagaggttattgctttgtcaccaacaactttgctggcgacgaacagatttgtttgtgaaatttgtagtaaagggtttcaaagaaccagaatttgcagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="36915" stop="35513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36616" g_stop="36015" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36014" i_stop="35957" i_length="58">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35956" g_stop="35813" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="745" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-U576090" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36616" e_stop="36015"/>
          <exon e_start="35956" e_stop="35813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTTTTTTGCGGTCTCTGTTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCCAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAGGTAAATCATGTTCCGTTACGATTCTTGATGAACCCAATTTTACTAATATTCAGCGAAGATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTGGCGACGAACAGATTTGTTTGTGAAATTTGTAGTAAAGGGTTTCAAAGAGACCAGAATTTGCAGCTTC</genome_strand>
        <mrna_strand>GGACTTTTTTTGCGGTCTCTGTTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCAAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAG..........................................................ATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTGGCGACGAACAGATTTGTTTGTGAAATTTGTAGTAAAGGGTTTCAAAGA-ACCAGAATTTGCAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6877" PGL_stop="5511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6877" e_stop="6804"/>
            <exon e_start="6676" e_stop="6623"/>
            <exon e_start="6049" e_stop="5511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.455" acc_prob="0.949" e_score="0.959"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="6877" e_stop="6804" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.455" acc_prob="0.949">
            <gDNA_intron_boundary i_start="6803" i_stop="6677" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6676" e_stop="6623" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6622" i_stop="6050" i_length="573"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="6049" e_stop="5511" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="6804"/>
              <exon start="6676" stop="6623"/>
              <exon start="6049" stop="5511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602949" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATCATGTTTCACATTTGGATAGACAAGTAATGGCAATTGGGTGGTTTTGGTTGAGTTCTCTTGTGGGAGGA : TTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGA : TGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATGCCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATT</gDNA_template>
            <first_frame> V  I  M  F  H  I  W  I  D  K  *  W  Q  L  G  G  F  G  *  V  L  L  W  E  D :   C  Q  Y  L  S  S  G  S  *  Q  V  K  E  A  E  L  L  D :   E  A  I  W  R  I  *  L  V  A  V  G  R  G  Q  L  F  Q  Q  L  M  P  A  L  L  H  D  F  H  N  R  Q  R  S  K  C  I  V  T  I  E  A  A  C  V  L  G  R  C  C  W  N  S  Q  H  *  *  G  G  T  R  P  S  I  H  V  K  T  C  G  K  R  A  S  A  I  I  L  V  *  Y  W  L  V  F  G  N  L  A  S  C  L  *  *  A  W  *  D  Y  A  Y  V  G  D  E  V  M  V  F  *  *  L  C  E  L  K  L  S  Y  S  V  R  L  T  P  R  Y  Q  N  I  D  Y  V  I  R  S  L  *  P  F  S  L  L  I  V  I  E  N  Y  L  K  D  V  K  S  V  W  N  Y  L  L  R  L  S  G  S  L  E  *  Y  R  C  C  *  I  I  R  F  Y  </first_frame>
            <second_frame>  S  S  C  F  T  F  G  *  T  S  N  G  N  W  V  V  L  V  E  F  S  C  G  R   : I  V  N  I  Y  Q  V  V  H  N  K  *  R  R  L  S  S  W   : M  K  L  F  G  G  S  D  *  W  L  L  G  E  V  N  S  F  S  N  *  C  P  L  C  C  M  T  S  I  T  A  R  D  Q  S  V  L  *  P  L  K  P  H  V  F  L  V  V  A  A  G  I  L  N  I  D  E  G  V  R  D  Q  A  S  M  L  R  R  V  V  R  G  L  L  P  L  Y  W  S  N  I  G  L  F  L  G  I  *  L  P  V  C  N  K  L  G  R  I  M  L  M  L  E  M  R  L  W  F  S  D  S  C  A  N  L  S  C  H  T  P  *  D  *  P  L  V  T  R  T  *  I  M  *  *  E  V  F  S  L  F  H  Y  *  L  *  S  R  I  I  S  R  M  L  S  Q  C  G  T  I  Y  C  D  Y  L  A  L  *  S  D  I  D  A  V  E  L  *  D  F  I </second_frame>
            <third_frame>   H  H  V  S  H  L  D  R  Q  V  M  A  I  G  W  F  W  L  S  S  L  V  G  G  :  L  S  I  S  I  K  W  F  I  T  S  E  G  G  *  A  L  G  :  *  S  Y  L  E  D  L  T  S  G  C  W  A  R  S  T  L  S  A  I  D  A  R  S  A  A  *  L  P  *  P  P  E  I  K  V  Y  C  N  H  *  S  R  M  C  S  W  S  L  L  L  E  F  S  T  L  M  R  G  Y  E  T  K  H  P  C  *  D  V  W  *  E  G  F  C  H  Y  I  G  L  I  L  A  C  F  W  E  F  S  F  L  S  V  I  S  L  V  G  L  C  L  C  W  R  *  G  Y  G  F  L  I  V  V  R  T  *  A  V  I  L  R  E  I  N  P  S  L  P  E  H  R  L  C  N  K  K  S  L  A  F  F  T  I  D  C  N  R  E  L  S  Q  G  C  *  V  S  V  E  L  F  T  A  I  I  W  L  S  R  V  I  *  M  L  L  N  Y  K  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0097L01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14238" PGL_stop="9535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14238" e_stop="13803"/>
            <exon e_start="9816" e_stop="9535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.748" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14238" e_stop="13803" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.748" acc_prob="0.967">
            <gDNA_intron_boundary i_start="13802" i_stop="9817" i_length="3986"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="9816" e_stop="9535" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14238" stop="13803"/>
              <exon start="9816" stop="9535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAG : CAAAGTTAAGGTCTGTGAGACTCAGACAAGATTCCAGAGAGGGTATTGCAAACTTCGTGGCATTCAAGAACAAGGATGATAATTTTGAGTCGATCAAGATACCGGTTAAGTCAGCAAAAGCTATTGGCATTCAGGCCTTATCTTCAACCAGGTTTCTGATCTTGGACTCTGAAGGAAATCTTCACCTCTTGTTCCCTGCAACTTCTGTTCATGGATCAGAGACTCCTTATAGCATGAAACAGTTAACTCACAACATGAAAGTTCGAAAGCTCACTGTTCTTC</gDNA_template>
            <first_frame> G  V  S  L  K  L  V  A  D  V  N  V  F  A  L  Y  S  I  S  N  S  R  V  W  V  F  A  V  K  H  L  G  G  E  E  L  K  L  M  K  Y  A  V  I  D  C  S  L  P  V  F  S  I  S  V  S  F  G  V  L  I  L  G  E  D  N  G  V  R  V  F  P  L  R  P  L  V  K  G  R  V  K  K  E  R  A  T  N  K  K  S  L  N  G  G  L  E  K  D  K  M  E  I  K  K  L  P  L  R  N  G  M  I  H  G  M  N  A  E  I  S  A  A  D  G  S  K  L  M  E  L  K  F  T  S  N  G  M  V  E  N  R  T  E  S   : A  K  L  R  S  V  R  L  R  Q  D  S  R  E  G  I  A  N  F  V  A  F  K  N  K  D  D  N  F  E  S  I  K  I  P  V  K  S  A  K  A  I  G  I  Q  A  L  S  S  T  R  F  L  I  L  D  S  E  G  N  L  H  L  L  F  P  A  T  S  V  H  G  S  E  T  P  Y  S  M  K  Q  L  T  H  N  M  K  V  R  K  L  T  V  L  </first_frame>
            <second_frame>  G  F  P  *  N  W  L  P  M  L  M  Y  L  R  C  T  L  F  R  I  V  E  F  G  F  L  L  *  N  T  W  G  V  R  S  *  N  *  *  S  M  P  *  L  I  V  L  C  P  C  F  P  L  V  Y  L  L  G  S  *  F  W  G  K  I  M  E  S  G  F  S  P  C  G  H  W  S  K  E  E  L  R  K  R  G  L  P  I  R  K  V  *  M  V  G  *  K  K  I  K  W  R  *  K  S  Y  L  Y  E  M  G  *  Y  M  A  *  M  L  R  L  V  L  L  M  V  V  N  *  W  N  *  S  L  L  P  M  V  W  S  R  T  A  L  N  Q  :  Q  S  *  G  L  *  D  S  D  K  I  P  E  R  V  L  Q  T  S  W  H  S  R  T  R  M  I  I  L  S  R  S  R  Y  R  L  S  Q  Q  K  L  L  A  F  R  P  Y  L  Q  P  G  F  *  S  W  T  L  K  E  I  F  T  S  C  S  L  Q  L  L  F  M  D  Q  R  L  L  I  A  *  N  S  *  L  T  T  *  K  F  E  S  S  L  F  F </second_frame>
            <third_frame>   G  F  P  E  I  G  C  R  C  *  C  I  C  V  V  L  Y  F  E  *  *  S  L  G  F  C  C  E  T  P  G  G  *  G  A  E  I  N  E  V  C  R  D  *  L  F  S  A  R  V  F  H  *  C  I  F  W  G  P  D  F  G  G  R  *  W  S  Q  G  F  P  P  A  A  I  G  Q  R  K  S  *  E  R  E  G  Y  Q  *  E  K  F  E  W  W  V  R  K  R  *  N  G  D  K  K  A  T  F  T  K  W  D  D  T  W  H  E  C  *  D  *  C  C  *  W  *  *  I  D  G  T  E  V  Y  F  Q  W  Y  G  R  E  P  H  *  I  S :   K  V  K  V  C  E  T  Q  T  R  F  Q  R  G  Y  C  K  L  R  G  I  Q  E  Q  G  *  *  F  *  V  D  Q  D  T  G  *  V  S  K  S  Y  W  H  S  G  L  I  F  N  Q  V  S  D  L  G  L  *  R  K  S  S  P  L  V  P  C  N  F  C  S  W  I  R  D  S  L  *  H  E  T  V  N  S  Q  H  E  S  S  K  A  H  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14238" stop="13803"/>
                    <exon start="9816" stop="9536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVSLKLVADVNVFALYSISNSRVWVFAVKHLGGEELKLMKYAVIDCSLPVFSISVSFGVLILGEDNGVRVFPLRPLVKGRVKKERATNKKSLNGGLEKDKMEIKKLPLRNGMIHGMNAEISAADGSKLMELKFTSNGMVENRTESAKLRSVRLRQDSREGIANFVAFKNKDDNFESIKIPVKSAKAIGIQALSSTRFLILDSEGNLHLLFPATSVHGSETPYSMKQLTHNMKVRKLTVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20440" PGL_stop="19055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20440" e_stop="20162"/>
            <exon e_start="20073" e_stop="19952"/>
            <exon e_start="19870" e_stop="19055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20440" e_stop="20162" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20073" e_stop="19952" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19870" e_stop="19055" e_length="816"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20440" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAGTATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA : CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG : CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGACGTATTTGTTCGATAACTATTTGAACCATAGAGTTCTCCCTTACAAAGGAGATTTCATATCCAAAGAGATCGAAATTGAGACCACTATGCTCTGAAGGGCTTGAATCCAAGACCTCACCGCAACCCTCG</gDNA_template>
            <first_frame> I  S  I  N  N  N  L  I  *  V  F  F  F  D  R  *  N  Q  Q  I  V  Q  Q  W  P  L  F  P  Q  P  L  L  L  L  E  P  F  L  L  P  H  P  S  Y  L  L  P  S  K  L  K  R  S  N  L  L  N  Y  L  T  L  S  F  L  R  I  I  N  L  L  P  P  L  L  L  L  P  D  H  F  P  A  R  A  R  A  P  Q  Q  I  Q  L  T  :  L  K  F  K  N  L  V  S  M  R  S  M  N  V  I  V  E  A  L  L  I  F  D  *  A  K  R  L  L  I  H  S  E  I  L  S  P  L  A  T  S :   Y  I  L  Q  I  *  R  R  E  L  E  *  Q  Q  D  S  A  F  *  S  S  T  K  K  R  R  K  E  I  A  M  K  L  F  T  A  S  T  S  A  I  T  V  I  S  P  F  R  E  R  T  *  P  M  K  K  L  T  *  P  S  P  V  D  P  A  Y  L  Q  G  F  P  V  K  *  N  C  S  N  S  F  S  L  S  S  Y  F  T  L  F  T  *  R  G  S  P  V  C  H  L  N  C  C  V  R  R  F  L  R  R  R  R  W  S  Q  H  L  K  L  K  L  V  R  K  G  P  H  *  K  I  T  L  I  K  W  G  C  *  C  A  N  H  N  F  C  W  G  R  S  E  I  I  N  N  Y  V  L  *  N  *  K  K  K  *  H  Q  R  P  F  I  L  Q  F  L  V  C  Y  L  S  F  C  W  V  K  V  *  L  F  C  *  Y  F  V  C  M  P  I  I  *  I  V  S  L  C  D  T  F  H  L  Y  Y  K  V  Q  K  K  I  K  M  K  K  L  F  G  N  E  F  K  D  V  F  V  R  *  L  F  E  P  *  S  S  P  L  Q  R  R  F  H  I  Q  R  D  R  N  *  D  H  Y  A  L  K  G  L  N  P  R  P  H  R  N  P   </first_frame>
            <second_frame>  S  V  S  T  T  T  S  F  K  S  S  F  L  T  A  R  T  N  K  L  F  S  N  G  H  C  F  L  S  L  C  C  S  *  N  H  F  F  F  L  I  Q  A  I  F  C  L  P  N  *  K  D  P  I  F  *  T  T  *  P  S  H  F  S  E  S  *  T  Y  Y  H  L  Y  Y  C  F  Q  I  I  F  L  Q  E  P  E  H  L  N  R  F  N  *  H :   *  S  S  R  T  *  C  L  *  D  Q  *  T  *  S  W  K  P  C  L  S  S  I  E  P  K  D  C  *  F  T  R  R  S  C  P  L  *  Q  Q   : A  I  Y  C  R  S  K  E  E  N  W  N  N  S  R  T  L  H  S  D  Q  A  R  R  R  E  E  R  R  S  L  *  S  C  L  Q  L  L  L  R  R  L  R  S  Y  R  R  S  G  S  V  L  N  L  *  R  N  L  P  S  R  H  R  W  I  R  H  I  C  R  G  F  R  S  S  E  I  A  A  T  H  F  P  F  Q  A  I  L  H  F  L  L  E  G  D  P  R  S  A  I  *  I  V  V  Y  G  G  S  S  V  A  D  G  G  A  N  T  *  S  *  S  L  *  G  R  G  R  T  E  K  L  H  *  L  S  G  G  V  D  V  Q  I  T  T  F  V  G  V  V  L  K  *  S  I  T  T  C  S  R  I  K  K  K  S  N  I  N  V  L  L  F  C  N  F  W  Y  V  I  C  R  F  V  G  *  K  F  N  C  F  V  S  T  L  Y  V  C  L  L  S  E  L  Y  P  Y  V  I  R  S  I  F  I  I  K  S  R  K  R  *  K  *  K  N  Y  L  V  M  N  S  R  T  Y  L  F  D  N  Y  L  N  H  R  V  L  P  Y  K  G  D  F  I  S  K  E  I  E  I  E  T  T  M  L  *  R  A  *  I  Q  D  L  T  A  T  L  </second_frame>
            <third_frame>   Q  Y  Q  Q  Q  P  H  L  S  L  L  F  *  P  L  E  P  T  N  C  S  A  M  A  T  V  S  S  A  S  A  A  L  R  T  I  S  S  S  S  S  K  L  S  S  A  F  Q  T  K  K  I  Q  S  F  K  L  P  N  P  L  I  S  Q  N  H  K  L  T  T  T  S  T  T  A  S  R  S  F  S  C  K  S  Q  S  T  S  T  D  S  T  N   : T  E  V  Q  E  L  S  V  Y  E  I  N  E  R  D  R  G  S  P  A  Y  L  R  L  S  Q  K  T  V  N  S  L  G  D  L  V  P  F  S  N  K  :  L  Y  T  A  D  L  K  K  R  I  G  I  T  A  G  L  C  I  L  I  K  H  E  E  E  K  K  G  D  R  Y  E  A  V  Y  S  F  Y  F  G  D  Y  G  H  I  A  V  Q  G  A  Y  L  T  Y  E  E  T  Y  L  A  V  T  G  G  S  G  I  F  A  G  V  S  G  Q  V  K  L  Q  Q  L  I  F  P  F  K  L  F  Y  T  F  Y  L  K  G  I  P  G  L  P  S  E  L  L  C  T  A  V  P  P  S  P  T  V  E  P  T  P  E  A  K  A  C  E  E  G  A  A  L  K  N  Y  T  N  *  V  G  V  L  M  C  K  S  Q  L  L  L  G  S  F  *  N  N  Q  *  L  R  A  L  E  L  K  K  K  V  T  S  T  S  F  Y  F  A  I  F  G  M  L  F  V  V  L  L  G  K  S  L  T  V  L  L  V  L  C  M  Y  A  Y  Y  L  N  C  I  P  M  *  Y  V  P  S  L  L  *  S  P  E  K  D  K  N  E  K  I  I  W  *  *  I  Q  G  R  I  C  S  I  T  I  *  T  I  E  F  S  L  T  K  E  I  S  Y  P  K  R  S  K  L  R  P  L  C  S  E  G  L  E  S  K  T  S  P  Q  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20399" stop="20162"/>
                    <exon start="20073" stop="19952"/>
                    <exon start="19870" stop="19469"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLEPTNCSAMATVSSASAALRTISSSSSKLSSAFQTKKIQSFKLPNPLISQNHKLTTTSTTASRSFSCKSQSTSTDSTNTEVQELSVYEINERDRGSPAYLRLSQKTVNSLGDLVPFSNKLYTADLKKRIGITAGLCILIKHEEEKKGDRYEAVYSFYFGDYGHIAVQGAYLTYEETYLAVTGGSGIFAGVSGQVKLQQLIFPFKLFYTFYLKGIPGLPSELLCTAVPPSPTVEPTPEAKACEEGAALKNYTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22507" PGL_stop="22954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22507" e_stop="22954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22507" e_stop="22954" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22507" stop="22954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATTAGACTTCAAAATTTAACTTCAAATTTTAATTTTGATCTTCAACTTTCATAGTACATAAATACGCACTTTAATTATCCTACTATTTAATAAATAAGCACGTGATTTTTATCTGTCAAAACGCGTGAAAATCACGTATTCTACGCGCGTGAGGAGTAATTTTTTAAGCTCACAACAGAAAAAAATGCTGAAATGACAATTCTACCACCCCGGATTCCGTCCAATCTCCGACAACCCAAAAAACCCATTCATTTTGCCCAACCGTTCTTCTTCTTCCTCCACACCGAAGCACAACCCATGAAGCGAACGAACTTCAAACTCGCTGAACCCACCAAATACTTGACCCCAAACCCATCAGATTTGTCGTCTCCGGCGAGAATCATCACCAAACTGCTGCAACCAGCAGCTCGAACAAGACACAAAACAGCAGCCAAATGACCCCCA</gDNA_template>
            <first_frame> I  Y  *  T  S  K  F  N  F  K  F  *  F  *  S  S  T  F  I  V  H  K  Y  A  L  *  L  S  Y  Y  L  I  N  K  H  V  I  F  I  C  Q  N  A  *  K  S  R  I  L  R  A  *  G  V  I  F  *  A  H  N  R  K  K  C  *  N  D  N  S  T  T  P  D  S  V  Q  S  P  T  T  Q  K  T  H  S  F  C  P  T  V  L  L  L  P  P  H  R  S  T  T  H  E  A  N  E  L  Q  T  R  *  T  H  Q  I  L  D  P  K  P  I  R  F  V  V  S  G  E  N  H  H  Q  T  A  A  T  S  S  S  N  K  T  Q  N  S  S  Q  M  T  P  </first_frame>
            <second_frame>  Y  I  R  L  Q  N  L  T  S  N  F  N  F  D  L  Q  L  S  *  Y  I  N  T  H  F  N  Y  P  T  I  *  *  I  S  T  *  F  L  S  V  K  T  R  E  N  H  V  F  Y  A  R  E  E  *  F  F  K  L  T  T  E  K  N  A  E  M  T  I  L  P  P  R  I  P  S  N  L  R  Q  P  K  K  P  I  H  F  A  Q  P  F  F  F  F  L  H  T  E  A  Q  P  M  K  R  T  N  F  K  L  A  E  P  T  K  Y  L  T  P  N  P  S  D  L  S  S  P  A  R  I  I  T  K  L  L  Q  P  A  A  R  T  R  H  K  T  A  A  K  *  P  P </second_frame>
            <third_frame>   I  L  D  F  K  I  *  L  Q  I  L  I  L  I  F  N  F  H  S  T  *  I  R  T  L  I  I  L  L  F  N  K  *  A  R  D  F  Y  L  S  K  R  V  K  I  T  Y  S  T  R  V  R  S  N  F  L  S  S  Q  Q  K  K  M  L  K  *  Q  F  Y  H  P  G  F  R  P  I  S  D  N  P  K  N  P  F  I  L  P  N  R  S  S  S  S  S  T  P  K  H  N  P  *  S  E  R  T  S  N  S  L  N  P  P  N  T  *  P  Q  T  H  Q  I  C  R  L  R  R  E  S  S  P  N  C  C  N  Q  Q  L  E  Q  D  T  K  Q  Q  P  N  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22670" stop="22948"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFKLTTEKNAEMTILPPRIPSNLRQPKKPIHFAQPFFFFLHTEAQPMKRTNFKLAEPTKYLTPNPSDLSSPARIITKLLQPAARTRHKTAAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29080" PGL_stop="29841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29080" e_stop="29841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29080" e_stop="29841" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29080" stop="29841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</gDNA_template>
            <first_frame> T  K  R  G  R  A  S  K  E  R  R  G  R  S  R  K  K  K  A  G  G  G  R  I  K  E  R  G  E  S  K  K  K  A  T  G  G  S  K  E  E  R  G  G  R  S  S  K  K  A  T  *  G  R  S  R  E  R  G  R  G  S  K  K  D  R  G  G  R  S  T  K  R  G  R  R  S  K  E  N  T  T  G  G  R  S  R  E  S  K  E  K  R  R  R  S  R  N  K  K  E  G  G  G  G  G  R  I  K  E  T  R  G  G  I  K  E  E  *  R  R  G  S  K  R  G  R  E  G  K  A  R  G  S  *  K  T  R  R  S  *  E  T  G  G  R  N  R  R  E  A  S  T  R  R  N  R  G  R  G  A  R  P  T  *  N  E  R  I  F  L  K  L  A  Y  E  C  V  V  *  L  V  Y  S  A  S  S  Q  E  L  N  S  L  Y  V  F  V  *  S  H  V  C  V  R  L  F  I  Y  F  C  C  H  I  Y  E  F  M  *  *  H  R  N  K  F  S  *  I  T  F  P  W  Q  V  S  S  N  V  A  E  G  V  R  M  L  S  G  *  K  Q  F  I  H  L  N </first_frame>
            <second_frame>  Q  R  E  A  E  Q  A  R  R  E  E  E  E  A  E  K  R  R  Q  E  E  E  E  S  R  R  E  E  K  A  R  R  R  Q  Q  E  E  A  R  R  R  E  E  E  E  A  A  K  R  Q  H  E  E  E  A  E  R  E  A  E  E  A  R  R  I  E  E  E  E  A  Q  R  E  A  E  E  A  R  R  I  Q  Q  E  E  E  A  E  R  A  R  R  R  E  E  E  A  E  T  R  R  K  E  E  E  E  E  E  S  R  R  Q  E  E  E  S  R  R  S  E  E  E  A  A  R  E  A  E  R  E  R  Q  E  E  A  E  R  Q  E  E  A  R  R  R  E  E  E  T  E  E  R  H  Q  Q  E  E  T  E  E  E  E  P  G  Q  P  E  M  N  G  Y  S  S  N  *  P  M  S  V  L  C  N  *  C  T  Q  Q  V  L  R  S  *  I  V  S  T  F  L  Y  N  L  M  C  V  Y  V  F  S  F  T  F  A  V  I  F  M  S  L  C  N  N  T  E  T  S  F  H  R  S  L  F  P  G  K  S  P  A  M  *  Q  K  V  L  G  C  Y  L  D  E  S  S  S  Y  I  *   </second_frame>
            <third_frame>   K  E  R  Q  S  K  Q  G  E  K  R  K  K  Q  K  K  E  G  R  R  R  K  N  Q  G  E  R  R  K  Q  E  E  G  N  R  R  K  Q  G  G  E  R  R  K  K  Q  Q  K  G  N  M  R  K  K  Q  R  E  R  Q  R  K  Q  E  G  *  R  R  K  K  H  K  E  R  Q  K  K  Q  G  E  Y  N  R  R  K  K  Q  R  E  Q  G  E  E  K  K  K  Q  K  Q  E  G  R  R  R  R  R  K  N  Q  G  D  K  R  R  N  Q  G  G  V  K  K  R  Q  Q  E  R  Q  R  G  K  G  K  R  K  L  K  D  K  K  K  L  G  D  G  R  K  K  Q  K  R  G  I  N  K  K  K  P  R  K  R  S  Q  A  N  L  K  *  T  D  I  P  Q  T  S  L  *  V  C  C  V  T  S  V  L  S  K  F  S  G  A  E  *  S  L  R  F  C  I  I  S  C  V  C  T  S  F  H  L  L  L  L  S  Y  L  *  V  Y  V  I  T  P  K  Q  V  F  I  D  H  F  S  L  A  S  L  Q  Q  C  S  R  R  C  *  D  V  I  W  M  K  A  V  H  T  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29081" stop="29599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREAEQARREEEEAEKRRQEEEESRREEKARRRQQEEARRREEEEAAKRQHEEEAEREAEEARRIEEEEAQREAEEARRIQQEEEAERARRREEEAETRRKEEEEEESRRQEEESRRSEEEAAREAERERQEEAERQEEARRREEETEERHQQEETEEEEPGQPEMNGYSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35216" PGL_stop="33505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35216" e_stop="35170"/>
            <exon e_start="34707" e_stop="33505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="0.979"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="35216" e_stop="35170" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="35169" i_stop="34708" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="34707" e_stop="33505" e_length="1203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35216" stop="35170"/>
              <exon start="34707" stop="33505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAG : AATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATGTCCTCCACGTCATCTTCAAACGGTCATCAAGAATGGAGTGGGAGACCCAGTGATGCCAATGGTGCATCATTAGCTGCAGGTCTTGGTCTTGGACTACCGTGTGACGCTGGTTCTGGTCTAAAGGAATTAATGTTGGGAACTCCCTCGGTGTTTGGTCCCAAACATCCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAA</gDNA_template>
            <first_frame> T  V  N  C  R  N  V  I  C  F  L  R  S  K  S  R :   I  A  G  E  S  S  H  K  F  C  W  S  C  Y  E  A  S  C  G  G  S  S  S  G  S  K  L  D  W  K  L  *  Q  L  L  *  *  W  K  *  *  Q  Q  C  L  W  K  F  V  C  F  I  N  S  F  G  K  S  A  I  S  S  S  C  F  F  *  Y  I  S  S  H  G  A  *  A  H  S  *  D  G  T  T  F  I  Y  R  T  N  I  S  R  P  S  D  E  S  Q  F  V  N  F  *  T  S  W  S  R  T  E  A  I  C  S  R  T  T  T  S  Y  V  G  N  S  I  T  A  E  G  S  S  D  G  C  S  S  N  Q  L  I  V  L  E  G  H  W  G  Y  V  L  H  V  I  F  K  R  S  S  R  M  E  W  E  T  Q  *  C  Q  W  C  I  I  S  C  R  S  W  S  W  T  T  V  *  R  W  F  W  S  K  G  I  N  V  G  N  S  L  G  V  W  S  Q  T  S  H  S  *  P  P  W  I  R  N  G  S  *  C  R  S  I  A  W  I  I  C  P  F  N  I  H  G  *  Q  S  *  H  G  D  F  S  W  I  I  W  *  C  R  F  Q  W  E  R  L  G  K  K  F  M  I  S  *  S  Q  V  *  F  I  L  Y  R  T  M  N  F  T  *  C  S  K  K  H  I  G  K  L  S  A  P  K  I  *  A  *  D  G  R  R  K  E  G  S  W  T  L  L  R  L  F  Y  C  L  L  C  V  G  K  V  E  R  F  F  F  C  C  T  V  E  V  E  C  I  A  V  L  K  L  L  C  F  L  L  Q  M  K  L  L  M  C  L  V  Y  N  L  L  *  A  Y  L  T  K  R  G  S  S  S  G  N  F  Y  Q  M  V  S  L  F  Q  T  V  Q  I  F  I  K  F  V  *  F  R  C  I  T  N  A  A  V  L  N  S  L  S   </first_frame>
            <second_frame>  P  S  T  A  V  M  S  F  A  S  S  V  Q  N  R   : E  L  R  E  N  P  V  T  N  S  A  G  A  A  T  K  Q  V  V  E  E  A  A  V  V  A  S  L  T  G  N  C  S  S  S  C  S  N  G  S  S  S  S  N  V  F  G  S  L  F  A  S  S  T  A  S  G  S  L  P  S  Q  A  P  V  F  S  D  I  F  R  A  M  A  P  E  H  T  L  E  M  A  P  P  S  S  T  E  P  I  S  L  G  L  A  M  S  H  S  S  S  I  F  R  P  A  G  Q  E  R  R  Q  Y  A  P  A  P  Q  P  A  M  S  A  T  A  L  L  Q  K  A  A  Q  M  G  A  A  A  T  S  S  S  F  L  R  G  I  G  V  M  S  S  T  S  S  S  N  G  H  Q  E  W  S  G  R  P  S  D  A  N  G  A  S  L  A  A  G  L  G  L  G  L  P  C  D  A  G  S  G  L  K  E  L  M  L  G  T  P  S  V  F  G  P  K  H  P  T  L  D  L  L  G  L  G  M  A  A  S  V  G  P  S  P  G  L  S  A  L  L  T  S  M  G  S  N  L  D  M  V  T  S  A  G  S  F  G  S  A  D  F  S  G  K  D  L  G  R  N  S  *  Y  L  R  V  R  F  N  L  F  C  I  G  Q  *  I  S  L  D  A  A  K  N  I  L  A  S  S  Q  P  Q  R  F  E  H  R  M  A  G  G  K  K  A  V  G  H  F  *  D  C  S  T  V  S  F  V  *  E  K  *  K  G  F  F  S  A  V  Q  *  K  L  N  V  *  L  Y  *  N  S  S  A  F  C  Y  R  *  S  C  *  C  V  *  Y  I  I  C  Y  K  H  I  *  P  R  E  A  H  L  V  G  I  F  I  K  W  Y  L  Y  F  R  Q  C  K  F  L  *  N  L  Y  N  S  D  A  *  L  M  Q  Q  C  *  T  L  *  A  </second_frame>
            <third_frame>   R  Q  L  P  *  C  H  L  L  P  P  F  K  I  E  :  N  C  G  R  I  Q  S  Q  I  L  L  E  L  L  R  S  K  L  W  R  K  Q  Q  W  *  Q  A  *  L  E  T  V  A  A  L  V  V  M  E  V  V  A  A  M  S  L  E  V  C  L  L  H  Q  Q  L  R  E  V  C  H  L  K  L  L  F  F  L  I  Y  F  E  P  W  R  L  S  T  L  L  R  W  H  H  L  H  L  Q  N  Q  Y  L  S  A  *  R  *  V  T  V  R  Q  F  L  D  Q  L  V  K  N  G  G  N  M  L  P  H  H  N  Q  L  C  R  Q  Q  H  Y  C  R  R  Q  L  R  W  V  Q  Q  Q  P  A  H  R  S  *  G  A  L  G  L  C  P  P  R  H  L  Q  T  V  I  K  N  G  V  G  D  P  V  M  P  M  V  H  H  *  L  Q  V  L  V  L  D  Y  R  V  T  L  V  L  V  *  R  N  *  C  W  E  L  P  R  C  L  V  P  N  I  P  L  L  T  S  L  D  *  E  W  Q  L  V  S  V  H  R  L  D  Y  L  P  F  *  H  P  W  V  A  I  L  T  W  *  L  Q  L  D  H  L  V  V  Q  I  S  V  G  K  T  W  E  E  I  H  D  I  L  E  S  G  L  I  Y  S  V  *  D  N  E  F  H  L  M  Q  Q  K  T  Y  W  Q  A  L  S  P  K  D  L  S  I  G  W  Q  E  E  R  R  Q  L  D  T  F  K  I  V  L  L  S  P  L  C  R  K  S  R  K  V  F  F  L  L  Y  S  R  S  *  M  Y  S  C  I  K  T  P  L  L  F  V  T  D  E  A  V  N  V  F  S  I  *  F  A  I  S  I  F  N  Q  E  R  L  I  *  W  E  F  L  S  N  G  I  S  I  S  D  S  A  N  F  Y  K  I  C  I  I  Q  M  H  N  *  C  S  S  V  K  L  F  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35215" stop="35170"/>
                    <exon start="34707" stop="33932"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTAVMSFASSVQNRELRENPVTNSAGAATKQVVEEAAVVASLTGNCSSSCSNGSSSSNVFGSLFASSTASGSLPSQAPVFSDIFRAMAPEHTLEMAPPSSTEPISLGLAMSHSSSIFRPAGQERRQYAPAPQPAMSATALLQKAAQMGAAATSSSFLRGIGVMSSTSSSNGHQEWSGRPSDANGASLAAGLGLGLPCDAGSGLKELMLGTPSVFGPKHPTLDLLGLGMAASVGPSPGLSALLTSMGSNLDMVTSAGSFGSADFSGKDLGRNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36616" PGL_stop="35813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36616" e_stop="36015"/>
            <exon e_start="35956" e_stop="35813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="36616" e_stop="36015" e_length="602"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36014" i_stop="35957" i_length="58"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="35956" e_stop="35813" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36616" stop="36015"/>
              <exon start="35956" stop="35813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTTTTTTTGCGGTCTCTGTTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCCAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAG : ATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTGGCGACGAACAGATTTGTTTGTGAAATTTGTAGTAAAGGGTTTCAAAGAGACCAGAATTTGCAGCTTC</gDNA_template>
            <first_frame> R  L  F  L  R  S  L  F  S  H  *  I  S  S  L  S  L  Y  *  F  P  S  R  R  L  A  L  S  Q  L  L  L  I  F  I  E  F  F  F  I  T  F  T  Y  K  Q  T  H  L  L  E  L  S  D  F  P  G  R  K  F  T  P  V  I  D  F  L  V  I  L  E  S  G  F  F  S  *  F  L  C  Y  G  D  L  L  F  *  L  G  L  I  K  T  G  S  W  V  Y  E  R  K  K  N  E  K  A  R  L  T  G  R  Y  G  E  K  R  E  S  I  D  S  P  K  K  R  L  I  S  K  R  F  F  *  H  K  C  S  K  D  L  L  F  *  A  T  P  P  P  Q  K  K  K  K  K  H  A  G  R  P  R  *  L  I  R  H  E  R  F  Y  R  L  R  *  S  K  R  F  V  F  R  *  S  S  S  S  S  E  R  I  S  Q  E  E  T  E  S  S  W  D  A  R :   F  D  F  L  F  L  V  A  L  I  R  S  R  C  R  G  Y  C  F  V  T  N  N  F  A  G  D  E  Q  I  C  L  *  N  L  *  *  R  V  S  K  R  P  E  F  A  A   </first_frame>
            <second_frame>  D  F  F  C  G  L  C  F  H  I  K  F  P  L  F  L  S  I  D  F  R  A  A  D  L  R  C  H  N  C  F  S  F  S  S  S  F  S  S  L  L  L  L  I  S  K  P  I  Y  S  N  L  A  T  F  P  A  E  S  S  R  R  *  L  T  F  W  *  F  W  N  L  G  F  S  A  N  F  Y  V  M  G  I  C  Y  F  S  L  V  *  S  K  L  V  V  G  C  M  K  E  R  K  T  K  K  Q  D  *  L  V  D  T  A  K  R  E  K  V  L  T  P  P  R  K  D  *  Y  Q  K  G  F  F  N  I  N  V  L  K  I  C  F  F  E  Q  P  P  P  P  K  K  K  K  K  N  M  P  A  D  P  D  N  S  S  A  M  N  D  S  T  G  S  G  E  A  S  V  S  S  S  G  N  Q  V  V  P  L  K  E  S  A  K  K  K  R  N  L  P  G  M  P   : D  L  I  F  C  F  W  L  L  *  L  D  P  D  A  E  V  I  A  L  S  P  T  T  L  L  A  T  N  R  F  V  C  E  I  C  S  K  G  F  Q  R  D  Q  N  L  Q  L  </second_frame>
            <third_frame>   T  F  F  A  V  S  V  F  T  L  N  F  L  S  F  S  L  L  I  S  E  P  P  T  C  V  V  T  T  A  S  H  F  H  R  V  F  L  H  Y  F  Y  L  *  A  N  P  F  T  R  T  *  R  L  S  R  Q  K  V  H  A  G  D  *  L  S  G  D  F  G  I  W  V  F  Q  L  I  S  M  L  W  G  F  A  I  L  A  W  F  D  Q  N  W  *  L  G  V  *  K  K  E  K  R  K  S  K  I  D  W  *  I  R  R  K  E  R  K  Y  *  L  P  Q  E  K  I  D  I  K  K  V  F  L  T  *  M  F  *  R  F  A  F  L  S  N  P  P  P  P  K  K  K  K  K  T  C  R  P  T  Q  I  T  H  P  P  *  T  I  L  Q  A  Q  V  K  Q  A  F  R  L  Q  V  I  K  *  F  L  *  K  N  Q  P  R  R  N  G  I  F  L  G  C  Q  :  I  *  F  S  V  F  G  C  F  D  *  I  P  M  Q  R  L  L  L  C  H  Q  Q  L  C  W  R  R  T  D  L  F  V  K  F  V  V  K  G  F  K  E  T  R  I  C  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36237" stop="36015"/>
                    <exon start="35956" stop="35928"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQKGFFNINVLKICFFEQPPPPKKKKKNMPADPDNSSAMNDSTGSGEASVSSSGNQVVPLKESAKKKRNLPGMPDLIFCFWLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 11 chains have been computed
$ 
$ memory statistics:
$ 14456 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2065 bytes was the average size of a spliced alignment
$ 12808 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1829 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:34:22
-->
