<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:32:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543751" ref_strand="+" ref_description="SGN-E543751 [TUS-65-L17](-)">
      <seq>gctttttgtggtcatcatgtttcacatttggatagacaagtaaggccaattgggtgttttggttgagttctcttgtgggaggattgtcaatatctatcaagtggttcataacaagtgaaggaggctgagctcttggatgaagctatttggaggatctgactagtggctgttgggcgaggtcaactctttcagcaattgatgccccgctctgctgcatgacttccataaccgccagagatcaaagtgtattgtaaccattgaagccgcatgtgttcttggtcgttgctgctggaattctcaacattgatgagggggtacgagaccaagcatccatgttaagacgtgtggtaagagggcttctgccattatattggtctaatattggcttgtttttgggaatttagcttcctgtctgtaataagcttggtaggattatgcttatgttggagatgaggttatggttttctgatagttgtgcgaacttaagctgtcatactccgtgagattaacccctcgttaccagaacatagattatgtaataagaagtctttagcctttttcactattgattgtaatcgagaattatctcaaggatgttaagtcagtgtggaactatttactgcgattatctggctctctagagtgatatagatgctgttgaattataagattttattaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="7178" stop="5211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="6804" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="83" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6803" i_stop="6677" i_length="127">
            <donor d_prob="0.455" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6676" g_stop="6623" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="137" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6622" i_stop="6050" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6049" g_stop="5505" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="683" r_length="546" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5504" i_stop="5299" i_length="206">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5298" g_stop="5293" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="689" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E543751" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="6804"/>
          <exon e_start="6676" e_stop="6623"/>
          <exon e_start="6049" e_stop="5505"/>
          <exon e_start="5298" e_stop="5293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCATGTTTCACATTTGGATAGACAAGTAATGGCAATTGGGTGGTTTTGGTTGAGTTCTCTTGTGGGAGGAGTAAGTATATGAGCGATTTGTATACTTTAAACGTTCCTTCTTCAAATTTTAGAACCCGGTCATGTTCATTTGTCGCACCTGGTTATTGTACTTCTTTTGTGGGTATTGAACAATCTTTGTGCTGCAGTTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGAGTAAGGATCTTGATCTTTTTCTCATTATTTCTACTAGATGATAAAATTATTAGTATCAGAGAGAGATATAGTAAAAAGTTTGCCTAAGTTTTTAGTGTTCAGAAGAATTTTGTTGAAGACCAATTGAGAAACTGGATCTTTCAGAGGGTGCACCGTGTAACATACTCTATGTTCCCCTCGGAATGTTAGTATAACTATTTAAAGTTTTGACAAAAAATTGATTGCGTTGGAATGTATAGCGCGATTGAGTGCACTTTGAAATTGATAAATGCATTGTTTGTGAAGTATGTGTGTGTGTGGTGGTACGAGTGATGGATTGAACGGTGCCAAAGAATTACTAATTTTTTTATGGTGGATGTAATCTGGTTTAGATTTCATTATTTCTTGGATAACTTCTGAAAAGGGTGAATAAATTGTGCGATTTCAATAAGATCTTCAACTGTGGACTAGAATTTTAGTCATTTGGTCTCTTATTTTAATTTCTTAAATATTATTTGACACACCAAATAATTAATGCAACAGAAGTAGGTTGTGTAAGAAACATAATATCTTATATCGTGTTTTTATTGGCAGTGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATG-CCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATTTTCACCGTCTTCACTGCTGTCCTACTCGTTTGCAACTTAATTCAGATTTACTGGTGTCGTATAGTATTTCAATAAAAACTTTTTAAGCTTGATTCGTCGTCTTTCAAACAGTTTTTGAAAGTTGAAGTTTGGCTTTTGGGGTTGAGGTGAGGGGCATTAGTTGAAACATGTTATGTATGTGAATAACAAAAACTTTGTAGATTTCACTGCAGAGAAAA</genome_strand>
        <mrna_strand>GTCATCATGTTTCACATTTGGATAGACAAGTAAGGCCAATTGGGT-GTTTTGGTTGAGTTCTCTTGTGGGAGGA...............................................................................................................................TTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATGCCCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATTAAAAAA..............................................................................................................................................................................................................AGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543752" ref_strand="+" ref_description="SGN-E543752 [TUS-65-L17]">
      <seq>gggtttccctgaaattggttgccgatgttaatgtatttgcgttgtactctatttcgaatagtagagtttgggtttttgctgtgaaacacctggggggtgaggagctgaaattaatgaagtatgccgtgattgattgttctctgcccgtgttttccattagtgtatcttttggggtcctgattttgggggaagataatggagtcagggttttccccctgcggccattggtcaaaggaagagttaagaaagagagggctaccaataagaaaagtttgaatggtgggttagaaaaagataaaatggagataaaaaagctacctttacgaaatgggatgatacatggcatgaatgctgagattagtgctgctgatggtagtaaattgatggaactgaagtttacttccaatggtatggtcgagaaccgcactgaatcagcaaagttaaggtctgtgagactcagacaagattccagagagggtattgcaaacttcgtggcattcaagaacaaggatgataattttgagtcgatcaagataccggttaagtcagcaaaagctattggcattcaggccttatcttcaaccangtttctgatcttggactctgaaggaaatcttcacctcttgttcccttgcacttctggtcatggatcagagactccttatagcatgaaacagttaactcacaacatgaaagttcgaaagctcactgttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="14537" stop="9235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14237" g_stop="13803" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13802" i_stop="9817" i_length="3986">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9816" g_stop="9535" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="717" r_length="282" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E543752" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14237" e_stop="13803"/>
          <exon e_start="9816" e_stop="9535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAGGTGCTGGAATACTTTCTGACTTTGCTGTCCATCCATAGCTATTTTAGAAGCTTGGCATTGAGAATCCAAGTTTCTTTTTTTTTTTGAACTGTTCCATTGCTTTTATATTGCAATTATGTTTCTGGTGGTAAATGTAGTACTGTTAATAGCAAAAAGATATGAATCACTCGATCCTGAATATGGGATCTGTACATGTATCTATTATGTTACTCACATTTATACTGTGTTTGCTTCAGGATGTCTATGTATGCTGCATAATAACAAAACTCTGGTTGGATTTTCGGGATCAGTTTCTAAGTAGAAATAACTCCTTAGAAAGATCGAGTAAAAGGATAGGCATTAGTTATTTATCTGGCAACTTTAGCTACCTCCCCTCACGGTAGGGAAGACCCATAACTCCACAAATGGTGGGGTTTGAGATGCTAGATTGTCTCCAAAACAGTGTGTTCTAGTATGTTAAGTAAATGACATCCCATTAGAAAAGTCTGATACCAACAATGTCGTGAGTGATCATCTTTAAGATTTAAGATTCATGTCCTAGTCTTGTACAAATTTGGATGTTAAGATGGCTGTGCAGATATACTGAAGTTGTCAAAATTAGAGATTATCACATCTGTTTGAGAGCACAAATAACAACCGTACATGATAAAATAAGAGGTTATCTAAAATAGTTTAGTTATGTTGTACGGGATCTCTATATGCACATAGTTGCAATAATATTGTGATTAGAAATGATAAAAGAGGACAAAGTAGATCTAAGACCAAATGGAGAAAGGTTGGCTTGATATCCAATGGATCGATTGAAACAGATTTAGCTAAGACATAAAGATAAATACATATATCTTTATGAAAGTATACCAACTAATTTTTATTTAGTTGCTATACTTGCATCATGCCAGGTGTTCGTGAATGACTCATCTTAATCTAGGTACTTGTATATCCTTTTATGGATAAGAGTTAGGTTGAGACGATGCCTAGATTTAGAAAATTTTTAATTTGTATTAAAATGAAATGAACCTGAACAGAGCAGAATGGATGAAGTGGATTCTTATCGTTAAATGTCTTCTCAACAATCCATTTTTCAGGAGTAACTTGTCTTCTGCAAATAACAAGTATTGATCATTTTCTGGTTTTCTTGGCTTCCTGATATATGTTTGAAATCAATAATGTATAAAGCTAATTTTCTCTTTTGTATCTACCACGTCTCTTGATGCCATCACTACTTACTTTATAGGTGACAGAATATTTTTTTTTTATAGCAGACCCCAAATAATTTGGGATTGAGAGGCAATTTATTGGCAGTCATAAATGTGGCAGTATTTTGTTTGGCTTATCAAAGATATGGCTTTAATGTATGTCGTGATTTCTTTATACGTGATACACTTCCTCCCTCTTCTTCCATTGTTGATATCTCTATTTTTCCCACTCTCCAAGATATAAGGTTATTGTCTTGAACTCTAAGTTCATCCTTGGTCAGAATTAAGAAAGGTATCATTGGAAGTGCAGAATCTAAATGAAGTAGAGCTTTCGTGGAAACAATTTGATTGGGTTATAGTCTTGGATTAGCATATTTATGTTGTGTATGATGGTGATGGTTTAATCTGATTTTACTGTTTACCTATAGGCTGCATGAGCACTAAGTTGCATAGACTTTTAATGTTATATATTTTTGGAAGTGATGAAAGATAGAAGTAGTTATTTTGAAAGATGTTAAATCGACCTTGAGATAATGTGAACTAGTGTTAGTTATATCTGCTTCAATTGTAGGAATTACTATGCAGAAAACTCCATTGAATAATATTACTCGTATTCTCTTAGAAGGATGAAAAAAGAGGGTAGGTCAAGTATTTTGGGTGGCGAGAGTTAATATGTTTTAAAAAATCAACCAACAAGCCTAGCCAGTTTGCATATTTGCTCTTATCCCCCATCCTATGTCAGATCCCTCTTAAAGAAAAATACTACAACACAAATATTACACTTGCGTTTAAAGACATAGAATGCGGTGTGAACTAGTTAAGCTAATGACTAAATTGCAAACTTTAGCACTAATTCCGTTCTTTGAGTTTTGGCTCAGAACACTTGGCACTCCATTTCTTGTCCTTTTTTCCTCTTTACTCTGTATCTTTTGCCTTCTCAAAGATATGAATGTTCGACAAGGCTTCTAGGAGATTGCTATATTTATTTCCAGGAAAAGTGTCCTTAGTTGCTACTCATTTTCCTGTCTGGCTATTTTGGGGTGGTTTTTGTCTTTAATCTTAGGAATAAGGCAGAAGTACCACTCTGAACTTTACCCGAAATCCCAACGACACTCTTTAGCTTTACGAGGGTCCTAATATACCCCCCTTTGAACTCATTTTTTAATGAATTTTTGTGTTCCTTTTGTACACGTGTCACCATTGTCCAGGTAAATGACGTGCGGTGTATACTTGTGCTTTTATTACACAAAAAGGGTCCCACTCCATTACTTTACCAAAAACCTTTTAATTTTCCAATAACAAATAAGTTCAAATCTCTCACTTTTTTGAGCCTCGACCTAAACCATGATTTTCATTCTGGTACTTGATATGTAGGTTCCATTTTGGTATTTAGTGTTTGATTTCTTCAGGAGGAGAAAATGAGGTATTGATTTCATTAGGAGGAGAAAAAAATGAGGTATTGATTTTATCAGGAGGAGAAAAAATGAAACTTCTAAAATCAGGACTAATAATTTGACATGAAAGAGGGGTAAAGAAAAGGAATTTACACAAAATAAGCTTACCTTTTTTATTCAAGGAGAAATTTCAAGAAGTGTATTAATTTGGAGCCACCCTAATGGAGAATGAAGAAAGGGTAAATTGAAGATGAAAAGAATCAGCTTTTGAAGAAAGAGTTTTCTTTTTCAACTTTCGCAATTACACTTCGCCAATTCCTATTGATTAGAGCTATTGTACTAATGTTCCCATGCGCCTCAGATTAGTGTATTCACGCGTGGTTCCATGTCAGCACAAAAGGAGCACAAAATACCTAAAAAATGAGTTTTTTTAGGGGTGGGGGTGGGGTCGTGGGGAATAGGGACCCTTGTAAGGTTTAGGCAGTGTTGTAAAAGGCGCTCGCCATAGCGCCTTTGGCAAATGGCGAGGCGAGGCGAGGCGAGGCTGTGTCGCCATTATCCACTGAGGCGAGGCGACCTCAAATAGGCGACCCGAGGCGACCCAATGGCGACGTAAATGGCGTCGCCATTTTGATCTTTTTTTTAAAAAAAAGTTTTAACTTAATAATATTAGGTTTTTTTTTCTATTCTCAAACTTTCATTAGACTTTCGTGTATTCCTCTTCTTCTCTTCCTCGAGTCGCTGCTGCTTCTTCTCTTCCTCAGTCGCTACTCTCTTCTTCTCTTCCTCAGTCGCTGCTCTCTTCTTCGTCTCTTTTCCTCGAGTTGCTGCTCCATTCGTCTCTTTCTCTTTCACTCTTCACTGCTCCTTGCCTTCACTACTCTTTTTTTCCCTCTGTTTTCTTCACTCTCTGTTTTGTCCCGGATTACTGTAAAATGCTTTTTGCTTTCACTGTGCTGTGACTGTTGTCCATTATTTTTTTGAAAAAAAATTAATTCTTCTATAGTAATTATTATAGTATTTGTAATATATGTAATTGCTATTGAAATTTTGAATATTATATGTGCAATTAAATGTTGTTAATTTTTTGTATTAATTGGTGCCTCGATTAAAAAAGGCGAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTCTCGCCGTCCAAAACACTGGTTTTAGGTGTGTCGCTCGAATTTAGGGTATAGTTTGGGGTGGTACTTGTGCCTTGTTCCTTAATCTTATTACAGTGATACTTTGGTTGTTTTTGCTATTGTAAAAATGTAGTTTGACATCATTTAAGTTTTCTTTGATTTCGCCATCATGTTAAGATCTAGAAGCTCCAATTCTGTTGTTGTTTCCTACAGCTGCTAATTGTGCATTCTAACTTGCAGCAAAGTTAAGGTCTGTGAGACTCAGACAAGATTCCAGAGAGGGTATTGCAAACTTCGTGGCATTCAAGAACAAGGATGATAATTTTGAGTCGATCAAGATACCGGTTAAGTCAGCAAAAGCTATTGGCATTCAGGCCTTATCTTCAACCAGGTTTCTGATCTTGGACTCTGAAGGAAATCTTCACCTCTTGTTCCCTGCAACTTCTGTTCATGGATCAGAGACTCCTTATAGCATGAAACAGTTAACTCACAACATGAAAGTTCGAAAGCTCACTGTTCTTC</genome_strand>
        <mrna_strand>GGGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTTAAGGTCTGTGAGACTCAGACAAGATTCCAGAGAGGGTATTGCAAACTTCGTGGCATTCAAGAACAAGGATGATAATTTTGAGTCGATCAAGATACCGGTTAAGTCAGCAAAAGCTATTGGCATTCAGGCCTTATCTTCAACCANGTTTCTGATCTTGGACTCTGAAGGAAATCTTCACCTCTTGTTCCCTTGCACTTCTGGTCATGGATCAGAGACTCCTTATAGCATGAAACAGTTAACTCACAACATGAAAGTTCGAAAGCTCACTGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306346" ref_strand="+" ref_description="SGN-E306346 [cLEX-13-B5]">
      <seq>ggtttccctgaaattggttgccgatgttaatgtatttgcgttgtactctatttcgaatagtagagtttgggtttttgctgtgaaacacctggggggtgaggagctgaaattaatgaagtatgccgtgattgattgttctctgcccgtgttttccattagtgtatcttttggggtcctgattttgggggaagataatggagtcagggttttccccctgcggccattggtcaaaggaagagttaagaaagagagggctaccaataagaaaagtttgaatggtgggttagaaaaagataaaatggagataaaaaagctacctttacgaaatgggatgatacatggcatgaatgctgagattagtgctgctgatggtagtaaattgatggaactgaagtttacttccaatggtatggtcgagaaccgcactgaatcagcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="14536" stop="13503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14236" g_stop="13803" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13802" i_stop="13654" i_length="149">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.131" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13653" g_stop="13649" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="439" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E306346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14236" e_stop="13803"/>
          <exon e_start="13653" e_stop="13649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAGGTGCTGGAATACTTTCTGACTTTGCTGTCCATCCATAGCTATTTTAGAAGCTTGGCATTGAGAATCCAAGTTTCTTTTTTTTTTTGAACTGTTCCATTGCTTTTATATTGCAATTATGTTTCTGGTGGTAAATGTAGTACTGTTAATAGCAAAA</genome_strand>
        <mrna_strand>GGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAG.....................................................................................................................................................CAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250396" ref_strand="+" ref_description="SGN-E250396 [cLEG-6-B1]">
      <seq>gagggttgcggtgaggtcttggattcaagcccttcagagcatagtggtctcaatttcgatctctttggatatgaaatctcctttgtaagggagaactctatggttcaaatagttatcgaacaaatacgtccttgaattcattaccaaataattttttcatttttatctttttctggactttataataaagatggaacgtatcacatagggatacaattcagataataggcatacatacaaagtactaacaaaacagttaaacttttacccaacaaaacgacaaataacataccaaaaattgcaaaataaaaggacgttgatgttactttttttttttaattctagagcacgtagttattgattatttcagaacgaccccaacaaaagttgtgatttgcacatcaacacccccacttaattagtgtaatttttcagtgcggccccttcctcacaagctttagcttcaagtgttggctccaccgtcggcgacggaggaaccgccgtacacaacaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="+" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="18756" stop="19870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19056" g_stop="19570" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="+" ref_id="SGN-E250396" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19056" e_stop="19570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTTGCGGTGAGGTCTTGGATTCAAGCCCTTCAGAGCATAGTGGTCTCAATTTCGATCTCTTTGGATATGAAATCTCCTTTGTAAGGGAGAACTCTATGGTTCAAATAGTTATCGAACAAATACGTCCTTGAATTCATTACCAAATAATTTTTTCATTTTTATCTTTTTCTGGACTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTAC-TTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAGGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTC</genome_strand>
        <mrna_strand>GAGGGTTGCGGTGAGGTCTTGGATTCAAGCCCTTCAGAGCATAGTGGTCTCAATTTCGATCTCTTTGGATATGAAATCTCCTTTGTAAGGGAGAACTCTATGGTTCAAATAGTTATCGAACAAATACGTCCTTGAATTCATTACCAAATAATTTTTTCATTTTTATCTTTTTCTGGACTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTACTTTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAAGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744749" ref_strand="+" ref_description="SGN-E744749 [GI|8977960]">
      <seq>tttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttattataaagtccagaaaaagataaaaatgaaaaaattatttggtaatgaattcaaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20718" stop="18884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20418" g_stop="20162" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="379" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19183" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="1067" r_length="688" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1068" polyA_stop="1083"/>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E744749" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1067</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20418" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGAC</genome_strand>
        <mrna_strand>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398044" ref_strand="+" ref_description="SGN-E398044 [TUS-38-L17](-)">
      <seq>cagatttaaagaagagaattggaataacagcaggattctgcattttgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttttacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaattcattttccctttcaagttattttacactttttacttgaaggggatccccggtctgccttttgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttttgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttattataaagtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20160" stop="18910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19860" g_stop="19210" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E398044" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19860" e_stop="19210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAA</genome_strand>
        <mrna_strand>CAGATTTAAAGAAGAGAATTGGAATAACAGCAGGATTCTGCATTTTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTTTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAATTCATTTTCCCTTTCAAGTTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCTTTTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTTTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393347" ref_strand="+" ref_description="SGN-E393347 [TUS-38-K17](-)">
      <seq>agagaagaaaggagatcgctttgaagctgtttacagcttctacttcggcgattacggtcatatcgccgtttcagggagcgtacttaacctaggaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagttattttacactttttacttgaaggggatccccggtttcccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacccctgaagttaaagcttgtgaggaaggggccgcactgaaaaattccactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttttgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattttttgaattgtatccctatgtgatacgttccatctttattataaagtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20099" stop="18910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19799" g_stop="19210" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E393347" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19799" e_stop="19210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCG-TTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAA</genome_strand>
        <mrna_strand>AGAGAAGAAAGGAGATCGCTTTGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTTCAGGGAGCGTACTTAACCTAGGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGTTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTTTCCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACCCCTGAAGTTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTCCACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTTTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTTTTTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747351" ref_strand="+" ref_description="SGN-E747351 [GI|47104611]">
      <seq>caacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttattataaagtccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20726" stop="18915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20426" g_stop="20162" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="387" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19215" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="1043" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E747351" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1043</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20426" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAA</genome_strand>
        <mrna_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284224" ref_strand="+" ref_description="SGN-E284224 [cLER-16-G20]">
      <seq>tttttttttttttttataataaagatggaacgtatcacatagggatacaattcagataataggcatacatacaaagtactaacaaaacagttaaacttttacccaacaaaacgacaaataacataccaaaaattgcaaaataaaaggacgttgatgttacttttttttttaattctagagcacgtagttattgattatttcagaacgaccccaacaaaagttgtgatttgcacatcaacacccccacttaattagtgtaatttttcagtgcggccccttcctcacaagctttagcttcaggtgttggctccaccgtcggcgacggaggaaccgccgtacacaacaattcagatggcagaccggggatccccttcaagtaaaaagtgtaaaatagcttgaaagggaaaatgagttgctgcaatttcacttgaccggaaacccctgcaaatatgccggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="+" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="18934" stop="19979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19222" g_stop="19679" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="+" ref_id="SGN-E284224" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19222" e_stop="19679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTGGACTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTACTTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAGGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTCAGATGGCAGACCGGGGATCCCCTTCAAGTAAAAAGTGTAAAATAGCTTGAAAGGGAAAATGAGTTGCTGCAATTTCACTTGACCGGAAACCCCTGCAAATATGCCGGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTACTTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAGGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTCAGATGGCAGACCGGGGATCCCCTTCAAGTAAAAAGTGTAAAATAGCTTGAAAGGGAAAATGAGTTGCTGCAATTTCACTTGACCGGAAACCCCTGCAAATATGCCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744575" ref_strand="+" ref_description="SGN-E744575 [GI|924631]">
      <seq>caatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20582" stop="18934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20282" g_stop="20162" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="243" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19232" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="882" r_length="639" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E744575" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20282" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGT</genome_strand>
        <mrna_strand>CAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576062" ref_strand="+" ref_description="SGN-E576062 [59221]">
      <seq>gctatatactgcagacctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacacctgaagctaaagcttgtgaggatggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaataatcaataattatgagctgtagaatttaaaaaaaagtaatatcattgtccttttattttgcaatttttggtatgttatttgctgtttgttggttaacctattttgtagtactttgtatgtatgccctattttctgaattgcatccctattgtgataaacaaaggggggggcccgggtacccaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20171" stop="18954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19871" g_stop="19270" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E576062" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19871" e_stop="19270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATG-CCTATTATCTGAATT</genome_strand>
        <mrna_strand>GCTATATACTGCAGACCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACACCTGAAGCTAAAGCTTGTGAGGATGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTG-AATAATCAATAATTATGAGCTGTAGAATT-TAAAAAAAAGTAATATCATTGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTG-CTGTTTGTT--G-----GTTAACCTATTTTG-TAGTACTTTGTATGTATGCCCTATTTTCTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734966" ref_strand="+" ref_description="SGN-E734966 [LB14AC09]">
      <seq>gcatgactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20131" stop="18972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19831" g_stop="19270" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="574"/>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E734966" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19831" e_stop="19270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATT</genome_strand>
        <mrna_strand>GCATGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343223" ref_strand="+" ref_description="SGN-E343223 [cTOF-17-L12]">
      <seq>tgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaatacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtacatcaacgtccttttattttgcaatttttggtatgttatttgtcngtttgttgggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20372" stop="19018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20072" g_stop="19952" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19870" g_stop="19318" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="672" r_length="551" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="684"/>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E343223" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20072" e_stop="19952"/>
          <exon e_start="19870" e_stop="19318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAA</genome_strand>
        <mrna_strand>TGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAA-TACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGT-ACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCNGTTTGTTGGGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747122" ref_strand="+" ref_description="SGN-E747122 [GI|14423350]">
      <seq>gatcaacaacaacctcattgaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatataccgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctataattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttcggaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20734" stop="19045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20435" g_stop="20162" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="396" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19348" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="919" r_length="523" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="922" polyA_stop="950"/>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E747122" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20435" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTG</genome_strand>
        <mrna_strand>GATCAACAACAACCTCATTGAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACCGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTATAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727674" ref_strand="+" ref_description="SGN-E727674 [LA15BF03]">
      <seq>cgctaaaacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaatatcaataactacgtgctctagaattaaaaaaaaagtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20728" stop="19075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20431" g_stop="20162" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="392" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19375" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="886" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E727674" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20431" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACAT</genome_strand>
        <mrna_strand>CGCTAAAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAAT-ATCAATAACTACGTGCTCTAGAATT-AAAAAAAAAGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730373" ref_strand="+" ref_description="SGN-E730373 [LA23DG01]">
      <seq>acgttcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctanagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctaaaataaaaaaaaaaagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20721" stop="19077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20425" g_stop="20162" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="386" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19377" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="880" r_length="494" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E730373" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20425" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAAC</genome_strand>
        <mrna_strand>ACGTTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTANAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAAAATAAAAAAAAAAAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605918" ref_strand="+" ref_description="SGN-E605918 [21850]">
      <seq>gctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacacctgaagctaaagcttgtgaggatggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaataatcaataattatgagctgtagaatttaaaaaaaagtaatatcattgtccttttatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20074" stop="19059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19774" g_stop="19382" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="428"/>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E605918" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19774" e_stop="19382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAA</genome_strand>
        <mrna_strand>GCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACACCTGAAGCTAAAGCTTGTGAGGATGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTG-AATAATCAATAATTATGAGCTGTAGAATTTAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699977" ref_strand="+" ref_description="SGN-E699977 [FA11DA11]">
      <seq>ctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20722" stop="19082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20422" g_stop="20162" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="383" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19383" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="871" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E699977" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20422" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAA</genome_strand>
        <mrna_strand>CTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708863" ref_strand="+" ref_description="SGN-E708863 [FA36DH09]">
      <seq>catttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20720" stop="19084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20420" g_stop="20162" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="381" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19384" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="868" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E708863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20420" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAA</genome_strand>
        <mrna_strand>CATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699861" ref_strand="+" ref_description="SGN-E699861 [FA11BF11]">
      <seq>ctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20722" stop="19097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20422" g_stop="20162" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="383" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19396" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="858" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E699861" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20422" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAG</genome_strand>
        <mrna_strand>CTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557692" ref_strand="+" ref_description="SGN-E557692 [16530]">
      <seq>cgtcacggcggatccggcatatttgctggggggtttcncggtacaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacacctgaagctaaagcttgtgaggatggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaataatcaataattatgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="19991" stop="19100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19691" g_stop="19399" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E557692" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19691" e_stop="19399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCACCGGTGGATCCGGCATATTTGC--AGGGGTTTC-CGGT-CAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTC</genome_strand>
        <mrna_strand>CGTCA-CGGCGGATCCGGCATATTTGCTGGGGGGTTTCNCGGTACAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACACCTGAAGCTAAAGCTTGTGAGGATGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTG-AATAATCAATAATTATGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708817" ref_strand="+" ref_description="SGN-E708817 [FA36DD08]">
      <seq>caaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgcccacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttctgttggggtcgttctgaaataatcaataactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20686" stop="19105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20386" g_stop="20162" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="347" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19405" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="813" r_length="466" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E708817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20386" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTAC</genome_strand>
        <mrna_strand>CAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCCACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTCTGTTGGGGTCGTTCTGAAATAATCAATAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603183" ref_strand="+" ref_description="SGN-E603183 [56267]">
      <seq>gttcatttcttcttcagcaatggccactgtttcctcagcctctgctgctcttagagctatttcttcttcctcatacaagctaccctctgccttccaaactacttctctttctcaaaagatccaatcttttaaactccctaaccctctcatttctcaaactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagaacagctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagctcaatgaacgtgaccgtggaagccctgcttatcttcgattgagccaaaagaatgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagacctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacgactgaagctaaagcttgtgacgatgggggccgcactgaaaaattaccactaattaagtgggggtgttgatgtggcaattacaacttttgttggggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20682" stop="19127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20391" g_stop="20162" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="364" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19427" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="810" r_length="446" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E603183" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20391" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTA------------AAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGA-AGGGGCCGCACTGAAAAATTA-CACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCG</genome_strand>
        <mrna_strand>GTTCATTTCTTCTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAGCTATTTCTTCTTCCTCATACAAGCTACCCTCTGCCTTCCAAACTACTTCTCTTTCTCAAAAGATCCAATCTTTTAAACTCCCTAACCCTCTCATTTCTCAAACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAACAGCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGCTCAATGAACGTGACCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGAATGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGACCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACGACTGAAGCTAAAGCTTGTGACGATGGGGGCCGCACTGAAAAATTACCACTAATTAAGTGGGGGTGTTGATGTGGCAATTACAACTTTTGTTGGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451297" ref_strand="+" ref_description="SGN-E451297 [cSTS-12-G6]">
      <seq>ctaccctctgccttccaaattacttctctttctcaaaagatccaatctttaaaactccctaaccctctcatttctcaaactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagaacagctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagctcaatgaacgtgaccgtggaagccctgcttatcttcgattgagccaaaagaatgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagacctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacacctgaagctaaagcttgtgaagatggggccgcactgaaaaatacactaattaagtgggggtgttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20593" stop="19153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20292" g_stop="20162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="163" r_length="131" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="285" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19453" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="702" r_length="417" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E451297" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20292" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGT</genome_strand>
        <mrna_strand>TCAAAAGATCCAATCTTTAAAACTCCCTAACCCTCTCATTTCTCAAACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAACAGCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGCTCAATGAACGTGACCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGAATGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGACCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACACCTGAAGCTAAAGCTTGTGAAGATGGGGCCGCACTGAAAAA-TACACTAATTAAGTGGGGGTGTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744720" ref_strand="+" ref_description="SGN-E744720 [GI|40643244]">
      <seq>atggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20672" stop="19169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20372" g_stop="20162" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="333" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19469" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="735" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E744720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20372" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAA</genome_strand>
        <mrna_strand>ATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744721" ref_strand="+" ref_description="SGN-E744721 [GI|40643242]">
      <seq>atggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20672" stop="19169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20372" g_stop="20162" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="333" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19469" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="735" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E744721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20372" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAA</genome_strand>
        <mrna_strand>ATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725273" ref_strand="+" ref_description="SGN-E725273 [FC26CD12]">
      <seq>gcggccaatcggccgaattgagtatcaacaacacccttatataagtcttcttttttgaccgctagaaccaacaaactgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20739" stop="19170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20435" g_stop="20162" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="296" r_length="274" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="418" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19470" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="819" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E725273" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20435" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTA</genome_strand>
        <mrna_strand>TATCAACAACACCCTTATATAAGTCTTCTTTTTTGACCGCTAGAACCAACAAACTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486870" ref_strand="+" ref_description="SGN-E486870 [cSTE-23-B21]">
      <seq>caactttcttgcaagtcttttgttttaccactagaaccaacaaatagttcatttcttcttcagcaatggccactgtttcctcagcctctgctgctcttagagctatttcttcttcctcatacaagctaccctctgccttccaaactacttctctttctcaaaagatccaatcttttaaactccctaaccctctcatttctcaaactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagaacagctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagctcaatgaacgtgaccgtggaagccctgcttatcttcgattgagccaaaagaatgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagacctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaattgcagcaactcatcttccctttcagctattctacactttttacttgaaggggatccccgatctgccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20682" stop="19270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20392" g_stop="20162" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="288" r_length="243" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="410" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19570" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="709" r_length="299" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E486870" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20392" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTA------------AAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTG</genome_strand>
        <mrna_strand>AGTTCATTTCTTCTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAGCTATTTCTTCTTCCTCATACAAGCTACCCTCTGCCTTCCAAACTACTTCTCTTTCTCAAAAGATCCAATCTTTTAAACTCCCTAACCCTCTCATTTCTCAAACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAACAGCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGCTCAATGAACGTGACCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGAATGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGACCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGT-AAATTGCAGCAACTCATCTTCCCTTTC-AGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393216" ref_strand="+" ref_description="SGN-E393216 [TUS-38-K17]">
      <seq>caacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcangggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20726" stop="19312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20426" g_stop="20162" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="387" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19612" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="646" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E393216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20426" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTAT</genome_strand>
        <mrna_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCANGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393155" ref_strand="+" ref_description="SGN-E393155 [TUS-38-L17]">
      <seq>caacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20726" stop="19351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20426" g_stop="20162" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="387" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19651" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="607" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E393155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20426" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTC</genome_strand>
        <mrna_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319026" ref_strand="+" ref_description="SGN-E319026 [cTOB-14-B3]">
      <seq>tttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacagtaagaaaactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20718" stop="19390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20418" g_stop="20153" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20152" i_stop="20074" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="388" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19690" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="569" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E319026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20418" e_stop="20153"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCG</genome_strand>
        <mrna_strand>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAA...............................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366633" ref_strand="+" ref_description="SGN-E366633 [cLPT-17-G3]">
      <seq>attcaagtcttcttttttgaccactagaaccaactaatagttcatttcttgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcctctgccttccaaactaaaaagatccaatcttttaaactcccaaaccctctcatttctcagactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaatactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20719" stop="19433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20392" g_stop="20162" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="269" r_length="231" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="391" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19733" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="529" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E366633" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20392" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCC</genome_strand>
        <mrna_strand>AGTTCATTTCTTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCCTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTCCCAAACCCTCTCATTTCTCAGACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAATA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367002" ref_strand="+" ref_description="SGN-E367002 [cLPT-6-H23]">
      <seq>tcaagtcttcttttttgaccactagaaccaactaatagttcatttcttgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcctctgccttccaaactaaaaagatccaatcttttaaactcccaaaccctctcatttctcagactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaatactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20717" stop="19477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20392" g_stop="20162" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="267" r_length="231" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="389" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19777" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="483" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E367002" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20392" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATG</genome_strand>
        <mrna_strand>AGTTCATTTCTTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCCTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTCCCAAACCCTCTCATTTCTCAGACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAATA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293219" ref_strand="+" ref_description="SGN-E293219 [cLET-12-B19]">
      <seq>aacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttattgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20725" stop="19521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20425" g_stop="20162" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="386" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19870" g_stop="19821" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="436" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E293219" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20425" e_stop="20162"/>
          <exon e_start="20073" e_stop="19952"/>
          <exon e_start="19870" e_stop="19821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTG</genome_strand>
        <mrna_strand>AACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTATTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337262" ref_strand="+" ref_description="SGN-E337262 [cTOE-7-B17]">
      <seq>aaagatccaatgttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaactcagtgtctatgagatcaatgaacgtgatcggggaagccctgctgatcttcgattgagccaaaagactgtgaattcactcggagatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="20589" stop="19670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20289" g_stop="20162" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20073" g_stop="19970" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="232" r_length="104" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E337262" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20289" e_stop="20162"/>
          <exon e_start="20073" e_stop="19970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTT</genome_strand>
        <mrna_strand>AAAGATCCAATGTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTCAGTGTCTATGAGATCAATGAACGTGATCGGGGAAGCCCTGCTGATCTTCGATTGAGCCAAAAGACTGTGAATTCACTCGGAGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711967" ref_strand="+" ref_description="SGN-E711967 [FB03CB01]">
      <seq>ccttagagaggcagagcaagcaaggagagaagaggaagaagcagaaaaaagaaggcaggaggaggaagaatcaaggagagaggagaaagcaagaagaaggcaacaggaggaagcaaggaggagagaggaggaagaagcagcaaaaaggcaacatgaggaagaagcagagagagaggcagaggaagcaagaaggatagaggaggaagaagcacaaagagaggcagaagaagcaaggagaatacaacaggaggaagaagcagagagagcaaggagaagagaagaagaagcagaaacaagaaggaaggaggaggaggaggaagaatcaaggagacaagaggaggaatcaaggaggagtgaagaagaggcagcaagagaggcagagagggaaaggcaagaggaagctgaaagacaagaagaagctaggagacgggaggaagaaacagaagagaggcatcaacaagaagaaaccgaggaagaggagccaggccaacctgaaatgaacggatattcctcaaactagcctatgagtgtgttgtgtaactagtgtactcagcaagttctcaggagctgaatagtctctacgtttttgtataatctcatgtgtgtgtacgtcttttcatttacttttgctgtcatatttatgagtttatgtaataacaccgaaacaagttttcatagatcacttttccctggcaagtctccagcaatgtagcagaaggtgttaggatgttatctggatgaaagcagttcatacatttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="+" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="28784" stop="30141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29080" g_stop="29841" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="+" ref_id="SGN-E711967" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29080" e_stop="29841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</genome_strand>
        <mrna_strand>CCTTAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713545" ref_strand="+" ref_description="SGN-E713545 [FB08DG02]">
      <seq>cggtagaagcagcaaaaaggcaacatgaggaagaagcagagagagaggcagaggaagcaagaaggatagaggaggaagaagcacaaagagaggcagaagaagcaaggagaatacaacaggaggaagaagcagagagagcaaggagaagagaagaagaagcagaaacaagaaggaaggaggaggaggaggaagaatcaaggagacaagaggaggaatcaaggaggagtgaagaagaggcagcaagagaggcagagagggaaaggcaagaggaagctgaaagacaagaagaagctaggagacgggaggaagaaacagaagagaggcatcaacaagaagaaaccgaggaagaggagccaggccaacctgaaatgaacggatattcctcaaactagcctatgagtgtgttgtgtaactagtgtactcagcaagttctcaggagctgaatagtctctacgtttttgtataatctcatgtgtgtgtacgtcttttcatttacttttgctgtcatatttatgagtttatgtaataacaccgaaacaagttttcatannaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="+" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="28909" stop="30056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29208" g_stop="29757" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="565"/>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="+" ref_id="SGN-E713545" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29208" e_stop="29757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAG</genome_strand>
        <mrna_strand>CGGTAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540144" ref_strand="+" ref_description="SGN-E540144 [TUS-60-E7]">
      <seq>cccactcttgacctccttggattaggaatggcagctagtgtcggtccatcgcctggattatctgcccttttaacatccatgggtagcaatcttgacatggtgacttcagctggatcatttggtagtgcagatttcagtgggaaagacttgggaagaaattcatgatatcttagagtcaggtttaatttattctgtataggacaatgaatttcacttgatgcagcaaaaaacatattggcaagctctcagccccaaagatttgagcataggatggcaggaggaaagaaggcagttggacacttttaagattgttctactgtctcctttgtgtaggaaaagtagaaaggttttttttctgctgtacagtagaagttgaatgtatagctgtattaaaactcctctgctttttgttacagatgaagctgttaatgtgtttagtatataatttgctataagcatatttaaccaagagaggctcatctagtgggaatttttatcaaatggtatctctatttcagacagtgcaaatttttataaaatttgtataattcagatgcataactaatgcagcagggttaaactctttgagcagaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="34396" stop="33201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34096" g_stop="33494" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E540144" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34096" e_stop="33494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAAAAAAGTTTAAA</genome_strand>
        <mrna_strand>CCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGGGTTAAACTCTTTGAGCAGAAAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286333" ref_strand="+" ref_description="SGN-E286333 [cLES-11-M19]">
      <seq>ccactcttgacctccttggattaggaatggcagctagtgtcggtccatcgcctggattatctgcccttttaacatccatgggtagcaatcttgacatggtgacttcagctggatcatttggtagtgcagatttcagtgggaaagacttgggaagaaattcatgatatcttagagtcaggtttaatttattctgtataggacaatgaatttcacttgatgcagcaaaaaacatattggcaagctctcagccccaaagatttgagcataggatggcaggaggaaagaaggcagttggacacttttaagattgttctactgtctcctttgtgtaggaaaagtagaaaggttttttttctgctgtacagtagaagttgaatgtatagctgtattaaaactcctctgctttttgttacagatgaagctgttaatgtgtttagtatataatttgctataagcatatttaaccaagagaggctcatctagtgggaatttttatcaaatggtatctctatttcagacagtgcaaatttttataaaatttgtataattcagatgcataactaatgcagcagtgttaaactctttgagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="34395" stop="33201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34095" g_stop="33494" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E286333" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34095" e_stop="33494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAAAAAAGTTTAAA</genome_strand>
        <mrna_strand>CCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540141" ref_strand="+" ref_description="SGN-E540141 [TUS-60-E7](-)">
      <seq>ctccttggattaggaatggcagctagtgtcggtccatcgcctggattatctgcctttttaacatccctgggtagcaatcttgacatggtgacttcagctggatcatttggtagtgcagatttcagtgggaaagacttgggaagaaattcatgatatcttagagtcaggtttaatttattcggtataggacaatgaatttcacttgatgcagcaaaaaacatattggcaagctctcagccccaaagatttgagcataggatggcaggaggaaagaaggcagttggacacttttaagattgttctactgtctcctttgtgtaggaaaagtagaaaggttttttttctgctgtacagtagaagttgaatgtatagctgtattaaaactcctctgctttttgttacagatgaagctgttaatgtgtttagtatataatttgctataagcatatttaaccaagagaggctcatctagtgggaatttttatcaaatggtatctctatttcagtacagtgcaaatttttataaaatttgtataattcagatgcataactaatgcagacagtgttaaactctttgagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="34384" stop="33201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34084" g_stop="33494" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E540141" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34084" e_stop="33494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAG-ACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAG-CAGTGTTAAACTCTTTGAGCAAAAAAGTTTAAA</genome_strand>
        <mrna_strand>CTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCTTTTTAACATCCCTGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCGGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGTACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGACAGTGTTAAACTCTTTGAGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367209" ref_strand="+" ref_description="SGN-E367209 [cLPT-5-I7]">
      <seq>accgtcaactgccgtaatgtcatttgcttcctctgttcaaaatcgagaattgcgggagaatccagtcacaaattctgctggagctgctacgaagcaagttctggaggaagcagcagcggtagcaagcttgactggaaactgtagcagctcttgtagtaatggaagtagtagcagcaatgtctttggaagtttgtttgcttcatcaacagcttcgggaagtttgccatctcaagctcctgttttttctgatatgtttcgagccatggcgcctgagcacactcttgagatggcaccaccttcatctacagaaccaatatctctcggcctagcgatgagtcacagttcgtcaatttttagaccagctggtcaagaacggaggcaatatgctcccgcaccacaaccagctatgtcggcaacagcattactgcagaaggcagctcagatgggtgcagcagcaaccagctcatcgttgttgaggggcattggggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="35516" stop="33962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35216" g_stop="35170" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35169" i_stop="34708" i_length="462">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34707" g_stop="34262" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="493" r_length="446" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E367209" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35216" e_stop="35170"/>
          <exon e_start="34707" e_stop="34262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAGGTACCTTCTCTGCGTTTGATGTTTGTCGCATTTGTGTTTGTTACATATCAAACAAAATAACTTTGTTGTTTCTATATCTTGGAAGCTAGTTAATTTTGTCATTTATTGATCTTTGTTCTTATCTGTATTTATTCTTTGTACAAAATCATTTATCTTTTTCTATTAATCAATCAGAATCTTGTAGACAGAAGTAGGGTCTAAAATAGGAAGGAAAAAAATGAAGAAAATGATCGGATAATTAATTATAAACTAAGATTCAATGTCATGAAACCGTTGGCTAAAGAAAGAATAAGTAGTATAATGCTTAAATAAGGTAAAGATTGTAAAGAAAAGATACTATATTTGGATCTCCTTTTGCAATAGATAATGTTCTTTTTCTATGAAAAGTTTTAACTTTCTCTGTTTCCTTAAAGAAGTATGCTTCTTTTCATCTTTTTAATATAACTGCTACAATTTGTGCAGAATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATG</genome_strand>
        <mrna_strand>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCTGTTCAAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTCTGGAGGAAGCAGCAGCGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTTTGCCATCTCAAGCTCCTGTTTTTTCTGATATGTTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTGTTGAGGGGCATTGGGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476388" ref_strand="+" ref_description="SGN-E476388 [cSTB-44-J11]">
      <seq>gtcaactgccgtaatgacatttgcttcctctgttcagaatcaagagttgcgggagaatccaatcacaaattctgctggagctgctacaaaacaagttctggaggaagcagcggcggtagcaagcttgactggaaactgtagcagctcttgtagtaatggaagtagtagcagcagtgtcttcggaagcttgtttgcttcatcaacagcttcgggaaattttgcatctcaaggtcctgttttttctgatatgtttcgagctatggcgcctgagcgcactcttgagatggcaccaccttcatctacagaaccaatatctctcggcctagcgatgagtcacagttcatcaatttttagaccagctggtcaagaacggaggcaatatgctcccgcaccacacccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="35513" stop="34050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35213" g_stop="35170" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35169" i_stop="34708" i_length="462">
            <donor d_prob="0.987" d_score="0.91"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34707" g_stop="34350" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="402" r_length="358" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E476388" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35213" e_stop="35170"/>
          <exon e_start="34707" e_stop="34350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAGGTACCTTCTCTGCGTTTGATGTTTGTCGCATTTGTGTTTGTTACATATCAAACAAAATAACTTTGTTGTTTCTATATCTTGGAAGCTAGTTAATTTTGTCATTTATTGATCTTTGTTCTTATCTGTATTTATTCTTTGTACAAAATCATTTATCTTTTTCTATTAATCAATCAGAATCTTGTAGACAGAAGTAGGGTCTAAAATAGGAAGGAAAAAAATGAAGAAAATGATCGGATAATTAATTATAAACTAAGATTCAATGTCATGAAACCGTTGGCTAAAGAAAGAATAAGTAGTATAATGCTTAAATAAGGTAAAGATTGTAAAGAAAAGATACTATATTTGGATCTCCTTTTGCAATAGATAATGTTCTTTTTCTATGAAAAGTTTTAACTTTCTCTGTTTCCTTAAAGAAGTATGCTTCTTTTCATCTTTTTAATATAACTGCTACAATTTGTGCAGAATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGC</genome_strand>
        <mrna_strand>GTCAACTGCCGTAATGACATTTGCTTCCTCTGTTCAGAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCGGGAGAATCCAATCACAAATTCTGCTGGAGCTGCTACAAAACAAGTTCTGGAGGAAGCAGCGGCGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAGTGTCTTCGGAAGCTTGTTTGCTTCATCAACAGCTTCGGGAAATTTTGCATCTCAAGGTCCTGTTTTTTCTGATATGTTTCGAGCTATGGCGCCTGAGCGCACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCATCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACACCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318077" ref_strand="+" ref_description="SGN-E318077 [cTOA-29-G4]">
      <seq>ttttcacattaaatttcctctctttctctctattgatttccgagccgccgacttgcgttgtcacaactgcttctcattttcatcgagtttttcttcattacttttacttataagcaaacccatttactcgaacttagcgactttcccggcagaaagttcacgccggtgattgactttctggtgattttggaatctgggtttttcagctaatttctatgttatggggatttgctattttagcttggtttgatcaaaactggtagttgggtgtatgaaagaaagaaaaacgaaaaagcaagattgactggtagatacggcgaaaagagagaaagtattgactcccccaagaaaagattgatatcaaaaaggtttttttaacataaatgttctaaagatttgcttttttgagcaacccccccccccaaaaaaaaaaaaaaaaaacatgccggccgacccagataactcatccgccatgaacgattctacaggctcaggtgaagcaagcgtttcgtcttcaggtaatcaagtagttcctctgaaagaatcagccaagaagaaacggaatcttcctgggatgccagatttgattttctgtttttggttgctttgattagatcccgatgcagaggttattgctttgtcaccaacaactttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0097L01-5YECB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0097L01.2" temp_strand="-" temp_description="C02SLm0097L01.2  AC215488.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0097L01 sequenced_by:kribb upload_account_name:korea">
        <position start="36895" stop="35580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36595" g_stop="36015" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36014" i_stop="35957" i_length="58">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35956" g_stop="35880" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="658" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0097L01.2" gen_strand="-" ref_id="SGN-E318077" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0097L01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36595" e_stop="36015"/>
          <exon e_start="35956" e_stop="35880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCCAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAGGTAAATCATGTTCCGTTACGATTCTTGATGAACCCAATTTTACTAATATTCAGCGAAGATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTG</genome_strand>
        <mrna_strand>TTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCAAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAG..........................................................ATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>43</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6877" PGL_stop="5293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6877" e_stop="6804"/>
            <exon e_start="6676" e_stop="6623"/>
            <exon e_start="6049" e_stop="5505"/>
            <exon e_start="5298" e_stop="5293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.455" acc_prob="0.949" e_score="0.959"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="6877" e_stop="6804" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.455" acc_prob="0.949">
            <gDNA_intron_boundary i_start="6803" i_stop="6677" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6676" e_stop="6623" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6622" i_stop="6050" i_length="573"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="6049" e_stop="5505" e_length="545"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="5504" i_stop="5299" i_length="206"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5298" e_stop="5293" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="6804"/>
              <exon start="6676" stop="6623"/>
              <exon start="6049" stop="5505"/>
              <exon start="5298" stop="5293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATCATGTTTCACATTTGGATAGACAAGTAATGGCAATTGGGTGGTTTTGGTTGAGTTCTCTTGTGGGAGGA : TTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGA : TGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATGCCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATTTTCACC : AGAAAA</gDNA_template>
            <first_frame> V  I  M  F  H  I  W  I  D  K  *  W  Q  L  G  G  F  G  *  V  L  L  W  E  D :   C  Q  Y  L  S  S  G  S  *  Q  V  K  E  A  E  L  L  D :   E  A  I  W  R  I  *  L  V  A  V  G  R  G  Q  L  F  Q  Q  L  M  P  A  L  L  H  D  F  H  N  R  Q  R  S  K  C  I  V  T  I  E  A  A  C  V  L  G  R  C  C  W  N  S  Q  H  *  *  G  G  T  R  P  S  I  H  V  K  T  C  G  K  R  A  S  A  I  I  L  V  *  Y  W  L  V  F  G  N  L  A  S  C  L  *  *  A  W  *  D  Y  A  Y  V  G  D  E  V  M  V  F  *  *  L  C  E  L  K  L  S  Y  S  V  R  L  T  P  R  Y  Q  N  I  D  Y  V  I  R  S  L  *  P  F  S  L  L  I  V  I  E  N  Y  L  K  D  V  K  S  V  W  N  Y  L  L  R  L  S  G  S  L  E  *  Y  R  C  C  *  I  I  R  F  Y  F  H   : Q  K  </first_frame>
            <second_frame>  S  S  C  F  T  F  G  *  T  S  N  G  N  W  V  V  L  V  E  F  S  C  G  R   : I  V  N  I  Y  Q  V  V  H  N  K  *  R  R  L  S  S  W   : M  K  L  F  G  G  S  D  *  W  L  L  G  E  V  N  S  F  S  N  *  C  P  L  C  C  M  T  S  I  T  A  R  D  Q  S  V  L  *  P  L  K  P  H  V  F  L  V  V  A  A  G  I  L  N  I  D  E  G  V  R  D  Q  A  S  M  L  R  R  V  V  R  G  L  L  P  L  Y  W  S  N  I  G  L  F  L  G  I  *  L  P  V  C  N  K  L  G  R  I  M  L  M  L  E  M  R  L  W  F  S  D  S  C  A  N  L  S  C  H  T  P  *  D  *  P  L  V  T  R  T  *  I  M  *  *  E  V  F  S  L  F  H  Y  *  L  *  S  R  I  I  S  R  M  L  S  Q  C  G  T  I  Y  C  D  Y  L  A  L  *  S  D  I  D  A  V  E  L  *  D  F  I  F  T  :  R  K </second_frame>
            <third_frame>   H  H  V  S  H  L  D  R  Q  V  M  A  I  G  W  F  W  L  S  S  L  V  G  G  :  L  S  I  S  I  K  W  F  I  T  S  E  G  G  *  A  L  G  :  *  S  Y  L  E  D  L  T  S  G  C  W  A  R  S  T  L  S  A  I  D  A  R  S  A  A  *  L  P  *  P  P  E  I  K  V  Y  C  N  H  *  S  R  M  C  S  W  S  L  L  L  E  F  S  T  L  M  R  G  Y  E  T  K  H  P  C  *  D  V  W  *  E  G  F  C  H  Y  I  G  L  I  L  A  C  F  W  E  F  S  F  L  S  V  I  S  L  V  G  L  C  L  C  W  R  *  G  Y  G  F  L  I  V  V  R  T  *  A  V  I  L  R  E  I  N  P  S  L  P  E  H  R  L  C  N  K  K  S  L  A  F  F  T  I  D  C  N  R  E  L  S  Q  G  C  *  V  S  V  E  L  F  T  A  I  I  W  L  S  R  V  I  *  M  L  L  N  Y  K  I  L  F  S  P :   E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0097L01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14237" PGL_stop="9535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14237" e_stop="13803"/>
            <exon e_start="9816" e_stop="9535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.748" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14237" e_stop="13803" e_length="435"/>
          </exon>
          <intron i_serial="1" don_prob="0.748" acc_prob="0.967">
            <gDNA_intron_boundary i_start="13802" i_stop="9817" i_length="3986"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="9816" e_stop="9535" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14237" stop="13803"/>
              <exon start="9816" stop="9535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543752" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAG : CAAAGTTAAGGTCTGTGAGACTCAGACAAGATTCCAGAGAGGGTATTGCAAACTTCGTGGCATTCAAGAACAAGGATGATAATTTTGAGTCGATCAAGATACCGGTTAAGTCAGCAAAAGCTATTGGCATTCAGGCCTTATCTTCAACCAGGTTTCTGATCTTGGACTCTGAAGGAAATCTTCACCTCTTGTTCCCTGCAACTTCTGTTCATGGATCAGAGACTCCTTATAGCATGAAACAGTTAACTCACAACATGAAAGTTCGAAAGCTCACTGTTCTTC</gDNA_template>
            <first_frame> G  F  P  *  N  W  L  P  M  L  M  Y  L  R  C  T  L  F  R  I  V  E  F  G  F  L  L  *  N  T  W  G  V  R  S  *  N  *  *  S  M  P  *  L  I  V  L  C  P  C  F  P  L  V  Y  L  L  G  S  *  F  W  G  K  I  M  E  S  G  F  S  P  C  G  H  W  S  K  E  E  L  R  K  R  G  L  P  I  R  K  V  *  M  V  G  *  K  K  I  K  W  R  *  K  S  Y  L  Y  E  M  G  *  Y  M  A  *  M  L  R  L  V  L  L  M  V  V  N  *  W  N  *  S  L  L  P  M  V  W  S  R  T  A  L  N  Q  :  Q  S  *  G  L  *  D  S  D  K  I  P  E  R  V  L  Q  T  S  W  H  S  R  T  R  M  I  I  L  S  R  S  R  Y  R  L  S  Q  Q  K  L  L  A  F  R  P  Y  L  Q  P  G  F  *  S  W  T  L  K  E  I  F  T  S  C  S  L  Q  L  L  F  M  D  Q  R  L  L  I  A  *  N  S  *  L  T  T  *  K  F  E  S  S  L  F  F </first_frame>
            <second_frame>  G  F  P  E  I  G  C  R  C  *  C  I  C  V  V  L  Y  F  E  *  *  S  L  G  F  C  C  E  T  P  G  G  *  G  A  E  I  N  E  V  C  R  D  *  L  F  S  A  R  V  F  H  *  C  I  F  W  G  P  D  F  G  G  R  *  W  S  Q  G  F  P  P  A  A  I  G  Q  R  K  S  *  E  R  E  G  Y  Q  *  E  K  F  E  W  W  V  R  K  R  *  N  G  D  K  K  A  T  F  T  K  W  D  D  T  W  H  E  C  *  D  *  C  C  *  W  *  *  I  D  G  T  E  V  Y  F  Q  W  Y  G  R  E  P  H  *  I  S :   K  V  K  V  C  E  T  Q  T  R  F  Q  R  G  Y  C  K  L  R  G  I  Q  E  Q  G  *  *  F  *  V  D  Q  D  T  G  *  V  S  K  S  Y  W  H  S  G  L  I  F  N  Q  V  S  D  L  G  L  *  R  K  S  S  P  L  V  P  C  N  F  C  S  W  I  R  D  S  L  *  H  E  T  V  N  S  Q  H  E  S  S  K  A  H  C  S   </second_frame>
            <third_frame>   V  S  L  K  L  V  A  D  V  N  V  F  A  L  Y  S  I  S  N  S  R  V  W  V  F  A  V  K  H  L  G  G  E  E  L  K  L  M  K  Y  A  V  I  D  C  S  L  P  V  F  S  I  S  V  S  F  G  V  L  I  L  G  E  D  N  G  V  R  V  F  P  L  R  P  L  V  K  G  R  V  K  K  E  R  A  T  N  K  K  S  L  N  G  G  L  E  K  D  K  M  E  I  K  K  L  P  L  R  N  G  M  I  H  G  M  N  A  E  I  S  A  A  D  G  S  K  L  M  E  L  K  F  T  S  N  G  M  V  E  N  R  T  E  S   : A  K  L  R  S  V  R  L  R  Q  D  S  R  E  G  I  A  N  F  V  A  F  K  N  K  D  D  N  F  E  S  I  K  I  P  V  K  S  A  K  A  I  G  I  Q  A  L  S  S  T  R  F  L  I  L  D  S  E  G  N  L  H  L  L  F  P  A  T  S  V  H  G  S  E  T  P  Y  S  M  K  Q  L  T  H  N  M  K  V  R  K  L  T  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14235" stop="13803"/>
                    <exon start="9816" stop="9536"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLKLVADVNVFALYSISNSRVWVFAVKHLGGEELKLMKYAVIDCSLPVFSISVSFGVLILGEDNGVRVFPLRPLVKGRVKKERATNKKSLNGGLEKDKMEIKKLPLRNGMIHGMNAEISAADGSKLMELKFTSNGMVENRTESAKLRSVRLRQDSREGIANFVAFKNKDDNFESIKIPVKSAKAIGIQALSSTRFLILDSEGNLHLLFPATSVHGSETPYSMKQLTHNMKVRKLTVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14236" e_stop="13803"/>
            <exon e_start="13653" e_stop="13649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.748" acc_prob="0.131" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14236" e_stop="13803" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.748" acc_prob="0.131">
            <gDNA_intron_boundary i_start="13802" i_stop="13654" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="13653" e_stop="13649" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14236" stop="13803"/>
              <exon start="13653" stop="13649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTCCCTGAAATTGGTTGCCGATGTTAATGTATTTGCGTTGTACTCTATTTCGAATAGTAGAGTTTGGGTTTTTGCTGTGAAACACCTGGGGGGTGAGGAGCTGAAATTAATGAAGTATGCCGTGATTGATTGTTCTCTGCCCGTGTTTTCCATTAGTGTATCTTTTGGGGTCCTGATTTTGGGGGAAGATAATGGAGTCAGGGTTTTCCCCCTGCGGCCATTGGTCAAAGGAAGAGTTAAGAAAGAGAGGGCTACCAATAAGAAAAGTTTGAATGGTGGGTTAGAAAAAGATAAAATGGAGATAAAAAAGCTACCTTTACGAAATGGGATGATACATGGCATGAATGCTGAGATTAGTGCTGCTGATGGTAGTAAATTGATGGAACTGAAGTTTACTTCCAATGGTATGGTCGAGAACCGCACTGAATCAG : CAAAA</gDNA_template>
            <first_frame> G  F  P  E  I  G  C  R  C  *  C  I  C  V  V  L  Y  F  E  *  *  S  L  G  F  C  C  E  T  P  G  G  *  G  A  E  I  N  E  V  C  R  D  *  L  F  S  A  R  V  F  H  *  C  I  F  W  G  P  D  F  G  G  R  *  W  S  Q  G  F  P  P  A  A  I  G  Q  R  K  S  *  E  R  E  G  Y  Q  *  E  K  F  E  W  W  V  R  K  R  *  N  G  D  K  K  A  T  F  T  K  W  D  D  T  W  H  E  C  *  D  *  C  C  *  W  *  *  I  D  G  T  E  V  Y  F  Q  W  Y  G  R  E  P  H  *  I  S :   K  </first_frame>
            <second_frame>  V  S  L  K  L  V  A  D  V  N  V  F  A  L  Y  S  I  S  N  S  R  V  W  V  F  A  V  K  H  L  G  G  E  E  L  K  L  M  K  Y  A  V  I  D  C  S  L  P  V  F  S  I  S  V  S  F  G  V  L  I  L  G  E  D  N  G  V  R  V  F  P  L  R  P  L  V  K  G  R  V  K  K  E  R  A  T  N  K  K  S  L  N  G  G  L  E  K  D  K  M  E  I  K  K  L  P  L  R  N  G  M  I  H  G  M  N  A  E  I  S  A  A  D  G  S  K  L  M  E  L  K  F  T  S  N  G  M  V  E  N  R  T  E  S   : A  K </second_frame>
            <third_frame>   F  P  *  N  W  L  P  M  L  M  Y  L  R  C  T  L  F  R  I  V  E  F  G  F  L  L  *  N  T  W  G  V  R  S  *  N  *  *  S  M  P  *  L  I  V  L  C  P  C  F  P  L  V  Y  L  L  G  S  *  F  W  G  K  I  M  E  S  G  F  S  P  C  G  H  W  S  K  E  E  L  R  K  R  G  L  P  I  R  K  V  *  M  V  G  *  K  K  I  K  W  R  *  K  S  Y  L  Y  E  M  G  *  Y  M  A  *  M  L  R  L  V  L  L  M  V  V  N  *  W  N  *  S  L  L  P  M  V  W  S  R  T  A  L  N  Q  :  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14235" stop="13803"/>
                    <exon start="13653" stop="13649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLKLVADVNVFALYSISNSRVWVFAVKHLGGEELKLMKYAVIDCSLPVFSISVSFGVLILGEDNGVRVFPLRPLVKGRVKKERATNKKSLNGGLEKDKMEIKKLPLRNGMIHGMNAEISAADGSKLMELKFTSNGMVENRTESAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19056" PGL_stop="19679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19056" e_stop="19679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="19056" e_stop="19679" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19056" stop="19570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19222" stop="19679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGGTTGCGGTGAGGTCTTGGATTCAAGCCCTTCAGAGCATAGTGGTCTCAATTTCGATCTCTTTGGATATGAAATCTCCTTTGTAAGGGAGAACTCTATGGTTCAAATAGTTATCGAACAAATACGTCCTTGAATTCATTACCAAATAATTTTTTCATTTTTATCTTTTTCTGGACTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTACTTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAGGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTCAGATGGCAGACCGGGGATCCCCTTCAAGTAAAAAGTGTAAAATAGCTTGAAAGGGAAAATGAGTTGCTGCAATTTCACTTGACCGGAAACCCCTGCAAATATGCCGGAT</gDNA_template>
            <first_frame> E  G  C  G  E  V  L  D  S  S  P  S  E  H  S  G  L  N  F  D  L  F  G  Y  E  I  S  F  V  R  E  N  S  M  V  Q  I  V  I  E  Q  I  R  P  *  I  H  Y  Q  I  I  F  S  F  L  S  F  S  G  L  Y  N  K  D  G  T  Y  H  I  G  I  Q  F  R  *  *  A  Y  I  Q  S  T  N  K  T  V  K  L  L  P  N  K  T  T  N  N  I  P  K  I  A  K  *  K  D  V  D  V  T  F  F  F  N  S  R  A  R  S  Y  *  L  F  Q  N  D  P  N  K  S  C  D  L  H  I  N  T  P  T  *  L  V  *  F  F  S  A  A  P  S  S  Q  A  L  A  S  G  V  G  S  T  V  G  D  G  G  T  A  V  H  N  N  S  D  G  R  P  G  I  P  F  K  *  K  V  *  N  S  L  K  G  K  M  S  C  C  N  F  T  *  P  E  T  P  A  N  M  P  D </first_frame>
            <second_frame>  R  V  A  V  R  S  W  I  Q  A  L  Q  S  I  V  V  S  I  S  I  S  L  D  M  K  S  P  L  *  G  R  T  L  W  F  K  *  L  S  N  K  Y  V  L  E  F  I  T  K  *  F  F  H  F  Y  L  F  L  D  F  I  I  K  M  E  R  I  T  *  G  Y  N  S  D  N  R  H  T  Y  K  V  L  T  K  Q  L  N  F  Y  P  T  K  R  Q  I  T  Y  Q  K  L  Q  N  K  R  T  L  M  L  L  F  F  L  I  L  E  H  V  V  I  D  Y  F  R  T  T  P  T  K  V  V  I  C  T  S  T  P  P  L  N  *  C  N  F  S  V  R  P  L  P  H  K  L  *  L  Q  V  L  A  P  P  S  A  T  E  E  P  P  Y  T  T  I  Q  M  A  D  R  G  S  P  S  S  K  K  C  K  I  A  *  K  G  K  *  V  A  A  I  S  L  D  R  K  P  L  Q  I  C  R   </second_frame>
            <third_frame>   G  L  R  *  G  L  G  F  K  P  F  R  A  *  W  S  Q  F  R  S  L  W  I  *  N  L  L  C  K  G  E  L  Y  G  S  N  S  Y  R  T  N  T  S  L  N  S  L  P  N  N  F  F  I  F  I  F  F  W  T  L  *  *  R  W  N  V  S  H  R  D  T  I  Q  I  I  G  I  H  T  K  Y  *  Q  N  S  *  T  F  T  Q  Q  N  D  K  *  H  T  K  N  C  K  I  K  G  R  *  C  Y  F  F  F  *  F  *  S  T  *  L  L  I  I  S  E  R  P  Q  Q  K  L  *  F  A  H  Q  H  P  H  L  I  S  V  I  F  Q  C  G  P  F  L  T  S  F  S  F  R  C  W  L  H  R  R  R  R  R  N  R  R  T  Q  Q  F  R  W  Q  T  G  D  P  L  Q  V  K  S  V  K  *  L  E  R  E  N  E  L  L  Q  F  H  L  T  G  N  P  C  K  Y  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19264" stop="19476"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYNSDNRHTYKVLTKQLNFYPTKRQITYQKLQNKRTLMLLFFLILEHVVIDYFRTTPTKVVICTSTPPLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20435" PGL_stop="19183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20435" e_stop="20162"/>
            <exon e_start="20073" e_stop="19952"/>
            <exon e_start="19870" e_stop="19183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20435" e_stop="20162" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="20161" i_stop="20074" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20073" e_stop="19952" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="19870" e_stop="19183" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20435" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20435" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20431" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20426" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20426" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20426" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20425" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20425" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20422" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20422" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20420" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20418" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20392" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20392" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20392" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20391" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20386" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20372" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20372" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20292" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20289" stop="20162"/>
              <exon start="20073" stop="19970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20282" stop="20162"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20072" stop="19952"/>
              <exon start="19870" stop="19318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19860" stop="19210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19831" stop="19270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19799" stop="19210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19774" stop="19382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19691" stop="19399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA : CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG : CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGAC</gDNA_template>
            <first_frame> Y  Q  Q  Q  P  H  L  S  L  L  F  *  P  L  E  P  T  N  C  S  A  M  A  T  V  S  S  A  S  A  A  L  R  T  I  S  S  S  S  S  K  L  S  S  A  F  Q  T  K  K  I  Q  S  F  K  L  P  N  P  L  I  S  Q  N  H  K  L  T  T  T  S  T  T  A  S  R  S  F  S  C  K  S  Q  S  T  S  T  D  S  T  N   : T  E  V  Q  E  L  S  V  Y  E  I  N  E  R  D  R  G  S  P  A  Y  L  R  L  S  Q  K  T  V  N  S  L  G  D  L  V  P  F  S  N  K  :  L  Y  T  A  D  L  K  K  R  I  G  I  T  A  G  L  C  I  L  I  K  H  E  E  E  K  K  G  D  R  Y  E  A  V  Y  S  F  Y  F  G  D  Y  G  H  I  A  V  Q  G  A  Y  L  T  Y  E  E  T  Y  L  A  V  T  G  G  S  G  I  F  A  G  V  S  G  Q  V  K  L  Q  Q  L  I  F  P  F  K  L  F  Y  T  F  Y  L  K  G  I  P  G  L  P  S  E  L  L  C  T  A  V  P  P  S  P  T  V  E  P  T  P  E  A  K  A  C  E  E  G  A  A  L  K  N  Y  T  N  *  V  G  V  L  M  C  K  S  Q  L  L  L  G  S  F  *  N  N  Q  *  L  R  A  L  E  L  K  K  K  V  T  S  T  S  F  Y  F  A  I  F  G  M  L  F  V  V  L  L  G  K  S  L  T  V  L  L  V  L  C  M  Y  A  Y  Y  L  N  C  I  P  M  *  Y  V  P  S  L  L  *  S  P  E  K  D  K  N  E  K  I  I  W  *  *  I  Q  G  </first_frame>
            <second_frame>  I  N  N  N  L  I  *  V  F  F  F  D  R  *  N  Q  Q  I  V  Q  Q  W  P  L  F  P  Q  P  L  L  L  L  E  P  F  L  L  P  H  P  S  Y  L  L  P  S  K  L  K  R  S  N  L  L  N  Y  L  T  L  S  F  L  R  I  I  N  L  L  P  P  L  L  L  L  P  D  H  F  P  A  R  A  R  A  P  Q  Q  I  Q  L  T  :  L  K  F  K  N  L  V  S  M  R  S  M  N  V  I  V  E  A  L  L  I  F  D  *  A  K  R  L  L  I  H  S  E  I  L  S  P  L  A  T  S :   Y  I  L  Q  I  *  R  R  E  L  E  *  Q  Q  D  S  A  F  *  S  S  T  K  K  R  R  K  E  I  A  M  K  L  F  T  A  S  T  S  A  I  T  V  I  S  P  F  R  E  R  T  *  P  M  K  K  L  T  *  P  S  P  V  D  P  A  Y  L  Q  G  F  P  V  K  *  N  C  S  N  S  F  S  L  S  S  Y  F  T  L  F  T  *  R  G  S  P  V  C  H  L  N  C  C  V  R  R  F  L  R  R  R  R  W  S  Q  H  L  K  L  K  L  V  R  K  G  P  H  *  K  I  T  L  I  K  W  G  C  *  C  A  N  H  N  F  C  W  G  R  S  E  I  I  N  N  Y  V  L  *  N  *  K  K  K  *  H  Q  R  P  F  I  L  Q  F  L  V  C  Y  L  S  F  C  W  V  K  V  *  L  F  C  *  Y  F  V  C  M  P  I  I  *  I  V  S  L  C  D  T  F  H  L  Y  Y  K  V  Q  K  K  I  K  M  K  K  L  F  G  N  E  F  K  D </second_frame>
            <third_frame>   S  T  T  T  S  F  K  S  S  F  L  T  A  R  T  N  K  L  F  S  N  G  H  C  F  L  S  L  C  C  S  *  N  H  F  F  F  L  I  Q  A  I  F  C  L  P  N  *  K  D  P  I  F  *  T  T  *  P  S  H  F  S  E  S  *  T  Y  Y  H  L  Y  Y  C  F  Q  I  I  F  L  Q  E  P  E  H  L  N  R  F  N  *  H :   *  S  S  R  T  *  C  L  *  D  Q  *  T  *  S  W  K  P  C  L  S  S  I  E  P  K  D  C  *  F  T  R  R  S  C  P  L  *  Q  Q   : A  I  Y  C  R  S  K  E  E  N  W  N  N  S  R  T  L  H  S  D  Q  A  R  R  R  E  E  R  R  S  L  *  S  C  L  Q  L  L  L  R  R  L  R  S  Y  R  R  S  G  S  V  L  N  L  *  R  N  L  P  S  R  H  R  W  I  R  H  I  C  R  G  F  R  S  S  E  I  A  A  T  H  F  P  F  Q  A  I  L  H  F  L  L  E  G  D  P  R  S  A  I  *  I  V  V  Y  G  G  S  S  V  A  D  G  G  A  N  T  *  S  *  S  L  *  G  R  G  R  T  E  K  L  H  *  L  S  G  G  V  D  V  Q  I  T  T  F  V  G  V  V  L  K  *  S  I  T  T  C  S  R  I  K  K  K  S  N  I  N  V  L  L  F  C  N  F  W  Y  V  I  C  R  F  V  G  *  K  F  N  C  F  V  S  T  L  Y  V  C  L  L  S  E  L  Y  P  Y  V  I  R  S  I  F  I  I  K  S  R  K  R  *  K  *  K  N  Y  L  V  M  N  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20399" stop="20162"/>
                    <exon start="20073" stop="19952"/>
                    <exon start="19870" stop="19469"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLEPTNCSAMATVSSASAALRTISSSSSKLSSAFQTKKIQSFKLPNPLISQNHKLTTTSTTASRSFSCKSQSTSTDSTNTEVQELSVYEINERDRGSPAYLRLSQKTVNSLGDLVPFSNKLYTADLKKRIGITAGLCILIKHEEEKKGDRYEAVYSFYFGDYGHIAVQGAYLTYEETYLAVTGGSGIFAGVSGQVKLQQLIFPFKLFYTFYLKGIPGLPSELLCTAVPPSPTVEPTPEAKACEEGAALKNYTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20418" e_stop="20153"/>
            <exon e_start="20073" e_stop="19952"/>
            <exon e_start="19870" e_stop="19210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20418" e_stop="20153" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.985">
            <gDNA_intron_boundary i_start="20152" i_stop="20074" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20073" e_stop="19952" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="19951" i_stop="19871" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="19870" e_stop="19210" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20418" stop="20153"/>
              <exon start="20073" stop="19952"/>
              <exon start="19870" stop="19690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20072" stop="19952"/>
              <exon start="19870" stop="19318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19860" stop="19210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19831" stop="19270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19799" stop="19210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19774" stop="19382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19691" stop="19399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAA : CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG : CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAA</gDNA_template>
            <first_frame> F  K  S  S  F  L  T  A  R  T  N  K  L  F  S  N  G  H  C  F  L  S  L  C  C  S  *  N  H  F  F  F  L  I  Q  A  I  F  C  L  P  N  *  K  D  P  I  F  *  T  T  *  P  S  H  F  S  E  S  *  T  Y  Y  H  L  Y  Y  C  F  Q  I  I  F  L  Q  E  P  E  H  L  N  R  F  N  *  Q  *  E  N :   *  S  S  R  T  *  C  L  *  D  Q  *  T  *  S  W  K  P  C  L  S  S  I  E  P  K  D  C  *  F  T  R  R  S  C  P  L  *  Q  Q   : A  I  Y  C  R  S  K  E  E  N  W  N  N  S  R  T  L  H  S  D  Q  A  R  R  R  E  E  R  R  S  L  *  S  C  L  Q  L  L  L  R  R  L  R  S  Y  R  R  S  G  S  V  L  N  L  *  R  N  L  P  S  R  H  R  W  I  R  H  I  C  R  G  F  R  S  S  E  I  A  A  T  H  F  P  F  Q  A  I  L  H  F  L  L  E  G  D  P  R  S  A  I  *  I  V  V  Y  G  G  S  S  V  A  D  G  G  A  N  T  *  S  *  S  L  *  G  R  G  R  T  E  K  L  H  *  L  S  G  G  V  D  V  Q  I  T  T  F  V  G  V  V  L  K  *  S  I  T  T  C  S  R  I  K  K  K  S  N  I  N  V  L  L  F  C  N  F  W  Y  V  I  C  R  F  V  G  *  K  F  N  C  F  V  S  T  L  Y  V  C  L  L  S  E  L  Y  P  Y  V  I  R  S  I  F  I  I  K  S  R  K  R  *  K  *   </first_frame>
            <second_frame>  L  S  L  L  F  *  P  L  E  P  T  N  C  S  A  M  A  T  V  S  S  A  S  A  A  L  R  T  I  S  S  S  S  S  K  L  S  S  A  F  Q  T  K  K  I  Q  S  F  K  L  P  N  P  L  I  S  Q  N  H  K  L  T  T  T  S  T  T  A  S  R  S  F  S  C  K  S  Q  S  T  S  T  D  S  T  N  S  K  K   : T  E  V  Q  E  L  S  V  Y  E  I  N  E  R  D  R  G  S  P  A  Y  L  R  L  S  Q  K  T  V  N  S  L  G  D  L  V  P  F  S  N  K  :  L  Y  T  A  D  L  K  K  R  I  G  I  T  A  G  L  C  I  L  I  K  H  E  E  E  K  K  G  D  R  Y  E  A  V  Y  S  F  Y  F  G  D  Y  G  H  I  A  V  Q  G  A  Y  L  T  Y  E  E  T  Y  L  A  V  T  G  G  S  G  I  F  A  G  V  S  G  Q  V  K  L  Q  Q  L  I  F  P  F  K  L  F  Y  T  F  Y  L  K  G  I  P  G  L  P  S  E  L  L  C  T  A  V  P  P  S  P  T  V  E  P  T  P  E  A  K  A  C  E  E  G  A  A  L  K  N  Y  T  N  *  V  G  V  L  M  C  K  S  Q  L  L  L  G  S  F  *  N  N  Q  *  L  R  A  L  E  L  K  K  K  V  T  S  T  S  F  Y  F  A  I  F  G  M  L  F  V  V  L  L  G  K  S  L  T  V  L  L  V  L  C  M  Y  A  Y  Y  L  N  C  I  P  M  *  Y  V  P  S  L  L  *  S  P  E  K  D  K  N  E  </second_frame>
            <third_frame>   *  V  F  F  F  D  R  *  N  Q  Q  I  V  Q  Q  W  P  L  F  P  Q  P  L  L  L  L  E  P  F  L  L  P  H  P  S  Y  L  L  P  S  K  L  K  R  S  N  L  L  N  Y  L  T  L  S  F  L  R  I  I  N  L  L  P  P  L  L  L  L  P  D  H  F  P  A  R  A  R  A  P  Q  Q  I  Q  L  T  V  R  K  :  L  K  F  K  N  L  V  S  M  R  S  M  N  V  I  V  E  A  L  L  I  F  D  *  A  K  R  L  L  I  H  S  E  I  L  S  P  L  A  T  S :   Y  I  L  Q  I  *  R  R  E  L  E  *  Q  Q  D  S  A  F  *  S  S  T  K  K  R  R  K  E  I  A  M  K  L  F  T  A  S  T  S  A  I  T  V  I  S  P  F  R  E  R  T  *  P  M  K  K  L  T  *  P  S  P  V  D  P  A  Y  L  Q  G  F  P  V  K  *  N  C  S  N  S  F  S  L  S  S  Y  F  T  L  F  T  *  R  G  S  P  V  C  H  L  N  C  C  V  R  R  F  L  R  R  R  R  W  S  Q  H  L  K  L  K  L  V  R  K  G  P  H  *  K  I  T  L  I  K  W  G  C  *  C  A  N  H  N  F  C  W  G  R  S  E  I  I  N  N  Y  V  L  *  N  *  K  K  K  *  H  Q  R  P  F  I  L  Q  F  L  V  C  Y  L  S  F  C  W  V  K  V  *  L  F  C  *  Y  F  V  C  M  P  I  I  *  I  V  S  L  C  D  T  F  H  L  Y  Y  K  V  Q  K  K  I  K  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20399" stop="20153"/>
                    <exon start="20073" stop="19952"/>
                    <exon start="19870" stop="19469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLEPTNCSAMATVSSASAALRTISSSSSKLSSAFQTKKIQSFKLPNPLISQNHKLTTTSTTASRSFSCKSQSTSTDSTNSKKTEVQELSVYEINERDRGSPAYLRLSQKTVNSLGDLVPFSNKLYTADLKKRIGITAGLCILIKHEEEKKGDRYEAVYSFYFGDYGHIAVQGAYLTYEETYLAVTGGSGIFAGVSGQVKLQQLIFPFKLFYTFYLKGIPGLPSELLCTAVPPSPTVEPTPEAKACEEGAALKNYTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="19871" e_stop="19210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="19871" e_stop="19210" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19871" stop="19270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19860" stop="19210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19831" stop="19270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19799" stop="19210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19774" stop="19382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19691" stop="19399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAA</gDNA_template>
            <first_frame> A  I  Y  C  R  S  K  E  E  N  W  N  N  S  R  T  L  H  S  D  Q  A  R  R  R  E  E  R  R  S  L  *  S  C  L  Q  L  L  L  R  R  L  R  S  Y  R  R  S  G  S  V  L  N  L  *  R  N  L  P  S  R  H  R  W  I  R  H  I  C  R  G  F  R  S  S  E  I  A  A  T  H  F  P  F  Q  A  I  L  H  F  L  L  E  G  D  P  R  S  A  I  *  I  V  V  Y  G  G  S  S  V  A  D  G  G  A  N  T  *  S  *  S  L  *  G  R  G  R  T  E  K  L  H  *  L  S  G  G  V  D  V  Q  I  T  T  F  V  G  V  V  L  K  *  S  I  T  T  C  S  R  I  K  K  K  S  N  I  N  V  L  L  F  C  N  F  W  Y  V  I  C  R  F  V  G  *  K  F  N  C  F  V  S  T  L  Y  V  C  L  L  S  E  L  Y  P  Y  V  I  R  S  I  F  I  I  K  S  R  K  R  *  K  *   </first_frame>
            <second_frame>  L  Y  T  A  D  L  K  K  R  I  G  I  T  A  G  L  C  I  L  I  K  H  E  E  E  K  K  G  D  R  Y  E  A  V  Y  S  F  Y  F  G  D  Y  G  H  I  A  V  Q  G  A  Y  L  T  Y  E  E  T  Y  L  A  V  T  G  G  S  G  I  F  A  G  V  S  G  Q  V  K  L  Q  Q  L  I  F  P  F  K  L  F  Y  T  F  Y  L  K  G  I  P  G  L  P  S  E  L  L  C  T  A  V  P  P  S  P  T  V  E  P  T  P  E  A  K  A  C  E  E  G  A  A  L  K  N  Y  T  N  *  V  G  V  L  M  C  K  S  Q  L  L  L  G  S  F  *  N  N  Q  *  L  R  A  L  E  L  K  K  K  V  T  S  T  S  F  Y  F  A  I  F  G  M  L  F  V  V  L  L  G  K  S  L  T  V  L  L  V  L  C  M  Y  A  Y  Y  L  N  C  I  P  M  *  Y  V  P  S  L  L  *  S  P  E  K  D  K  N  E  </second_frame>
            <third_frame>   Y  I  L  Q  I  *  R  R  E  L  E  *  Q  Q  D  S  A  F  *  S  S  T  K  K  R  R  K  E  I  A  M  K  L  F  T  A  S  T  S  A  I  T  V  I  S  P  F  R  E  R  T  *  P  M  K  K  L  T  *  P  S  P  V  D  P  A  Y  L  Q  G  F  P  V  K  *  N  C  S  N  S  F  S  L  S  S  Y  F  T  L  F  T  *  R  G  S  P  V  C  H  L  N  C  C  V  R  R  F  L  R  R  R  R  W  S  Q  H  L  K  L  K  L  V  R  K  G  P  H  *  K  I  T  L  I  K  W  G  C  *  C  A  N  H  N  F  C  W  G  R  S  E  I  I  N  N  Y  V  L  *  N  *  K  K  K  *  H  Q  R  P  F  I  L  Q  F  L  V  C  Y  L  S  F  C  W  V  K  V  *  L  F  C  *  Y  F  V  C  M  P  I  I  *  I  V  S  L  C  D  T  F  H  L  Y  Y  K  V  Q  K  K  I  K  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19870" stop="19469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYTADLKKRIGITAGLCILIKHEEEKKGDRYEAVYSFYFGDYGHIAVQGAYLTYEETYLAVTGGSGIFAGVSGQVKLQQLIFPFKLFYTFYLKGIPGLPSELLCTAVPPSPTVEPTPEAKACEEGAALKNYTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29080" PGL_stop="29841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29080" e_stop="29841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29080" e_stop="29841" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29080" stop="29841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29208" stop="29757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAGAGAGGCAGAGCAAGCAAGGAGAGAAGAGGAAGAAGCAGAAAAAAGAAGGCAGGAGGAGGAAGAATCAAGGAGAGAGGAGAAAGCAAGAAGAAGGCAACAGGAGGAAGCAAGGAGGAGAGAGGAGGAAGAAGCAGCAAAAAGGCAACATGAGGAAGAAGCAGAGAGAGAGGCAGAGGAAGCAAGAAGGATAGAGGAGGAAGAAGCACAAAGAGAGGCAGAAGAAGCAAGGAGAATACAACAGGAGGAAGAAGCAGAGAGAGCAAGGAGAAGAGAAGAAGAAGCAGAAACAAGAAGGAAGGAGGAGGAGGAGGAAGAATCAAGGAGACAAGAGGAGGAATCAAGGAGGAGTGAAGAAGAGGCAGCAAGAGAGGCAGAGAGGGAAAGGCAAGAGGAAGCTGAAAGACAAGAAGAAGCTAGGAGACGGGAGGAAGAAACAGAAGAGAGGCATCAACAAGAAGAAACCGAGGAAGAGGAGCCAGGCCAACCTGAAATGAACGGATATTCCTCAAACTAGCCTATGAGTGTGTTGTGTAACTAGTGTACTCAGCAAGTTCTCAGGAGCTGAATAGTCTCTACGTTTTTGTATAATCTCATGTGTGTGTACGTCTTTTCATTTACTTTTGCTGTCATATTTATGAGTTTATGTAATAACACCGAAACAAGTTTTCATAGATCACTTTTCCCTGGCAAGTCTCCAGCAATGTAGCAGAAGGTGTTAGGATGTTATCTGGATGAAAGCAGTTCATACATTTAAAT</gDNA_template>
            <first_frame> T  K  R  G  R  A  S  K  E  R  R  G  R  S  R  K  K  K  A  G  G  G  R  I  K  E  R  G  E  S  K  K  K  A  T  G  G  S  K  E  E  R  G  G  R  S  S  K  K  A  T  *  G  R  S  R  E  R  G  R  G  S  K  K  D  R  G  G  R  S  T  K  R  G  R  R  S  K  E  N  T  T  G  G  R  S  R  E  S  K  E  K  R  R  R  S  R  N  K  K  E  G  G  G  G  G  R  I  K  E  T  R  G  G  I  K  E  E  *  R  R  G  S  K  R  G  R  E  G  K  A  R  G  S  *  K  T  R  R  S  *  E  T  G  G  R  N  R  R  E  A  S  T  R  R  N  R  G  R  G  A  R  P  T  *  N  E  R  I  F  L  K  L  A  Y  E  C  V  V  *  L  V  Y  S  A  S  S  Q  E  L  N  S  L  Y  V  F  V  *  S  H  V  C  V  R  L  F  I  Y  F  C  C  H  I  Y  E  F  M  *  *  H  R  N  K  F  S  *  I  T  F  P  W  Q  V  S  S  N  V  A  E  G  V  R  M  L  S  G  *  K  Q  F  I  H  L  N </first_frame>
            <second_frame>  Q  R  E  A  E  Q  A  R  R  E  E  E  E  A  E  K  R  R  Q  E  E  E  E  S  R  R  E  E  K  A  R  R  R  Q  Q  E  E  A  R  R  R  E  E  E  E  A  A  K  R  Q  H  E  E  E  A  E  R  E  A  E  E  A  R  R  I  E  E  E  E  A  Q  R  E  A  E  E  A  R  R  I  Q  Q  E  E  E  A  E  R  A  R  R  R  E  E  E  A  E  T  R  R  K  E  E  E  E  E  E  S  R  R  Q  E  E  E  S  R  R  S  E  E  E  A  A  R  E  A  E  R  E  R  Q  E  E  A  E  R  Q  E  E  A  R  R  R  E  E  E  T  E  E  R  H  Q  Q  E  E  T  E  E  E  E  P  G  Q  P  E  M  N  G  Y  S  S  N  *  P  M  S  V  L  C  N  *  C  T  Q  Q  V  L  R  S  *  I  V  S  T  F  L  Y  N  L  M  C  V  Y  V  F  S  F  T  F  A  V  I  F  M  S  L  C  N  N  T  E  T  S  F  H  R  S  L  F  P  G  K  S  P  A  M  *  Q  K  V  L  G  C  Y  L  D  E  S  S  S  Y  I  *   </second_frame>
            <third_frame>   K  E  R  Q  S  K  Q  G  E  K  R  K  K  Q  K  K  E  G  R  R  R  K  N  Q  G  E  R  R  K  Q  E  E  G  N  R  R  K  Q  G  G  E  R  R  K  K  Q  Q  K  G  N  M  R  K  K  Q  R  E  R  Q  R  K  Q  E  G  *  R  R  K  K  H  K  E  R  Q  K  K  Q  G  E  Y  N  R  R  K  K  Q  R  E  Q  G  E  E  K  K  K  Q  K  Q  E  G  R  R  R  R  R  K  N  Q  G  D  K  R  R  N  Q  G  G  V  K  K  R  Q  Q  E  R  Q  R  G  K  G  K  R  K  L  K  D  K  K  K  L  G  D  G  R  K  K  Q  K  R  G  I  N  K  K  K  P  R  K  R  S  Q  A  N  L  K  *  T  D  I  P  Q  T  S  L  *  V  C  C  V  T  S  V  L  S  K  F  S  G  A  E  *  S  L  R  F  C  I  I  S  C  V  C  T  S  F  H  L  L  L  L  S  Y  L  *  V  Y  V  I  T  P  K  Q  V  F  I  D  H  F  S  L  A  S  L  Q  Q  C  S  R  R  C  *  D  V  I  W  M  K  A  V  H  T  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29081" stop="29599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREAEQARREEEEAEKRRQEEEESRREEKARRRQQEEARRREEEEAAKRQHEEEAEREAEEARRIEEEEAQREAEEARRIQQEEEAERARRREEEAETRRKEEEEEESRRQEEESRRSEEEAAREAERERQEEAERQEEARRREEETEERHQQEETEEEEPGQPEMNGYSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34096" PGL_stop="33494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34096" e_stop="33494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="34096" e_stop="33494" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34096" stop="33494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34095" stop="33494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34084" stop="33494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACTCTTGACCTCCTTGGATTAGGAATGGCAGCTAGTGTCGGTCCATCGCCTGGATTATCTGCCCTTTTAACATCCATGGGTAGCAATCTTGACATGGTGACTTCAGCTGGATCATTTGGTAGTGCAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCATGATATCTTAGAGTCAGGTTTAATTTATTCTGTATAGGACAATGAATTTCACTTGATGCAGCAAAAAACATATTGGCAAGCTCTCAGCCCCAAAGATTTGAGCATAGGATGGCAGGAGGAAAGAAGGCAGTTGGACACTTTTAAGATTGTTCTACTGTCTCCTTTGTGTAGGAAAAGTAGAAAGGTTTTTTTTCTGCTGTACAGTAGAAGTTGAATGTATAGCTGTATTAAAACTCCTCTGCTTTTTGTTACAGATGAAGCTGTTAATGTGTTTAGTATATAATTTGCTATAAGCATATTTAACCAAGAGAGGCTCATCTAGTGGGAATTTTTATCAAATGGTATCTCTATTTCAGACAGTGCAAATTTTTATAAAATTTGTATAATTCAGATGCATAACTAATGCAGCAGTGTTAAACTCTTTGAGCAAAAAAGTTTAAA</gDNA_template>
            <first_frame> P  T  L  D  L  L  G  L  G  M  A  A  S  V  G  P  S  P  G  L  S  A  L  L  T  S  M  G  S  N  L  D  M  V  T  S  A  G  S  F  G  S  A  D  F  S  G  K  D  L  G  R  N  S  *  Y  L  R  V  R  F  N  L  F  C  I  G  Q  *  I  S  L  D  A  A  K  N  I  L  A  S  S  Q  P  Q  R  F  E  H  R  M  A  G  G  K  K  A  V  G  H  F  *  D  C  S  T  V  S  F  V  *  E  K  *  K  G  F  F  S  A  V  Q  *  K  L  N  V  *  L  Y  *  N  S  S  A  F  C  Y  R  *  S  C  *  C  V  *  Y  I  I  C  Y  K  H  I  *  P  R  E  A  H  L  V  G  I  F  I  K  W  Y  L  Y  F  R  Q  C  K  F  L  *  N  L  Y  N  S  D  A  *  L  M  Q  Q  C  *  T  L  *  A  K  K  F  K </first_frame>
            <second_frame>  P  L  L  T  S  L  D  *  E  W  Q  L  V  S  V  H  R  L  D  Y  L  P  F  *  H  P  W  V  A  I  L  T  W  *  L  Q  L  D  H  L  V  V  Q  I  S  V  G  K  T  W  E  E  I  H  D  I  L  E  S  G  L  I  Y  S  V  *  D  N  E  F  H  L  M  Q  Q  K  T  Y  W  Q  A  L  S  P  K  D  L  S  I  G  W  Q  E  E  R  R  Q  L  D  T  F  K  I  V  L  L  S  P  L  C  R  K  S  R  K  V  F  F  L  L  Y  S  R  S  *  M  Y  S  C  I  K  T  P  L  L  F  V  T  D  E  A  V  N  V  F  S  I  *  F  A  I  S  I  F  N  Q  E  R  L  I  *  W  E  F  L  S  N  G  I  S  I  S  D  S  A  N  F  Y  K  I  C  I  I  Q  M  H  N  *  C  S  S  V  K  L  F  E  Q  K  S  L   </second_frame>
            <third_frame>   H  S  *  P  P  W  I  R  N  G  S  *  C  R  S  I  A  W  I  I  C  P  F  N  I  H  G  *  Q  S  *  H  G  D  F  S  W  I  I  W  *  C  R  F  Q  W  E  R  L  G  K  K  F  M  I  S  *  S  Q  V  *  F  I  L  Y  R  T  M  N  F  T  *  C  S  K  K  H  I  G  K  L  S  A  P  K  I  *  A  *  D  G  R  R  K  E  G  S  W  T  L  L  R  L  F  Y  C  L  L  C  V  G  K  V  E  R  F  F  F  C  C  T  V  E  V  E  C  I  A  V  L  K  L  L  C  F  L  L  Q  M  K  L  L  M  C  L  V  Y  N  L  L  *  A  Y  L  T  K  R  G  S  S  S  G  N  F  Y  Q  M  V  S  L  F  Q  T  V  Q  I  F  I  K  F  V  *  F  R  C  I  T  N  A  A  V  L  N  S  L  S  K  K  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0097L01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="35216" PGL_stop="34262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35216" e_stop="35170"/>
            <exon e_start="34707" e_stop="34262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="0.979"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="35216" e_stop="35170" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="35169" i_stop="34708" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="34707" e_stop="34262" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35216" stop="35170"/>
              <exon start="34707" stop="34262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35213" stop="35170"/>
              <exon start="34707" stop="34350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGTCAACTGCCGTAATGTCATTTGCTTCCTCCGTTCAAAATCGAG : AATTGCGGGAGAATCCAGTCACAAATTCTGCTGGAGCTGCTACGAAGCAAGTTGTGGAGGAAGCAGCAGTGGTAGCAAGCTTGACTGGAAACTGTAGCAGCTCTTGTAGTAATGGAAGTAGTAGCAGCAATGTCTTTGGAAGTTTGTTTGCTTCATCAACAGCTTCGGGAAGTCTGCCATCTCAAGCTCCTGTTTTTTCTGATATATTTCGAGCCATGGCGCCTGAGCACACTCTTGAGATGGCACCACCTTCATCTACAGAACCAATATCTCTCGGCCTAGCGATGAGTCACAGTTCGTCAATTTTTAGACCAGCTGGTCAAGAACGGAGGCAATATGCTCCCGCACCACAACCAGCTATGTCGGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCGTTCTTGAGGGGCATTGGGGTTATG</gDNA_template>
            <first_frame> T  V  N  C  R  N  V  I  C  F  L  R  S  K  S  R :   I  A  G  E  S  S  H  K  F  C  W  S  C  Y  E  A  S  C  G  G  S  S  S  G  S  K  L  D  W  K  L  *  Q  L  L  *  *  W  K  *  *  Q  Q  C  L  W  K  F  V  C  F  I  N  S  F  G  K  S  A  I  S  S  S  C  F  F  *  Y  I  S  S  H  G  A  *  A  H  S  *  D  G  T  T  F  I  Y  R  T  N  I  S  R  P  S  D  E  S  Q  F  V  N  F  *  T  S  W  S  R  T  E  A  I  C  S  R  T  T  T  S  Y  V  G  N  S  I  T  A  E  G  S  S  D  G  C  S  S  N  Q  L  I  V  L  E  G  H  W  G  Y  </first_frame>
            <second_frame>  P  S  T  A  V  M  S  F  A  S  S  V  Q  N  R   : E  L  R  E  N  P  V  T  N  S  A  G  A  A  T  K  Q  V  V  E  E  A  A  V  V  A  S  L  T  G  N  C  S  S  S  C  S  N  G  S  S  S  S  N  V  F  G  S  L  F  A  S  S  T  A  S  G  S  L  P  S  Q  A  P  V  F  S  D  I  F  R  A  M  A  P  E  H  T  L  E  M  A  P  P  S  S  T  E  P  I  S  L  G  L  A  M  S  H  S  S  S  I  F  R  P  A  G  Q  E  R  R  Q  Y  A  P  A  P  Q  P  A  M  S  A  T  A  L  L  Q  K  A  A  Q  M  G  A  A  A  T  S  S  S  F  L  R  G  I  G  V  M </second_frame>
            <third_frame>   R  Q  L  P  *  C  H  L  L  P  P  F  K  I  E  :  N  C  G  R  I  Q  S  Q  I  L  L  E  L  L  R  S  K  L  W  R  K  Q  Q  W  *  Q  A  *  L  E  T  V  A  A  L  V  V  M  E  V  V  A  A  M  S  L  E  V  C  L  L  H  Q  Q  L  R  E  V  C  H  L  K  L  L  F  F  L  I  Y  F  E  P  W  R  L  S  T  L  L  R  W  H  H  L  H  L  Q  N  Q  Y  L  S  A  *  R  *  V  T  V  R  Q  F  L  D  Q  L  V  K  N  G  G  N  M  L  P  H  H  N  Q  L  C  R  Q  Q  H  Y  C  R  R  Q  L  R  W  V  Q  Q  Q  P  A  H  R  S  *  G  A  L  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35215" stop="35170"/>
                    <exon start="34707" stop="34262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTAVMSFASSVQNRELRENPVTNSAGAATKQVVEEAAVVASLTGNCSSSCSNGSSSSNVFGSLFASSTASGSLPSQAPVFSDIFRAMAPEHTLEMAPPSSTEPISLGLAMSHSSSIFRPAGQERRQYAPAPQPAMSATALLQKAAQMGAAATSSSFLRGIGVM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="36595" PGL_stop="35880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36595" e_stop="36015"/>
            <exon e_start="35956" e_stop="35880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="36595" e_stop="36015" e_length="581"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36014" i_stop="35957" i_length="58"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35956" e_stop="35880" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36595" stop="36015"/>
              <exon start="35956" stop="35880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCACATTAAATTTCCTCTCTTTCTCTCTATTGATTTCCGAGCCGCCGACTTGCGTTGTCACAACTGCTTCTCATTTTCATCGAGTTTTTCTTCATTACTTTTACTTATAAGCAAACCCATTTACTCGAACTTAGCGACTTTCCCGGCAGAAAGTTCACGCCGGTGATTGACTTTCTGGTGATTTTGGAATCTGGGTTTTTCAGCTAATTTCTATGTTATGGGGATTTGCTATTTTAGCTTGGTTTGATCAAAACTGGTAGTTGGGTGTATGAAAGAAAGAAAAACGAAAAAGCAAGATTGACTGGTAGATACGGCGAAAAGAGAGAAAGTATTGACTCCCCCAAGAAAAGATTGATATCAAAAAGGTTTTTTTAACATAAATGTTCTAAAGATTTGCTTTTTTGAGCAACCCCCCCCCCCCAAAAAAAAAAAAAAAAACATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCTACAGGCTCAGGTGAAGCAAGCGTTTCGTCTTCAGGTAATCAAGTAGTTCCTCTGAAAGAATCAGCCAAGAAGAAACGGAATCTTCCTGGGATGCCAG : ATTTGATTTTCTGTTTTTGGTTGCTTTGATTAGATCCCGATGCAGAGGTTATTGCTTTGTCACCAACAACTTTGCTG</gDNA_template>
            <first_frame> F  S  H  *  I  S  S  L  S  L  Y  *  F  P  S  R  R  L  A  L  S  Q  L  L  L  I  F  I  E  F  F  F  I  T  F  T  Y  K  Q  T  H  L  L  E  L  S  D  F  P  G  R  K  F  T  P  V  I  D  F  L  V  I  L  E  S  G  F  F  S  *  F  L  C  Y  G  D  L  L  F  *  L  G  L  I  K  T  G  S  W  V  Y  E  R  K  K  N  E  K  A  R  L  T  G  R  Y  G  E  K  R  E  S  I  D  S  P  K  K  R  L  I  S  K  R  F  F  *  H  K  C  S  K  D  L  L  F  *  A  T  P  P  P  Q  K  K  K  K  K  H  A  G  R  P  R  *  L  I  R  H  E  R  F  Y  R  L  R  *  S  K  R  F  V  F  R  *  S  S  S  S  S  E  R  I  S  Q  E  E  T  E  S  S  W  D  A  R :   F  D  F  L  F  L  V  A  L  I  R  S  R  C  R  G  Y  C  F  V  T  N  N  F  A  </first_frame>
            <second_frame>  F  H  I  K  F  P  L  F  L  S  I  D  F  R  A  A  D  L  R  C  H  N  C  F  S  F  S  S  S  F  S  S  L  L  L  L  I  S  K  P  I  Y  S  N  L  A  T  F  P  A  E  S  S  R  R  *  L  T  F  W  *  F  W  N  L  G  F  S  A  N  F  Y  V  M  G  I  C  Y  F  S  L  V  *  S  K  L  V  V  G  C  M  K  E  R  K  T  K  K  Q  D  *  L  V  D  T  A  K  R  E  K  V  L  T  P  P  R  K  D  *  Y  Q  K  G  F  F  N  I  N  V  L  K  I  C  F  F  E  Q  P  P  P  P  K  K  K  K  K  N  M  P  A  D  P  D  N  S  S  A  M  N  D  S  T  G  S  G  E  A  S  V  S  S  S  G  N  Q  V  V  P  L  K  E  S  A  K  K  K  R  N  L  P  G  M  P   : D  L  I  F  C  F  W  L  L  *  L  D  P  D  A  E  V  I  A  L  S  P  T  T  L  L </second_frame>
            <third_frame>   F  T  L  N  F  L  S  F  S  L  L  I  S  E  P  P  T  C  V  V  T  T  A  S  H  F  H  R  V  F  L  H  Y  F  Y  L  *  A  N  P  F  T  R  T  *  R  L  S  R  Q  K  V  H  A  G  D  *  L  S  G  D  F  G  I  W  V  F  Q  L  I  S  M  L  W  G  F  A  I  L  A  W  F  D  Q  N  W  *  L  G  V  *  K  K  E  K  R  K  S  K  I  D  W  *  I  R  R  K  E  R  K  Y  *  L  P  Q  E  K  I  D  I  K  K  V  F  L  T  *  M  F  *  R  F  A  F  L  S  N  P  P  P  P  K  K  K  K  K  T  C  R  P  T  Q  I  T  H  P  P  *  T  I  L  Q  A  Q  V  K  Q  A  F  R  L  Q  V  I  K  *  F  L  *  K  N  Q  P  R  R  N  G  I  F  L  G  C  Q  :  I  *  F  S  V  F  G  C  F  D  *  I  P  M  Q  R  L  L  L  C  H  Q  Q  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0097L01.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36237" stop="36015"/>
                    <exon start="35956" stop="35928"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQKGFFNINVLKICFFEQPPPPKKKKKNMPADPDNSSAMNDSTGSGEASVSSSGNQVVPLKESAKKKRNLPGMPDLIFCFWLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 68 chains have been computed
$ 
$ memory statistics:
$ 88776 bytes spliced alignments in total
$ 43 spliced alignments have been stored
$ 2064 bytes was the average size of a spliced alignment
$ 14568 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1821 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 73 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:34:00
-->
