<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:45:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572820" ref_strand="+" ref_description="SGN-E572820 [32033]">
      <seq>tttttccagaaaggtagaatcttggtgttgtttttacagttttttggtatacccatatagaaatctcactgaaatttgcacaaataagatcaagaaagcatttttcagtgggaaacaagaaaagggttggagttgattattcaagattttggtgaaattgggtgttggaaattgatggcatctgctgcaattttctcatcgttgaggatacaaaggtcgccgacactggaagcgttcttggcgccggtggatctgacagatgttgggttgttgcaaacactaacggcgttatcttctgagctgatttctgcatattcaggtaaaaagctgccgttttatcagcggaagaattgtaagtctttgttaaggaaaattcaagtgttttctgttctcttggaatgtcttcttgagaataacaagaacagaagtaggggttcttcagatttgccgtttacagcttttttgtgcttcaaggaattgtatttattgctttaccggtcgaaaatcttgcttgattattgctctcattccagtaagttgtggctgttgctacaaaaccattcgatttcaggtcatttccatgatttgaaccaagaaatctcgaaccttttggatgttttccccttacaggatttaacaagttacctgaagatgtcagggaacaggttgagtcgttgaagaaacaagcaagaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="5454" stop="6755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5753" g_stop="6455" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E572820" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5753" e_stop="6455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCAGAAAGGTAGAATCTTGGAGTTGTTTTTACAGTTTTTTTTTTGGTATACCCATATAGATATCTCACTGAAATATTGCAAAAATAAGATCAAGAAAGCATTTTTCAGTGGGAAACAAGAAAAGGGCTGGAGTTGATTTTTCAAGATTTTGGTGAAATTGGGTGTGGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGAGAAGACAAAGGTCGCCGACACTGGAAGCGTTCTTGGCGCCGGTGGATCTGACAGATGTTGGGTTGTTGCAAACTTTAACGGCGTTATCTTCTGAGCTGATTTCTGCATATTCAGGTAAAAGGCTGCCGTTTTATCAGCGGAAGAATTGTAAGTCTTTGTTAAGGAAAATTCAAGTATTTTCTGTTCTCTTGGAGTGTCTTCTTGAGAATAAAAAGAACAGAAGTAGTGGTTCTTCAGATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAGTTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGATTATTGCTCTTATTCAAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCAGGTCATTTCCATGATTTGAACCAAGAAATCTCGACCCTTTTGGATGTTTTCCCCTTAAAGGATTTAAAAAATTTATCTGAAGATGTTAGGGAACAGGTTGAGTTGTTGAAGAAACAAGCAAGAAAATC</genome_strand>
        <mrna_strand>TTTTTCCAGAAAGGTAGAATCTTGGTGTTGTTTTTACAG----TTTTTTGGTATACCCATATAGAAATCTCACTGAAAT-TTGCACAAATAAGATCAAGAAAGCATTTTTCAGTGGGAAACAAGAAAAGGGTTGGAGTTGATTATTCAAGATTTTGGTGAAATTGGGTGTTGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGAGGATACAAAGGTCGCCGACACTGGAAGCGTTCTTGGCGCCGGTGGATCTGACAGATGTTGGGTTGTTGCAAACACTAACGGCGTTATCTTCTGAGCTGATTTCTGCATATTCAGGTAAAAAGCTGCCGTTTTATCAGCGGAAGAATTGTAAGTCTTTGTTAAGGAAAATTCAAGTGTTTTCTGTTCTCTTGGAATGTCTTCTTGAGAATAACAAGAACAGAAGTAGGGGTTCTTCAGATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAATTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGATTATTGCTCTCATTCCAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCAGGTCATTTCCATGATTTGAACCAAGAAATCTCGAACCTTTTGGATGTTTTCCCCTTACAGGATTT-AACAAGTTACCTGAAGATGTCAGGGAACAGGTTGAGTCGTTGAAGAAACAAGCAAGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212250" ref_strand="+" ref_description="SGN-E212250 [cLEC-75-H5]">
      <seq>ttgaaattgttttctttcttgaatgagtttgagaatggtggtgttcctgactatgctcagttgtactctttttttgtggaaaaattggggatttgtaatcctaggagttgcagagttgagattgagtttttggaggagcagattgtgaaccatgaaggagatattgagcccacatcctcagttctcaacgggtttgtggcgttgatgcgatactgcaggtttttgctatttggctttgaagaggatgatatggggttgagattgggtaagcataagaagccgaagagagggctgattagtcaagagattgcagagacattcatttctgtaccaaaggacttctggtgtccgatatcgttggatttgatgagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="6193" stop="7167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6493" g_stop="6867" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E212250" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6493" e_stop="6867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTTGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGAT</genome_strand>
        <mrna_strand>TTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTTGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGGTGTCCGATATCGTTGGATTTGATGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248309" ref_strand="+" ref_description="SGN-E248309 [cLEG-1-I11]">
      <seq>gggtttgtggcgttgatgcgatactgcaggtttttgctatttggctttgaagaggatgatatggggttgagattgggtaagcataagaagccgaagagagggctgattagtcaagagattgcagagacattcatttctgtaccaaaggacttctgttgtccgatatcgttggatttgatgagggatccagttattgtggcaacagggcagacatatgatcgagcttctatatcgaggtggatggaggagggtcactgtacttgcccaaagacagggcagttgcttgatcatacccggcttgtgccaaacagggctcttaggaatttgattatgcattggtgtgctgctcgcaaaattccctatgaccctctggagagtggggatccatgtgttgaatgttttccatcagcttcacctagcagggctgcactagaagctaataaagccacagcagctcttctgattaagcagctagagagtgggacgcagattgcaaaaactattgctgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="6382" stop="7586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6682" g_stop="7286" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E248309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6682" e_stop="7286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATC</genome_strand>
        <mrna_strand>GGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262531" ref_strand="+" ref_description="SGN-E262531 [cLEG-63-K11]">
      <seq>gttttccatcagcttcacctagcagggctgcactagaagctaataaagccacagcagctcttctgattaagcagctagagagtgggacgcagattgcaaaaactattgctgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcgggtctgttgcgagaaggttctcccagagggaagaaagatgcagtaactgctctatttaatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="6779" stop="7892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7079" g_stop="7592" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E262531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7079" e_stop="7592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATC</genome_strand>
        <mrna_strand>GTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258784" ref_strand="+" ref_description="SGN-E258784 [cLEG-50-B17]">
      <seq>ttttccatcagcttcacctagcagggctgcactagaagctaataaagccacagcagctcttctgattaagcagctagagagtgggacgcagattgcaaaaactattgctgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="6780" stop="7763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7080" g_stop="7463" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E258784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7080" e_stop="7463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCT</genome_strand>
        <mrna_strand>TTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211255" ref_strand="+" ref_description="SGN-E211255 [cLEC-70-N16]">
      <seq>tgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcgggtctgttgcgagaaggttctcccagagggaagaaagatgcagtaactgctctatttaatttatccacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgctgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaatggcagtagcagggctcattgcaatgatgcgatgtgggacaccaagagggaaggagaatgctgttgctgcattacttgaattatgcccgcgtggtggagcagctgctactgagaaggtcttgaangcgccgtcattagcaagtttacttcagacgttgctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="6888" stop="8214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7188" g_stop="7914" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E211255" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7188" e_stop="7914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTT</genome_strand>
        <mrna_strand>TGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCCGCGTGGTGGAGCAGCTGCTACTGAGAAGGTCTTGAANGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209534" ref_strand="+" ref_description="SGN-E209534 [cLEC-54-L21]">
      <seq>agaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcgggtctgttgcgagaaggttctcccagagggaagaaagatgcagtaactgctctatttaatttatccacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="6926" stop="7967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7226" g_stop="7667" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E209534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7226" e_stop="7667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGA</genome_strand>
        <mrna_strand>AGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459753" ref_strand="+" ref_description="SGN-E459753 [cPRO-28-H14]">
      <seq>ttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggtcgaattattgatgaagtagggtgtctggcgttgatagttggagtgttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattgttcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcaggtctgttgcgagaaggttctccccgagggaagaaggatgcagtaactgctctatttaatttgtctacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgccgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaacggcagtagcagggctcatttcaatgatgcgatgtgggacaccaagagggaaagagaatgcagttgctgcattgcttgaattatgccgtggtggtggagcagctgctactgagagggtcttgaaggcgccgtcattagcaagtttacttcagacattgctctttacaggaaacaagcgcgccaggaggaaagcagcatcgcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="6981" stop="8256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7281" g_stop="7956" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E459753" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7281" e_stop="7956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCT</genome_strand>
        <mrna_strand>TTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGTCGAATTATTGATGAAGTAGGGTGTCTGGCGTTGATAGTTGGAGTGTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTGTTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCAGGTCTGTTGCGAGAAGGTTCTCCCCGAGGGAAGAAGGATGCAGTAACTGCTCTATTTAATTTGTCTACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCCGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAACGGCAGTAGCAGGGCTCATTTCAATGATGCGATGTGGGACACCAAGAGGGAAAGAGAATGCAGTTGCTGCATTGCTTGAATTATGCCGTGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACATTGCTCTTTACAGGAAACAAGCGCGCCAGGAGGAAAGCAGCATCGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406316" ref_strand="+" ref_description="SGN-E406316 [PPI-3-M6]">
      <seq>gaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggtcgaattattgatgaagtagggtgcctggcattgatagttggagtgttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattgttcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcaggtctgttgcgagaaggttcttctcgagggaagaaggatgcagtaactgctctatttaatttgtctacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgccgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaacggcagtagcagggctcattgcaatgatgcgatgtgggacaccaagagggaaagagaatgcagttgctgcattgcttgaattatgccgtggtggtggagcagctgctactgagagggtcttgaaagcgccgtcattagcaagtttacttcagacattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="7006" stop="8209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7306" g_stop="7909" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E406316" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7306" e_stop="7909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGC</genome_strand>
        <mrna_strand>GAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGTCGAATTATTGATGAAGTAGGGTGCCTGGCATTGATAGTTGGAGTGTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTGTTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCAGGTCTGTTGCGAGAAGGTTCTTCTCGAGGGAAGAAGGATGCAGTAACTGCTCTATTTAATTTGTCTACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCCGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAACGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAAGAGAATGCAGTTGCTGCATTGCTTGAATTATGCCGTGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAAGCGCCGTCATTAGCAAGTTTACTTCAGACATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420477" ref_strand="+" ref_description="SGN-E420477 [STM-31-E8]">
      <seq>gaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggtcgaattattgatgaagtagggtgcctggcattgatagttggagtgttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattgttcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcaggtctgttgcgagaaggttcttctcgagggaagaaggatgcagtaactgctctatttaatttgtctacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgccgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaacggcagtagcagggctcattgcaatgatgcgatgtgggacaccaagagggaaagagaatgcagttgctgcattgcttgaattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="7006" stop="8136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7306" g_stop="7836" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E420477" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7306" e_stop="7836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGC</genome_strand>
        <mrna_strand>GAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGTCGAATTATTGATGAAGTAGGGTGCCTGGCATTGATAGTTGGAGTGTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTGTTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCAGGTCTGTTGCGAGAAGGTTCTTCTCGAGGGAAGAAGGATGCAGTAACTGCTCTATTTAATTTGTCTACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCCGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAACGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAAGAGAATGCAGTTGCTGCATTGCTTGAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574246" ref_strand="+" ref_description="SGN-E574246 [33684]">
      <seq>tatgttctctctttctttgtcgcgtttatatttcaatgaaagaatttttgaatattacaggcaaaactaagaacaaaagatgaatggtgataagtaccccctcctataatactggaactgaaatggacatggacactgagacatcaccaggaaaagttgaatccctagctgcagctgagtttccagaaaatgcatatcctacaccaaacccgctataatgaactgatgcatgctcacaccgttggaatactctagcaagcgatgctgctttcctccttggcgcgctttgttcctgtaaagagcaatgtctgaagtaaacttgctaatgacggcgccttcaagaccctctcagtagcagctgctccaccaccacggcataattcaagcaatgcagcaactgcattctctttccctcttggtgtcccacatcgcatcattgcaatgagccctgctactgccgtttcctcattgccaacagctgtagcaccaacttgctgcctaacaatcagcgccaatgcaccagcagcttcttcggcaacaccttcacttcccaaagctccaactagagcagtaacagctccagactctatcatcctcggcacaattatctgtgtgggtagacaaattaaatagagcagttactgcatccttcttccctcgagaagaaccttctcggaacagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="8503" stop="7230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8207" g_stop="7528" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E574246" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8207" e_stop="7528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATTTCTCTCTTTCTTTGTCGCGTTTATATTTCAATGAAAGAATTTTTGAATATTACAAGTAAAACTAAGAACAAAAGATGAATGGTGGTAAGTA---CC-CCTATAATACTGGAACTGAAATGGACATGGACACTGAGACATCACCAGGAAAAGTTGAATCCCTAGCAGCAGCTGAGTTTCCAGCAAATGCATATCCTACACCAAACCCACTATAATGAACTGCTGCATGCTCACACCGTTGGAATACTCTAGCAAGCGATGCTGCTTTCCTCCTT-GCGCGCTTTGTTCCTGTAAAGAGCAACGTCTGAAGTAAACTTGCTAATGACGGCGCCTTCAAGACCCTCTCAGTAGCAGCTGCTCCACCACCGCGGCATAATTCAAGTAATGCAGCAACAGCATTCTCCTTCCCTCTTGGTGTCCCACATCGCATCATTGCAATGAGCCCTGCTACTGCCATTTCCTCATTGCCAACAGCTGTAGCACCAACTTGCTGCCTAACAATCAGCGCCAATGCACCAGCAGCTTCTTCAGCAACACCTTCACTTCCCAAAGCTCCAACTAGAGCAGTAACAGCTCCAGACTCTATCATCCTC-GCACAATTATCTGTGTGGGTGGATAAATTAAATAGAGCAGTTACTGCATCTTTCTTCCCTCTGGGAGAACCTTCTCGCAACAGACC</genome_strand>
        <mrna_strand>TATG--TTCTCTCTTTCTTTGTCGCGTTTATATTTCAATGAAAGAATTTTTGAATATTACAGGCAAAACTAAGAACAAAAGATGAATGGTGATAAGTACCCCCTCCTATAATACTGGAACTGAAATGGACATGGACACTGAGACATCACCAGGAAAAGTTGAATCCCTAGCTGCAGCTGAGTTTCCAGAAAATGCATATCCTACACCAAACCCGCTATAATGAACTGATGCATGCTCACACCGTTGGAATACTCTAGCAAGCGATGCTGCTTTCCTCCTTGGCGCGCTTTGTTCCTGTAAAGAGCAATGTCTGAAGTAAACTTGCTAATGACGGCGCCTTCAAGACCCTCTCAGTAGCAGCTGCTCCACCACCACGGCATAATTCAAGCAATGCAGCAACTGCATTCTCTTTCCCTCTTGGTGTCCCACATCGCATCATTGCAATGAGCCCTGCTACTGCCGTTTCCTCATTGCCAACAGCTGTAGCACCAACTTGCTGCCTAACAATCAGCGCCAATGCACCAGCAGCTTCTTCGGCAACACCTTCACTTCCCAAAGCTCCAACTAGAGCAGTAACAGCTCCAGACTCTATCATCCTCGGCACAATTATCTGTGTGGGTAGACAAATTAAATAGAGCAGTTACTGCATCCTTCTTCCCTCGAGAAGAACCTTCTCGGAACAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595449" ref_strand="-" ref_description="SGN-E595449 [38723]">
      <seq>acagctgttggcaatgaggaaacgccattagcagggctcatgttcaatgatgcgatgtgggacaccaagagggaaagagaatccagttcctgcattgcttgaattatgcccgtggtggtggagcagctgctactgagagggtcttgaaggcgccgtcattagcaagtttacttcagacattgctctttacaggaacaaagcgcgcaaggaggaaagcagcatcgcttgctagagtattccaacggtgtgagcatgcatcagttcattatagcgggtttggtgtaggatatgcattttctgggaactcagctgcagctagggattcaacttttcctggtgatgtctcagtgtccatgtccatttcagttccagtattataggagggggtacttatcaccattcatcttttgttcttagttttgcctgtaatattcaaaaattctttcattgatatataaacgcgacaaagaaagagagaaaaaaaaaagaaaaaactccgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="7429" stop="8507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7729" g_stop="8201" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="494"/>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E595449" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595449" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7729" e_stop="8201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCAT-TGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATG-CCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTAT---A-GGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAA</genome_strand>
        <mrna_strand>ACAGCTGTTGGCAATGAGGAAACGCCATTAGCAGGGCTCATGTTCAATGATGCGATGTGGGACACCAAGAGGGAAAGAGAATCCAGTTCCTGCATTGCTTGAATTATGCCCGTGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACATTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCATCAGTTCATTATAGCGGGTTTGGTGTAGGATATGCATTTTCTGGGAACTCAGCTGCAGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGAGGGGGTACTTATCACCATTCATCTTTTGTTCTTAGTTTTGCCTGTAATATTCAAAAATTCTTTCATTGATATATAAACGCGACAAAGAAAGAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219184" ref_strand="+" ref_description="SGN-E219184 [cLEL-11-B13](-)">
      <seq>agcagctgctactgaaagggtcttgaaggcgccgtcattagcaagtttacttcagacgttgctctttacaggaacaaagcgcgcaaggaggaaagcagcatcgcttgctagagtattccaacggtgtgagcatgcagcagttcattatagtgggtttggtgtaggatatgcatttgctggaaactcagctgctgctagggattcaacttttcctggtgatgtctcagtgtccatgtccatttcagttccagtattataggggtacttaccaccattcatcttttgttcttagttttacttgtaatattcaaaaattctttcattgaaatataaacgcgacaaagaaagagagaaatcataggaataccacaaaattcatgtgttcttagcattttgcagaatacagtgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="7548" stop="27540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7848" g_stop="8262" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8263" i_stop="8715" i_length="453">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8716" g_stop="8729" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="429" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E219184" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7848" e_stop="8262"/>
          <exon e_start="8716" e_stop="8729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGTGTTTCAAAGTCTGTTCGCGATTCGCTTATCTGAGATGTTAGTGAATAATAGGTTGGTTACAATTCTGACCATGTCCGTTAGGATTCCATCTTTCTTTTTGTATGACCATGGCCATTTTACCTTTCCTCAACTTTAATCTGTTAAGTTAAATGGTCTGCTGAACATGATATAGATGGTTCTCCAACTTGATAACTGAAACAAACCTTTGTAACTGAGTAAGACATTGAGTTAGTTACATTGTAACTTTCAAATATAGAGAAATTTTACCAATTCCTAATGTAAGAATTAGTAGATGGACACCTCTCTTTTTAGTCAAATTTGTTTTTTTCTTTGTTCAATTGTTTGGTGTGTAAGAAGATAATGTATGACTTTGCTTATGCAAACATTTAGTGGTGTTCAAGCTCTGTTCAACTCTCTAATAGGATATCAATGTTGACTTTGAATAAATCCACTTGGAAAAGGAAAACACCCCAAA</genome_strand>
        <mrna_strand>AGCAGCTGCTACTGAAAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGTGTTTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219613" ref_strand="+" ref_description="SGN-E219613 [cLEL-11-B14](-)">
      <seq>accaaagcgcgcaaggaggaaagcagcatcgcttgctagagtattccaccggtgtgagcatgcagcagttcattatagtgggtttggtgtaggatatgcatttgctggaaaactcagctgctgctagggattcaacttttcctggtgatgtctcagtgtccatgtccatttcagttccagtattataggggtacttaccaccattcatcttttgttcttagttttacttgtaatattcaaaaattctttcattgaaatataaacgcgacaaagaaagagagaaatcataggaataccacaaaattcatgtgttcttagcattttgcagaaaacagtgcctcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="7622" stop="8559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7920" g_stop="8254" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="358"/>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E219613" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7920" e_stop="8254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGG-AAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGT</genome_strand>
        <mrna_strand>ACCAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCACCGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAAAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699938" ref_strand="+" ref_description="SGN-E699938 [FA11CF04]">
      <seq>ctccccttttaatttcattttcttggttcaatttgctttctcttttgctaatcaatgtgtatgttttgggggttttctccttaagtcttgatggaaatgatgactacatttcagctgttggagattcagggatgcgacgcgacgggctaagagtggccatacaggcattaaatcaatgcaatgaggttggagaagaaaccccaaaaatgggaagcccaagggctgctgattgctttgatgttcaaaacaaagcctctgctcagcaacagaatccaaacaggctgctacaacataaagtgactgaggaagataacaagttaggcataggaaaatcatttccaggactgacgaaacgagcgttgaacaacgtagacctttatgcagcagagaaagaagtatacttgggatcaaaatgtcaagttgatgacaagccaaatccatggcaattctggacgatcaggcttaagagtggtaacatggatactcgtgctggtaaatgcccgaaaaatggacacaaaataggtccattcgatccttctggcgaatttgaatgttttggcaaaggatgtatgaatcagccattgatgtaccacaattacacaactttacaagggacaacccttaaaggggaatttcatggaacctgggatttaaatgcctggttcgagtgcaaacatgaacccctctttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="20629" stop="19253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20335" g_stop="20066" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20065" i_stop="19976" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19975" g_stop="19553" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="694" r_length="424" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E699938" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20335" e_stop="20066"/>
          <exon e_start="19975" e_stop="19553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTAGAATTTCATTTTCTTGGTTCAATTTGCTTTCTCTTTTGCTAATCAATGTGTATGTTTTGGGGGTTTTCTCCTTAAGTCTTGATGGAAATGATGACTACATTTCAGCTGTTGGAGATTCAGGGATGCGACGCGACGGGCTAAGAGTGGCCATAGAGGCATTAAATCAATGCAATGAGGTTGGAGAAGAAACCCCAAAAATGGGAAGCCCAAGGGCTGCTGATTGCTTTGATGTTCAAAACAAAGCCTCTGCTCAGCAACAGAGTGAGTTGAATTTCTCTGTTTTCTTGATTTTGTTATGTTTGAAATGGTTGGTGTTTTTATATGAGAGAATTTGTTGTGTCTGTGGTGCAGATCCAAACAGGCTGCTACAACATAAAGTGACTGAGGAAGATAACAAGTTAGGCATAGGAAAATCATTTCCAGGACTGACGAAACGAGCGTTGAACAACGTAGACCTTTATGCAGCAGAGAAAGAAGTATACTTGGGATCAAAATGTCAAGTTGATGACAAGCCAAATCCATGGCAATTCTGGACGATCAGGCTTAAGAGTGGTAACATGGATACTCGTGCTGGTAAATGCCCGAAAAATGGACACAAAGTAGGTCCATTCGATCCTTCTGGCGAATTTGAATGTTTTGGCAAAGGATGTATGAATCAGCCATTGATGTACCACAATTACACAACTTTACAAGGGACAACCCTTAAAGGGGAATTTCATGGAACATGGGATTTGAATG-CTGGTTCGAGTGCAAACATGAACACCTCTTTTTATT</genome_strand>
        <mrna_strand>CTCCCCTTTTAATTTCATTTTCTTGGTTCAATTTGCTTTCTCTTTTGCTAATCAATGTGTATGTTTTGGGGGTTTTCTCCTTAAGTCTTGATGGAAATGATGACTACATTTCAGCTGTTGGAGATTCAGGGATGCGACGCGACGGGCTAAGAGTGGCCATACAGGCATTAAATCAATGCAATGAGGTTGGAGAAGAAACCCCAAAAATGGGAAGCCCAAGGGCTGCTGATTGCTTTGATGTTCAAAACAAAGCCTCTGCTCAGCAACAGA..........................................................................................ATCCAAACAGGCTGCTACAACATAAAGTGACTGAGGAAGATAACAAGTTAGGCATAGGAAAATCATTTCCAGGACTGACGAAACGAGCGTTGAACAACGTAGACCTTTATGCAGCAGAGAAAGAAGTATACTTGGGATCAAAATGTCAAGTTGATGACAAGCCAAATCCATGGCAATTCTGGACGATCAGGCTTAAGAGTGGTAACATGGATACTCGTGCTGGTAAATGCCCGAAAAATGGACACAAAATAGGTCCATTCGATCCTTCTGGCGAATTTGAATGTTTTGGCAAAGGATGTATGAATCAGCCATTGATGTACCACAATTACACAACTTTACAAGGGACAACCCTTAAAGGGGAATTTCATGGAACCTGGGATTTAAATGCCTGGTTCGAGTGCAAACATGAACCCCTCTTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236982" ref_strand="+" ref_description="SGN-E236982 [cLEL-7-K6](-)">
      <seq>agcgcatcgcttccaaacttttagaggttgatcctcgcgacagtgctggttatgttcaactatcaaatgcccttgcatctatggggagatgggatgattgtgagggaagtgcgtagaaagatgaggagcgaggggataactaaagagcctggttgtagtatgattgaagttgatggagttgttcatgagttcttggctggtgaagggataatactgtaacaaggacaaaatacttcttgtagcaactgacagatgatccagtctggtgaagaatggggtttgtctttctttatgaaaaccaaactgttgcttatattgatagaaatggctttttttgtaacagaagcaaacagtttgtggtaaactataacaagcagctaagatcctagaagcagcaataagcaatgtctgtaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="30626" stop="29609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30326" g_stop="29923" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="434"/>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E236982" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30326" e_stop="29923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCATCGCTACCAAACTTTTAGAGGTTGATCCTCGCGACAGTGCTGGTTATGTTCAACTATCAAATGCCCTTGCATCTATGGGGAGATGGGATGA-TGTGAGGGAAGTGCGTAGAAAGATGAGGAGCGAGGGGATAACTAAAGAGCCTGGTTGTAGTATGATTGAAGTTGATGGAGTTGTTCATGAGTTCTTGGCTGGTGAA-GGATAATACTGTAACAAGGACAAAATACTTCTTGTAGCAACTGACAGATGATCCAGTCTGGTGAAGAATGGGGTTTGTCTTTCTTTATGAAAACCAAACTGTTGCTTATATTGATAGAAATGGCTTTTTTTGTAACAGAAGCAAACAGTTTGTGGTAAACTATAACAAGCAGCTAAGATCCTAGAAGCAGCAATAAGCAAT</genome_strand>
        <mrna_strand>AGCGCATCGCTTCCAAACTTTTAGAGGTTGATCCTCGCGACAGTGCTGGTTATGTTCAACTATCAAATGCCCTTGCATCTATGGGGAGATGGGATGATTGTGAGGGAAGTGCGTAGAAAGATGAGGAGCGAGGGGATAACTAAAGAGCCTGGTTGTAGTATGATTGAAGTTGATGGAGTTGTTCATGAGTTCTTGGCTGGTGAAGGGATAATACTGTAACAAGGACAAAATACTTCTTGTAGCAACTGACAGATGATCCAGTCTGGTGAAGAATGGGGTTTGTCTTTCTTTATGAAAACCAAACTGTTGCTTATATTGATAGAAATGGCTTTTTTTGTAACAGAAGCAAACAGTTTGTGGTAAACTATAACAAGCAGCTAAGATCCTAGAAGCAGCAATAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409018" ref_strand="+" ref_description="SGN-E409018 [PPI-12-L2]">
      <seq>ttcagttgatgctcccgaagtacagtcggaaaggaaagatattggcagcaaaaagaatgaaagcaaaccagttgacagtggaaaatattggtggaacatgaagagtgtaaatagcctggcagaacagatggggcatcttactccagcagagaaaacttagtttggtaggttatatcacataatcacaaatgctttattcatgttgttagccttctggcttgttgtatatctagtgtactagtttttttttttaatcagggattagatatacgtgttgatgtataaattgattttgttcttgctgtgcattgcatgatatgagggaaattgagcttctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="33674" stop="32740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33374" g_stop="33040" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E409018" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33374" e_stop="33040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTTGATGCACCCGAAGTACAGTCCGAAAGAAAAGATATTGGTAGCAAAAAGAATGAAAGCAAACCAGTTGACAGTGGAAAATATTGGTGGAACATGAAGAGTGTAAATAGCCTGGCAGAACAGATGGGACATCTTACTCCAGCGGAGAAAACTTAGTTTGGTAGG-T-TAT---AT--T-GCAAATGCTTTATTCATGTTGTTAGCCTTCTGGCTTGTTGTATATCTAGTGTACTAGTTTTTTTTTTCTTATCAGGGATTAGATATACGTGTTGATGTATAAATTGATTTTGTTAATGCTGTGCATTGCATGATATGAGGGAAATCGAGCTTCTGAAAA</genome_strand>
        <mrna_strand>TTCAGTTGATGCTCCCGAAGTACAGTCGGAAAGGAAAGATATTGGCAGCAAAAAGAATGAAAGCAAACCAGTTGACAGTGGAAAATATTGGTGGAACATGAAGAGTGTAAATAGCCTGGCAGAACAGATGGGGCATCTTACTCCAGCAGAGAAAACTTAGTTTGGTAGGTTATATCACATAATCACAAATGCTTTATTCATGTTGTTAGCCTTCTGGCTTGTTGTATATCTAGTGTACTAGTTTTTTTTTT-TAATCAGGGATTAGATATACGTGTTGATGTATAAATTGATTTTGTTCTTGCTGTGCATTGCATGATATGAGGGAAATTGAGCTTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435086" ref_strand="+" ref_description="SGN-E435086 [STM-60-P14]">
      <seq>ttcagttgatgctcccgaagtacagtcggaaaggaaagatattggcagcaaaaagaatgaaagcaaaccagttgacagtggaaaatattggtggaacatgaagagtgtaaatagcctggcagaacagatggggcatcttactccagcagagaaaacttagtttggtaggttatatcacataatcacaaatgctttattcatgttgttagccttctggcttgttgtatatctagtgtactagtttttttttttaatcagggattagatatacgtgttgatgtataaattgattttgttcttgctgtgcattgcatgatatgagggaaattgagcttctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="33674" stop="32740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33374" g_stop="33040" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E435086" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33374" e_stop="33040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTTGATGCACCCGAAGTACAGTCCGAAAGAAAAGATATTGGTAGCAAAAAGAATGAAAGCAAACCAGTTGACAGTGGAAAATATTGGTGGAACATGAAGAGTGTAAATAGCCTGGCAGAACAGATGGGACATCTTACTCCAGCGGAGAAAACTTAGTTTGGTAGG-T-TAT---AT--T-GCAAATGCTTTATTCATGTTGTTAGCCTTCTGGCTTGTTGTATATCTAGTGTACTAGTTTTTTTTTTCTTATCAGGGATTAGATATACGTGTTGATGTATAAATTGATTTTGTTAATGCTGTGCATTGCATGATATGAGGGAAATCGAGCTTCTGAAAA</genome_strand>
        <mrna_strand>TTCAGTTGATGCTCCCGAAGTACAGTCGGAAAGGAAAGATATTGGCAGCAAAAAGAATGAAAGCAAACCAGTTGACAGTGGAAAATATTGGTGGAACATGAAGAGTGTAAATAGCCTGGCAGAACAGATGGGGCATCTTACTCCAGCAGAGAAAACTTAGTTTGGTAGGTTATATCACATAATCACAAATGCTTTATTCATGTTGTTAGCCTTCTGGCTTGTTGTATATCTAGTGTACTAGTTTTTTTTTT-TAATCAGGGATTAGATATACGTGTTGATGTATAAATTGATTTTGTTCTTGCTGTGCATTGCATGATATGAGGGAAATTGAGCTTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344563" ref_strand="+" ref_description="SGN-E344563 [cTOF-14-G1]">
      <seq>ttattagttttttcctttcaatttccaggttttgcaagcccggtccagaagtaaaccggtcgaagaattttaatccggtttaagtcttccattgcggagcaatcgacggcgttgtaatgacttccggcacgaggctaccgacatggaaggagagagagaataataagcggagagagcggcggcggagggcgatcgccgctaagatcttcgccggattaaggatgtatggtaactataagctaccgaagcactgtgataataacgaggtattgaaagctctgtgtaaagaggctggttggattgttgaagaagatggaactacttacagaaagcagggatgcaagccagttacacgcattgatatcggtggttctgtttctgtaagcagttcatcttaccaactcagccctggtgcttcatataatccgagtccggtttcatcatctatccctagcccggtctcatcccattatgttgccaatgtccaaaataattctgatccgaactctcttattccttggcttaagaacctgtcatctggctcatcaccatccttgtctaattttccccatcatctgtgcattcctggaggttctataagtgctnctgtgactccacctttgagctctcccactgccagtactcccagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="41682" stop="46515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41982" g_stop="42313" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42314" i_stop="45896" i_length="3583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45897" g_stop="46215" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="651" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E344563" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41982" e_stop="42313"/>
          <exon e_start="45897" e_stop="46215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAGTTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAGGTAAACTACTTTTTCCTCAAATATCACCATTTGTGCAAATATATAGCAATTAGTAAAGGCGAATTAAGCGGAATATATCTTTTAATTTCTTACTAGTTTTTTTTTGCTTTTGAAGATTACTGCTTCATTTACGCAACGAGAGGTTCGGGTTTAGTAAATTAGTTCTATTTTCATAGCCAAATTTAGAGGAAAAAGCATAAGATTGAAAAGACGAATCATCTCCATAGATTTGTTCTGCTTCGTGTATTTTGTGCACAGTCACAGAAGTCTGAACATTTCACCCAGATGTTAATTGGACGATATTACCCCTGTGTAACTTCTAGGGTCCCACTTTTTACTTTGAATTTGATGGGCTGTATGGACATTTCAGCCTGATTCCAGGGTTTTACCAGTCCTGAGTTTCTAAATCCTGAATCTGCAGTCTATTTATGAAGGGTAGTTTAGTAATCTAATCCTATTGTACAATTGTATATTCATGAAAGTACAACACCTTGATGCATGCTATCAGAATCCAAGTCTCTGAAAAGAAAAATGTTACTCGTCCTTTTTATGTGACACTATTTGACCGAGTATTGAGTTTATAAAAGAAAAGAACTTGAAATATTTGGTTTTTAATATGCAAATATCATTTCTGTGGCTATAGACTTTTGATACTTGTAATTTTAAATACAACATCATGTTTTTGTGACTATACAACTTTTTAAAATTGTAATTTGAACATGTATAGAAGCTTGTTGTTAAGGATAAAATGAGATGAAGTTAAATCATTTCCTTATTTAAAGAAGGGGCATTTTATCAAGTCATCCTGTCGTAGCTTAAAGCATAAAGTAGAGAAGCGACGAATTGTGGTCCCATAGGCGCTTTATAGTCAAATATAATGAGCAGTGGGTTCTATGAATCTCAACTTTGAGGAGTTGGATTAATGTAAGCACTATTGTTTAAGGTATACTGCATCTGAAGTTTGTTGCTATTTTATTTGTAATTTGATTATTATAGAGAAGTGTACTCTTCACTTCTCACTTTTCGCGACAACGCCCATGGACTTTATTGTTCTTTTGTGCTGCTTGCTTTTGAAAACGCGGGGAAGGTGTCATTCTATTTTGGAACATACTAAAAAGGAAAATAGGTTCACTTAAACAATGAGTAATATTTCTTGTGGTCTATTTAAATCCTTGCTGGACAGAACTAAACCACCAATATGAGGAAACAAAAAGACATCAACTCTTTGGTTCCATTATTGTTGTTGGTTCCTTTTTATCTTTATTTTATTCCCATATTTATTTTCCTAATTATAGTTGAGGCTGTAGAGCGTGTGGGGGTATTTTTAGCTGGGTTTATGGTTTTATCATATAGTTGACATTATCATTGGATATGGACACCCTTTCTCAAAAGTTGTTGGAATGGTAGGGTTACAGTGGTATAATATTTTTTACTGCCATCATTCTATGGGTTGTTTTGGCAATAGGGTTTTGTCCAATTTTTATGTGTGTATTTGGATGCTTTTATCATTAACATATAGGACTTTAGTGGTCATATTATTCAAGTCTTGATCAATGGGATGAGAGAGTGGACCCACATAACATGATTGCTATGGCTGAAAGTTGAAAAACAGCTATTTGAGAATACGCAAGATAATGGCAATAAGGATTTTGGATTTTTTTTTCCAACTAGCCGTCAAGTTGGGCCTAAATTAGGAAATTTAAAGGCCAAGAATAGATGTGGTTGGGCAGATAAATGGTTTTAAATGGTTACTACAGTAGGAGTTTAAAACATGGAGTTCGAAATAATTCGGTACAAGTTGAAGATTGCTTTACGAAGATAGACTTGGCTCTTTTTGGACAAGAGAATACTCTTCATCTTGATGCGGGTAATTTGGCTTTTTCACATACATCGTTAGCCATTTCAAGCTACTGAAAATCTTGTGTTGGGGGAAAATAATGCACTGAAATGTTTAATTTAATAATCCACAAGTCTCAATTTAATATTTCTAGTTTGACAGATGCATCTATTAGATTTAGGGACAATATTTAAATATTTGAATTGTCCTAATTAAAAAAAAAAGAGTTGAACATTTGAATTGTTTATGGATTATTAGTTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAAGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCTACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGCGGTCATGTAAAATGAACAATTTTAAGCTTTAAAAAGATCTGGAGACCTCGTTAATCATATAATCTTTCAACTCAGGGCATTGCAAATTTTAGTTCTCTTTCTGCTATTATAGCATAGTTTTGGGGAAGGGTTTGCTATTAGTATTATTATTTGATTTGCCCCTTTATTGCTGCTTATCATTTGTTCTCTTCAGCAGGGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGA</genome_strand>
        <mrna_strand>TTATTAGTTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTNCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600476" ref_strand="+" ref_description="SGN-E600476 [53488]">
      <seq>gttttttccctttctatttccaggtttggcaagcccggtccagaagtaaaccggtcgaagaattttaatccggtttaagtcttctattgcggagtattcggcggcgttgtaatgacttccggcacgaggctaccgacatggaaggagagagagaataataagcggagagagcggcggcggagggcgatcgccgctaagatcttcgccggattaaggatgtatggtaattataagctcccgaagcactgtgataataacgaggtattgaaagcgctgtgtaaagaggctggttggattgttgaagaagatggaactacttacagaaagggatgcaagccagttgaacgcatggatatcggtggttctgtctctgtaagcccttgttcatcttaccaactgagccctggtgcttcatataatccgagtccagtttcatcatctatccctagcccgatctcatcccattatgtttccaatgtccaaaataattctgatcccaactctcttattccttggcttaagaacctgtcatctggctcatcaccatcctcgtctaagtttccccatcatctgtgcattcctggaggttctataagtgctcctgtgactccacctttgagctctcccactgccagtactcctaggatgaatgataattgggaaaatcccacggccaactctacatggatacagcagcattatccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="41688" stop="46576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41988" g_stop="42313" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42314" i_stop="45899" i_length="3586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45900" g_stop="46276" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="707" r_length="380" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E600476" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41988" e_stop="42313"/>
          <exon e_start="45900" e_stop="46276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTCC-TTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAGGTAAACTACTTTTTCCTCAAATATCACCATTTGTGCAAATATATAGCAATTAGTAAAGGCGAATTAAGCGGAATATATCTTTTAATTTCTTACTAGTTTTTTTTTGCTTTTGAAGATTACTGCTTCATTTACGCAACGAGAGGTTCGGGTTTAGTAAATTAGTTCTATTTTCATAGCCAAATTTAGAGGAAAAAGCATAAGATTGAAAAGACGAATCATCTCCATAGATTTGTTCTGCTTCGTGTATTTTGTGCACAGTCACAGAAGTCTGAACATTTCACCCAGATGTTAATTGGACGATATTACCCCTGTGTAACTTCTAGGGTCCCACTTTTTACTTTGAATTTGATGGGCTGTATGGACATTTCAGCCTGATTCCAGGGTTTTACCAGTCCTGAGTTTCTAAATCCTGAATCTGCAGTCTATTTATGAAGGGTAGTTTAGTAATCTAATCCTATTGTACAATTGTATATTCATGAAAGTACAACACCTTGATGCATGCTATCAGAATCCAAGTCTCTGAAAAGAAAAATGTTACTCGTCCTTTTTATGTGACACTATTTGACCGAGTATTGAGTTTATAAAAGAAAAGAACTTGAAATATTTGGTTTTTAATATGCAAATATCATTTCTGTGGCTATAGACTTTTGATACTTGTAATTTTAAATACAACATCATGTTTTTGTGACTATACAACTTTTTAAAATTGTAATTTGAACATGTATAGAAGCTTGTTGTTAAGGATAAAATGAGATGAAGTTAAATCATTTCCTTATTTAAAGAAGGGGCATTTTATCAAGTCATCCTGTCGTAGCTTAAAGCATAAAGTAGAGAAGCGACGAATTGTGGTCCCATAGGCGCTTTATAGTCAAATATAATGAGCAGTGGGTTCTATGAATCTCAACTTTGAGGAGTTGGATTAATGTAAGCACTATTGTTTAAGGTATACTGCATCTGAAGTTTGTTGCTATTTTATTTGTAATTTGATTATTATAGAGAAGTGTACTCTTCACTTCTCACTTTTCGCGACAACGCCCATGGACTTTATTGTTCTTTTGTGCTGCTTGCTTTTGAAAACGCGGGGAAGGTGTCATTCTATTTTGGAACATACTAAAAAGGAAAATAGGTTCACTTAAACAATGAGTAATATTTCTTGTGGTCTATTTAAATCCTTGCTGGACAGAACTAAACCACCAATATGAGGAAACAAAAAGACATCAACTCTTTGGTTCCATTATTGTTGTTGGTTCCTTTTTATCTTTATTTTATTCCCATATTTATTTTCCTAATTATAGTTGAGGCTGTAGAGCGTGTGGGGGTATTTTTAGCTGGGTTTATGGTTTTATCATATAGTTGACATTATCATTGGATATGGACACCCTTTCTCAAAAGTTGTTGGAATGGTAGGGTTACAGTGGTATAATATTTTTTACTGCCATCATTCTATGGGTTGTTTTGGCAATAGGGTTTTGTCCAATTTTTATGTGTGTATTTGGATGCTTTTATCATTAACATATAGGACTTTAGTGGTCATATTATTCAAGTCTTGATCAATGGGATGAGAGAGTGGACCCACATAACATGATTGCTATGGCTGAAAGTTGAAAAACAGCTATTTGAGAATACGCAAGATAATGGCAATAAGGATTTTGGATTTTTTTTTCCAACTAGCCGTCAAGTTGGGCCTAAATTAGGAAATTTAAAGGCCAAGAATAGATGTGGTTGGGCAGATAAATGGTTTTAAATGGTTACTACAGTAGGAGTTTAAAACATGGAGTTCGAAATAATTCGGTACAAGTTGAAGATTGCTTTACGAAGATAGACTTGGCTCTTTTTGGACAAGAGAATACTCTTCATCTTGATGCGGGTAATTTGGCTTTTTCACATACATCGTTAGCCATTTCAAGCTACTGAAAATCTTGTGTTGGGGGAAAATAATGCACTGAAATGTTTAATTTAATAATCCACAAGTCTCAATTTAATATTTCTAGTTTGACAGATGCATCTATTAGATTTAGGGACAATATTTAAATATTTGAATTGTCCTAATTAAAAAAAAAAGAGTTGAACATTTGAATTGTTTATGGATTATTAGTTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAAGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCTACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGCGGTCATGTAAAATGAACAATTTTAAGCTTTAAAAAGATCTGGAGACCTCGTTAATCATATAATCTTTCAACTCAGGGCATTGCAAATTTTAGTTCTCTTTCTGCTATTATAGCATAGTTTTGGGGAAGGGTTTGCTATTAGTATTATTATTTGATTTGCCCCTTTATTGCTGCTTATCATTTGTTCTCTTCAGCAGGGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAG--C-AGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTT</genome_strand>
        <mrna_strand>GTTTTTTCCCTTTCTATTTCCAGGTTTGGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCTATTGCGGAGTATTCGGCGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAATTATAAGCTCCCGAAGCACTGTGATAATAACGAGGTATTGAAAGCGCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAGTTGAACGCATGGATATCGGTGGTTCTGTCTCTGTAAGCCCTTGTTCATCTTACCAACTGAGCCCTGGTGCTTCATATAATCCGAGTCCAGTTTCATCATCTATCCCTAGCCCGATCTCATCCCATTATGTTTCCAATGTCCAAAATAATTCTGATCCCAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTCGTCTAAGTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCTAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAGCAGCATTATCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282893" ref_strand="+" ref_description="SGN-E282893 [cLER-15-D12]">
      <seq>ttttttcctttcaatttccaggttttgcaagcccggtccagaagtaaaccggtcgaagaattttaatccggtttaagtcttccattgcggagcaatcgacggcgttgtaatgacttccggcacgaggctaccgacatggaaggagagagagaataataagcggagagagcggcggcggagggcgatcgccgctaagatcttcgccggattaaggatgtatggtaactataagctaccgaagcactgtgataataacgaggtattgaaagctctgtgtaaagaggctggttggattgttgaagaagatggaactacttacagaaagggatgcaagccagttacacgcattgatatcggtggttctgtttctgtaagcagttcatcttaccaactcagccctggtgcttcatataatccgagtccggtttcatcatctatccctagcccggtctcatcccattatgttgccaatgtccaaaataattctgatccgaactctcttattccttggcttaagaacctgtcatctggctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="41689" stop="46409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41989" g_stop="42313" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42314" i_stop="45899" i_length="3586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45900" g_stop="46109" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="535" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E282893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41989" e_stop="42313"/>
          <exon e_start="45900" e_stop="46109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAGGTAAACTACTTTTTCCTCAAATATCACCATTTGTGCAAATATATAGCAATTAGTAAAGGCGAATTAAGCGGAATATATCTTTTAATTTCTTACTAGTTTTTTTTTGCTTTTGAAGATTACTGCTTCATTTACGCAACGAGAGGTTCGGGTTTAGTAAATTAGTTCTATTTTCATAGCCAAATTTAGAGGAAAAAGCATAAGATTGAAAAGACGAATCATCTCCATAGATTTGTTCTGCTTCGTGTATTTTGTGCACAGTCACAGAAGTCTGAACATTTCACCCAGATGTTAATTGGACGATATTACCCCTGTGTAACTTCTAGGGTCCCACTTTTTACTTTGAATTTGATGGGCTGTATGGACATTTCAGCCTGATTCCAGGGTTTTACCAGTCCTGAGTTTCTAAATCCTGAATCTGCAGTCTATTTATGAAGGGTAGTTTAGTAATCTAATCCTATTGTACAATTGTATATTCATGAAAGTACAACACCTTGATGCATGCTATCAGAATCCAAGTCTCTGAAAAGAAAAATGTTACTCGTCCTTTTTATGTGACACTATTTGACCGAGTATTGAGTTTATAAAAGAAAAGAACTTGAAATATTTGGTTTTTAATATGCAAATATCATTTCTGTGGCTATAGACTTTTGATACTTGTAATTTTAAATACAACATCATGTTTTTGTGACTATACAACTTTTTAAAATTGTAATTTGAACATGTATAGAAGCTTGTTGTTAAGGATAAAATGAGATGAAGTTAAATCATTTCCTTATTTAAAGAAGGGGCATTTTATCAAGTCATCCTGTCGTAGCTTAAAGCATAAAGTAGAGAAGCGACGAATTGTGGTCCCATAGGCGCTTTATAGTCAAATATAATGAGCAGTGGGTTCTATGAATCTCAACTTTGAGGAGTTGGATTAATGTAAGCACTATTGTTTAAGGTATACTGCATCTGAAGTTTGTTGCTATTTTATTTGTAATTTGATTATTATAGAGAAGTGTACTCTTCACTTCTCACTTTTCGCGACAACGCCCATGGACTTTATTGTTCTTTTGTGCTGCTTGCTTTTGAAAACGCGGGGAAGGTGTCATTCTATTTTGGAACATACTAAAAAGGAAAATAGGTTCACTTAAACAATGAGTAATATTTCTTGTGGTCTATTTAAATCCTTGCTGGACAGAACTAAACCACCAATATGAGGAAACAAAAAGACATCAACTCTTTGGTTCCATTATTGTTGTTGGTTCCTTTTTATCTTTATTTTATTCCCATATTTATTTTCCTAATTATAGTTGAGGCTGTAGAGCGTGTGGGGGTATTTTTAGCTGGGTTTATGGTTTTATCATATAGTTGACATTATCATTGGATATGGACACCCTTTCTCAAAAGTTGTTGGAATGGTAGGGTTACAGTGGTATAATATTTTTTACTGCCATCATTCTATGGGTTGTTTTGGCAATAGGGTTTTGTCCAATTTTTATGTGTGTATTTGGATGCTTTTATCATTAACATATAGGACTTTAGTGGTCATATTATTCAAGTCTTGATCAATGGGATGAGAGAGTGGACCCACATAACATGATTGCTATGGCTGAAAGTTGAAAAACAGCTATTTGAGAATACGCAAGATAATGGCAATAAGGATTTTGGATTTTTTTTTCCAACTAGCCGTCAAGTTGGGCCTAAATTAGGAAATTTAAAGGCCAAGAATAGATGTGGTTGGGCAGATAAATGGTTTTAAATGGTTACTACAGTAGGAGTTTAAAACATGGAGTTCGAAATAATTCGGTACAAGTTGAAGATTGCTTTACGAAGATAGACTTGGCTCTTTTTGGACAAGAGAATACTCTTCATCTTGATGCGGGTAATTTGGCTTTTTCACATACATCGTTAGCCATTTCAAGCTACTGAAAATCTTGTGTTGGGGGAAAATAATGCACTGAAATGTTTAATTTAATAATCCACAAGTCTCAATTTAATATTTCTAGTTTGACAGATGCATCTATTAGATTTAGGGACAATATTTAAATATTTGAATTGTCCTAATTAAAAAAAAAAGAGTTGAACATTTGAATTGTTTATGGATTATTAGTTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAAGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCTACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGCGGTCATGTAAAATGAACAATTTTAAGCTTTAAAAAGATCTGGAGACCTCGTTAATCATATAATCTTTCAACTCAGGGCATTGCAAATTTTAGTTCTCTTTCTGCTATTATAGCATAGTTTTGGGGAAGGGTTTGCTATTAGTATTATTATTTGATTTGCCCCTTTATTGCTGCTTATCATTTGTTCTCTTCAGCAGGGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCA</genome_strand>
        <mrna_strand>TTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446959" ref_strand="+" ref_description="SGN-E446959 [cSTA-23-B24]">
      <seq>gctaccgacatggaaggagagagagaacaataagcggagaaagcggcggcggaaggcgatcgccgctaagatcttcgccggattaaggatgtatggtaattataagctcccgaagcactgtgataataacgaggtattgaaagctctgtgtaaagaggctggttgggttgttgaagaagatggaactacttacagaaagggatgcaagccaattgaacgcatggatatcggtggttctgtttctgtaagcccttgttcatcttaccaactgagccctggtgcttcatataatccgagtccagtttcatcacctatccctagcccggtctcatcccattatgtttccaatgtccaaaataattctgatcccaactctcttattccttggctaaacaacctgtcatctggctcatcaccatcctcgtctaagtttccccatcatctgtgcattcctggaggttctataagtgctcctgtgactccacctttgagctctcctactgccagtactcctaggatgaatgataattgggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="41815" stop="46534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42115" g_stop="42313" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42314" i_stop="45899" i_length="3586">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45900" g_stop="46234" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="537" r_length="338" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E446959" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42115" e_stop="42313"/>
          <exon e_start="45900" e_stop="46234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAGGTAAACTACTTTTTCCTCAAATATCACCATTTGTGCAAATATATAGCAATTAGTAAAGGCGAATTAAGCGGAATATATCTTTTAATTTCTTACTAGTTTTTTTTTGCTTTTGAAGATTACTGCTTCATTTACGCAACGAGAGGTTCGGGTTTAGTAAATTAGTTCTATTTTCATAGCCAAATTTAGAGGAAAAAGCATAAGATTGAAAAGACGAATCATCTCCATAGATTTGTTCTGCTTCGTGTATTTTGTGCACAGTCACAGAAGTCTGAACATTTCACCCAGATGTTAATTGGACGATATTACCCCTGTGTAACTTCTAGGGTCCCACTTTTTACTTTGAATTTGATGGGCTGTATGGACATTTCAGCCTGATTCCAGGGTTTTACCAGTCCTGAGTTTCTAAATCCTGAATCTGCAGTCTATTTATGAAGGGTAGTTTAGTAATCTAATCCTATTGTACAATTGTATATTCATGAAAGTACAACACCTTGATGCATGCTATCAGAATCCAAGTCTCTGAAAAGAAAAATGTTACTCGTCCTTTTTATGTGACACTATTTGACCGAGTATTGAGTTTATAAAAGAAAAGAACTTGAAATATTTGGTTTTTAATATGCAAATATCATTTCTGTGGCTATAGACTTTTGATACTTGTAATTTTAAATACAACATCATGTTTTTGTGACTATACAACTTTTTAAAATTGTAATTTGAACATGTATAGAAGCTTGTTGTTAAGGATAAAATGAGATGAAGTTAAATCATTTCCTTATTTAAAGAAGGGGCATTTTATCAAGTCATCCTGTCGTAGCTTAAAGCATAAAGTAGAGAAGCGACGAATTGTGGTCCCATAGGCGCTTTATAGTCAAATATAATGAGCAGTGGGTTCTATGAATCTCAACTTTGAGGAGTTGGATTAATGTAAGCACTATTGTTTAAGGTATACTGCATCTGAAGTTTGTTGCTATTTTATTTGTAATTTGATTATTATAGAGAAGTGTACTCTTCACTTCTCACTTTTCGCGACAACGCCCATGGACTTTATTGTTCTTTTGTGCTGCTTGCTTTTGAAAACGCGGGGAAGGTGTCATTCTATTTTGGAACATACTAAAAAGGAAAATAGGTTCACTTAAACAATGAGTAATATTTCTTGTGGTCTATTTAAATCCTTGCTGGACAGAACTAAACCACCAATATGAGGAAACAAAAAGACATCAACTCTTTGGTTCCATTATTGTTGTTGGTTCCTTTTTATCTTTATTTTATTCCCATATTTATTTTCCTAATTATAGTTGAGGCTGTAGAGCGTGTGGGGGTATTTTTAGCTGGGTTTATGGTTTTATCATATAGTTGACATTATCATTGGATATGGACACCCTTTCTCAAAAGTTGTTGGAATGGTAGGGTTACAGTGGTATAATATTTTTTACTGCCATCATTCTATGGGTTGTTTTGGCAATAGGGTTTTGTCCAATTTTTATGTGTGTATTTGGATGCTTTTATCATTAACATATAGGACTTTAGTGGTCATATTATTCAAGTCTTGATCAATGGGATGAGAGAGTGGACCCACATAACATGATTGCTATGGCTGAAAGTTGAAAAACAGCTATTTGAGAATACGCAAGATAATGGCAATAAGGATTTTGGATTTTTTTTTCCAACTAGCCGTCAAGTTGGGCCTAAATTAGGAAATTTAAAGGCCAAGAATAGATGTGGTTGGGCAGATAAATGGTTTTAAATGGTTACTACAGTAGGAGTTTAAAACATGGAGTTCGAAATAATTCGGTACAAGTTGAAGATTGCTTTACGAAGATAGACTTGGCTCTTTTTGGACAAGAGAATACTCTTCATCTTGATGCGGGTAATTTGGCTTTTTCACATACATCGTTAGCCATTTCAAGCTACTGAAAATCTTGTGTTGGGGGAAAATAATGCACTGAAATGTTTAATTTAATAATCCACAAGTCTCAATTTAATATTTCTAGTTTGACAGATGCATCTATTAGATTTAGGGACAATATTTAAATATTTGAATTGTCCTAATTAAAAAAAAAAGAGTTGAACATTTGAATTGTTTATGGATTATTAGTTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAAGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCTACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGCGGTCATGTAAAATGAACAATTTTAAGCTTTAAAAAGATCTGGAGACCTCGTTAATCATATAATCTTTCAACTCAGGGCATTGCAAATTTTAGTTCTCTTTCTGCTATTATAGCATAGTTTTGGGGAAGGGTTTGCTATTAGTATTATTATTTGATTTGCCCCTTTATTGCTGCTTATCATTTGTTCTCTTCAGCAGGGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAG--C-AGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAA</genome_strand>
        <mrna_strand>GCTACCGACATGGAAGGAGAGAGAGAACAATAAGCGGAGAAAGCGGCGGCGGAAGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAATTATAAGCTCCCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGGTTGTTGAAGAAGATGGAACTACTTACAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAATTGAACGCATGGATATCGGTGGTTCTGTTTCTGTAAGCCCTTGTTCATCTTACCAACTGAGCCCTGGTGCTTCATATAATCCGAGTCCAGTTTCATCACCTATCCCTAGCCCGGTCTCATCCCATTATGTTTCCAATGTCCAAAATAATTCTGATCCCAACTCTCTTATTCCTTGGCTAAACAACCTGTCATCTGGCTCATCACCATCCTCGTCTAAGTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCTACTGCCAGTACTCCTAGGATGAATGATAATTGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272198" ref_strand="+" ref_description="SGN-E272198 [cLEM-19-E3]">
      <seq>cgacatggaaggagagagagaataataagcggagagagcggcggcggagggcgatcgccgctaagatcttcgccggattaaggatgtatggtaactataagctaccgaagcactgtgataataacgaggtattgaaagctctgtgtaaagaggctggttggattgttgaagaagatggaactacttacagaaagggatgcaagccagttacacgcattgatatcggtggttctgtttctgtaagcagttcatcttaccaactcagccctggtgcttcatataatccgagtccggtttcatcatctatccctagcccggtctcatcccattatgttgccaatgtccaaaataattctgatccgaactctcttattccttggcttaagaacctgtcatctggctcatcaccatccttgtctaattttccccatcatctgtgcattcctggaggttctataagtgctcctgtgactccacctttgagctctcccactgccagtactcccaggatgaatgataattgggaaaatcccacggccaactctacatggatacaacagcattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="41820" stop="46572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42120" g_stop="42313" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42314" i_stop="45899" i_length="3586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45900" g_stop="46272" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="567" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E272198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42120" e_stop="42313"/>
          <exon e_start="45900" e_stop="46272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAGGTAAACTACTTTTTCCTCAAATATCACCATTTGTGCAAATATATAGCAATTAGTAAAGGCGAATTAAGCGGAATATATCTTTTAATTTCTTACTAGTTTTTTTTTGCTTTTGAAGATTACTGCTTCATTTACGCAACGAGAGGTTCGGGTTTAGTAAATTAGTTCTATTTTCATAGCCAAATTTAGAGGAAAAAGCATAAGATTGAAAAGACGAATCATCTCCATAGATTTGTTCTGCTTCGTGTATTTTGTGCACAGTCACAGAAGTCTGAACATTTCACCCAGATGTTAATTGGACGATATTACCCCTGTGTAACTTCTAGGGTCCCACTTTTTACTTTGAATTTGATGGGCTGTATGGACATTTCAGCCTGATTCCAGGGTTTTACCAGTCCTGAGTTTCTAAATCCTGAATCTGCAGTCTATTTATGAAGGGTAGTTTAGTAATCTAATCCTATTGTACAATTGTATATTCATGAAAGTACAACACCTTGATGCATGCTATCAGAATCCAAGTCTCTGAAAAGAAAAATGTTACTCGTCCTTTTTATGTGACACTATTTGACCGAGTATTGAGTTTATAAAAGAAAAGAACTTGAAATATTTGGTTTTTAATATGCAAATATCATTTCTGTGGCTATAGACTTTTGATACTTGTAATTTTAAATACAACATCATGTTTTTGTGACTATACAACTTTTTAAAATTGTAATTTGAACATGTATAGAAGCTTGTTGTTAAGGATAAAATGAGATGAAGTTAAATCATTTCCTTATTTAAAGAAGGGGCATTTTATCAAGTCATCCTGTCGTAGCTTAAAGCATAAAGTAGAGAAGCGACGAATTGTGGTCCCATAGGCGCTTTATAGTCAAATATAATGAGCAGTGGGTTCTATGAATCTCAACTTTGAGGAGTTGGATTAATGTAAGCACTATTGTTTAAGGTATACTGCATCTGAAGTTTGTTGCTATTTTATTTGTAATTTGATTATTATAGAGAAGTGTACTCTTCACTTCTCACTTTTCGCGACAACGCCCATGGACTTTATTGTTCTTTTGTGCTGCTTGCTTTTGAAAACGCGGGGAAGGTGTCATTCTATTTTGGAACATACTAAAAAGGAAAATAGGTTCACTTAAACAATGAGTAATATTTCTTGTGGTCTATTTAAATCCTTGCTGGACAGAACTAAACCACCAATATGAGGAAACAAAAAGACATCAACTCTTTGGTTCCATTATTGTTGTTGGTTCCTTTTTATCTTTATTTTATTCCCATATTTATTTTCCTAATTATAGTTGAGGCTGTAGAGCGTGTGGGGGTATTTTTAGCTGGGTTTATGGTTTTATCATATAGTTGACATTATCATTGGATATGGACACCCTTTCTCAAAAGTTGTTGGAATGGTAGGGTTACAGTGGTATAATATTTTTTACTGCCATCATTCTATGGGTTGTTTTGGCAATAGGGTTTTGTCCAATTTTTATGTGTGTATTTGGATGCTTTTATCATTAACATATAGGACTTTAGTGGTCATATTATTCAAGTCTTGATCAATGGGATGAGAGAGTGGACCCACATAACATGATTGCTATGGCTGAAAGTTGAAAAACAGCTATTTGAGAATACGCAAGATAATGGCAATAAGGATTTTGGATTTTTTTTTCCAACTAGCCGTCAAGTTGGGCCTAAATTAGGAAATTTAAAGGCCAAGAATAGATGTGGTTGGGCAGATAAATGGTTTTAAATGGTTACTACAGTAGGAGTTTAAAACATGGAGTTCGAAATAATTCGGTACAAGTTGAAGATTGCTTTACGAAGATAGACTTGGCTCTTTTTGGACAAGAGAATACTCTTCATCTTGATGCGGGTAATTTGGCTTTTTCACATACATCGTTAGCCATTTCAAGCTACTGAAAATCTTGTGTTGGGGGAAAATAATGCACTGAAATGTTTAATTTAATAATCCACAAGTCTCAATTTAATATTTCTAGTTTGACAGATGCATCTATTAGATTTAGGGACAATATTTAAATATTTGAATTGTCCTAATTAAAAAAAAAAGAGTTGAACATTTGAATTGTTTATGGATTATTAGTTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAAGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCTACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGCGGTCATGTAAAATGAACAATTTTAAGCTTTAAAAAGATCTGGAGACCTCGTTAATCATATAATCTTTCAACTCAGGGCATTGCAAATTTTAGTTCTCTTTCTGCTATTATAGCATAGTTTTGGGGAAGGGTTTGCTATTAGTATTATTATTTGATTTGCCCCTTTATTGCTGCTTATCATTTGTTCTCTTCAGCAGGGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATC</genome_strand>
        <mrna_strand>CGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691639" ref_strand="+" ref_description="SGN-E691639 [LH_Ea06K05]">
      <seq>ccggaaagatgtaggttcatatgttgaccctgttgcttgtggcctataatgtagaggagaattgtgataaaaatagcaaactttgggtcccgcataactgttactatatgaagctgaagacattgcttaaagggacatcgttatgctgaggttttgaaagagagtatctcctgggatgaataatattttaactacgttctataatttcttggttgcttctttggacagcaaacttacttttaattactgagctactgttacatctacttgaaactctgtggttgaccttaactggaaaatttctttaaaatgtgtaaagaaataaggaattctgcaacaaatatggatctctttttggttcttgttcattattgtttctcttagtcactgttttgacttggtagccaccaaatgtattagccgtgatacaggttatcataaaaggtcattacattgtgttgctagcttttttgccaaattattaggtgcaagaactatcatgtggtggataccaaacacaaacagggcattgtactctgaatctactgacatgttttttttcttgacgggagaagttggttggtcaatgtggtgagaagttggttccgacaaatatgtgcacctttacaggaacatagatatagtctaagttgctcgggctcttcacttttggtgccacattcatgtccacacgacaagtgtgtgggatccatgtctgattgggtcaacggattttggtctttgaccaaaatcgatggggttggacaattttaatgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="44112" stop="45494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44409" g_stop="45194" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E691639" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44409" e_stop="45194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACT</genome_strand>
        <mrna_strand>CCGGAAAGATGTAGGTTCATATGTTGACCCTGTTGCTTGTGGCCTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACATCGTTATGCTGAGGTTTTGAAAGAGAGTATCTCCTGGGATGAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAAACTTACTTTTAATTACTGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAACAAATATGGATCTCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCATAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGACGGGAGAAGTTGGTTGGTCAATGTGGTGAGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACATTCATGTCCACACGACAAGTGTGTGGGATCCATGTCTGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATCGATGGGG----T-TGGACAATTTTAATGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695479" ref_strand="+" ref_description="SGN-E695479 [LH_Ea06K05](-)">
      <seq>acagggcattgtactctgaatctactgacatgttttttttcttgacgggagaagttggttggtcaatgtggtgagaagttggttccgacaaatatgtgcacctttacaggaacatagatatagtctaagttgctcgggctcttcacttttggtgccacattcatgtccacacgacaagtgtgtgggatccatgtctgattgggtcaacggattttggtctttgaccaaaatcgatggggttggacaattttaatgatactaatacaaaagctaaggggaaattgaagaaaaatggaataccttgtatatagaaatttttatgtcactccttttcctttaatctccttcactattctcctcaagttttccacataatatctcataatttaggttttatttctctattttagatattttaattatttttaggcaaatacccacacccgtatccatacatgaattcatatccccgaatcttaaaaattagatcatgaaaaatccaacctctagatctgcaaccgtatcggacatccgcacccgagtccgagcaacttaggatgtaggtagtcctcattccataccaaaatctatatgctcatttcaagagcaagagcttctgatttcgatagggattttggtgctgtttatagatgtatgcaaatcagcggatatattactaagtaactagggaatcaatgcactcttttgttggagcattgatgtatataagggataagtaaaaccaagttacacttcacctctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="44630" stop="45990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44930" g_stop="45703" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E695479" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44930" e_stop="45703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAA-GGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATG----T-C---TACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGC</genome_strand>
        <mrna_strand>ACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGACGGGAGAAGTTGGTTGGTCAATGTGGTGAGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACATTCATGTCCACACGACAAGTGTGTGGGATCCATGTCTGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATCGATGGGG----T-TGGACAATTTTAATGATACTAATACAAAAGCTAAGGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCACTCCTTTTCCTTTAATCTCCTTCACTATTCTCCTCAAGTTTTCCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCGTATCCATACATGAATTCATATCCCCGAATCTTAAAAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAACCGTATCGGACATCCGCACCCGAGTCCGAGCAACTTAGGATGTAGGTAGTCCTCATTCCATACCAAAATCTATATGCTCA-TTTCAAGAGCAAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGTTTATAGATGTATGCAAATCAGCGGATATATTACTAAGTAACTAGGGAATCAATGCACTCTTTTGTTGGAGCATTGATGTATATAAGGGATAAGTAAAACCAAGTTACACTTCACCTCTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210293" ref_strand="+" ref_description="SGN-E210293 [cLEC-35-A16]">
      <seq>cattatgttgccaatgtccaaaataattctgatccgaactctcttattccttggcttaagaacctgtcatctggctcatcaccatccttgtctaattttccccatcatctgtgcattcctggaggctctataagtgctcctgtgactccacctttgagctctcccactgccagtactcccaggatgaatgataattgggaaaatcccacggccaactctacatggatacaacagcattatcccttcttgccatcctcaacccctcctagtccaggtcgccaaaccccaccggattcaggatggctctctggtgttcaaactccacaggatgggccttcatctcccactttcagccttgtctcgtcaaatccatttggatttaaggagccattatcaaatggagggtctcgaatgtggacacctgggcaaagtgggacgtgttcacctgcagttggaccttgtatggaccaaacagctgatgtaccaatgtcggatgctatctcagcagagtttgcatttggcagcaatatgaaaggtgtagtcaagccatgggaaggagaaagaattcatgaagagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="45732" stop="46909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46032" g_stop="46609" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E210293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46032" e_stop="46609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATCCTCAACCCCTCCTAGTCCAGGTCGCCAAACCCCACCGGATTCAGGATGGCTCTCTGGTGTTCAAACTCCACAGGATGGGCCTTCATCTCCCACTTTCAGCCTTGTCTCGTCAAATCCATTTGGATTTAAGGAGCCATTATCAAATGGAGGGTCTCGAATGTGGACACCTGGGCAAAGTGGGACGTGTTCACCTGCAGTTGGACCTTGTATGGACCAAACAGCTGATGTACCAATGTCGGATGCTATCTCAGCAGAGTTTGCATTTGGCAGCAATATGAAAGGTGTAGTCAAGCCATGGGAAGGAGAAAGAATTCATGAAGAGTG</genome_strand>
        <mrna_strand>CATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGCTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATCCTCAACCCCTCCTAGTCCAGGTCGCCAAACCCCACCGGATTCAGGATGGCTCTCTGGTGTTCAAACTCCACAGGATGGGCCTTCATCTCCCACTTTCAGCCTTGTCTCGTCAAATCCATTTGGATTTAAGGAGCCATTATCAAATGGAGGGTCTCGAATGTGGACACCTGGGCAAAGTGGGACGTGTTCACCTGCAGTTGGACCTTGTATGGACCAAACAGCTGATGTACCAATGTCGGATGCTATCTCAGCAGAGTTTGCATTTGGCAGCAATATGAAAGGTGTAGTCAAGCCATGGGAAGGAGAAAGAATTCATGAAGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253230" ref_strand="+" ref_description="SGN-E253230 [cLEG-26-L4]">
      <seq>acctgtcatctggctcatcaccattcttgtctaattttccccatcatctgtgcattcctggaggttctataagtgctcctgtgactccacctttgatctctcccactgccagtactcccaggatgaatgataattgggaaaatcccacggccaactctacatggatacaacagcattatcccttcttgccattctcaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="45793" stop="46593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46093" g_stop="46293" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E253230" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46093" e_stop="46293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATCCTCAACCC</genome_strand>
        <mrna_strand>ACCTGTCATCTGGCTCATCACCATTCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGATCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATTCTCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207266" ref_strand="+" ref_description="SGN-E207266 [cLEC-30-E17]">
      <seq>ctcatcttatttctcaaaaagataaaactgtaggagaaaaaaaaagaagatttatatatatattgattatgaggtaatttaatttaatttatttatttatcgaccaaaagatgttgaaataatggagccccatcacaattcggattccaagtttgctactccaggagaagttgatccttcttcgacttcttattctagggtttctaatccacttgttcaatcgattggtttattgagttctgagaagagaattccagaagctattctacaaaatgcaagaggccttgccattcttacggtcgtgaaagttggagtgatggtaacctacaacatcggaactggattggtaattgcacgtagagaagatggttcatggtctcccccgtcggccatttcttctttcggtgtaggatggggtgctcaggttggtggagaacttactgacttcattattgtcctgagaactagtgatgctgtcaagacttttggtggtgatgcacatcttttcattggagctggtgtgagtgcttctgcggggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="53119" stop="48092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52819" g_stop="52597" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52596" i_stop="49372" i_length="3225">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49371" g_stop="49171" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="424" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49170" i_stop="48511" i_length="660">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48510" g_stop="48392" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="543" r_length="119" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E207266" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52819" e_stop="52597"/>
          <exon e_start="49371" e_stop="49171"/>
          <exon e_start="48510" e_stop="48392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCCAATTTCTCAAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCGGTAATTCTCTCTGCAATTCTTCGTATTTTATCATTGATTGATTTTTTAATAGTTTTTTGGATTTGTTGTATATGCTTTGCTGTTCGATTTGGTTGAACTTTGATTGGACGAACCGATATTTGTTTGAGCTGCTGTTTAATCAAACTTTGACTGGTGCAGAGTTTTGGGTTTGTTTCAATTGCATAAAGTTATTGTCTTTATTAGAATAATTGTCGGTGTTTCAATAATTATGGTTTTGGTTAGTTGTTGAAGTTATTGTTGAGATCATCGAAGAAATTTGGGCTATTTTGCTACCCAAGGGCCTAGTGGTTAATGATTTGGGTTGGGGACGGTGAGGTCCGCATGTTATAATCCCAGCAGAGACAAAAACACCAAGCTGATCTCGTTTTATCTGTTTTAGCGGTGGACTGTGTGGGTACCTATCCCAGGCGGGGGGGGGGGGGTGGCAGTTATACTGTGGATTAGCCGATTGCCTTACCCGCTTTTAGAGTTGGATATGGTGTGTTGGATATCGATTGCCATATCCATATCAAAACTTTTGATAGGAATCCCTGGACAAACCGTCTGTAGTAGCATGCCAACCCAACAGAACTCCGAATCTCTGACATTCAGGTGGGCCTAGCCCCAATCACGGACCGCCTTAATTTTCACTAGGTGTGGAATTAGCCGATCGGGACACCACAGTTATCAAAAGAGAATTGGCCTATTTTAGTGAATTGATGAGCTTTCAGGAGTGTAAAAATGTGGATTTTGTTATGTTACAACTTATATCATTCCTATGGAGATTTGCCTTTATAAAAAAAACACAGTAATACAGGCAATGAGATTTCTCTGTAGAAGTTATAGTTTTGAGGTTTTGTTTATTTAAAGTAAATAATCAAAGGATTTAGGGGTGCGATTATCTGTGGAAAGTAAACTTGTCATCGACATACAATGACAAGATGAATTTCCTTCGTTTCTCTTTTTTTTTCCTGGGTGGGTGGGTGGGTGGTTCCAAGGGTGATTAAAAATTCAGAATCAGAAGTATAAATCATAACAAGTAAAAGTAGCTGCTGCTGCTGATGAATATTGAATACTTTTCTGCTACAACTTAGCTGTCACTCATTCTGTCAACAATGGTAGAGAAGTGACTTTCTAGTTTTTTTTAATCACGAAAAGAAGTTCAAAACATTCAACTGTAAGTAAGTAGGCATTTTTGAAAGTTCTCTTCGCCAAAAAGTAAACGAATAGTCATGTGCTGGAAGTTTTAGTTATATGCTGATAGTTACTACTTGTCTCTTCATTGGCCTGTCCCGTTTCAAATTGTTGAGCTCTTTTCTTTTGTTGGGTGAAGTAGAGATATTTGCCAATTGTTAGTAGTTACTTGTTCTAATGTTATCCTATTTATTAATTCATTCATGTTGGTTAAAAGTTACAGCATTTTGTAAGTGCAAGCAAAATTTTAATGTTTGACATGAGAATGCACGCTTACCATGTTTTTTGGTAATAGGACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAAAGTGCAGTCCCTTGCATCTGGTGATATAGTTGGTAACATGTCGTGGATATCAAGCCATCTCATTGAGCAGGCTTGGAAAGAGATGGCTCAAACCCTCACAGAAGCTAATTTCGGTAATGCCCAGGAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAGGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAGGTATGAAGTTCTATCTTATGTGTTAAATGTTGCATCTCTTACATATCTACTTATTCATACTACTGAAGCAAACACTACTTCCTCATACTCCTGAAGCAAACACTGATATCTCACCCCACAATATGTATATCCCCCAGCTATATACTTCAGTCTGATTTAAAGAAACCAATTGCTGCATCATTGTTCTACTTAACTTTCTAGTCTCTCATCCACCTTTTTGGAGTTCTACTGATATGCATCTTATATGTAAAAATAAGCAAGCATACTCTTTGTTATTTAATTTCTTGATATCTACAATGATATACCGGCTGGCCTGAAATATTCTGAACAAAAAATTTCAGATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCACGTAGAGAAGATGGTTCATGGTCTCCCCCGTCGGCCATTTCTTCTTTCGGTGTAGGATGGGGTGCTCAGGTGAATAAATTTACTGCTATATTTCTGCTAAATGTAGTTAAGGATTATTCCTACCTGTATATAGTGGTATAGATAAAGAGGATTCATATGGCTGCCAACTTTGCTTATTTGTATTGAGAAGCATTTGTCATTCCTGTATAGAGTAGTGGTGCAGATATAGAGGATTCATATGACTGGCAACTAATTTTGGATAGAGGATAATTGTCACTTCGCTTATCTTTATTGAGAGGCATTTGTCATTTTAGGAAGAAATAATAGATCTGAGCGTTGCATATGGCTACCCATGGACGGTGGTGTCTTAATTGGCACATGTGGAATCCTTACCCAGTGACTTTTGGATGTTATCCATGATCATGGATAACTCTAGGCAAATTCAAATACCATCTTGAGATGATTTGGGATGAAAATGAAGTTCTTTGCAGTTCTGCACTGGGTTTCATATTGAACCCTGTTCGTTTCTGTTTAGAGTTGAACATCAGAGAATGATGCCTGTTCAGTAGTCAGATACTAGAGAGAATTATCAATTTGTTGAAAGTTCCAGCTTTTCTGTTCTTTCTTTAATGTAGTTTCTTCAAGAAGTGTCTAAGTTTGTTAGGAGGTTAATATCTTTTCAGACGAACTTGCCATCAGTAAATCATAAAACAGATTTCTATTTTGTAGGTTGGTGGAGAACTTACTGACTTCATTATTGTCCTGAGAACTAGTGATGCTGTCAAGACTTTTGGTGGTGATGCACATCTTTCAGTTGGAGCTGGTGTGAGTGCTGCTGCGGGGATCAT</genome_strand>
        <mrna_strand>CTCATCTTATTTCTCAAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCACGTAGAGAAGATGGTTCATGGTCTCCCCCGTCGGCCATTTCTTCTTTCGGTGTAGGATGGGGTGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGGAGAACTTACTGACTTCATTATTGTCCTGAGAACTAGTGATGCTGTCAAGACTTTTGGTGGTGATGCACATCTTTTCATTGGAGCTGGTGTGAGTGCTTCTGCGGGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551236" ref_strand="+" ref_description="SGN-E551236 [TUS-55-O4]">
      <seq>gaaattcttgaggcagatcctcctaaatggctgcctgacagtgcatcttccacttgtatgttgtgtaatgtgcggttccaccctatcatgtgcagcaagcatcattgtcgattttgtggaggattattttgcaatgaatgtactaaaggaaggagcttgctccctgaaaaatttcgcactggggaaccacaacgagtatgtgatgtatgttttgtacgtctcgagtctgtgcagccatacctaatggatcaagtaagtcgtgctgctcagttgccaacccatgacctcactgacttgagcacactgagatcctgggtaaacttcccatggggacagtcaatggagtatgaaatttataaggctgctaacactattcggggctatgagaagattggtttattgagttctgagaagagaattccagaagctattctacaaaatgcaagaggccttgccattcttacggtcgtgaaatttggagtgatggtaacctacaacatcggaactggattggtaattgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="50402" stop="48939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50102" g_stop="49713" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49712" i_stop="49372" i_length="341">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49371" g_stop="49239" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="523" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E551236" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50102" e_stop="49713"/>
          <exon e_start="49371" e_stop="49239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAGGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAGGTATGAAGTTCTATCTTATGTGTTAAATGTTGCATCTCTTACATATCTACTTATTCATACTACTGAAGCAAACACTACTTCCTCATACTCCTGAAGCAAACACTGATATCTCACCCCACAATATGTATATCCCCCAGCTATATACTTCAGTCTGATTTAAAGAAACCAATTGCTGCATCATTGTTCTACTTAACTTTCTAGTCTCTCATCCACCTTTTTGGAGTTCTACTGATATGCATCTTATATGTAAAAATAAGCAAGCATACTCTTTGTTATTTAATTTCTTGATATCTACAATGATATACCGGCTGGCCTGAAATATTCTGAACAAAAAATTTCAGATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCAC</genome_strand>
        <mrna_strand>GAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAAGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................ATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAATTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689055" ref_strand="+" ref_description="SGN-E689055 [t3_tus_55_O04]">
      <seq>gaaattcttgaggcagatcctcctaaatggctgcctgacagtgcatcttccacttgtatgttgtgtaatgtgcggttccaccctatcatgtgcagcaagcatcattgtcgattttgtggaggattattttgcaatgaatgtactaaaggaaggagcttgctccctgaaaaatttcgcactggggaaccacaacgagtatgtgatgtatgttttgtacgtctcgagtctgtgcagccatacctaatggatcaagtaagtcgtgctgctcagttgccaacccatgacctcactgacttgagcacactgagatcctgggtaaacttcccatggggacagtcaatggagtatgaaatttataaggctgctaacactattcggggctatgagaagattggtttattgagttctgagaagagaattccagaagctattctacaaaatgcaagaggccttgccattcttacggtcgtgaaatttggagtgatggtaacctacaacatcggaactggattggtaattgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="50402" stop="48939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50102" g_stop="49713" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49712" i_stop="49372" i_length="341">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49371" g_stop="49239" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="523" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E689055" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50102" e_stop="49713"/>
          <exon e_start="49371" e_stop="49239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAGGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAGGTATGAAGTTCTATCTTATGTGTTAAATGTTGCATCTCTTACATATCTACTTATTCATACTACTGAAGCAAACACTACTTCCTCATACTCCTGAAGCAAACACTGATATCTCACCCCACAATATGTATATCCCCCAGCTATATACTTCAGTCTGATTTAAAGAAACCAATTGCTGCATCATTGTTCTACTTAACTTTCTAGTCTCTCATCCACCTTTTTGGAGTTCTACTGATATGCATCTTATATGTAAAAATAAGCAAGCATACTCTTTGTTATTTAATTTCTTGATATCTACAATGATATACCGGCTGGCCTGAAATATTCTGAACAAAAAATTTCAGATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCAC</genome_strand>
        <mrna_strand>GAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAAGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................ATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAATTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264800" ref_strand="+" ref_description="SGN-E264800 [cLEG-71-B6]">
      <seq>ttcttgaggcagatcctcctaaatggctgcctgacagtgcatcttccacttgtatgttgtgtaatgtgcggttccaccctatcatgtgcagcaggcatcattgtcgattttgtggaggattattttgcaatgaatgtactaaaggaaggagcttgctccctgaaaaatttcgcactggggaaccacaacgagtatgtgatgtatgttttgtacgtctcgagtctgtgcagccatacctaatggatcaagtaagtcgtgctgctcagttgccaacccatgacctcactgacttgagcacactgagatcctgggtaaacttcccatggggacagtcaatggagtatgaaatttataaggctgctaacactattcggggctatgagaagattggtttattgagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="50398" stop="49053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50098" g_stop="49713" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49712" i_stop="49372" i_length="341">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49371" g_stop="49353" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="405" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E264800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50098" e_stop="49713"/>
          <exon e_start="49371" e_stop="49353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAGGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAGGTATGAAGTTCTATCTTATGTGTTAAATGTTGCATCTCTTACATATCTACTTATTCATACTACTGAAGCAAACACTACTTCCTCATACTCCTGAAGCAAACACTGATATCTCACCCCACAATATGTATATCCCCCAGCTATATACTTCAGTCTGATTTAAAGAAACCAATTGCTGCATCATTGTTCTACTTAACTTTCTAGTCTCTCATCCACCTTTTTGGAGTTCTACTGATATGCATCTTATATGTAAAAATAAGCAAGCATACTCTTTGTTATTTAATTTCTTGATATCTACAATGATATACCGGCTGGCCTGAAATATTCTGAACAAAAAATTTCAGATTGGTTTATTGAGTTCTG</genome_strand>
        <mrna_strand>TTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAGGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................ATTGGTTTATTGAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207377" ref_strand="+" ref_description="SGN-E207377 [cLEC-36-E4]">
      <seq>ggttccgaatcatttggtcaaagtgcaggtcatggaaacaaggataagagttatatcatgggcaagccagtgggtggacagcaagaaactgatcatgattcacctttgtgcacaaaagaaaactatgagaaggaggcacacacaactaatggaatggttaaagctgaagtctctaatgttaatttaactcaacagactaacggaagtgacataaaaataaatcttctgtacccacaattagctgaaaatatagattgtgcaactcagtcatctcaaaatgcagaaggaagtatatgccaccaaaatcaagaaaaatatttctgctacgattcgccactttttggtgaaactggggcttggatacctgtatcagttcctccaatgtcggagagtgagcatgatgagtggagtagaggtttctgctcaaatggtgggtaccttcctgaaggtgacacagattggaatcagtgcatgggagaagacaaggagttgaccatgtgggatgtggttctggatatgttgctcgcagcacgaggaaaagtgcagtcccttgcatctggtgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="51065" stop="49900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50765" g_stop="50200" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E207377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50765" e_stop="50200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAAAGTGCAGTCCCTTGCATCTGGTGATAT</genome_strand>
        <mrna_strand>GGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAAAGTGCAGTCCCTTGCATCTGGTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204233" ref_strand="+" ref_description="SGN-E204233 [cLEC-13-J15]">
      <seq>ggttccgaatcatttggtcaaagtgcaggtcatggaaacaaggataagagttatatcatgggcaagccagtgggtggacagcaagaaactgatcatgattcacctttgtgcacaaaagaaaactatgagaaggaggcacacacaactaatggaatggttaaagctgaagtctctaatgttaatttaactcaacagactaacggaagtgacataaaaataaatcttctgtacccacaattagctgaaaatatagattgtgcaactcagtcatctcaaaatgcagaaggaagtatatgccaccaaaatcaagaaaaatatttctgctacgattcgccactttttggtgaaactggggcttggatacctgtatcagttcctccaatgtcggagagtgagcatgatgagtggagtagaggtttctgctcaaatggtgggtaccttcctgaaggtgacacagattggaatcagtgcatgggagaagacaaggagttgaccatgtgggatgtggttctggatatgttgctcgcagcacgaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="51065" stop="49927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50765" g_stop="50227" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E204233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50765" e_stop="50227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAA</genome_strand>
        <mrna_strand>GGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207228" ref_strand="+" ref_description="SGN-E207228 [cLEC-30-D2]">
      <seq>tttggtcaaagtgcaggtcatggaaacaaggataagagttatatcatgggcaagccagtgggtggacagcaagaaactgatcatgattcacctttgtgcacaaaagaaaactatgagaaggaggcacacacaactaatggaatggttaaagctgaagtctctaatgttaatttaactcaacagactaacggaagtgacataaaaataaatcttctgtacccacaattagctgaaaatatagattgtgcaactcagtcatctcaaaatgcagaaggaagtatatgccaccaaaatcaagaaaaatatttctgctacgattcgccactttttggtgaaactggggcttggatacctgtatcagttcctccaatgtcggagagtgagcatgatgagtggagtagaggtttctgctcaaatggtgggtaccttcctgaaggtgacacagattggaatcagtgcatgggagaagacaaggagttgaccatgtgggatgtggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="51053" stop="49955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50753" g_stop="50255" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E207228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50753" e_stop="50255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTC</genome_strand>
        <mrna_strand>TTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331287" ref_strand="+" ref_description="SGN-E331287 [cTOD-6-D4]">
      <seq>tttggagataacagaagcctgtatgattttgatccagtcataagttcaaacattgtaaaaacgggtaagcatgaagaatataacatagtagctgtacacctaatgaatggaactcccaagaacacaagtttgatgagtcgtctagatactcaagctgaggaacttttcagtaaacagtcatttcatgacactggagaagctagtgagaggtatcatatggatggatggaaagggaaatctgaagaagattctataactctgagacagaacaatatcttgaggagttctgagaagattattagcagcaactgtgataaaagtagaaaatgtggttccgaatcatttggtcaaagtgcaggtcatggaaacaaggataagagttatatcatgggcaagccagtgggtggacagcaagaaactgatcatgattcacctttgtgcacaaaagaaaactatgagaaggaggcacacacaactaatggaatggttaaagctgaagtctctaatgttaatttaactcaacagactaacggaagtgacataaaaataaatcttctgtacccacaattagctgaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="51395" stop="50216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51095" g_stop="50516" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E331287" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51095" e_stop="50516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATA</genome_strand>
        <mrna_strand>TTTGGAGATAACAGAAGCCTGTATGATTTTGATCCAGTCATAAGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261443" ref_strand="+" ref_description="SGN-E261443 [cLEG-57-D24]">
      <seq>aaaaagataaaactgtaggagaaaaaaaaagaagatttatatatatattgattatgaggtaatttaatttaatttatttatttatcgaccaaaagatgttgaaataatggagccccatcacaattcggattccaagtttgctactccaggagaagttgatccttcttcgacttctattctagggtttctaatccacttgttcaatcggactgtagtaagtttggagataacagaggcctggatgattttgatccagtcataggttcaaacattgtaaaaacgggtaagcatgaagaatataacatagtagctgtacacctaatgaatggaactcccaagaacacaagtttgatgagtcgtctagatactcaagctgaggaacttttcagtaaacagtcatttcatgacactggagaagctagtgagaggtatcatatggatggatggaaagggaaatctgaagaagattctataactctgagacagaacaatatcttgaggagttctgagaagattattagcagcaactgtgataaaagtagaaaatgtggttccgaatcatttggtcaaagtgcaggtcatggaaacaaggataagagttatatcatgggcaagccagtgggtggacagcaagaaactgatcatgattcacctttgtgcacaaaagaaaactatgagaaggaggcacacacaactaatggaatggttaaagctgaagtctctaatgttaatttaactcaacagactaacggaagtgacataaaaataaatcttctgtacccacaattagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="53104" stop="50223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52804" g_stop="52597" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52596" i_stop="51108" i_length="1489">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="50523" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="792" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E261443" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52804" e_stop="52597"/>
          <exon e_start="51107" e_stop="50523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCGGTAATTCTCTCTGCAATTCTTCGTATTTTATCATTGATTGATTTTTTAATAGTTTTTTGGATTTGTTGTATATGCTTTGCTGTTCGATTTGGTTGAACTTTGATTGGACGAACCGATATTTGTTTGAGCTGCTGTTTAATCAAACTTTGACTGGTGCAGAGTTTTGGGTTTGTTTCAATTGCATAAAGTTATTGTCTTTATTAGAATAATTGTCGGTGTTTCAATAATTATGGTTTTGGTTAGTTGTTGAAGTTATTGTTGAGATCATCGAAGAAATTTGGGCTATTTTGCTACCCAAGGGCCTAGTGGTTAATGATTTGGGTTGGGGACGGTGAGGTCCGCATGTTATAATCCCAGCAGAGACAAAAACACCAAGCTGATCTCGTTTTATCTGTTTTAGCGGTGGACTGTGTGGGTACCTATCCCAGGCGGGGGGGGGGGGGTGGCAGTTATACTGTGGATTAGCCGATTGCCTTACCCGCTTTTAGAGTTGGATATGGTGTGTTGGATATCGATTGCCATATCCATATCAAAACTTTTGATAGGAATCCCTGGACAAACCGTCTGTAGTAGCATGCCAACCCAACAGAACTCCGAATCTCTGACATTCAGGTGGGCCTAGCCCCAATCACGGACCGCCTTAATTTTCACTAGGTGTGGAATTAGCCGATCGGGACACCACAGTTATCAAAAGAGAATTGGCCTATTTTAGTGAATTGATGAGCTTTCAGGAGTGTAAAAATGTGGATTTTGTTATGTTACAACTTATATCATTCCTATGGAGATTTGCCTTTATAAAAAAAACACAGTAATACAGGCAATGAGATTTCTCTGTAGAAGTTATAGTTTTGAGGTTTTGTTTATTTAAAGTAAATAATCAAAGGATTTAGGGGTGCGATTATCTGTGGAAAGTAAACTTGTCATCGACATACAATGACAAGATGAATTTCCTTCGTTTCTCTTTTTTTTTCCTGGGTGGGTGGGTGGGTGGTTCCAAGGGTGATTAAAAATTCAGAATCAGAAGTATAAATCATAACAAGTAAAAGTAGCTGCTGCTGCTGATGAATATTGAATACTTTTCTGCTACAACTTAGCTGTCACTCATTCTGTCAACAATGGTAGAGAAGTGACTTTCTAGTTTTTTTTAATCACGAAAAGAAGTTCAAAACATTCAACTGTAAGTAAGTAGGCATTTTTGAAAGTTCTCTTCGCCAAAAAGTAAACGAATAGTCATGTGCTGGAAGTTTTAGTTATATGCTGATAGTTACTACTTGTCTCTTCATTGGCCTGTCCCGTTTCAAATTGTTGAGCTCTTTTCTTTTGTTGGGTGAAGTAGAGATATTTGCCAATTGTTAGTAGTTACTTGTTCTAATGTTATCCTATTTATTAATTCATTCATGTTGGTTAAAAGTTACAGCATTTTGTAAGTGCAAGCAAAATTTTAATGTTTGACATGAGAATGCACGCTTACCATGTTTTTTGGTAATAGGACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCT</genome_strand>
        <mrna_strand>AAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTC-TATTCTAGGGTTTCTAATCCACTTGTTCAATCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254209" ref_strand="+" ref_description="SGN-E254209 [cLEG-34-P15]">
      <seq>aaaaagataaaactgttggagaattaaaaagaagatttatatatatatggattatgaggtaatttaattgaatttatttatttatcgaccaaaagatgttgaaataatggagccccatcacaattcggattccaagtttgctactccaggagaagttgatccttcttcgacttctattctagggtttctaatccacttgttcaatcggactgtagtaagtttggagataacagaggcctggatgattttgatccagtcataggttcaaacattgtaaaaacgggtaagcatgaagaatataacatagtagctgtacacctaatgaatggaactcccaagaacacaagtttgatgagtcgtctagatactcaagctgaggaacttttcagtaaacagtcatttcatgacactggagaagctagtgagaggtatcatatggatggatggaaagggaaatctgaagaagattctataactctgagacagaacaatatcttgaggagttctgagaagattattagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="53104" stop="50491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52804" g_stop="52597" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52596" i_stop="51108" i_length="1489">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="50791" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="524" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E254209" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52804" e_stop="52597"/>
          <exon e_start="51107" e_stop="50791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCGGTAATTCTCTCTGCAATTCTTCGTATTTTATCATTGATTGATTTTTTAATAGTTTTTTGGATTTGTTGTATATGCTTTGCTGTTCGATTTGGTTGAACTTTGATTGGACGAACCGATATTTGTTTGAGCTGCTGTTTAATCAAACTTTGACTGGTGCAGAGTTTTGGGTTTGTTTCAATTGCATAAAGTTATTGTCTTTATTAGAATAATTGTCGGTGTTTCAATAATTATGGTTTTGGTTAGTTGTTGAAGTTATTGTTGAGATCATCGAAGAAATTTGGGCTATTTTGCTACCCAAGGGCCTAGTGGTTAATGATTTGGGTTGGGGACGGTGAGGTCCGCATGTTATAATCCCAGCAGAGACAAAAACACCAAGCTGATCTCGTTTTATCTGTTTTAGCGGTGGACTGTGTGGGTACCTATCCCAGGCGGGGGGGGGGGGGTGGCAGTTATACTGTGGATTAGCCGATTGCCTTACCCGCTTTTAGAGTTGGATATGGTGTGTTGGATATCGATTGCCATATCCATATCAAAACTTTTGATAGGAATCCCTGGACAAACCGTCTGTAGTAGCATGCCAACCCAACAGAACTCCGAATCTCTGACATTCAGGTGGGCCTAGCCCCAATCACGGACCGCCTTAATTTTCACTAGGTGTGGAATTAGCCGATCGGGACACCACAGTTATCAAAAGAGAATTGGCCTATTTTAGTGAATTGATGAGCTTTCAGGAGTGTAAAAATGTGGATTTTGTTATGTTACAACTTATATCATTCCTATGGAGATTTGCCTTTATAAAAAAAACACAGTAATACAGGCAATGAGATTTCTCTGTAGAAGTTATAGTTTTGAGGTTTTGTTTATTTAAAGTAAATAATCAAAGGATTTAGGGGTGCGATTATCTGTGGAAAGTAAACTTGTCATCGACATACAATGACAAGATGAATTTCCTTCGTTTCTCTTTTTTTTTCCTGGGTGGGTGGGTGGGTGGTTCCAAGGGTGATTAAAAATTCAGAATCAGAAGTATAAATCATAACAAGTAAAAGTAGCTGCTGCTGCTGATGAATATTGAATACTTTTCTGCTACAACTTAGCTGTCACTCATTCTGTCAACAATGGTAGAGAAGTGACTTTCTAGTTTTTTTTAATCACGAAAAGAAGTTCAAAACATTCAACTGTAAGTAAGTAGGCATTTTTGAAAGTTCTCTTCGCCAAAAAGTAAACGAATAGTCATGTGCTGGAAGTTTTAGTTATATGCTGATAGTTACTACTTGTCTCTTCATTGGCCTGTCCCGTTTCAAATTGTTGAGCTCTTTTCTTTTGTTGGGTGAAGTAGAGATATTTGCCAATTGTTAGTAGTTACTTGTTCTAATGTTATCCTATTTATTAATTCATTCATGTTGGTTAAAAGTTACAGCATTTTGTAAGTGCAAGCAAAATTTTAATGTTTGACATGAGAATGCACGCTTACCATGTTTTTTGGTAATAGGACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAG</genome_strand>
        <mrna_strand>AAAAAGATAAAACTGTTGGAGAATTAAAAAGAAGATTTATATATATATGGATTATGAGGTAATTTAATTGAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTC-TATTCTAGGGTTTCTAATCCACTTGTTCAATCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723018" ref_strand="+" ref_description="SGN-E723018 [FC19AC12]">
      <seq>tcccatggggatccgaccataattaagtaaccaaaatatctcttataacacaagggagaaaaaaaaaattaaattgaaaaagggttaggctttctgttacaaaaaatggtgcaaaccttgcaacaatattcatggttggcatgatagctgcatcgatctcaataatggcaatcgttatatttgcgtgtgcaaaatcctccacgaaacgtaaaaataaaaataattcatatagtcggggtgatgggggtgatgataataaagcacaaaaaactcgtgcaaaaaaaaaaatgttagttagcactatcgaaattgcaacaactatcgtgaatattccatctacttttgatgtttgcgataataataatgatggtgcaaaaaatactcgatgtcatgatggcgatacaatgaaaaatgaagttagtattgatcgtaacgataataattatgttagcggtgacaataataataataatatgggtacaagtcatactcatgatgttaccacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="57424" stop="56334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57124" g_stop="56634" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="509" r_length="491" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E723018" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57124" e_stop="56634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTAAGTAACCAAAATATCTCTTATAACACAAGGGAGAAAAAAAAAATTAGATTGAAAAATGGTTAGGCTTTCTGTTACAAAAAATGGTGCAAACCTTGCAACAATATTCATGGTTGGCATGATAGCTGCATCGATCTCGATGATGGCGATCGTTATATTTGCGTGTGCAAAATCCTCCACGAAACGTAAGAATAAGAATAATTCATATAGTCGTGGTGATGGTGGTGATGATAATAAAGCACAAAAAACTCGTGCAAAAGAAGAAATGTTAGTTAGCACTATCGAAATTGCAACAACTATCGTGGATATTCCATCTACTTTTGATGTTTGCGATAATAATAATGATGGTGCGAAAGATACTCGATGTCATGATGGCGATACAATGAAAAATGAAGTTAGTATTGATCGTAACGATAATAATTATGTTAGCGGTGACAATAATAATAATAATATGGGTACAAGTCATACTCATGATGTTAGCACAAAT</genome_strand>
        <mrna_strand>ATAATTAAGTAACCAAAATATCTCTTATAACACAAGGGAGAAAAAAAAAATTAAATTGAAAAAGGGTTAGGCTTTCTGTTACAAAAAATGGTGCAAACCTTGCAACAATATTCATGGTTGGCATGATAGCTGCATCGATCTCAATAATGGCAATCGTTATATTTGCGTGTGCAAAATCCTCCACGAAACGTAAAAATAAAAATAATTCATATAGTCGGGGTGATGGGGGTGATGATAATAAAGCACAAAAAACTCGTGCAAAAAAAAAAATGTTAGTTAGCACTATCGAAATTGCAACAACTATCGTGAATATTCCATCTACTTTTGATGTTTGCGATAATAATAATGATGGTGCAAAAAATACTCGATGTCATGATGGCGATACAATGAAAAATGAAGTTAGTATTGATCGTAACGATAATAATTATGTTAGCGGTGACAATAATAATAATAATATGGGTACAAGTCATACTCATGATGTTACCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549114" ref_strand="+" ref_description="SGN-E549114 [TUS-67-G23](-)">
      <seq>gtcgatcccaatgatgtcaatggccgtgtttggttctactaataattgcttcgaaaagcctaggccgacgacgccaacgggtgttgttgttgctggtggaggagaaattgcttgtagcagtacaagtactgctacttcaagatcaattggtagtagaagaagaatgggtaataataatgttgatggtggcaggggaaaaacttgccctagtgttatgcttgttaaggaaatacttccgtcacttatcctacgttagtcaaggcgtgtataaactggcttgaaccccccgaaaaaaaaaaaacccctatatgtgcttgtggatttcgatatggtaaattgtgtgcaattcgtaaaggcctttgctctagttgttatatatttgtgtatgtttgttcttgtgagttatgtacgtactctagtagtactttgtgctctagcttagcacatataattaacttaattttaatatcgttgtatatattatatatatctacttaatatatttactataaaaaaacaaaaaaacacaaaaaagaaaaacaaaaactcgagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="60888" stop="59772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60588" g_stop="60073" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="546"/>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E549114" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60588" e_stop="60073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGATCCCAATGATGTCAATGGCCGTGTTTGGTTCTACTAATAATTGCTTCGAAAAGCCTAGGCCGACGACGCCAACGGGTGTTGTTGTTGCTGGTGGAGGAGAAATTGCTTGTAGCAGTACAAGTACTGCTACTTCAAGATCAATTGGTAGTAGAAGAAGAATGGGTAATAATAATGTTGATGGTGGCAGGGGAAAAACTTGCCCTAGTGTTATGCTTGTTAAGGAAATACTTCCGTCACTTATCCTACGTTAGTCAAGGCGTGTATAAACTGGCTTGAACACCACGAAAAAAAAAAAAACACTATATGTGCTTGTGGATTTCGATATGGTAAATTGTGTGCAATTCGTAAAGGCCTTTGCTCTAGTTGTTATATATTTGTGTATGTTTGTTCTTGTGAGTTATGTACGTACTCTAGTAGTACTTTGTGCTCTAGCTTAGCACATATAATTAACTTAATTTTAATATCGTTGTATATATTATATATATCTACTTAATATATTTACTATAACAAG</genome_strand>
        <mrna_strand>GTCGATCCCAATGATGTCAATGGCCGTGTTTGGTTCTACTAATAATTGCTTCGAAAAGCCTAGGCCGACGACGCCAACGGGTGTTGTTGTTGCTGGTGGAGGAGAAATTGCTTGTAGCAGTACAAGTACTGCTACTTCAAGATCAATTGGTAGTAGAAGAAGAATGGGTAATAATAATGTTGATGGTGGCAGGGGAAAAACTTGCCCTAGTGTTATGCTTGTTAAGGAAATACTTCCGTCACTTATCCTACGTTAGTCAAGGCGTGTATAAACTGGCTTGAACCCCCCGAAAAAAAAAAAACCCCTATATGTGCTTGTGGATTTCGATATGGTAAATTGTGTGCAATTCGTAAAGGCCTTTGCTCTAGTTGTTATATATTTGTGTATGTTTGTTCTTGTGAGTTATGTACGTACTCTAGTAGTACTTTGTGCTCTAGCTTAGCACATATAATTAACTTAATTTTAATATCGTTGTATATATTATATATATCTACTTAATATATTTACTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308464" ref_strand="+" ref_description="SGN-E308464 [cLEY-21-O11]">
      <seq>tcgatcccaatgatgtcaatggccgtgtttggttctactaataattgcttcgaaaagcctaggccgacgacgccaacgggtgttgttgttgctggtggaggagaaattgcttgtagcagtacaagtactgctacttcaagatcaattggtagtagaagaagaatgggtaataataatgttgatggtggcaggggaaaaacttgccctagtgttatgcttgttaaggaaatacttccgtcacttatcctacgttagtcaaggcgtgtataaactggcttgaacaccacgaaaaaaaaaaaaacactatatgtgcttgtggatttcgatatggtaaattgtgtgcaattcgtaaaggcctttgctctagttgttatatatttgtgtatgtttgttcttgtgagttatgtacgtactctagtagtactttgtgctctagcttagcacatataattaacttaattttaatatcgntgtatatattatatatatctacttaatatatttactattnaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="60887" stop="57909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60587" g_stop="60081" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="537"/>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E308464" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60587" e_stop="60081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCCCAATGATGTCAATGGCCGTGTTTGGTTCTACTAATAATTGCTTCGAAAAGCCTAGGCCGACGACGCCAACGGGTGTTGTTGTTGCTGGTGGAGGAGAAATTGCTTGTAGCAGTACAAGTACTGCTACTTCAAGATCAATTGGTAGTAGAAGAAGAATGGGTAATAATAATGTTGATGGTGGCAGGGGAAAAACTTGCCCTAGTGTTATGCTTGTTAAGGAAATACTTCCGTCACTTATCCTACGTTAGTCAAGGCGTGTATAAACTGGCTTGAACACCACGAAAAAAAAAAAAACACTATATGTGCTTGTGGATTTCGATATGGTAAATTGTGTGCAATTCGTAAAGGCCTTTGCTCTAGTTGTTATATATTTGTGTATGTTTGTTCTTGTGAGTTATGTACGTACTCTAGTAGTACTTTGTGCTCTAGCTTAGCACATATAATTAACTTAATTTTAATATCGTTGTATATATTATATATATCTACTTAATATATTTACT</genome_strand>
        <mrna_strand>TCGATCCCAATGATGTCAATGGCCGTGTTTGGTTCTACTAATAATTGCTTCGAAAAGCCTAGGCCGACGACGCCAACGGGTGTTGTTGTTGCTGGTGGAGGAGAAATTGCTTGTAGCAGTACAAGTACTGCTACTTCAAGATCAATTGGTAGTAGAAGAAGAATGGGTAATAATAATGTTGATGGTGGCAGGGGAAAAACTTGCCCTAGTGTTATGCTTGTTAAGGAAATACTTCCGTCACTTATCCTACGTTAGTCAAGGCGTGTATAAACTGGCTTGAACACCACGAAAAAAAAAAAAACACTATATGTGCTTGTGGATTTCGATATGGTAAATTGTGTGCAATTCGTAAAGGCCTTTGCTCTAGTTGTTATATATTTGTGTATGTTTGTTCTTGTGAGTTATGTACGTACTCTAGTAGTACTTTGTGCTCTAGCTTAGCACATATAATTAACTTAATTTTAATATCGNTGTATATATTATATATATCTACTTAATATATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723755" ref_strand="+" ref_description="SGN-E723755 [FC21DA06]">
      <seq>cttcttttgccgatgaaaatgcacattagaactcttagtacccaactcttacttgtactgtttcttctacttgttttatcaaaagggtttgttgtgggagatctagttcgaaagccattgggtagtagcagaaggagaaactccaatcgggtacccgaatgtggcaatttcgggtcaaaatctgattgctcgcaaaaccaaaattgtcgatggtgcaaaagtgttgttcttgatgacgcttgtttcttcaaatctgaagctgctagattaccctctcagatcttcacttgtaatcttcttagattgagataaaagttacctttttttccaattatgttgttttttatcccttgaattttgagtttttgggtgaagttcatttgagctgtgttatgagtgagtacgttttctgtttttaggcttaccattatgcttttgaagaagtaaaaagatgtgcttttgtaaataattgtgtttgaaaaatgaagaattgagtggtgctttctgatatactagagagaccagttgatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="61603" stop="62738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61903" g_stop="62438" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E723755" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61903" e_stop="62438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTGCCGATGAAAATGCACATTAGAACTCTTAGTACCCAACTCTTACTTGTACTGTTTCTTCTACTTGTTTTATCAAAAGGGTTTGTTGTGGGAGATCTAGTTCGAAAGCCATTGGGTAGTAGCAGAAGGAGAAACTCCAATCGGGTACCCGAATGTGGCAATTTCGGGTCAAAATCTGATTGCTCGCAGAACCAAAATTGTCGATGGTGCAGAAGTGTTGTTCTTGATGACGCTTGTTTCTTCAAATCTGAAGCTGCTAGATTACCCTCTCAGATCTTCACTTGTAATCTTCTTAGATTGAGATAAAAGTTACCTTTTTTTCCAATTATGTTGTTTTTTATCCCTTGAATTTTGAGTTTTTGGGTGAAGTTCATTTGAGCTGTGTTATGAGTGAGTACGTTTTCTGTTTTTAGGCTTACCATTATGCTTTTGAAGAAGTAAAAAGATGTGCTTTTGTAAATAATTGTGTTTGAAAAATGAAGAATTGAGTGGTGCTTTCTGATATACTAGAGAGACCAGTTGATTTGCTG</genome_strand>
        <mrna_strand>CTTCTTTTGCCGATGAAAATGCACATTAGAACTCTTAGTACCCAACTCTTACTTGTACTGTTTCTTCTACTTGTTTTATCAAAAGGGTTTGTTGTGGGAGATCTAGTTCGAAAGCCATTGGGTAGTAGCAGAAGGAGAAACTCCAATCGGGTACCCGAATGTGGCAATTTCGGGTCAAAATCTGATTGCTCGCAAAACCAAAATTGTCGATGGTGCAAAAGTGTTGTTCTTGATGACGCTTGTTTCTTCAAATCTGAAGCTGCTAGATTACCCTCTCAGATCTTCACTTGTAATCTTCTTAGATTGAGATAAAAGTTACCTTTTTTTCCAATTATGTTGTTTTTTATCCCTTGAATTTTGAGTTTTTGGGTGAAGTTCATTTGAGCTGTGTTATGAGTGAGTACGTTTTCTGTTTTTAGGCTTACCATTATGCTTTTGAAGAAGTAAAAAGATGTGCTTTTGTAAATAATTGTGTTTGAAAAATGAAGAATTGAGTGGTGCTTTCTGATATACTAGAGAGACCAGTTGATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554416" ref_strand="+" ref_description="SGN-E554416 [cTSC-4-D5]">
      <seq>gtttgctcacttcttcctatattcaatttagttcatcacccctgtttctttttttcttgaattatgggtgatcagcaaataggaggaggagctaatggatcaataagtttgaacattagagatgctgatgataatttgaacaataaaaattgtgctaattcagtatcacatcaagattcttcctcaaactcaacttgcagttttgtcacggttcccttcatccaaaagatcatagcagagacgttagggacgtatttcttgatatttgcggggtgtggatcagtggcggtgaatgccgataaaggaatggtgacttttccggggatatcaatagtgtgggggttggtggtgatggtcatggtttactctgttggacacatttctggtgctcattttaaccctgctgttactattgcttttgcatctaacaaaaggttcccttggaaacaggtacctgcctacgtggcagctcaagtgattggatcaacattagcaagtgggaccctacgattaatattcaatgggaaacatgatcacttcgttggaacctcacctactggatcagacgttcaatctcttgttctcgaatttataatcacattttaccttatgtttgtcatttctggtgtcgcaactgataatagagccattggagaacttgctggtcttgctgtcggggcaaccgtattgcttaatgtgatgtttgccgggccaatatcaggggcatcaatgaacccagcaaggagtttgggcccagcaatagtgtcaagccattacaaagtttatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="76430" stop="80526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76730" g_stop="76957" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76958" i_stop="77075" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77076" g_stop="77297" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="450" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77298" i_stop="78392" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78393" g_stop="78590" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="648" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78591" i_stop="78848" i_length="258">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78849" g_stop="78910" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="710" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78911" i_stop="80145" i_length="1235">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80146" g_stop="80226" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="790" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E554416" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76730" e_stop="76957"/>
          <exon e_start="77076" e_stop="77297"/>
          <exon e_start="78393" e_stop="78590"/>
          <exon e_start="78849" e_stop="78910"/>
          <exon e_start="80146" e_stop="80226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTCACTTCTTCCTATATTCAATTTAGTTCATCACCCCTGTTTCTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGGAGCTAATGGATCAATAAGTTTGAACATTAGAGATGCTGATGATAATTTGAACAATAAAAATTGTGCTAATTCAGTATCACATCAAGATTCTTCCTCAAACTCAACTTGCAGTTTTGTCACGGTTCCCTTCATCCAAAAGGTGAGTTTTATATATTTAATGAGTTTCTAATACAAAATACAGAGTTCGAATAGAAAAAAAAATAAATTAAACTCAGTGAAACTCGTATCTGATACTCTAACTCCGTATTAATGTGCAGATCATAGCAGAGACGTTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCCGATAAAGGAATGGTGACTTTTCCGGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTGTTGGACACATTTCTGGTGCTCATTTTAACCCTGCTGTTACTATTGCTTTTGCATCTAACAAAAGGTTCCCTTGGAAACAGGTATTACAACTCTCATACTTTCGCTTACAAATTGATCAATCACTCATGTAAAAATACGATATCTGAGCCTAATTCAATCTTAGAAATTGATTAGGAGTGTTTAAGTTCGTATAACACAATTTGTGTTTCCGCTCTGCAACTAATATGCGACTGTTTTTAACTCATTTGAACTAAGTTCTTTGGTTTTGACATTTTGAGATATATAGATGGTGTAATTATTTAGTTAGTTTTAAGGTAAATAATATATAGGAGATAATGTCAATATACCATGTTTGTATCTACAATATCACAAAGTACAAATATCAAAATGACTCGTCACAAACGAGGGCGGAGTTAAGAGAGGCACGCAGCAGGGGTTCTTCGGTCCTTATTTTATCGAAAAATTATATTATATATCTGAGTTTGTAAAATTAACTATTATTGTTTACACCCTTTGGTTTTAATCCTGTTCTTTTTCCTTGTCACAAACATGTTTGGTATATAAATACTTTCTCTGTCCGATATTATTTGTCATGTTATATTTTTCAAAAGTTAATTTGATTAATTTTCAAAGTTAAATTAGATCACATTAAAAAAAATTATATATTCTAAAACTATATGAAAAATACTATAAATTACAATTTTTTTTGCATATTAATATAACGAAAAAATATATCTTAAAATGTTAATCAAAGTTTTTATAGTTTGATTCTAAAAATTGAAACTATGACAAACAATACAAGAAGGCGGGGATATAAAATTATATTTTAAAATAGAAAATGTAGGTTTGTACGGATTATGAATTTATTTTTCTCATTAATTATAATAATAGCTACACATTGACTCTACTGATTTGTAATTAAGATCATGACTTTTTCTTGTAAATTTTTTCAAACTTTTATTGTTCTTCAAACTAATCCGTTAGTTTTGATTAGTTGAGAACATTAAAGATATTTCAAAGTTTTTTCCTAACCTATATTAATGACCATTACAAAATCTTAGCAAGTTCCGCTAATTAATTATCTAAATTTTTATATAAAAGAATTTTTTATTTTTTTTCATGGCACGGAGTTTTAGAAAAATAAATATTAATAAGTTTTTCTTTCTTGTTCATAGGTACCTGCCTACGTGGCAGCTCAAGTGATTGGATCAACATTAGCAAGTGGGACCCTACGATTAATATTCAATGGGAAACATGATCACTTCGTTGGAACCTCACCTACTGGATCAGACGTTCAATCTCTTGTTCTCGAATTTATAATCACATTTTACCTTATGTTTGTCATTTCTGGTGTCGCAACTGATAATAGAGCCGTAAGTATTATATTTTTTAATTTATTTTTAATTTTTTAATTAGTATATTATTTGAACTTAATTAATTAAAAACTTAAGAACGAGATCTTTAATATATATCGTACGCAAAGGGTAGTCAATTATAATCATGATTAAATTAGTAAGAAGATTGTGACTTTGTTAAATAATATGAATTTATTCAATTATACGTGGACTCTTATGAATCATGATTGATTTGATTTATTTTTTGTTTGTTTGTGAATTATTAATTATTTACAGATTGGAGAACTTGCTGGTCTTGCTGTCGGGGCAACCGTATTGCTTAATGTGATGTTTGCCGGGTAATTAAGTGATTTATTTATTACTCTTTCATTATTTTAAAATGAAAACTATATAATAAAAAAAATTATCTTATTATATAGTGTGAACAAGACTCAAAATATTTGAATAAAGGGTGTTCAAATCTTTTGACCATTGCCTTGTTAGGGTTACGTACATCCTCGTGCACAAAAAATACACGGCTTTTATTTTAGAAAAAAAAAAGATTTCATTTTTTTAATTGACTTAATACATAATTTATTTATTATTTTATTTTATGTTTTTTCTAGAGTTTCACTAATAGCATGTTCGATCAAGTTCTAGGAAAAAAATCATTTTAAAAAAGTATACTTATTTTGTAAAGTTGAGGTGTTTTGTTCAAATTTTTAATAAAGAAATGTAATGTTTTTCAATAGTAGGAAAAAACTATTATTCAGAAGCTGATAAAAATCTTTATTTCTCCGGAACCTTGGTTAAGAGAAAATAGTTGGTATAATATTTACAAAATTGATTTTTTTTTGTCAAATACAAATTGTTTATTCTTTAAAAATATTTTCCATAAAGTATTTTTGATCAAAAAAATAATTGTAATAAATAAATCTATTTTGAAAGTTTGGTCAAACAAATTATAAATATCCTCAGTTATTGAAAATAAACTCTTGGGATTGTTTGGTATGAGAAATATAAGATATTCCCTTTATTCAATAGTAGTTGTCCATTGATATAGGAAATAAGAAATATTAAATAATAGGAGTAGTTTTACCAAATAATGACCTTGATTAAATATAAGTCATCTAAAAATTGAAAAGAAAGAATAGTATTTAATAGCAAGGGTAAAAATATACACAACATGATAGATAAATTATTCGTTGTTTTTATAAACCGGTCAAAATATTGTTGAATATCCCGAAATAATATAGTGGACAACCAAAAACAAAAAGAGGGTGTAATAAACCCCAGAACAAAATTCAGGACTATCTTAGCATTTTGTGAGGGATATTAATTAGTTCCGAGATTATATATCTTACTATTTATACTATAACGATGGAATACATCATACCAATACCATATATATAACAGAATAACTGATCTCATGAAATGTCTCAATCCATGCGAAAAAAACTTTGTCTATCACATCTCCGTACGAAACAACCTCTCCCTAAAATGAACTTACCTATTTGTGATGCTATTTCATATTTGTTCTTAGTTTCTATATTAAAGTGTTATGTAACATAATTTGTTGGGCTGGAGTAAACAGGCCAATATCAGGGGCATCAATGAACCCAGCAAGGAGTTTGGGCCCAGCAATAGTGTCAAGCCATTACAAAGGTTTATGGGT</genome_strand>
        <mrna_strand>GTTTGCTCACTTCTTCCTATATTCAATTTAGTTCATCACCCCTGTTTCTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGGAGCTAATGGATCAATAAGTTTGAACATTAGAGATGCTGATGATAATTTGAACAATAAAAATTGTGCTAATTCAGTATCACATCAAGATTCTTCCTCAAACTCAACTTGCAGTTTTGTCACGGTTCCCTTCATCCAAAAG......................................................................................................................ATCATAGCAGAGACGTTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCCGATAAAGGAATGGTGACTTTTCCGGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTGTTGGACACATTTCTGGTGCTCATTTTAACCCTGCTGTTACTATTGCTTTTGCATCTAACAAAAGGTTCCCTTGGAAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGCCTACGTGGCAGCTCAAGTGATTGGATCAACATTAGCAAGTGGGACCCTACGATTAATATTCAATGGGAAACATGATCACTTCGTTGGAACCTCACCTACTGGATCAGACGTTCAATCTCTTGTTCTCGAATTTATAATCACATTTTACCTTATGTTTGTCATTTCTGGTGTCGCAACTGATAATAGAGCC..................................................................................................................................................................................................................................................................ATTGGAGAACTTGCTGGTCTTGCTGTCGGGGCAACCGTATTGCTTAATGTGATGTTTGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATCAGGGGCATCAATGAACCCAGCAAGGAGTTTGGGCCCAGCAATAGTGTCAAGCCATTACAAA-GTTTATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485010" ref_strand="+" ref_description="SGN-E485010 [cSTE-16-O5]">
      <seq>ctcacttcttcctatatcaattagttcatcaccccctgttttttttttcttgaattatgggtgatcagcaaataggaggagtggctaatggatcagtgagtttgaacattagagatgctgatgatgatttgaacaataaaaattgtgctaattcagcatcacatcaagattcttcctcaacctcaacttgcagttttgtcactattcccttcattcaaaagataatagcggagacattagggacgtatttcttgatatttgcggggtgtggatcagtggcggtgaatgcagacaaaggaatggtgacttttccagggatatcaatagtgtgggggttggtggtgatggtcatgggttactctggtggacacatttctggagctcattttaaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="76435" stop="77550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76735" g_stop="76957" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76958" i_stop="77075" i_length="118">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77076" g_stop="77250" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="396" r_length="175" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E485010" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76735" e_stop="76957"/>
          <exon e_start="77076" e_stop="77250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTCTTCCTATATTCAATTTAGTTCATCACCCCTGTTTCTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGGAGCTAATGGATCAATAAGTTTGAACATTAGAGATGCTGATGATAATTTGAACAATAAAAATTGTGCTAATTCAGTATCACATCAAGATTCTTCCTCAAACTCAACTTGCAGTTTTGTCACGGTTCCCTTCATCCAAAAGGTGAGTTTTATATATTTAATGAGTTTCTAATACAAAATACAGAGTTCGAATAGAAAAAAAAATAAATTAAACTCAGTGAAACTCGTATCTGATACTCTAACTCCGTATTAATGTGCAGATCATAGCAGAGACGTTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCCGATAAAGGAATGGTGACTTTTCCGGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTGTTGGACACATTTCTGGTGCTCATTTTAACCCTG</genome_strand>
        <mrna_strand>CTCACTTCTTCCTATAT-CAA-TTAGTTCATCACCCCCTGTTTTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGTGGCTAATGGATCAGTGAGTTTGAACATTAGAGATGCTGATGATGATTTGAACAATAAAAATTGTGCTAATTCAGCATCACATCAAGATTCTTCCTCAACCTCAACTTGCAGTTTTGTCACTATTCCCTTCATTCAAAAG......................................................................................................................ATAATAGCGGAGACATTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCAGACAAAGGAATGGTGACTTTTCCAGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGGTTACTCTGGTGGACACATTTCTGGAGCTCATTTTAACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484942" ref_strand="+" ref_description="SGN-E484942 [cSTE-15-P6]">
      <seq>ctcacttcttcctatatcaattagttcatcaccccctgttttttttttcttgaattatgggtgatcagcaaataggaggagtggctaatggatcagtgagtttgaacattagagatgctgatgatgatttgaacaataaaaattgtgctaattcagcatcacatcaagattcttcctcaacctcaacttgcagttttgtcactattcccttcattcaaaagataatagcggagacattagggacgtatttcttgatatttgcggggtgtggatcagtggcggtgaatgcagacaaaggaatggtgacttttccagggatatcaatagtgtgggggttggtggtgatggtcatggtttactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="76435" stop="77517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76735" g_stop="76957" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76958" i_stop="77075" i_length="118">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77076" g_stop="77217" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="363" r_length="142" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-E484942" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76735" e_stop="76957"/>
          <exon e_start="77076" e_stop="77217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTCTTCCTATATTCAATTTAGTTCATCACCCCTGTTTCTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGGAGCTAATGGATCAATAAGTTTGAACATTAGAGATGCTGATGATAATTTGAACAATAAAAATTGTGCTAATTCAGTATCACATCAAGATTCTTCCTCAAACTCAACTTGCAGTTTTGTCACGGTTCCCTTCATCCAAAAGGTGAGTTTTATATATTTAATGAGTTTCTAATACAAAATACAGAGTTCGAATAGAAAAAAAAATAAATTAAACTCAGTGAAACTCGTATCTGATACTCTAACTCCGTATTAATGTGCAGATCATAGCAGAGACGTTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCCGATAAAGGAATGGTGACTTTTCCGGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTG</genome_strand>
        <mrna_strand>CTCACTTCTTCCTATAT-CAA-TTAGTTCATCACCCCCTGTTTTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGTGGCTAATGGATCAGTGAGTTTGAACATTAGAGATGCTGATGATGATTTGAACAATAAAAATTGTGCTAATTCAGCATCACATCAAGATTCTTCCTCAACCTCAACTTGCAGTTTTGTCACTATTCCCTTCATTCAAAAG......................................................................................................................ATAATAGCGGAGACATTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCAGACAAAGGAATGGTGACTTTTCCAGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693088" ref_strand="+" ref_description="SGN-E693088 [LH_Ea10G14]">
      <seq>taatttccttctcaacatgtatgcacctgagcatctgataatcaatgtggatgaagctgagaagtgggaaaatttgattgagaatgcaggttctgtatttatgggaaagtggacacctgagagtgtaggagattacgcaagtggaactaaccatgttcttccaacttatgggtatgcacggatgtatggtggggtctctttggactctttcttgaagtacatcactgtgcagtctttgacagaagaagggctgaggaatcttggtccttacgtagagaaaatggccgaagttgagggtctggatgcccacaagagggctgtaaccctcagactacaggacatagaagcgagacaagtatcacactcaagatgatccctctatttgtttgcatgaaagaataaatattgagcattgcagctgaggtcgtttatagttttgttgagggggtttgaagctctatattacctgcactctgatttttgtccttccaagtgttgaatcaaacacacttgggaagaaaaaaaacagtaatgtgtaatggttaccatggttgagctagtgcatctgctgtatttgtttgaaataaaatcaaaccagatatctgagaagatgattttatcaaatctaattgtactgagtttgagggttgtattttaattggtctttcaccatgttgtattggagcaaacatgtactaatattttggattgtatcaagaggttgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="91014" stop="88749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90715" g_stop="90626" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90625" i_stop="89701" i_length="925">
            <donor d_prob="0.786" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89700" g_stop="89049" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="728" r_length="639" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E693088" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90715" e_stop="90626"/>
          <exon e_start="89700" e_stop="89049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTAATTGAGAATGCAGGTACTTTAGAGGCATGCACTTGCTAAGGTTCTCTTTTTCCATTTGGCATATCCAATCTTCTGTTGGTGTTTTTGGGCTTATTGGGCTGCTGATTGTTTATGCATATCTGAAATATGATCCACAAGCTTCTCTTGGTTTTTTTGCCACGTTAAGGCGAGATATATAGTGGATAATATGTTCATTTTTATTCTTCCTATCTTCCTGAATTTCTTATGTGAGTTTCCGCCCAGCCTTTTGTCATCCTCCTTAGAACAAAACTTCTCCATATGATTTAACAGCCTTCTTTCTTTACTTGAGATTTCTGTTTCATTTTCTTTTTCTCCCCTTGTCTCATCATCCAGCTGGTTAATTTTAGGGGTTTTAGGCTGTATTGAACTGTATGAGATCGATAGTTTTTTCTTCTTTTTATTCCTTGAACTGTATGATTTAGCCCTCAAGATGACAAATAGAAGGTTCATGATGGCTGGCTATTAGCGAGCCGGATAAGAAACTTCACTAGTGATCCTTTGAAGTGCTTGCATTTTTCTTAAATTATTCCGTTTCTCTTTTTTTTAGAAGATATTCATGCACGGGTAGTTGACTAGCCTCTTCTTTTTTCCGCATAGTGGTCAGTCAGCTTGAGTTTCTAGGATAAGCTCTAATATTTTCACTTCGGATGGTGGCTGGAATAAGCTCTAATATTTCGCTTTTGGTATTGACATACCATATTTTTCTCTGGGCTTAAAGAAATCTTGATTTACATTACAGTAGCATAGATGAGGCAAATGATGTCTTCAGTGTTCGTATGTAATACCAGGTAACTGGAAAGTAGGGTTGGAGCCTTGGAGGTTCATATTTTACCATCAATTAGCAACTTACTACTGATCAACCATGCTTCCCTTTGGTTAATCTTAACATATAAATAATCTACTCTGACTACTTGCAGGTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCTCTCTATTTGTTTGCATGAAAGAATAATTATTGAGCATTGCAGCTGAGGTCGTTTATTAGTTTTGTTGAGGGGGTTTGAAGCTCTATATTACCTGCACTCTGATTTTTTTCCTTCCAAGTGTTGAATCAAACACACTTGGGAAG--AAAAAACAGTAATGTGTAATGGTTACCATGGATGAGCTAGTGCATCTGCTGTATTTGTTTGAAATAAAATCAATCCAGATATCTGAGAAGATGATTATATCAAATCTAATTGTACTGAGTTTGAGGGTTGTATTTTAATTGGTCTTTCACCATGTTTTGTAACAAAAGTTGTATTGGAGCAAACATGTACTAATATTTTGGATTGTATCAAGAGGTTGCTTA</genome_strand>
        <mrna_strand>TAATTTCCTTCTC-AACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTGATTGAGAATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCCCTCTATTTGTTTGCATGAAAGAATAAATATTGAGCATTGCAGCTGAGGTCGTTTA-TAGTTTTGTTGAGGGGGTTTGAAGCTCTATATTACCTGCACTCTGATTTTTGTCCTTCCAAGTGTTGAATCAAACACACTTGGGAAGAAAAAAAACAGTAATGTGTAATGGTTACCATGGTTGAGCTAGTGCATCTGCTGTATTTGTTTGAAATAAAATCAAACCAGATATCTGAGAAGATGATTTTATCAAATCTAATTGTACTGAGTTTGAGGGTTGTATTTTAATTGGTCTTTCACCA-------T-------GTTGTATTGGAGCAAACATGTACTAATATTTTGGATTGTATCAAGAGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590039" ref_strand="-" ref_description="SGN-E590039 [43627]">
      <seq>agaattgcactaaggcataagccacagcttcactgtgttagcacggatatgcttgaggcaatttccttctcaaacatgtatgcacctgagcattggataatcaatgtggatgaagctgagaagtgggaaagtttaattgagaatgcaggttctgtatttatgggacagtggacacctgagagtgtaggagattatgcaagtggaactaaccatgttcttccaacttatgggtatgcacggatgtatggtggggtttctttggactctttcttgaagtacatcactgtgcagtctttgacagaagaagggctgaggaatcttggcccttacgtagagaaaatggccgaagttgagggtctggatgcccacaagagggctgtaagcctcagactacaggacatagaagcgagacaagtatcacactcaagatgatccctcgctatttgtatgcgtgaaagaataaatattgagcaattcaacctttatgcaaatctgaggctgtttatagttttgttgagggggtttgaagctctatattacctgcactctgatttttctccttccaagtgttgaattaaacacacattttgaagaaaaaacagtaatggtaatgggtaccatggatgagctggttcatctgctgtatttgttagaaataaattcaaaccaaatattctgagaagatttcacaaaatccagtagtactgagtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="91270" stop="88879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90970" g_stop="90910" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90909" i_stop="90717" i_length="193">
            <donor d_prob="0.968" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90716" g_stop="90626" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="148" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90625" i_stop="89701" i_length="925">
            <donor d_prob="0.786" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89700" g_stop="89181" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="683" r_length="535" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="723"/>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E590039" ref_strand="-">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590039" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90970" e_stop="90910"/>
          <exon e_start="90716" e_stop="90626"/>
          <exon e_start="89700" e_stop="89181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAGGTATGTTTGTTATTTGTTGATCTTGGTTGGCAGCAATTTGCACAGAGTTGGATGTATACTTGCTGTCATAAAATAATTCTGCCTGAACATAATATAAATAATCAATTACATCATATATGTGAATGCAATATTCCTTATAAATTTCTGTCAGCTACAGCCTTTTCTCTTAGACTTAAATCACAATCTTGTCCAGGCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTAATTGAGAATGCAGGTACTTTAGAGGCATGCACTTGCTAAGGTTCTCTTTTTCCATTTGGCATATCCAATCTTCTGTTGGTGTTTTTGGGCTTATTGGGCTGCTGATTGTTTATGCATATCTGAAATATGATCCACAAGCTTCTCTTGGTTTTTTTGCCACGTTAAGGCGAGATATATAGTGGATAATATGTTCATTTTTATTCTTCCTATCTTCCTGAATTTCTTATGTGAGTTTCCGCCCAGCCTTTTGTCATCCTCCTTAGAACAAAACTTCTCCATATGATTTAACAGCCTTCTTTCTTTACTTGAGATTTCTGTTTCATTTTCTTTTTCTCCCCTTGTCTCATCATCCAGCTGGTTAATTTTAGGGGTTTTAGGCTGTATTGAACTGTATGAGATCGATAGTTTTTTCTTCTTTTTATTCCTTGAACTGTATGATTTAGCCCTCAAGATGACAAATAGAAGGTTCATGATGGCTGGCTATTAGCGAGCCGGATAAGAAACTTCACTAGTGATCCTTTGAAGTGCTTGCATTTTTCTTAAATTATTCCGTTTCTCTTTTTTTTAGAAGATATTCATGCACGGGTAGTTGACTAGCCTCTTCTTTTTTCCGCATAGTGGTCAGTCAGCTTGAGTTTCTAGGATAAGCTCTAATATTTTCACTTCGGATGGTGGCTGGAATAAGCTCTAATATTTCGCTTTTGGTATTGACATACCATATTTTTCTCTGGGCTTAAAGAAATCTTGATTTACATTACAGTAGCATAGATGAGGCAAATGATGTCTTCAGTGTTCGTATGTAATACCAGGTAACTGGAAAGTAGGGTTGGAGCCTTGGAGGTTCATATTTTACCATCAATTAGCAACTTACTACTGATCAACCATGCTTCCCTTTGGTTAATCTTAACATATAAATAATCTACTCTGACTACTTGCAGGTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGAT--CTCTCTATTTGTTTGCATGAAAGAATAATTATTGAG-----C-A----T-TGC--AGCTGAGGTCGTTTATTAGTTTTGTTGAGGGGGTTTGAAGCTCTATATTACCTGCACTCTGATTTTTTTCCTTCCAAGTGTTGAATCAAACACAC-TTGGGAAGAAAAAACAGTAATGTGTAATGGTTACCATGGATGAGCTAGTGCATCTGCTGTATTTGTTTGAAATAAAATCAATCCAGATA-TCTGAGAAG</genome_strand>
        <mrna_strand>AGAAT-TGCAC-TAAGGCA-TAAGCCACAGCTTCACTGTGTTAGCAC-GGATATGCTTGAG.................................................................................................................................................................................................GCAATTTCCTTCTCAAACATGTATGCACCTGAGCATTGGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAGTTTAATTGAGAATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTATTTATGGGACAGTGGACACCTGAGAGTGTAGGAGATTATGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTTTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGCCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAAGCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCCCTCGCTATTTGTATGCGTGAAAGAATAAATATTGAGCAATTCAACCTTTATGCAAATCTGAGGCTGTTTA-TAGTTTTGTTGAGGGGGTTTGAAGCTCTATATTACCTGCACTCTGATTTTTCTCCTTCCAAGTGTTGAATTAAACACACATTTTGAAGAAAAAACAGTAATG-GTAATGGGTACCATGGATGAGCTGGTTCATCTGCTGTATTTGTTAGAAATAAATTCAAACCAAATATTCTGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276505" ref_strand="+" ref_description="SGN-E276505 [cLEN-17-G1]">
      <seq>agatagccaagtcgtactggttattgctggggatggtgttgatctaaatgccattcaagaggaaatcatgaagcaatgtcaagcacttccaaggggagaatttgcacttaaggcactaagccacagcttcactgtgttagcacgggatatgctggaggcaatttccttctcaaacatgtatgcacctgagcatctgataatcaatgtggatgaagctgagaagtgggaaaatttaattgagaatgcaggttctgtatttatgggaaagtggacacctgagagtgtaggagattacgcaagtggaactaaccatgttcttccaacttatgggtatgcacggatgtatggtggggtctctttggactctttcttgaagtacatcactgtgcagtctttgacagaagaagggctgaggaatcttggtccttacgtagagaaaatggccgaagttgagggtctggatgcccacaagagggctgtaaccctcagactacaggacatagaagcgagacaagtatcacactcaagatgatctctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="91366" stop="89109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91066" g_stop="90910" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90909" i_stop="90717" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90716" g_stop="90626" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="248" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90625" i_stop="89701" i_length="925">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89700" g_stop="89409" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="540" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E276505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91066" e_stop="90910"/>
          <exon e_start="90716" e_stop="90626"/>
          <exon e_start="89700" e_stop="89409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGCCAAGTCGTACTGGTTATTGCTGGGGATGGTGTTGATCTAAATGCCATTCAAGAGGAAATCATGAAGCAATGTCAAGCACTTCCAAGGGGAGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAGGTATGTTTGTTATTTGTTGATCTTGGTTGGCAGCAATTTGCACAGAGTTGGATGTATACTTGCTGTCATAAAATAATTCTGCCTGAACATAATATAAATAATCAATTACATCATATATGTGAATGCAATATTCCTTATAAATTTCTGTCAGCTACAGCCTTTTCTCTTAGACTTAAATCACAATCTTGTCCAGGCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTAATTGAGAATGCAGGTACTTTAGAGGCATGCACTTGCTAAGGTTCTCTTTTTCCATTTGGCATATCCAATCTTCTGTTGGTGTTTTTGGGCTTATTGGGCTGCTGATTGTTTATGCATATCTGAAATATGATCCACAAGCTTCTCTTGGTTTTTTTGCCACGTTAAGGCGAGATATATAGTGGATAATATGTTCATTTTTATTCTTCCTATCTTCCTGAATTTCTTATGTGAGTTTCCGCCCAGCCTTTTGTCATCCTCCTTAGAACAAAACTTCTCCATATGATTTAACAGCCTTCTTTCTTTACTTGAGATTTCTGTTTCATTTTCTTTTTCTCCCCTTGTCTCATCATCCAGCTGGTTAATTTTAGGGGTTTTAGGCTGTATTGAACTGTATGAGATCGATAGTTTTTTCTTCTTTTTATTCCTTGAACTGTATGATTTAGCCCTCAAGATGACAAATAGAAGGTTCATGATGGCTGGCTATTAGCGAGCCGGATAAGAAACTTCACTAGTGATCCTTTGAAGTGCTTGCATTTTTCTTAAATTATTCCGTTTCTCTTTTTTTTAGAAGATATTCATGCACGGGTAGTTGACTAGCCTCTTCTTTTTTCCGCATAGTGGTCAGTCAGCTTGAGTTTCTAGGATAAGCTCTAATATTTTCACTTCGGATGGTGGCTGGAATAAGCTCTAATATTTCGCTTTTGGTATTGACATACCATATTTTTCTCTGGGCTTAAAGAAATCTTGATTTACATTACAGTAGCATAGATGAGGCAAATGATGTCTTCAGTGTTCGTATGTAATACCAGGTAACTGGAAAGTAGGGTTGGAGCCTTGGAGGTTCATATTTTACCATCAATTAGCAACTTACTACTGATCAACCATGCTTCCCTTTGGTTAATCTTAACATATAAATAATCTACTCTGACTACTTGCAGGTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCTCTCTA</genome_strand>
        <mrna_strand>AGATAGCCAAGTCGTACTGGTTATTGCTGGGGATGGTGTTGATCTAAATGCCATTCAAGAGGAAATCATGAAGCAATGTCAAGCACTTCCAAGGGGAGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAG.................................................................................................................................................................................................GCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTAATTGAGAATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241163" ref_strand="+" ref_description="SGN-E241163 [cLED-26-D14]">
      <seq>cttctgaagtccttgttatagctgacaagcattccagtcctgtccatgtggcagcagatttactttcacaggcggagcatgggccagatagccaagtcgtactggttattgctggggatggtgttgatctaaatgccattcaagaggaaatcatgaagcaatgtcaagcacttccaaggggagaatttgcacttaaggcactaagccacagcttcactgtgttagcacgggatatgctggaggcaatttccttctcaaacatgtatgcacctgagcatctgataatcaatgtggatgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="91707" stop="90356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91407" g_stop="91337" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91336" i_stop="91081" i_length="256">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91080" g_stop="90910" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="242" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90909" i_stop="90717" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90716" g_stop="90656" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="303" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E241163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91407" e_stop="91337"/>
          <exon e_start="91080" e_stop="90910"/>
          <exon e_start="90716" e_stop="90656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGAAGTCCTTGTTATAGCTGACAAGCATTCCAGTCCTGTCCATGTGGCAGCAGATTTACTTTCACAGGTATCAGCTCCATTTTCACTGCTTGATCAAGTTTCCATTCATACTTTCTGTGTCTGAATCAAGTGCTCTTGTATTTCACATTGGGACAGCTTATGTCTCTTCTGAGATTAAAATAAGAGAAAATTTAAGCTATTCACAGTGAAGAAGATCAACTGTTAATAGATTAAACTGGAACTTCCATCAATTCCTATCTATCATTGTGGCAAAGACTGGGCTACCTCTATTTATTCTTATCACCTCAAATGCATTTTTTCAGGCGGAGCATGGGCCAGATAGCCAAGTCGTACTGGTTATTGCTGGGGATGGTGTTGATCTAAATGCCATTCAAGAGGAAATCATGAAGCAATGTCAAGCACTTCCAAGGGGAGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAGGTATGTTTGTTATTTGTTGATCTTGGTTGGCAGCAATTTGCACAGAGTTGGATGTATACTTGCTGTCATAAAATAATTCTGCCTGAACATAATATAAATAATCAATTACATCATATATGTGAATGCAATATTCCTTATAAATTTCTGTCAGCTACAGCCTTTTCTCTTAGACTTAAATCACAATCTTGTCCAGGCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTG</genome_strand>
        <mrna_strand>CTTCTGAAGTCCTTGTTATAGCTGACAAGCATTCCAGTCCTGTCCATGTGGCAGCAGATTTACTTTCACAG................................................................................................................................................................................................................................................................GCGGAGCATGGGCCAGATAGCCAAGTCGTACTGGTTATTGCTGGGGATGGTGTTGATCTAAATGCCATTCAAGAGGAAATCATGAAGCAATGTCAAGCACTTCCAAGGGGAGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAG.................................................................................................................................................................................................GCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404444" ref_strand="+" ref_description="SGN-E404444 [PPC-14-E3]">
      <seq>gagagagagagagaacatgcatggcgtcagatgtaaacgtgtggctaggagcattgcctctgttgggctttatgttcccggtggaactgctgttttaccttctacagctctgatgctttcagttccagcacaaattgctggatgtaaaacagttgtacttgcaactccaccttctcgggatggcagtatttgcaaggaagtgctttattgtgccaagaaagcaggtgtgacccacatccttaaagctggaggcgctcaggcaatttctgcactggcctggggcactgaatcatgcccaaaggttgagaagatatatgggcctgggaaccagtatgtcactgctgcaaaaatgattctgcagaacagcgaagcgatggtttcaattgacatgcctgctgggccttccgaagtccttgttatagctgacaagcattccagtcctgtccatgtggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="93752" stop="91053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93583" g_stop="93560" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.792"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93446" g_stop="93345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="124" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93344" i_stop="93243" i_length="102">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93242" g_stop="93171" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="196" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93170" i_stop="93094" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93093" g_stop="93031" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="259" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93030" i_stop="92894" i_length="137">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92893" g_stop="92852" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="301" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92851" i_stop="91647" i_length="1205">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91646" g_stop="91587" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="361" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91586" i_stop="91448" i_length="139">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91447" g_stop="91353" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="456" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E404444" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93583" e_stop="93560"/>
          <exon e_start="93446" e_stop="93345"/>
          <exon e_start="93242" e_stop="93171"/>
          <exon e_start="93093" e_stop="93031"/>
          <exon e_start="92893" e_stop="92852"/>
          <exon e_start="91646" e_stop="91587"/>
          <exon e_start="91447" e_stop="91353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGTTGTTGAGAACATGCATGTAAGTTTTGTGGATATTATACAGGATTGATCTTAGTTGTGTGGCCTTATATAACAACATTATCTTTATACTTTTATTTTTCCTTTTAACTTCTGTATTTCCTACTTTGTCAGGGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTTGTATGGTGATTCAATTTTTCGTGTTAATTTTCTGCTCTTATTAATCATTCTTTCAATGCTAATTCCCTAAGTACAAAATTATCAATTTTTCCCTTTGGCCAGCCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAGGTACTTGCTTACCATCTCACTTTTTTAGTATGACTTAAAAGTATCAGTCACCATTTATTTGGATGCCTTTCTTGTAGGAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAGGTATATGATAATATGCTTCCTTGATCTTGCATTCATCAGCCGATGTTGCGTCTGAATCATTTTCAGTTAGTTTCTTAATTTTTGCAAACACCTTTTACTTACTGGGACACTTACTGTAACTTTCTTAAATCCCACAGGCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCCCAAAGGTACTACTTTCACCTTAAGGAATTGAAACCTGGCATATTGTATCATACAAGCACTAGTATACTTCTATCGTTTTGCTGAGTTTACGCATGAGACACAGAATAATGTAATTAACACGAGTACATTCAGACAATAAATCCTGGCTTGAGTAGACACTAGACACATATTATATTTCTGAAGTGTTCCTTTTCCTTTTTGTATAAAGTAAGAGATTTATCATTGTGTGGACATCAAGAAGATGCCAAATTACAAAGGTATAACCAGTTAGCTTCAGTACAGAAGGGAAGAAACATTTCAGCACTGGTACAAGTAATCTAAGCTAGAACTAAGGAGTGAACAAAGTCCAGAAACATGTCAATCCTATTAACATGTGAAAGAAATTCCAACTAAACAACTTGACTAAACATTGTCTTTAGAGATTGGGTAGGAGTTGATAACTTGATATACCATCAAAGCATGTGTGATTTTTTTGCTAGGTCGATGAACACCATCTGTAAGTCATTGTTATTATTATTAGGATTAGAATCCAGGTGAAGGAGTTTTTCTTAGTTAGATACCGAAAAAGAAAACTACTTTTTTTGTGTTGAGCAAATCTAATTAAGGCTTAATAAATCAAGGATGGGACTAAGAAGGCTAGTTAGTACTATTGGTTTTAGTCAAAAGCACAAGAGAACGAGAATAGAAGAATTTAGGCTGGGGAGGCAAGCAGGTCCAGTCTGATATTACTCAGGAAAGTCTTCTTTTTTTTCTGCAGTGGTTTAGGGGCAGTTTTATCCCATAAAATACAGAAAAAGTTTTTTCGAGTATTTGAGAATATGCCTTTTGTTTTTTCTAAAAAAGTTCTCTGGTACTTGGCTGAAAGTTATATTTTATTAGGGTTACATTCACTTCTCAGGATAGATATCAAGTAAGATGCCCCTATGTACAGTGTATGCTATTGACCCTTATTGGTACATTGACAATATTTCTTACAAAGAAAAGTAATCATGGATTGTACAAGCACATAAACATTGATCTGTTCCTTATACATCTGTAAAGCTTCTACCCTCAATGTCCTTGAATCCTCAATCCTGTGGTTGCCTTGTATACTTTAATGAAGTTGGTTTCCATTCTTATTGTCCTTTGGATCACTTTACAATCGAACTTTCCTCTTCTTTCTTTGATAATATAAAAGGGGAAGCATTATGTACATTGCCATCTATGCCAGGTTGAGAAGATATATGGGCCTGGAAACCAGTATGTCACTGCTGCAAAAATGATTCTGCAGGTATTGGTTTCAAGTAAGAGACAATCTTAGGTTAGGGATATTTGCAGTGTAGATAAATGTCACTCGTAATAAATACGCTGCGAAGACTAATGTCTTCACTTAAAATTGCCTTTTGCTAAGTAATAGTCTCTCTCAACAGAACAGCGAAGCGATGGTTTCAATTGACATGCCTGCTGGGCCTTCTGAAGTCCTTGTTATAGCTGACAAGCATTCCAGTCCTGTCCATGTGGCAGC</genome_strand>
        <mrna_strand>GAGAGAG-AG-AGAGAACATGCAT.................................................................................................................GGCGTCAGATGTAAACGTGTGGCTAGGAGCATTGCCTCTGTTGGGCTTTATGTTCCCGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT......................................................................................................CCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGTATTTGCAAG.............................................................................GAAGTGCTTTATTGTGCCAAGAAAGCAGGTGTGACCCACATCCTTAAAGCTGGAGGCGCTCAG.........................................................................................................................................GCAATTTCTGCACTGGCCTGGGGCACTGAATCATGCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAAGATATATGGGCCTGGGAACCAGTATGTCACTGCTGCAAAAATGATTCTGCAG...........................................................................................................................................AACAGCGAAGCGATGGTTTCAATTGACATGCCTGCTGGGCCTTCCGAAGTCCTTGTTATAGCTGACAAGCATTCCAGTCCTGTCCATGTGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689083" ref_strand="+" ref_description="SGN-E689083 [t3_tus_80_A16]">
      <seq>ctcactctgctgtgacaccgccggcgacgatctgcttaactcttcatctttctccggcgacgacgtataattaacattgatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgcaatactgtattttatcggaaatattcttatctacctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcggagcttacaacctctgaggttgacagcctcaaggctcgtcctcgcattgatttctcctccattttcggcacagttcaacccattgttgacgatgttcgtaatagaggtgatgctgcagttaaagattacacatcgcggtttgacaaagttgtactggataagatagttgaagatgtcagtgagcttccagatcccgagctcgattcatctgttcgcgaagcatttgatgtggcatataacaacatatatgcctttcatgctgctcaaaagcctgttgagaaagttgttgagaacatgcatggggtcagatgtaaacgtgtcgctnggagcattgcctctgtagggctttatgttcctggtggaactgctgttttaccttctacagctctgatgctttcagttccagcacaaattgctggatgtaaaacagttgtacttgcaactccaccttctcgggatggcagcatttgcaaggaagtgctttattgtgccaaaaaagcgggtgtgacccacatccttaaagctggaggtgctcaggcaatttctgcaatggcctggggcactgaatcatgcccaaaggttgaaaaaatatatgggccctggaaaccagtatgtcattgctgcaaaaatgattctgcagaacagcgaaacgatggtttcaattgacatgcctgctgggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95900" stop="91105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95600" g_stop="95529" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="191" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="313" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94762" g_stop="94710" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="366" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="439" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93661" g_stop="93560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="541" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93446" g_stop="93345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="643" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93344" i_stop="93243" i_length="102">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93242" g_stop="93171" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="715" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93170" i_stop="93094" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="93093" g_stop="93031" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="778" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="93030" i_stop="92894" i_length="137">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92893" g_stop="92852" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="820" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="92851" i_stop="91647" i_length="1205">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="91646" g_stop="91587" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="881" r_length="61" r_score="0.917"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="91586" i_stop="91448" i_length="139">
            <donor d_prob="0.907" d_score="0.94"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="91447" g_stop="91405" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="924" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E689083" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>923</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95600" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="94762" e_stop="94710"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93560"/>
          <exon e_start="93446" e_stop="93345"/>
          <exon e_start="93242" e_stop="93171"/>
          <exon e_start="93093" e_stop="93031"/>
          <exon e_start="92893" e_stop="92852"/>
          <exon e_start="91646" e_stop="91587"/>
          <exon e_start="91447" e_stop="91405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCATGTAAGTTTTGTGGATATTATACAGGATTGATCTTAGTTGTGTGGCCTTATATAACAACATTATCTTTATACTTTTATTTTTCCTTTTAACTTCTGTATTTCCTACTTTGTCAGGGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTTGTATGGTGATTCAATTTTTCGTGTTAATTTTCTGCTCTTATTAATCATTCTTTCAATGCTAATTCCCTAAGTACAAAATTATCAATTTTTCCCTTTGGCCAGCCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAGGTACTTGCTTACCATCTCACTTTTTTAGTATGACTTAAAAGTATCAGTCACCATTTATTTGGATGCCTTTCTTGTAGGAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAGGTATATGATAATATGCTTCCTTGATCTTGCATTCATCAGCCGATGTTGCGTCTGAATCATTTTCAGTTAGTTTCTTAATTTTTGCAAACACCTTTTACTTACTGGGACACTTACTGTAACTTTCTTAAATCCCACAGGCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCCCAAAGGTACTACTTTCACCTTAAGGAATTGAAACCTGGCATATTGTATCATACAAGCACTAGTATACTTCTATCGTTTTGCTGAGTTTACGCATGAGACACAGAATAATGTAATTAACACGAGTACATTCAGACAATAAATCCTGGCTTGAGTAGACACTAGACACATATTATATTTCTGAAGTGTTCCTTTTCCTTTTTGTATAAAGTAAGAGATTTATCATTGTGTGGACATCAAGAAGATGCCAAATTACAAAGGTATAACCAGTTAGCTTCAGTACAGAAGGGAAGAAACATTTCAGCACTGGTACAAGTAATCTAAGCTAGAACTAAGGAGTGAACAAAGTCCAGAAACATGTCAATCCTATTAACATGTGAAAGAAATTCCAACTAAACAACTTGACTAAACATTGTCTTTAGAGATTGGGTAGGAGTTGATAACTTGATATACCATCAAAGCATGTGTGATTTTTTTGCTAGGTCGATGAACACCATCTGTAAGTCATTGTTATTATTATTAGGATTAGAATCCAGGTGAAGGAGTTTTTCTTAGTTAGATACCGAAAAAGAAAACTACTTTTTTTGTGTTGAGCAAATCTAATTAAGGCTTAATAAATCAAGGATGGGACTAAGAAGGCTAGTTAGTACTATTGGTTTTAGTCAAAAGCACAAGAGAACGAGAATAGAAGAATTTAGGCTGGGGAGGCAAGCAGGTCCAGTCTGATATTACTCAGGAAAGTCTTCTTTTTTTTCTGCAGTGGTTTAGGGGCAGTTTTATCCCATAAAATACAGAAAAAGTTTTTTCGAGTATTTGAGAATATGCCTTTTGTTTTTTCTAAAAAAGTTCTCTGGTACTTGGCTGAAAGTTATATTTTATTAGGGTTACATTCACTTCTCAGGATAGATATCAAGTAAGATGCCCCTATGTACAGTGTATGCTATTGACCCTTATTGGTACATTGACAATATTTCTTACAAAGAAAAGTAATCATGGATTGTACAAGCACATAAACATTGATCTGTTCCTTATACATCTGTAAAGCTTCTACCCTCAATGTCCTTGAATCCTCAATCCTGTGGTTGCCTTGTATACTTTAATGAAGTTGGTTTCCATTCTTATTGTCCTTTGGATCACTTTACAATCGAACTTTCCTCTTCTTTCTTTGATAATATAAAAGGGGAAGCATTATGTACATTGCCATCTATGCCAGGTTGAGAAGATATATGGG-CCTGGAAACCAGTATGTCACTGCTGCAAAAATGATTCTGCAGGTATTGGTTTCAAGTAAGAGACAATCTTAGGTTAGGGATATTTGCAGTGTAGATAAATGTCACTCGTAATAAATACGCTGCGAAGACTAATGTCTTCACTTAAAATTGCCTTTTGCTAAGTAATAGTCTCTCTCAACAGAACAGCGAAGCGATGGTTTCAATTGACATGCCTGCTGGGCCTT</genome_strand>
        <mrna_strand>CTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATT.......................................................................................................................................................................................................................AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA..........................................................................................................GTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG.......................................................................................................CTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCAT.................................................................................................................GGGGTCAGATGTAAACGTGTCGCTNGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT......................................................................................................CCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAG.............................................................................GAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAG.........................................................................................................................................GCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAAATATATGGGCCCTGGAAACCAGTATGTCATTGCTGCAAAAATGATTCTGCAG...........................................................................................................................................AACAGCGAAACGATGGTTTCAATTGACATGCCTGCTGGGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604553" ref_strand="+" ref_description="SGN-E604553 [74689]">
      <seq>ccacaaagtacacaactcactctgctgtgacaccgccggcgacgatctgcttaactcctcatctttctccggcgacgacgtctacttaacatagatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgcaatactgtattttatcggaaatattcttatctacctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcggagcttacaacttctgaggttgacagcctcaaggctcgtcctcgcattgacttctcctccattttcggcactctacacatcacggtttgacaaagttgtactggataagatagttgaagatgtcaatgagcttccagatcctgagctcgattcatctgttcgagaagcatttgatgtggcatataacaacatatatgcctttcatgctgctcaaaagcctgttgagaaagttgtggagaacatgcatggcgtcagatgtaaacgtgtggctaggagcattgcctctgttgggctttatgttcccggtggaactgctgttttaccttctacagctctgatgctttcagttcacaaattgctggatgtaaaacagttgtacttgcaactccaccttctcgggatggcagtatttgcaaggaagtgcttattgtgctacgaaagcaggtgtgacccacatccttaaagctggaggtgctcaggcaatttctgcaatggcctgcggcactgaatcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95915" stop="92557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95615" g_stop="95529" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.712" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="206" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="328" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94868" i_stop="93838" i_length="1031">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="401" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93661" g_stop="93560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="503" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93446" g_stop="93345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="605" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93344" i_stop="93239" i_length="106">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93238" g_stop="93171" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="673" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93170" i_stop="93094" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93093" g_stop="93031" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="735" r_length="62" r_score="0.921"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93030" i_stop="92894" i_length="137">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92893" g_stop="92857" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="772" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E604553" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95615" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93560"/>
          <exon e_start="93446" e_stop="93345"/>
          <exon e_start="93238" e_stop="93171"/>
          <exon e_start="93093" e_stop="93031"/>
          <exon e_start="92893" e_stop="92857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCATGTAAGTTTTGTGGATATTATACAGGATTGATCTTAGTTGTGTGGCCTTATATAACAACATTATCTTTATACTTTTATTTTTCCTTTTAACTTCTGTATTTCCTACTTTGTCAGGGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTTGTATGGTGATTCAATTTTTCGTGTTAATTTTCTGCTCTTATTAATCATTCTTTCAATGCTAATTCCCTAAGTACAAAATTATCAATTTTTCCCTTTGGCCAGCCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAGGTACTTGCTTACCATCTCACTTTTTTAGTATGACTTAAAAGTATCAGTCACCATTTATTTGGATGCCTTTCTTGTAGGAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAGGTATATGATAATATGCTTCCTTGATCTTGCATTCATCAGCCGATGTTGCGTCTGAATCATTTTCAGTTAGTTTCTTAATTTTTGCAAACACCTTTTACTTACTGGGACACTTACTGTAACTTTCTTAAATCCCACAGGCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCC</genome_strand>
        <mrna_strand>CCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCCTCATCTTTCTCCGGCGACGACGTCTACTT.......................................................................................................................................................................................................................AACATAGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACTTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGACTTCTCCTCCATTTTCGGCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACATCACGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAATGAGCTTCCAGATCCTGAG.......................................................................................................CTCGATTCATCTGTTCGAGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTGGAGAACATGCAT.................................................................................................................GGCGTCAGATGTAAACGTGTGGCTAGGAGCATTGCCTCTGTTGGGCTTTATGTTCCCGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT..........................................................................................................CACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGTATTTGCAAG.............................................................................GAAGTGC-TTATTGTGCTACGAAAGCAGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAG.........................................................................................................................................GCAATTTCTGCAATGGCCTGCGGCACTGAATCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486339" ref_strand="+" ref_description="SGN-E486339 [cSTE-21-J24]">
      <seq>ctgctgtgacaccgcccgcgacgatctgcttaactcctcatctttctccggcgacgacgtctacttaacatagatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgcaatactgtattttatcggaaatattcttatctacctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcggagcttacaacttctgaggttgacagcctcaaggctcgtcctcgcattgacttctcctctattttcggcactgttcaacccattgttgacgatgttcgtaatagaggtgatgctgcagttaaagactacacatcacggtttgacaaagttgtactggataagatagttgaagatgtcaatgagcttccagatcctgagctcgattcatctgttcgagaagcatttgatgtggcatataacaacatatatgcctttcatgctgctcaaaagcctgttgagaaagttgtggagaacatgcatggcgtcagatgtaaacgtgtggctaggagcattgcctctgttgggctttatgttcccggtggaactgctgttttaccttctacagctctgatgctttcagttccagcacaaattgctggatgtaaaacagttgtacttgcaactccaccttctcgggatggcagtatttgcaaggaagtgctttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95894" stop="92861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95594" g_stop="95529" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.712" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="185" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="307" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94762" g_stop="94710" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="360" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="433" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93661" g_stop="93560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="535" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93446" g_stop="93345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="637" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93344" i_stop="93243" i_length="102">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93242" g_stop="93171" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="709" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93170" i_stop="93094" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="93093" g_stop="93079" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="724" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E486339" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95594" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="94762" e_stop="94710"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93560"/>
          <exon e_start="93446" e_stop="93345"/>
          <exon e_start="93242" e_stop="93171"/>
          <exon e_start="93093" e_stop="93079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCATGTAAGTTTTGTGGATATTATACAGGATTGATCTTAGTTGTGTGGCCTTATATAACAACATTATCTTTATACTTTTATTTTTCCTTTTAACTTCTGTATTTCCTACTTTGTCAGGGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTTGTATGGTGATTCAATTTTTCGTGTTAATTTTCTGCTCTTATTAATCATTCTTTCAATGCTAATTCCCTAAGTACAAAATTATCAATTTTTCCCTTTGGCCAGCCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAGGTACTTGCTTACCATCTCACTTTTTTAGTATGACTTAAAAGTATCAGTCACCATTTATTTGGATGCCTTTCTTGTAGGAAGTGCTTTATTGT</genome_strand>
        <mrna_strand>CTGCTGTGACACCGCCCGCGACGATCTGCTTAACTCCTCATCTTTCTCCGGCGACGACGTCTACTT.......................................................................................................................................................................................................................AACATAGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACTTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGACTTCTCCTCTATTTTCGGCACT..........................................................................................................GTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACATCACGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAATGAGCTTCCAGATCCTGAG.......................................................................................................CTCGATTCATCTGTTCGAGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTGGAGAACATGCAT.................................................................................................................GGCGTCAGATGTAAACGTGTGGCTAGGAGCATTGCCTCTGTTGGGCTTTATGTTCCCGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT......................................................................................................CCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGTATTTGCAAG.............................................................................GAAGTGCTTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316053" ref_strand="+" ref_description="SGN-E316053 [cTOA-23-M8]">
      <seq>tacttcccaatagtcaattgaaccaccaccacaaagtacacaactcactctgctgtgacaccgccggcgacgatctgcttaactcttcatctttctccggcgacgacgtataattaacattgatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgcaatactgtattttatcggaaatattcttatctacctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcggagcttacaacctctgaggttgacagcctcaaggctcgtcctcgcattgatttctcctccattttcggcacagttcaacccattgttgacgatgttcgtaatagaggtgatgctgcagttaaagattacacatcgcggtttgacaaagttgtactggataagatagttgaagatgtcagtgagcttccagatcccgagctcgattcatctgttcgcgaagcatttgatgtggcatataacaacatatatgcctttcatgctgctcaaaagcctgttgagaaagttgttgagaacatgcatggggtcagatgtaaacgtgtcgctaggagcattgcctctgtagggctttatgttcctggtggaactgctgttttaccttctacagctctgatgctttcagttccagcacaaattgctggatgtaaaacagttgtacttgcaactccaccttctcgggatggcagcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95943" stop="92875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95643" g_stop="95529" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="234" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="356" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94762" g_stop="94710" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="409" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93661" g_stop="93560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="584" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93446" g_stop="93345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="686" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93344" i_stop="93243" i_length="102">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93242" g_stop="93176" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="753" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E316053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95643" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="94762" e_stop="94710"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93560"/>
          <exon e_start="93446" e_stop="93345"/>
          <exon e_start="93242" e_stop="93176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCATGTAAGTTTTGTGGATATTATACAGGATTGATCTTAGTTGTGTGGCCTTATATAACAACATTATCTTTATACTTTTATTTTTCCTTTTAACTTCTGTATTTCCTACTTTGTCAGGGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTTGTATGGTGATTCAATTTTTCGTGTTAATTTTCTGCTCTTATTAATCATTCTTTCAATGCTAATTCCCTAAGTACAAAATTATCAATTTTTCCCTTTGGCCAGCCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTT</genome_strand>
        <mrna_strand>TACTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATT.......................................................................................................................................................................................................................AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA..........................................................................................................GTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG.......................................................................................................CTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCAT.................................................................................................................GGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT......................................................................................................CCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366249" ref_strand="+" ref_description="SGN-E366249 [cLPT-1-K20]">
      <seq>ctcgtgccgatctttctccggcgaccgacctctaattaaccattgatggacctgcaaccattctatcattgagtaggtcctgtagcttggctagtaatcttcgggccaattcctaccaccgccaatacctgtattttatcggaaatattcttatctaccctgcagggttaattcgtaagtcaattaggtgcctcaatgaagtcgtataagttatcggagcttaccaacctctgaggttgaccagcctcaaggctcgtcctcgcattgatttctcctccattttcggcaccagttcaacccccattgttgatgatgttcgtaatagaggtgatgctgcagttaaagattaccaccatcgcggtttgaccaaagttgtcctggataagatagttgaagatgtcagtgagccttccgatcccgagctcgattcatctgttcgagaagcatttgatgtggcatataacaccatatatgcctttcatgctgctcaaaagcctgttgagaaagttgttgagaaccatcatggggtcagatgtaaacgtgtcgctaggagcattgcctctgtagggctttatgttcctggtggaactgctgttttaccttctacagctctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95855" stop="93053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="165" r_length="127" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="0.78"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="291" r_length="126" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94762" g_stop="94710" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="346" r_length="55" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="422" r_length="76" r_score="0.863"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93661" g_stop="93560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="524" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93446" g_stop="93353" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="618" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E366249" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="94762" e_stop="94710"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93560"/>
          <exon e_start="93446" e_stop="93353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGATGGA-CTGCAA-CATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGC-AATTCCTA-CA-CG-CAATA-CTGTATTTTATCGGAAATATTCTTATCTA-CCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTG-CTCAATGAAGTCGTATAAGTTATCGGAGCTTA-CAACCTCTGAGGTTGA-CAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCA-CAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAA--CCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTA-CA-CATCGCGGTTTGA-CAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCATGTAAGTTTTGTGGATATTATACAGGATTGATCTTAGTTGTGTGGCCTTATATAACAACATTATCTTTATACTTTTATTTTTCCTTTTAACTTCTGTATTTCCTACTTTGTCAGGGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGC</genome_strand>
        <mrna_strand>ACCATTGATGGACCTGCAACCATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCCAATTCCTACCACCGCCAATACCTGTATTTTATCGGAAATATTCTTATCTACCCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCCTCAATGAAGTCGTATAAGTTATCGGAGCTTACCAACCTCTGAGGTTGACCAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACCA..........................................................................................................GTTCAACCCCCATTGTTGATGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCACCATCGCGGTTTGACCAAAGTTGTCCTGGATAAGATAGTTGAAGATGTCAGTGAGCCTTCCGATCCCGAG.......................................................................................................CTCGATTCATCTGTTCGAGAAGCATTTGATGTGGCATATAACACCATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACCATCAT.................................................................................................................GGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324295" ref_strand="+" ref_description="SGN-E324295 [cTOC-4-F12]">
      <seq>tcactctgctgtgacaccgccggcgacgatctgcttaactcttcatctttctccggcgacgacgtataattaacattgatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgcaatactgtattttatcggaaatattcttatctacctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcggagcttacaacctctgaggttgacagcctcaaagctcgtcctcgcattgatttctcctccattttcggcacagttcaacccattgttgacgatgttcgtaatagaggtgatgctgcagttaaagattacacatcgcggtttgacaaagttgtactggataagatagttgaagatgtcagtgagcttccagatcccgagctcgattcatctgttcgcgaagcatttgatgtggcatataacaacatatatgcctttcatgctgctcaaaagcctgttgagaaagttgttgagaacatgcatggggtcagatgttaacgtgtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95899" stop="93259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95599" g_stop="95529" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="190" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="312" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94762" g_stop="94710" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="365" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="438" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93661" g_stop="93560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="540" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93446" g_stop="93424" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="563" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E324295" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95599" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="94762" e_stop="94710"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93560"/>
          <exon e_start="93446" e_stop="93424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCATGTAAGTTTTGTGGATATTATACAGGATTGATCTTAGTTGTGTGGCCTTATATAACAACATTATCTTTATACTTTTATTTTTCCTTTTAACTTCTGTATTTCCTACTTTGTCAGGGGGTCAGATGTAAACGTGTCGC</genome_strand>
        <mrna_strand>TCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATT.......................................................................................................................................................................................................................AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAAGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA..........................................................................................................GTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG.......................................................................................................CTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCAT.................................................................................................................GGGGTCAGATGTTAACGTGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358771" ref_strand="+" ref_description="SGN-E358771 [cLHT-24-E10]">
      <seq>tgacaccgccggcgacgatctgcttaactcctcatctttctccggcgtcgatctgcttaactcctcatctttctccggagaagacgtataattaacattgatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgccatactgtattttatcggaaatattcttatctgcctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcagagcttacaacctctgaggttgacagcctcaaggctcgtcctcgcattgatttctcctccattttcggcacagttcaacccattgttgatgatgttcgtaatagaggtgatgctgcagttaaagattacacatcgcggtttgacaaagttgtactggataagatagttgaagatgtcagtgagcttccagatcccgagctcgattcatctgttcgagaagcatttgatgtggcatataacaacatatatgcctttcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95888" stop="93299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95582" g_stop="95529" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="93" r_length="54" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="212" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="334" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94762" g_stop="94710" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="387" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="460" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93661" g_stop="93599" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="523" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E358771" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95582" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="94762" e_stop="94710"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCT</genome_strand>
        <mrna_strand>CTCCGGCGTCGATCTGCTTAACTCCTCATCTTTCTCCGGAGAAGACGTATAATT.......................................................................................................................................................................................................................AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCCATACTGTATTTTATCGGAAATATTCTTATCTGCCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCAGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA..........................................................................................................GTTCAACCCATTGTTGATGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG.......................................................................................................CTCGATTCATCTGTTCGAGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324802" ref_strand="+" ref_description="SGN-E324802 [cTOC-8-O22]">
      <seq>tcaattgaaccaccaccacaaagtacacaactcactctgctgtgacaccgccggcgacgatctgcttaactcttcatctttctccggcgacgacgtataattaacattgatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgcaatactgtattttatcggaaatattcttatctacctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcggagcttacaacctctgaggttgacagcctcaaggctcgtcctcgcattgatttctcctccattttcggcacagttcaacccattgttgacgatgttcgtaatagaggtgatgctgcagttaaagattacacatcgcggtttgacaaagttgtactggataagatagttgaagatgtcagtgagcttccagatcccgagctcgattcatctgttcgcgaagcatttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95930" stop="93330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95630" g_stop="95529" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="221" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="343" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94762" g_stop="94710" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="396" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="469" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93661" g_stop="93630" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="501" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E324802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95630" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="94762" e_stop="94710"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGT</genome_strand>
        <mrna_strand>TCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATT.......................................................................................................................................................................................................................AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA..........................................................................................................GTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG.......................................................................................................CTCGATTCATCTGTTCGCGAAGCATTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366554" ref_strand="+" ref_description="SGN-E366554 [cLPT-13-K15]">
      <seq>aacctggtttctccttcccaatagtcaattgaaccaccaccacaaagtacacaactcactctgctgtgacaccgccggcgacgatctgcttaacttctcatctttctccggcgacgacgtctaattaacattgatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgcaatactgtattttatcggaaatattcttatctacctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcggagcttacaacctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95955" stop="94625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95655" g_stop="95529" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="245" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94925" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="311" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-E366554" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95655" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGGGTTTCTACTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTG</genome_strand>
        <mrna_strand>AACCT-GGTTTCTCCTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTTCTCATCTTTCTCCGGCGACGACGTCTAATT.......................................................................................................................................................................................................................AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>58</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5753" PGL_stop="6455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5753" e_stop="6455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="5753" e_stop="6455" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5753" stop="6455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATCAGAAAGGTAGAATCTTGGAGTTGTTTTTACAGTTTTTTTTTTGGTATACCCATATAGATATCTCACTGAAATATTGCAAAAATAAGATCAAGAAAGCATTTTTCAGTGGGAAACAAGAAAAGGGCTGGAGTTGATTTTTCAAGATTTTGGTGAAATTGGGTGTGGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGAGAAGACAAAGGTCGCCGACACTGGAAGCGTTCTTGGCGCCGGTGGATCTGACAGATGTTGGGTTGTTGCAAACTTTAACGGCGTTATCTTCTGAGCTGATTTCTGCATATTCAGGTAAAAGGCTGCCGTTTTATCAGCGGAAGAATTGTAAGTCTTTGTTAAGGAAAATTCAAGTATTTTCTGTTCTCTTGGAGTGTCTTCTTGAGAATAAAAAGAACAGAAGTAGTGGTTCTTCAGATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAGTTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGATTATTGCTCTTATTCAAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCAGGTCATTTCCATGATTTGAACCAAGAAATCTCGACCCTTTTGGATGTTTTCCCCTTAAAGGATTTAAAAAATTTATCTGAAGATGTTAGGGAACAGGTTGAGTTGTTGAAGAAACAAGCAAGAAAATC</gDNA_template>
            <first_frame> F  Y  Q  K  G  R  I  L  E  L  F  L  Q  F  F  F  W  Y  T  H  I  D  I  S  L  K  Y  C  K  N  K  I  K  K  A  F  F  S  G  K  Q  E  K  G  W  S  *  F  F  K  I  L  V  K  L  G  V  G  N  *  W  H  L  L  Q  F  S  H  R  *  E  D  K  G  R  R  H  W  K  R  S  W  R  R  W  I  *  Q  M  L  G  C  C  K  L  *  R  R  Y  L  L  S  *  F  L  H  I  Q  V  K  G  C  R  F  I  S  G  R  I  V  S  L  C  *  G  K  F  K  Y  F  L  F  S  W  S  V  F  L  R  I  K  R  T  E  V  V  V  L  Q  I  C  R  L  Q  L  F  C  A  S  R  S  C  I  Y  C  F  T  G  R  K  S  C  L  I  I  A  L  I  Q  V  S  C  G  C  C  Y  K  T  I  R  F  Q  V  I  S  M  I  *  T  K  K  S  R  P  F  W  M  F  S  P  *  R  I  *  K  I  Y  L  K  M  L  G  N  R  L  S  C  *  R  N  K  Q  E  N  </first_frame>
            <second_frame>  F  I  R  K  V  E  S  W  S  C  F  Y  S  F  F  F  G  I  P  I  *  I  S  H  *  N  I  A  K  I  R  S  R  K  H  F  S  V  G  N  K  K  R  A  G  V  D  F  S  R  F  W  *  N  W  V  W  E  I  D  G  I  C  C  N  F  L  I  V  E  K  T  K  V  A  D  T  G  S  V  L  G  A  G  G  S  D  R  C  W  V  V  A  N  F  N  G  V  I  F  *  A  D  F  C  I  F  R  *  K  A  A  V  L  S  A  E  E  L  *  V  F  V  K  E  N  S  S  I  F  C  S  L  G  V  S  S  *  E  *  K  E  Q  K  *  W  F  F  R  F  A  V  Y  S  F  F  V  L  Q  G  V  V  F  I  A  L  P  V  E  N  L  A  *  L  L  L  L  F  K  *  V  V  A  V  A  T  K  P  F  D  F  R  S  F  P  *  F  E  P  R  N  L  D  P  F  G  C  F  P  L  K  G  F  K  K  F  I  *  R  C  *  G  T  G  *  V  V  E  E  T  S  K  K  I </second_frame>
            <third_frame>   L  S  E  R  *  N  L  G  V  V  F  T  V  F  F  L  V  Y  P  Y  R  Y  L  T  E  I  L  Q  K  *  D  Q  E  S  I  F  Q  W  E  T  R  K  G  L  E  L  I  F  Q  D  F  G  E  I  G  C  G  K  L  M  A  S  A  A  I  F  S  S  L  R  R  Q  R  S  P  T  L  E  A  F  L  A  P  V  D  L  T  D  V  G  L  L  Q  T  L  T  A  L  S  S  E  L  I  S  A  Y  S  G  K  R  L  P  F  Y  Q  R  K  N  C  K  S  L  L  R  K  I  Q  V  F  S  V  L  L  E  C  L  L  E  N  K  K  N  R  S  S  G  S  S  D  L  P  F  T  A  F  L  C  F  K  E  L  Y  L  L  L  Y  R  S  K  I  L  L  D  Y  C  S  Y  S  S  K  L  W  L  L  L  Q  N  H  S  I  S  G  H  F  H  D  L  N  Q  E  I  S  T  L  L  D  V  F  P  L  K  D  L  K  N  L  S  E  D  V  R  E  Q  V  E  L  L  K  K  Q  A  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5845" stop="6453"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQESIFQWETRKGLELIFQDFGEIGCGKLMASAAIFSSLRRQRSPTLEAFLAPVDLTDVGLLQTLTALSSELISAYSGKRLPFYQRKNCKSLLRKIQVFSVLLECLLENKKNRSSGSSDLPFTAFLCFKELYLLLYRSKILLDYCSYSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPLKDLKNLSEDVREQVELLKKQARK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6493" PGL_stop="8729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6493" e_stop="8262"/>
            <exon e_start="8716" e_stop="8729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.740" e_score="0.993"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="6493" e_stop="8262" e_length="1770"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.740">
            <gDNA_intron_boundary i_start="8263" i_stop="8715" i_length="453"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="8716" e_stop="8729" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6493" stop="6867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6682" stop="7286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7079" stop="7592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7080" stop="7463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7188" stop="7914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7226" stop="7667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7281" stop="7956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7306" stop="7909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7306" stop="7836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7729" stop="8201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595449" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7848" stop="8262"/>
              <exon start="8716" stop="8729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7920" stop="8254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTTGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGTGTTTCAAA : GAAAACACCCCAAA</gDNA_template>
            <first_frame> L  K  L  F  S  F  L  N  E  F  E  N  G  G  V  P  D  Y  A  Q  L  Y  S  F  F  V  E  K  L  G  I  C  N  P  R  S  C  R  V  E  I  E  F  L  E  E  Q  I  V  N  H  E  G  D  I  E  P  T  S  S  V  L  N  G  F  V  A  L  M  R  Y  C  R  F  L  L  F  G  F  E  E  D  D  M  G  L  R  L  G  K  H  K  K  P  K  R  G  L  I  S  Q  E  I  A  E  T  F  I  S  V  P  K  D  F  C  C  P  I  S  L  D  L  M  R  D  P  V  I  V  A  T  G  Q  T  Y  D  R  A  S  I  S  R  W  M  E  E  G  H  C  T  C  P  K  T  G  Q  L  L  D  H  T  R  L  V  P  N  R  A  L  R  N  L  I  M  H  W  C  A  A  R  K  I  P  Y  D  P  L  E  S  G  D  P  C  V  E  C  F  P  S  A  S  P  S  R  A  A  L  E  A  N  K  A  T  A  A  L  L  I  K  Q  L  E  S  G  T  Q  I  A  K  T  I  A  A  Q  E  I  R  L  L  A  K  T  G  K  E  N  R  A  Y  I  A  E  A  G  A  I  P  H  L  K  N  L  L  S  S  P  D  A  V  A  Q  E  N  S  V  T  A  M  L  N  L  S  I  F  D  K  N  K  G  R  I  I  D  E  V  G  C  L  A  L  I  V  G  V  L  R  F  G  H  T  T  E  A  R  E  N  A  A  A  T  L  F  S  L  S  A  V  H  D  Y  K  R  Q  I  A  K  E  D  G  A  V  E  A  L  A  G  L  L  R  E  G  S  P  R  G  K  K  D  A  V  T  A  L  F  N  L  S  T  H  T  D  N  C  A  R  M  I  E  S  G  A  V  T  A  L  V  G  A  L  G  S  E  G  V  A  E  E  A  A  G  A  L  A  L  I  V  R  Q  Q  V  G  A  T  A  V  G  N  E  E  M  A  V  A  G  L  I  A  M  M  R  C  G  T  P  R  G  K  E  N  A  V  A  A  L  L  E  L  C  R  G  G  G  A  A  A  T  E  R  V  L  K  A  P  S  L  A  S  L  L  Q  T  L  L  F  T  G  T  K  R  A  R  R  K  A  A  S  L  A  R  V  F  Q  R  C  E  H  A  A  V  H  Y  S  G  F  G  V  G  Y  A  F  A  G  N  S  A  A  A  R  D  S  T  F  P  G  D  V  S  V  S  M  S  I  S  V  P  V  L  *  G  Y  L  P  P  F  I  F  C  S  *  F  Y  L  *  Y  S  K  I  L  S  L  K  Y  K  R  D  K  E  R  E  K  S  *  E  Y  H  K  I  H  V  F  L  A  F  C  R  I  Q  C  F  K  :  E  N  T  P   </first_frame>
            <second_frame>  *  N  C  F  L  S  *  M  S  L  R  M  V  V  F  L  T  M  L  S  C  T  L  F  L  W  K  N  W  G  F  V  I  L  G  V  A  E  L  R  L  S  F  W  R  S  R  L  *  T  M  K  E  I  L  S  P  H  P  Q  F  S  T  G  L  W  R  *  C  D  T  A  G  F  C  Y  L  A  L  K  R  M  I  W  G  *  D  W  V  S  I  R  S  R  R  E  G  *  L  V  K  R  L  Q  R  H  S  F  L  Y  Q  R  T  S  V  V  R  Y  R  W  I  *  *  G  I  Q  L  L  W  Q  Q  G  R  H  M  I  E  L  L  Y  R  G  G  W  R  R  V  T  V  L  A  Q  R  Q  G  S  C  L  I  I  P  G  L  C  Q  T  G  L  L  G  I  *  L  C  I  G  V  L  L  A  K  F  P  M  T  L  W  R  V  G  I  H  V  L  N  V  F  H  Q  L  H  L  A  G  L  H  *  K  L  I  K  P  Q  Q  L  F  *  L  S  S  *  R  V  G  R  R  L  Q  K  L  L  L  L  R  R  *  D  F  *  L  K  L  V  R  R  I  V  H  T  *  L  R  L  V  Q  S  H  I  *  R  I  C  F  H  L  Q  M  L  W  H  K  K  I  P  S  L  Q  C  L  T  Y  R  F  L  I  R  I  K  A  E  L  L  M  K  *  G  V  W  L  *  *  L  E  F  *  D  L  G  T  P  Q  R  H  G  K  M  L  Q  Q  H  Y  S  V  C  Q  L  F  M  T  I  R  G  K  *  Q  K  K  M  G  Q  S  R  P  *  R  V  C  C  E  K  V  L  P  E  G  R  K  M  Q  *  L  L  Y  L  I  Y  P  P  T  Q  I  I  V  R  G  *  *  S  L  E  L  L  L  L  *  L  E  L  W  E  V  K  V  L  L  K  K  L  L  V  H  W  R  *  L  L  G  S  K  L  V  L  Q  L  L  A  M  R  K  W  Q  *  Q  G  S  L  Q  *  C  D  V  G  H  Q  E  G  R  R  M  L  L  L  H  Y  L  N  Y  A  A  V  V  E  Q  L  L  L  R  G  S  *  R  R  R  H  *  Q  V  Y  F  R  R  C  S  L  Q  E  Q  S  A  Q  G  G  K  Q  H  R  L  L  E  Y  S  N  G  V  S  M  Q  Q  F  I  I  V  G  L  V  *  D  M  H  L  L  E  T  Q  L  L  L  G  I  Q  L  F  L  V  M  S  Q  C  P  C  P  F  Q  F  Q  Y  Y  R  G  T  Y  H  H  S  S  F  V  L  S  F  T  C  N  I  Q  K  F  F  H  *  N  I  N  A  T  K  K  E  R  N  H  R  N  T  T  K  F  M  C  S  *  H  F  A  E  Y  S  V  S  K :   K  T  P  Q  </second_frame>
            <third_frame>   E  I  V  F  F  L  E  *  V  *  E  W  W  C  S  *  L  C  S  V  V  L  F  F  C  G  K  I  G  D  L  *  S  *  E  L  Q  S  *  D  *  V  F  G  G  A  D  C  E  P  *  R  R  Y  *  A  H  I  L  S  S  Q  R  V  C  G  V  D  A  I  L  Q  V  F  A  I  W  L  *  R  G  *  Y  G  V  E  I  G  *  A  *  E  A  E  E  R  A  D  *  S  R  D  C  R  D  I  H  F  C  T  K  G  L  L  L  S  D  I  V  G  F  D  E  G  S  S  Y  C  G  N  R  A  D  I  *  S  S  F  Y  I  E  V  D  G  G  G  S  L  Y  L  P  K  D  R  A  V  A  *  S  Y  P  A  C  A  K  Q  G  S  *  E  F  D  Y  A  L  V  C  C  S  Q  N  S  L  *  P  S  G  E  W  G  S  M  C  *  M  F  S  I  S  F  T  *  Q  G  C  T  R  S  *  *  S  H  S  S  S  S  D  *  A  A  R  E  W  D  A  D  C  K  N  Y  C  C  S  G  D  K  T  F  S  *  N  W  *  G  E  S  C  I  H  S  *  G  W  C  N  P  T  F  E  E  F  A  F  I  S  R  C  C  G  T  R  K  F  R  H  C  N  A  *  L  I  D  F  *  *  E  *  R  P  N  Y  *  *  S  R  V  S  G  F  D  S  W  S  F  E  I  W  A  H  H  R  G  T  G  K  C  C  S  N  I  I  Q  S  V  S  C  S  *  L  *  E  A  N  S  K  R  R  W  G  S  R  G  L  S  G  S  V  A  R  R  F  S  Q  R  E  E  R  C  S  N  C  S  I  *  F  I  H  P  H  R  *  L  C  E  D  D  R  V  W  S  C  Y  C  S  S  W  S  F  G  K  *  R  C  C  *  R  S  C  W  C  I  G  A  D  C  *  A  A  S  W  C  Y  S  C  W  Q  *  G  N  G  S  S  R  A  H  C  N  D  A  M  W  D  T  K  R  E  G  E  C  C  C  C  I  T  *  I  M  P  R  W  W  S  S  C  Y  *  E  G  L  E  G  A  V  I  S  K  F  T  S  D  V  A  L  Y  R  N  K  A  R  K  E  E  S  S  I  A  C  *  S  I  P  T  V  *  A  C  S  S  S  L  *  W  V  W  C  R  I  C  I  C  W  K  L  S  C  C  *  G  F  N  F  S  W  *  C  L  S  V  H  V  H  F  S  S  S  I  I  G  V  L  T  T  I  H  L  L  F  L  V  L  L  V  I  F  K  N  S  F  I  E  I  *  T  R  Q  R  K  R  E  I  I  G  I  P  Q  N  S  C  V  L  S  I  L  Q  N  T  V  F  Q   : R  K  H  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6493" stop="8106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1611</number_coding_nucleotides>
                  <number_encoded_amino_acids>537</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLFSFLNEFENGGVPDYAQLYSFFVEKLGICNPRSCRVEIEFLEEQIVNHEGDIEPTSSVLNGFVALMRYCRFLLFGFEEDDMGLRLGKHKKPKRGLISQEIAETFISVPKDFCCPISLDLMRDPVIVATGQTYDRASISRWMEEGHCTCPKTGQLLDHTRLVPNRALRNLIMHWCAARKIPYDPLESGDPCVECFPSASPSRAALEANKATAALLIKQLESGTQIAKTIAAQEIRLLAKTGKENRAYIAEAGAIPHLKNLLSSPDAVAQENSVTAMLNLSIFDKNKGRIIDEVGCLALIVGVLRFGHTTEARENAAATLFSLSAVHDYKRQIAKEDGAVEALAGLLREGSPRGKKDAVTALFNLSTHTDNCARMIESGAVTALVGALGSEGVAEEAAGALALIVRQQVGATAVGNEEMAVAGLIAMMRCGTPRGKENAVAALLELCRGGGAAATERVLKAPSLASLLQTLLFTGTKRARRKAASLARVFQRCEHAAVHYSGFGVGYAFAGNSAAARDSTFPGDVSVSMSISVPVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8207" PGL_stop="7528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8207" e_stop="7528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="8207" e_stop="7528" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8207" stop="7528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGATTTCTCTCTTTCTTTGTCGCGTTTATATTTCAATGAAAGAATTTTTGAATATTACAAGTAAAACTAAGAACAAAAGATGAATGGTGGTAAGTACCCCTATAATACTGGAACTGAAATGGACATGGACACTGAGACATCACCAGGAAAAGTTGAATCCCTAGCAGCAGCTGAGTTTCCAGCAAATGCATATCCTACACCAAACCCACTATAATGAACTGCTGCATGCTCACACCGTTGGAATACTCTAGCAAGCGATGCTGCTTTCCTCCTTGCGCGCTTTGTTCCTGTAAAGAGCAACGTCTGAAGTAAACTTGCTAATGACGGCGCCTTCAAGACCCTCTCAGTAGCAGCTGCTCCACCACCGCGGCATAATTCAAGTAATGCAGCAACAGCATTCTCCTTCCCTCTTGGTGTCCCACATCGCATCATTGCAATGAGCCCTGCTACTGCCATTTCCTCATTGCCAACAGCTGTAGCACCAACTTGCTGCCTAACAATCAGCGCCAATGCACCAGCAGCTTCTTCAGCAACACCTTCACTTCCCAAAGCTCCAACTAGAGCAGTAACAGCTCCAGACTCTATCATCCTCGCACAATTATCTGTGTGGGTGGATAAATTAAATAGAGCAGTTACTGCATCTTTCTTCCCTCTGGGAGAACCTTCTCGCAACAGACC</gDNA_template>
            <first_frame> Y  D  F  S  L  S  L  S  R  L  Y  F  N  E  R  I  F  E  Y  Y  K  *  N  *  E  Q  K  M  N  G  G  K  Y  P  Y  N  T  G  T  E  M  D  M  D  T  E  T  S  P  G  K  V  E  S  L  A  A  A  E  F  P  A  N  A  Y  P  T  P  N  P  L  *  *  T  A  A  C  S  H  R  W  N  T  L  A  S  D  A  A  F  L  L  A  R  F  V  P  V  K  S  N  V  *  S  K  L  A  N  D  G  A  F  K  T  L  S  V  A  A  A  P  P  P  R  H  N  S  S  N  A  A  T  A  F  S  F  P  L  G  V  P  H  R  I  I  A  M  S  P  A  T  A  I  S  S  L  P  T  A  V  A  P  T  C  C  L  T  I  S  A  N  A  P  A  A  S  S  A  T  P  S  L  P  K  A  P  T  R  A  V  T  A  P  D  S  I  I  L  A  Q  L  S  V  W  V  D  K  L  N  R  A  V  T  A  S  F  F  P  L  G  E  P  S  R  N  R   </first_frame>
            <second_frame>  M  I  S  L  F  L  C  R  V  Y  I  S  M  K  E  F  L  N  I  T  S  K  T  K  N  K  R  *  M  V  V  S  T  P  I  I  L  E  L  K  W  T  W  T  L  R  H  H  Q  E  K  L  N  P  *  Q  Q  L  S  F  Q  Q  M  H  I  L  H  Q  T  H  Y  N  E  L  L  H  A  H  T  V  G  I  L  *  Q  A  M  L  L  S  S  L  R  A  L  F  L  *  R  A  T  S  E  V  N  L  L  M  T  A  P  S  R  P  S  Q  *  Q  L  L  H  H  R  G  I  I  Q  V  M  Q  Q  Q  H  S  P  S  L  L  V  S  H  I  A  S  L  Q  *  A  L  L  L  P  F  P  H  C  Q  Q  L  *  H  Q  L  A  A  *  Q  S  A  P  M  H  Q  Q  L  L  Q  Q  H  L  H  F  P  K  L  Q  L  E  Q  *  Q  L  Q  T  L  S  S  S  H  N  Y  L  C  G  W  I  N  *  I  E  Q  L  L  H  L  S  S  L  W  E  N  L  L  A  T  D  </second_frame>
            <third_frame>   *  F  L  S  F  F  V  A  F  I  F  Q  *  K  N  F  *  I  L  Q  V  K  L  R  T  K  D  E  W  W  *  V  P  L  *  Y  W  N  *  N  G  H  G  H  *  D  I  T  R  K  S  *  I  P  S  S  S  *  V  S  S  K  C  I  S  Y  T  K  P  T  I  M  N  C  C  M  L  T  P  L  E  Y  S  S  K  R  C  C  F  P  P  C  A  L  C  S  C  K  E  Q  R  L  K  *  T  C  *  *  R  R  L  Q  D  P  L  S  S  S  C  S  T  T  A  A  *  F  K  *  C  S  N  S  I  L  L  P  S  W  C  P  T  S  H  H  C  N  E  P  C  Y  C  H  F  L  I  A  N  S  C  S  T  N  L  L  P  N  N  Q  R  Q  C  T  S  S  F  F  S  N  T  F  T  S  Q  S  S  N  *  S  S  N  S  S  R  L  Y  H  P  R  T  I  I  C  V  G  G  *  I  K  *  S  S  Y  C  I  F  L  P  S  G  R  T  F  S  Q  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7898" stop="7530"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLANDGAFKTLSVAAAPPPRHNSSNAATAFSFPLGVPHRIIAMSPATAISSLPTAVAPTCCLTISANAPAASSATPSLPKAPTRAVTAPDSIILAQLSVWVDKLNRAVTASFFPLGEPSRNR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20335" PGL_stop="19553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20335" e_stop="20066"/>
            <exon e_start="19975" e_stop="19553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.978"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="20335" e_stop="20066" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20065" i_stop="19976" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="19975" e_stop="19553" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20335" stop="20066"/>
              <exon start="19975" stop="19553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAATTTAGAATTTCATTTTCTTGGTTCAATTTGCTTTCTCTTTTGCTAATCAATGTGTATGTTTTGGGGGTTTTCTCCTTAAGTCTTGATGGAAATGATGACTACATTTCAGCTGTTGGAGATTCAGGGATGCGACGCGACGGGCTAAGAGTGGCCATAGAGGCATTAAATCAATGCAATGAGGTTGGAGAAGAAACCCCAAAAATGGGAAGCCCAAGGGCTGCTGATTGCTTTGATGTTCAAAACAAAGCCTCTGCTCAGCAACAGA : ATCCAAACAGGCTGCTACAACATAAAGTGACTGAGGAAGATAACAAGTTAGGCATAGGAAAATCATTTCCAGGACTGACGAAACGAGCGTTGAACAACGTAGACCTTTATGCAGCAGAGAAAGAAGTATACTTGGGATCAAAATGTCAAGTTGATGACAAGCCAAATCCATGGCAATTCTGGACGATCAGGCTTAAGAGTGGTAACATGGATACTCGTGCTGGTAAATGCCCGAAAAATGGACACAAAGTAGGTCCATTCGATCCTTCTGGCGAATTTGAATGTTTTGGCAAAGGATGTATGAATCAGCCATTGATGTACCACAATTACACAACTTTACAAGGGACAACCCTTAAAGGGGAATTTCATGGAACATGGGATTTGAATGCTGGTTCGAGTGCAAACATGAACACCTCTTTTTATT</gDNA_template>
            <first_frame> L  N  L  E  F  H  F  L  G  S  I  C  F  L  F  C  *  S  M  C  M  F  W  G  F  S  P  *  V  L  M  E  M  M  T  T  F  Q  L  L  E  I  Q  G  C  D  A  T  G  *  E  W  P  *  R  H  *  I  N  A  M  R  L  E  K  K  P  Q  K  W  E  A  Q  G  L  L  I  A  L  M  F  K  T  K  P  L  L  S  N  R  :  I  Q  T  G  C  Y  N  I  K  *  L  R  K  I  T  S  *  A  *  E  N  H  F  Q  D  *  R  N  E  R  *  T  T  *  T  F  M  Q  Q  R  K  K  Y  T  W  D  Q  N  V  K  L  M  T  S  Q  I  H  G  N  S  G  R  S  G  L  R  V  V  T  W  I  L  V  L  V  N  A  R  K  M  D  T  K  *  V  H  S  I  L  L  A  N  L  N  V  L  A  K  D  V  *  I  S  H  *  C  T  T  I  T  Q  L  Y  K  G  Q  P  L  K  G  N  F  M  E  H  G  I  *  M  L  V  R  V  Q  T  *  T  P  L  F  I </first_frame>
            <second_frame>  S  I  *  N  F  I  F  L  V  Q  F  A  F  S  F  A  N  Q  C  V  C  F  G  G  F  L  L  K  S  *  W  K  *  *  L  H  F  S  C  W  R  F  R  D  A  T  R  R  A  K  S  G  H  R  G  I  K  S  M  Q  *  G  W  R  R  N  P  K  N  G  K  P  K  G  C  *  L  L  *  C  S  K  Q  S  L  C  S  A  T  E :   S  K  Q  A  A  T  T  *  S  D  *  G  R  *  Q  V  R  H  R  K  I  I  S  R  T  D  E  T  S  V  E  Q  R  R  P  L  C  S  R  E  R  S  I  L  G  I  K  M  S  S  *  *  Q  A  K  S  M  A  I  L  D  D  Q  A  *  E  W  *  H  G  Y  S  C  W  *  M  P  E  K  W  T  Q  S  R  S  I  R  S  F  W  R  I  *  M  F  W  Q  R  M  Y  E  S  A  I  D  V  P  Q  L  H  N  F  T  R  D  N  P  *  R  G  I  S  W  N  M  G  F  E  C  W  F  E  C  K  H  E  H  L  F  L   </second_frame>
            <third_frame>   Q  F  R  I  S  F  S  W  F  N  L  L  S  L  L  L  I  N  V  Y  V  L  G  V  F  S  L  S  L  D  G  N  D  D  Y  I  S  A  V  G  D  S  G  M  R  R  D  G  L  R  V  A  I  E  A  L  N  Q  C  N  E  V  G  E  E  T  P  K  M  G  S  P  R  A  A  D  C  F  D  V  Q  N  K  A  S  A  Q  Q  Q   : N  P  N  R  L  L  Q  H  K  V  T  E  E  D  N  K  L  G  I  G  K  S  F  P  G  L  T  K  R  A  L  N  N  V  D  L  Y  A  A  E  K  E  V  Y  L  G  S  K  C  Q  V  D  D  K  P  N  P  W  Q  F  W  T  I  R  L  K  S  G  N  M  D  T  R  A  G  K  C  P  K  N  G  H  K  V  G  P  F  D  P  S  G  E  F  E  C  F  G  K  G  C  M  N  Q  P  L  M  Y  H  N  Y  T  T  L  Q  G  T  T  L  K  G  E  F  H  G  T  W  D  L  N  A  G  S  S  A  N  M  N  T  S  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20333" stop="20066"/>
                    <exon start="19975" stop="19554"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFRISFSWFNLLSLLLINVYVLGVFSLSLDGNDDYISAVGDSGMRRDGLRVAIEALNQCNEVGEETPKMGSPRAADCFDVQNKASAQQQNPNRLLQHKVTEEDNKLGIGKSFPGLTKRALNNVDLYAAEKEVYLGSKCQVDDKPNPWQFWTIRLKSGNMDTRAGKCPKNGHKVGPFDPSGEFECFGKGCMNQPLMYHNYTTLQGTTLKGEFHGTWDLNAGSSANMNTSFY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30326" PGL_stop="29923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30326" e_stop="29923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="30326" e_stop="29923" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30326" stop="29923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCGCATCGCTACCAAACTTTTAGAGGTTGATCCTCGCGACAGTGCTGGTTATGTTCAACTATCAAATGCCCTTGCATCTATGGGGAGATGGGATGATGTGAGGGAAGTGCGTAGAAAGATGAGGAGCGAGGGGATAACTAAAGAGCCTGGTTGTAGTATGATTGAAGTTGATGGAGTTGTTCATGAGTTCTTGGCTGGTGAAGGATAATACTGTAACAAGGACAAAATACTTCTTGTAGCAACTGACAGATGATCCAGTCTGGTGAAGAATGGGGTTTGTCTTTCTTTATGAAAACCAAACTGTTGCTTATATTGATAGAAATGGCTTTTTTTGTAACAGAAGCAAACAGTTTGTGGTAAACTATAACAAGCAGCTAAGATCCTAGAAGCAGCAATAAGCAAT</gDNA_template>
            <first_frame> S  A  S  L  P  N  F  *  R  L  I  L  A  T  V  L  V  M  F  N  Y  Q  M  P  L  H  L  W  G  D  G  M  M  *  G  K  C  V  E  R  *  G  A  R  G  *  L  K  S  L  V  V  V  *  L  K  L  M  E  L  F  M  S  S  W  L  V  K  D  N  T  V  T  R  T  K  Y  F  L  *  Q  L  T  D  D  P  V  W  *  R  M  G  F  V  F  L  Y  E  N  Q  T  V  A  Y  I  D  R  N  G  F  F  C  N  R  S  K  Q  F  V  V  N  Y  N  K  Q  L  R  S  *  K  Q  Q  *  A   </first_frame>
            <second_frame>  A  H  R  Y  Q  T  F  R  G  *  S  S  R  Q  C  W  L  C  S  T  I  K  C  P  C  I  Y  G  E  M  G  *  C  E  G  S  A  *  K  D  E  E  R  G  D  N  *  R  A  W  L  *  Y  D  *  S  *  W  S  C  S  *  V  L  G  W  *  R  I  I  L  *  Q  G  Q  N  T  S  C  S  N  *  Q  M  I  Q  S  G  E  E  W  G  L  S  F  F  M  K  T  K  L  L  L  I  L  I  E  M  A  F  F  V  T  E  A  N  S  L  W  *  T  I  T  S  S  *  D  P  R  S  S  N  K  Q  </second_frame>
            <third_frame>   R  I  A  T  K  L  L  E  V  D  P  R  D  S  A  G  Y  V  Q  L  S  N  A  L  A  S  M  G  R  W  D  D  V  R  E  V  R  R  K  M  R  S  E  G  I  T  K  E  P  G  C  S  M  I  E  V  D  G  V  V  H  E  F  L  A  G  E  G  *  Y  C  N  K  D  K  I  L  L  V  A  T  D  R  *  S  S  L  V  K  N  G  V  C  L  S  L  *  K  P  N  C  C  L  Y  *  *  K  W  L  F  L  *  Q  K  Q  T  V  C  G  K  L  *  Q  A  A  K  I  L  E  A  A  I  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30324" stop="30118"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIATKLLEVDPRDSAGYVQLSNALASMGRWDDVREVRRKMRSEGITKEPGCSMIEVDGVVHEFLAGEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33374" PGL_stop="33040"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33374" e_stop="33040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="33374" e_stop="33040" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33374" stop="33040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33374" stop="33040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGGTTGATGCACCCGAAGTACAGTCCGAAAGAAAAGATATTGGTAGCAAAAAGAATGAAAGCAAACCAGTTGACAGTGGAAAATATTGGTGGAACATGAAGAGTGTAAATAGCCTGGCAGAACAGATGGGACATCTTACTCCAGCGGAGAAAACTTAGTTTGGTAGGTTATATTGCAAATGCTTTATTCATGTTGTTAGCCTTCTGGCTTGTTGTATATCTAGTGTACTAGTTTTTTTTTTCTTATCAGGGATTAGATATACGTGTTGATGTATAAATTGATTTTGTTAATGCTGTGCATTGCATGATATGAGGGAAATCGAGCTTCTGAAAA</gDNA_template>
            <first_frame> F  G  *  C  T  R  S  T  V  R  K  K  R  Y  W  *  Q  K  E  *  K  Q  T  S  *  Q  W  K  I  L  V  E  H  E  E  C  K  *  P  G  R  T  D  G  T  S  Y  S  S  G  E  N  L  V  W  *  V  I  L  Q  M  L  Y  S  C  C  *  P  S  G  L  L  Y  I  *  C  T  S  F  F  F  L  I  R  D  *  I  Y  V  L  M  Y  K  L  I  L  L  M  L  C  I  A  *  Y  E  G  N  R  A  S  E   </first_frame>
            <second_frame>  S  V  D  A  P  E  V  Q  S  E  R  K  D  I  G  S  K  K  N  E  S  K  P  V  D  S  G  K  Y  W  W  N  M  K  S  V  N  S  L  A  E  Q  M  G  H  L  T  P  A  E  K  T  *  F  G  R  L  Y  C  K  C  F  I  H  V  V  S  L  L  A  C  C  I  S  S  V  L  V  F  F  F  L  S  G  I  R  Y  T  C  *  C  I  N  *  F  C  *  C  C  A  L  H  D  M  R  E  I  E  L  L  K  </second_frame>
            <third_frame>   R  L  M  H  P  K  Y  S  P  K  E  K  I  L  V  A  K  R  M  K  A  N  Q  L  T  V  E  N  I  G  G  T  *  R  V  *  I  A  W  Q  N  R  W  D  I  L  L  Q  R  R  K  L  S  L  V  G  Y  I  A  N  A  L  F  M  L  L  A  F  W  L  V  V  Y  L  V  Y  *  F  F  F  S  Y  Q  G  L  D  I  R  V  D  V  *  I  D  F  V  N  A  V  H  C  M  I  *  G  K  S  S  F  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0096H01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41982" PGL_stop="46609"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41988" e_stop="42313"/>
            <exon e_start="45900" e_stop="46609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41988" e_stop="42313" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42314" i_stop="45899" i_length="3586"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45900" e_stop="46609" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41988" stop="42313"/>
              <exon start="45900" stop="46276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41989" stop="42313"/>
              <exon start="45900" stop="46109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42115" stop="42313"/>
              <exon start="45900" stop="46234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42120" stop="42313"/>
              <exon start="45900" stop="46272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46032" stop="46609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46093" stop="46293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAG : GGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATCCTCAACCCCTCCTAGTCCAGGTCGCCAAACCCCACCGGATTCAGGATGGCTCTCTGGTGTTCAAACTCCACAGGATGGGCCTTCATCTCCCACTTTCAGCCTTGTCTCGTCAAATCCATTTGGATTTAAGGAGCCATTATCAAATGGAGGGTCTCGAATGTGGACACCTGGGCAAAGTGGGACGTGTTCACCTGCAGTTGGACCTTGTATGGACCAAACAGCTGATGTACCAATGTCGGATGCTATCTCAGCAGAGTTTGCATTTGGCAGCAATATGAAAGGTGTAGTCAAGCCATGGGAAGGAGAAAGAATTCATGAAGAGTG</gDNA_template>
            <first_frame> V  F  S  F  Q  F  P  G  F  A  S  P  V  Q  K  *  T  G  R  R  I  L  I  R  F  K  S  S  I  A  E  Q  S  T  A  L  *  *  L  P  A  R  G  Y  R  H  G  R  R  E  R  I  I  S  G  E  S  G  G  G  G  R  S  P  L  R  S  S  P  D  *  G  C  M  V  T  I  S  Y  R  S  T  V  I  I  T  R  Y  *  K  L  C  V  K  R  L  V  G  L  L  K  K  M  E  L  L  T  E  R :   D  A  S  Q  L  H  A  L  I  S  V  V  L  F  L  *  A  V  H  L  T  N  S  A  L  V  L  H  I  I  R  V  R  F  H  H  L  S  L  A  R  S  H  P  I  M  L  P  M  S  K  I  I  L  I  R  T  L  L  F  L  G  L  R  T  C  H  L  A  H  H  H  P  C  L  I  F  P  I  I  C  A  F  L  E  V  L  *  V  L  L  *  L  H  L  *  A  L  P  L  P  V  L  P  G  *  M  I  I  G  K  I  P  R  P  T  L  H  G  Y  N  S  I  I  P  S  C  H  P  Q  P  L  L  V  Q  V  A  K  P  H  R  I  Q  D  G  S  L  V  F  K  L  H  R  M  G  L  H  L  P  L  S  A  L  S  R  Q  I  H  L  D  L  R  S  H  Y  Q  M  E  G  L  E  C  G  H  L  G  K  V  G  R  V  H  L  Q  L  D  L  V  W  T  K  Q  L  M  Y  Q  C  R  M  L  S  Q  Q  S  L  H  L  A  A  I  *  K  V  *  S  S  H  G  K  E  K  E  F  M  K  S  </first_frame>
            <second_frame>  F  F  P  F  N  F  Q  V  L  Q  A  R  S  R  S  K  P  V  E  E  F  *  S  G  L  S  L  P  L  R  S  N  R  R  R  C  N  D  F  R  H  E  A  T  D  M  E  G  E  R  E  *  *  A  E  R  A  A  A  E  G  D  R  R  *  D  L  R  R  I  K  D  V  W  *  L  *  A  T  E  A  L  *  *  *  R  G  I  E  S  S  V  *  R  G  W  L  D  C  *  R  R  W  N  Y  L  Q  K   : G  M  Q  A  S  Y  T  H  *  Y  R  W  F  C  F  C  K  Q  F  I  L  P  T  Q  P  W  C  F  I  *  S  E  S  G  F  I  I  Y  P  *  P  G  L  I  P  L  C  C  Q  C  P  K  *  F  *  S  E  L  S  Y  S  L  A  *  E  P  V  I  W  L  I  T  I  L  V  *  F  S  P  S  S  V  H  S  W  R  F  Y  K  C  S  C  D  S  T  F  E  L  S  H  C  Q  Y  S  Q  D  E  *  *  L  G  K  S  H  G  Q  L  Y  M  D  T  T  A  L  S  L  L  A  I  L  N  P  S  *  S  R  S  P  N  P  T  G  F  R  M  A  L  W  C  S  N  S  T  G  W  A  F  I  S  H  F  Q  P  C  L  V  K  S  I  W  I  *  G  A  I  I  K  W  R  V  S  N  V  D  T  W  A  K  W  D  V  F  T  C  S  W  T  L  Y  G  P  N  S  *  C  T  N  V  G  C  Y  L  S  R  V  C  I  W  Q  Q  Y  E  R  C  S  Q  A  M  G  R  R  K  N  S  *  R  V </second_frame>
            <third_frame>   F  F  L  S  I  S  R  F  C  K  P  G  P  E  V  N  R  S  K  N  F  N  P  V  *  V  F  H  C  G  A  I  D  G  V  V  M  T  S  G  T  R  L  P  T  W  K  E  R  E  N  N  K  R  R  E  R  R  R  R  A  I  A  A  K  I  F  A  G  L  R  M  Y  G  N  Y  K  L  P  K  H  C  D  N  N  E  V  L  K  A  L  C  K  E  A  G  W  I  V  E  E  D  G  T  T  Y  R  K  :  G  C  K  P  V  T  R  I  D  I  G  G  S  V  S  V  S  S  S  S  Y  Q  L  S  P  G  A  S  Y  N  P  S  P  V  S  S  S  I  P  S  P  V  S  S  H  Y  V  A  N  V  Q  N  N  S  D  P  N  S  L  I  P  W  L  K  N  L  S  S  G  S  S  P  S  L  S  N  F  P  H  H  L  C  I  P  G  G  S  I  S  A  P  V  T  P  P  L  S  S  P  T  A  S  T  P  R  M  N  D  N  W  E  N  P  T  A  N  S  T  W  I  Q  Q  H  Y  P  F  L  P  S  S  T  P  P  S  P  G  R  Q  T  P  P  D  S  G  W  L  S  G  V  Q  T  P  Q  D  G  P  S  S  P  T  F  S  L  V  S  S  N  P  F  G  F  K  E  P  L  S  N  G  G  S  R  M  W  T  P  G  Q  S  G  T  C  S  P  A  V  G  P  C  M  D  Q  T  A  D  V  P  M  S  D  A  I  S  A  E  F  A  F  G  S  N  M  K  G  V  V  K  P  W  E  G  E  R  I  H  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42065" stop="42313"/>
                    <exon start="45900" stop="46607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFHCGAIDGVVMTSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYRKGCKPVTRIDIGGSVSVSSSSYQLSPGASYNPSPVSSSIPSPVSSHYVANVQNNSDPNSLIPWLKNLSSGSSPSLSNFPHHLCIPGGSISAPVTPPLSSPTASTPRMNDNWENPTANSTWIQQHYPFLPSSTPPSPGRQTPPDSGWLSGVQTPQDGPSSPTFSLVSSNPFGFKEPLSNGGSRMWTPGQSGTCSPAVGPCMDQTADVPMSDAISAEFAFGSNMKGVVKPWEGERIHEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41982" e_stop="42313"/>
            <exon e_start="45897" e_stop="46609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41982" e_stop="42313" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="42314" i_stop="45896" i_length="3583"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45897" e_stop="46609" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41982" stop="42313"/>
              <exon start="45897" stop="46215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46032" stop="46609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46093" stop="46293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTAGTTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAG : CAGGGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATCCTCAACCCCTCCTAGTCCAGGTCGCCAAACCCCACCGGATTCAGGATGGCTCTCTGGTGTTCAAACTCCACAGGATGGGCCTTCATCTCCCACTTTCAGCCTTGTCTCGTCAAATCCATTTGGATTTAAGGAGCCATTATCAAATGGAGGGTCTCGAATGTGGACACCTGGGCAAAGTGGGACGTGTTCACCTGCAGTTGGACCTTGTATGGACCAAACAGCTGATGTACCAATGTCGGATGCTATCTCAGCAGAGTTTGCATTTGGCAGCAATATGAAAGGTGTAGTCAAGCCATGGGAAGGAGAAAGAATTCATGAAGAGTG</gDNA_template>
            <first_frame> L  L  V  F  S  F  Q  F  P  G  F  A  S  P  V  Q  K  *  T  G  R  R  I  L  I  R  F  K  S  S  I  A  E  Q  S  T  A  L  *  *  L  P  A  R  G  Y  R  H  G  R  R  E  R  I  I  S  G  E  S  G  G  G  G  R  S  P  L  R  S  S  P  D  *  G  C  M  V  T  I  S  Y  R  S  T  V  I  I  T  R  Y  *  K  L  C  V  K  R  L  V  G  L  L  K  K  M  E  L  L  T  E  S :   R  D  A  S  Q  L  H  A  L  I  S  V  V  L  F  L  *  A  V  H  L  T  N  S  A  L  V  L  H  I  I  R  V  R  F  H  H  L  S  L  A  R  S  H  P  I  M  L  P  M  S  K  I  I  L  I  R  T  L  L  F  L  G  L  R  T  C  H  L  A  H  H  H  P  C  L  I  F  P  I  I  C  A  F  L  E  V  L  *  V  L  L  *  L  H  L  *  A  L  P  L  P  V  L  P  G  *  M  I  I  G  K  I  P  R  P  T  L  H  G  Y  N  S  I  I  P  S  C  H  P  Q  P  L  L  V  Q  V  A  K  P  H  R  I  Q  D  G  S  L  V  F  K  L  H  R  M  G  L  H  L  P  L  S  A  L  S  R  Q  I  H  L  D  L  R  S  H  Y  Q  M  E  G  L  E  C  G  H  L  G  K  V  G  R  V  H  L  Q  L  D  L  V  W  T  K  Q  L  M  Y  Q  C  R  M  L  S  Q  Q  S  L  H  L  A  A  I  *  K  V  *  S  S  H  G  K  E  K  E  F  M  K  S  </first_frame>
            <second_frame>  Y  *  F  F  P  F  N  F  Q  V  L  Q  A  R  S  R  S  K  P  V  E  E  F  *  S  G  L  S  L  P  L  R  S  N  R  R  R  C  N  D  F  R  H  E  A  T  D  M  E  G  E  R  E  *  *  A  E  R  A  A  A  E  G  D  R  R  *  D  L  R  R  I  K  D  V  W  *  L  *  A  T  E  A  L  *  *  *  R  G  I  E  S  S  V  *  R  G  W  L  D  C  *  R  R  W  N  Y  L  Q  K   : A  G  M  Q  A  S  Y  T  H  *  Y  R  W  F  C  F  C  K  Q  F  I  L  P  T  Q  P  W  C  F  I  *  S  E  S  G  F  I  I  Y  P  *  P  G  L  I  P  L  C  C  Q  C  P  K  *  F  *  S  E  L  S  Y  S  L  A  *  E  P  V  I  W  L  I  T  I  L  V  *  F  S  P  S  S  V  H  S  W  R  F  Y  K  C  S  C  D  S  T  F  E  L  S  H  C  Q  Y  S  Q  D  E  *  *  L  G  K  S  H  G  Q  L  Y  M  D  T  T  A  L  S  L  L  A  I  L  N  P  S  *  S  R  S  P  N  P  T  G  F  R  M  A  L  W  C  S  N  S  T  G  W  A  F  I  S  H  F  Q  P  C  L  V  K  S  I  W  I  *  G  A  I  I  K  W  R  V  S  N  V  D  T  W  A  K  W  D  V  F  T  C  S  W  T  L  Y  G  P  N  S  *  C  T  N  V  G  C  Y  L  S  R  V  C  I  W  Q  Q  Y  E  R  C  S  Q  A  M  G  R  R  K  N  S  *  R  V </second_frame>
            <third_frame>   I  S  F  F  L  S  I  S  R  F  C  K  P  G  P  E  V  N  R  S  K  N  F  N  P  V  *  V  F  H  C  G  A  I  D  G  V  V  M  T  S  G  T  R  L  P  T  W  K  E  R  E  N  N  K  R  R  E  R  R  R  R  A  I  A  A  K  I  F  A  G  L  R  M  Y  G  N  Y  K  L  P  K  H  C  D  N  N  E  V  L  K  A  L  C  K  E  A  G  W  I  V  E  E  D  G  T  T  Y  R  K  :  Q  G  C  K  P  V  T  R  I  D  I  G  G  S  V  S  V  S  S  S  S  Y  Q  L  S  P  G  A  S  Y  N  P  S  P  V  S  S  S  I  P  S  P  V  S  S  H  Y  V  A  N  V  Q  N  N  S  D  P  N  S  L  I  P  W  L  K  N  L  S  S  G  S  S  P  S  L  S  N  F  P  H  H  L  C  I  P  G  G  S  I  S  A  P  V  T  P  P  L  S  S  P  T  A  S  T  P  R  M  N  D  N  W  E  N  P  T  A  N  S  T  W  I  Q  Q  H  Y  P  F  L  P  S  S  T  P  P  S  P  G  R  Q  T  P  P  D  S  G  W  L  S  G  V  Q  T  P  Q  D  G  P  S  S  P  T  F  S  L  V  S  S  N  P  F  G  F  K  E  P  L  S  N  G  G  S  R  M  W  T  P  G  Q  S  G  T  C  S  P  A  V  G  P  C  M  D  Q  T  A  D  V  P  M  S  D  A  I  S  A  E  F  A  F  G  S  N  M  K  G  V  V  K  P  W  E  G  E  R  I  H  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42065" stop="42313"/>
                    <exon start="45897" stop="46607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFHCGAIDGVVMTSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYRKQGCKPVTRIDIGGSVSVSSSSYQLSPGASYNPSPVSSSIPSPVSSHYVANVQNNSDPNSLIPWLKNLSSGSSPSLSNFPHHLCIPGGSISAPVTPPLSSPTASTPRMNDNWENPTANSTWIQQHYPFLPSSTPPSPGRQTPPDSGWLSGVQTPQDGPSSPTFSLVSSNPFGFKEPLSNGGSRMWTPGQSGTCSPAVGPCMDQTADVPMSDAISAEFAFGSNMKGVVKPWEGERIHEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44409" e_stop="45703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="44409" e_stop="45703" e_length="1295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44409" stop="45194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44930" stop="45703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAAGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCTACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGC</gDNA_template>
            <first_frame> L  E  R  C  R  F  I  C  *  P  C  C  M  W  S  I  M  *  R  R  I  V  I  K  I  A  N  F  G  S  R  I  T  V  T  I  *  S  *  R  H  C  L  K  G  H  H  Y  A  E  V  L  K  A  S  I  S  W  D  K  *  Y  F  N  Y  V  L  *  F  L  G  C  F  F  G  Q  Q  P  Y  F  *  L  P  S  Y  C  Y  I  Y  L  K  L  C  G  *  P  *  L  E  N  F  F  K  M  C  K  E  I  R  N  S  A  I  N  V  D  G  F  L  V  L  V  H  Y  C  F  S  *  S  L  F  *  L  G  S  H  Q  M  Y  *  P  *  Y  R  L  S  *  K  V  I  T  L  C  C  *  L  F  C  Q  I  I  R  C  K  N  Y  H  V  V  D  T  K  H  K  Q  G  I  V  L  *  I  Y  *  H  V  F  F  L  E  G  R  S  W  L  V  N  V  V  G  S  W  F  R  Q  I  C  A  P  L  Q  E  H  R  Y  S  L  S  C  S  G  S  S  L  L  V  P  H  P  C  P  H  D  *  C  V  G  S  M  S  D  W  V  N  G  F  W  S  L  T  K  I  D  G  E  N  L  D  N  F  N  D  T  N  T  K  A  K  G  N  *  R  K  M  E  Y  L  V  Y  R  N  F  Y  V  Y  F  N  L  L  H  Y  S  P  Q  V  F  H  I  I  S  H  N  L  G  F  I  S  L  F  *  I  F  *  L  F  L  G  K  Y  P  H  P  Y  P  *  M  D  S  Y  P  Q  I  L  R  I  R  S  *  K  I  Q  P  L  D  L  Q  L  Y  R  T  S  A  P  E  S  K  Q  L  R  M  *  V  L  L  I  P  *  Q  N  L  Y  A  H  F  Q  E  R  E  L  L  I  S  I  G  I  L  V  L  L  I  D  V  C  R  S  A  D  I  L  L  S  N  W  C  I  N  A  L  F  C  W  I  I  D  V  Y  L  V  *  V  K  P  S  Y  T  S  P  L  I  *  V  V   </first_frame>
            <second_frame>  *  K  D  V  G  S  Y  V  D  P  V  A  C  G  V  *  C  R  G  E  L  *  *  K  *  Q  T  L  G  P  A  *  L  L  L  Y  E  A  E  D  I  A  *  R  D  T  I  M  L  R  F  *  K  R  V  S  P  G  T  N  N  I  L  T  T  F  Y  N  F  L  V  A  S  L  D  S  N  L  T  F  N  Y  R  A  T  V  T  S  T  *  N  S  V  V  D  L  N  W  K  I  S  L  K  C  V  K  K  *  G  I  L  Q  *  M  W  M  A  F  W  F  L  F  I  I  V  S  L  S  H  C  F  D  L  V  A  T  K  C  I  S  R  D  T  G  Y  R  K  R  S  L  H  C  V  A  S  F  F  A  K  L  L  G  A  R  T  I  M  W  W  I  P  N  T  N  R  A  L  Y  S  E  S  T  D  M  F  F  F  L  K  G  E  V  G  W  S  M  W  W  E  V  G  S  D  K  Y  V  H  L  Y  R  N  I  D  I  V  *  V  A  R  A  L  H  F  W  C  H  T  H  V  H  T  T  S  V  W  D  P  C  P  I  G  S  T  D  F  G  L  *  P  K  L  M  G  K  I  W  T  I  L  M  I  L  I  Q  K  L  R  E  I  E  E  K  W  N  T  L  Y  I  E  I  F  M  S  T  L  I  S  F  T  I  L  L  K  F  F  T  *  Y  L  I  I  *  V  L  F  L  Y  F  R  Y  F  N  Y  F  *  A  N  T  H  T  H  I  R  K  W  I  H  I  P  K  S  *  E  L  D  H  E  K  S  N  L  *  I  C  N  C  I  G  H  P  H  P  S  P  S  N  L  G  C  R  Y  F  S  F  H  N  K  I  Y  M  L  I  F  K  S  E  S  F  *  F  R  *  G  F  W  C  C  *  *  M  Y  A  D  Q  R  I  Y  Y  *  V  T  G  V  S  M  H  S  F  V  G  S  L  M  Y  I  W  Y  K  *  N  Q  V  T  L  H  L  *  F  K  *  L  </second_frame>
            <third_frame>   R  K  M  *  V  H  M  L  T  L  L  H  V  E  Y  N  V  E  E  N  C  D  K  N  S  K  L  W  V  P  H  N  C  Y  Y  M  K  L  K  T  L  L  K  G  T  P  L  C  *  G  F  E  S  E  Y  L  L  G  Q  I  I  F  *  L  R  S  I  I  S  W  L  L  L  W  T  A  T  L  L  L  I  T  E  L  L  L  H  L  L  E  T  L  W  L  T  L  T  G  K  F  L  *  N  V  *  R  N  K  E  F  C  N  K  C  G  W  L  F  G  S  C  S  L  L  F  L  L  V  T  V  L  T  W  *  P  P  N  V  L  A  V  I  Q  V  I  V  K  G  H  Y  I  V  L  L  A  F  L  P  N  Y  *  V  Q  E  L  S  C  G  G  Y  Q  T  Q  T  G  H  C  T  L  N  L  L  T  C  F  F  S  *  R  E  K  L  V  G  Q  C  G  G  K  L  V  P  T  N  M  C  T  F  T  G  T  *  I  *  S  K  L  L  G  L  F  T  F  G  A  T  P  M  S  T  R  L  V  C  G  I  H  V  R  L  G  Q  R  I  L  V  F  D  Q  N  *  W  G  K  S  G  Q  F  *  *  Y  *  Y  K  S  *  G  K  L  K  K  N  G  I  P  C  I  *  K  F  L  C  L  L  *  S  P  S  L  F  S  S  S  F  S  H  N  I  S  *  F  R  F  Y  F  S  I  L  D  I  L  I  I  F  R  Q  I  P  T  P  I  S  V  N  G  F  I  S  P  N  L  K  N  *  I  M  K  N  P  T  S  R  S  A  I  V  S  D  I  R  T  R  V  Q  A  T  *  D  V  G  T  S  H  S  I  T  K  S  I  C  S  F  S  R  A  R  A  S  D  F  D  R  D  F  G  A  A  D  R  C  M  Q  I  S  G  Y  I  T  E  *  L  V  Y  Q  C  T  L  L  L  D  H  *  C  I  S  G  I  S  K  T  K  L  H  F  T  S  N  L  S  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44749" stop="45057"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MWMAFWFLFIIVSLSHCFDLVATKCISRDTGYRKRSLHCVASFFAKLLGARTIMWWIPNTNRALYSESTDMFFFLKGEVGWSMWWEVGSDKYVHLYRNIDIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="52819" PGL_stop="48392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52804" e_stop="52597"/>
            <exon e_start="51107" e_stop="50200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="52804" e_stop="52597" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52596" i_stop="51108" i_length="1489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51107" e_stop="50200" e_length="908"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52804" stop="52597"/>
              <exon start="51107" stop="50523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52804" stop="52597"/>
              <exon start="51107" stop="50791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51095" stop="50516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50765" stop="50200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50765" stop="50227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50753" stop="50255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207228" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCG : GACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAAAGTGCAGTCCCTTGCATCTGGTGATAT</gDNA_template>
            <first_frame> K  K  I  K  L  *  E  K  K  K  E  D  L  Y  I  Y  *  L  *  G  N  L  I  *  F  I  Y  L  S  T  K  R  C  *  N  N  G  A  P  S  Q  F  G  F  Q  V  C  Y  S  R  R  S  *  S  F  F  D  F  L  F  *  G  F  *  S  T  C  S  I   : G  L  *  *  V  W  R  *  Q  R  P  G  *  F  *  S  S  H  R  F  K  H  C  K  N  G  *  A  *  R  I  *  H  S  S  C  T  P  N  E  W  N  S  Q  E  H  K  F  D  E  S  S  R  Y  S  S  *  G  T  F  Q  *  T  V  I  S  *  H  W  R  S  *  *  E  V  S  Y  G  W  M  E  R  E  I  *  R  R  F  Y  N  S  E  T  E  Q  Y  L  E  E  F  *  E  D  Y  *  Q  Q  L  *  *  K  *  K  M  W  F  R  I  I  W  S  K  C  R  S  W  K  Q  G  *  E  L  Y  H  G  Q  A  S  G  W  T  A  R  N  *  S  *  F  T  F  V  H  K  R  K  L  *  E  G  G  T  H  N  *  W  N  G  *  S  *  S  L  *  C  *  F  N  S  T  D  *  R  K  *  H  K  N  K  S  S  V  P  T  I  S  *  K  Y  R  L  C  N  S  V  I  S  K  C  R  R  K  Y  M  P  P  K  S  R  K  I  F  L  L  R  F  A  T  F  W  *  N  W  G  L  D  T  C  I  S  S  S  N  V  G  E  *  A  *  *  V  E  *  R  F  L  L  K  W  W  V  P  S  *  R  *  H  R  L  E  S  V  H  G  R  R  Q  G  V  D  H  V  G  C  G  S  G  Y  V  A  R  S  T  R  K  S  A  V  P  C  I  W  *  Y </first_frame>
            <second_frame>  K  R  *  N  C  R  R  K  K  K  K  I  Y  I  Y  I  D  Y  E  V  I  *  F  N  L  F  I  Y  R  P  K  D  V  E  I  M  E  P  H  H  N  S  D  S  K  F  A  T  P  G  E  V  D  P  S  S  T  S  Y  S  R  V  S  N  P  L  V  Q  S  :  D  C  S  K  F  G  D  N  R  G  L  D  D  F  D  P  V  I  G  S  N  I  V  K  T  G  K  H  E  E  Y  N  I  V  A  V  H  L  M  N  G  T  P  K  N  T  S  L  M  S  R  L  D  T  Q  A  E  E  L  F  S  K  Q  S  F  H  D  T  G  E  A  S  E  R  Y  H  M  D  G  W  K  G  K  S  E  E  D  S  I  T  L  R  Q  N  N  I  L  R  S  S  E  K  I  I  S  S  N  C  D  K  S  R  K  C  G  S  E  S  F  G  Q  S  A  G  H  G  N  K  D  K  S  Y  I  M  G  K  P  V  G  G  Q  Q  E  T  D  H  D  S  P  L  C  T  K  E  N  Y  E  K  E  A  H  T  T  N  G  M  V  K  A  E  V  S  N  V  N  L  T  Q  Q  T  N  G  S  D  I  K  I  N  L  L  Y  P  Q  L  A  E  N  I  D  C  A  T  Q  S  S  Q  N  A  E  G  S  I  C  H  Q  N  Q  E  K  Y  F  C  Y  D  S  P  L  F  G  E  T  G  A  W  I  P  V  S  V  P  P  M  S  E  S  E  H  D  E  W  S  R  G  F  C  S  N  G  G  Y  L  P  E  G  D  T  D  W  N  Q  C  M  G  E  D  K  E  L  T  M  W  D  V  V  L  D  M  L  L  A  A  R  G  K  V  Q  S  L  A  S  G  D   </second_frame>
            <third_frame>   K  D  K  T  V  G  E  K  K  R  R  F  I  Y  I  L  I  M  R  *  F  N  L  I  Y  L  F  I  D  Q  K  M  L  K  *  W  S  P  I  T  I  R  I  P  S  L  L  L  Q  E  K  L  I  L  L  R  L  L  I  L  G  F  L  I  H  L  F  N  R :   T  V  V  S  L  E  I  T  E  A  W  M  I  L  I  Q  S  *  V  Q  T  L  *  K  R  V  S  M  K  N  I  T  *  *  L  Y  T  *  *  M  E  L  P  R  T  Q  V  *  *  V  V  *  I  L  K  L  R  N  F  S  V  N  S  H  F  M  T  L  E  K  L  V  R  G  I  I  W  M  D  G  K  G  N  L  K  K  I  L  *  L  *  D  R  T  I  S  *  G  V  L  R  R  L  L  A  A  T  V  I  K  V  E  N  V  V  P  N  H  L  V  K  V  Q  V  M  E  T  R  I  R  V  I  S  W  A  S  Q  W  V  D  S  K  K  L  I  M  I  H  L  C  A  Q  K  K  T  M  R  R  R  H  T  Q  L  M  E  W  L  K  L  K  S  L  M  L  I  *  L  N  R  L  T  E  V  T  *  K  *  I  F  C  T  H  N  *  L  K  I  *  I  V  Q  L  S  H  L  K  M  Q  K  E  V  Y  A  T  K  I  K  K  N  I  S  A  T  I  R  H  F  L  V  K  L  G  L  G  Y  L  Y  Q  F  L  Q  C  R  R  V  S  M  M  S  G  V  E  V  S  A  Q  M  V  G  T  F  L  K  V  T  Q  I  G  I  S  A  W  E  K  T  R  S  *  P  C  G  M  W  F  W  I  C  C  S  Q  H  E  E  K  C  S  P  L  H  L  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52737" stop="52597"/>
                    <exon start="51107" stop="50202"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNLFIYRPKDVEIMEPHHNSDSKFATPGEVDPSSTSYSRVSNPLVQSDCSKFGDNRGLDDFDPVIGSNIVKTGKHEEYNIVAVHLMNGTPKNTSLMSRLDTQAEELFSKQSFHDTGEASERYHMDGWKGKSEEDSITLRQNNILRSSEKIISSNCDKSRKCGSESFGQSAGHGNKDKSYIMGKPVGGQQETDHDSPLCTKENYEKEAHTTNGMVKAEVSNVNLTQQTNGSDIKINLLYPQLAENIDCATQSSQNAEGSICHQNQEKYFCYDSPLFGETGAWIPVSVPPMSESEHDEWSRGFCSNGGYLPEGDTDWNQCMGEDKELTMWDVVLDMLLAARGKVQSLASGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50102" e_stop="49713"/>
            <exon e_start="49371" e_stop="49239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50102" e_stop="49713" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.828">
            <gDNA_intron_boundary i_start="49712" i_stop="49372" i_length="341"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="49371" e_stop="49239" e_length="133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50102" stop="49713"/>
              <exon start="49371" stop="49239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50102" stop="49713"/>
              <exon start="49371" stop="49239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50098" stop="49713"/>
              <exon start="49371" stop="49353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAGGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAG : ATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCAC</gDNA_template>
            <first_frame> E  I  L  E  A  D  P  P  K  W  L  P  D  S  A  S  S  T  C  M  L  C  N  V  R  F  H  P  I  M  C  S  R  H  H  C  R  F  C  G  G  L  F  C  N  E  C  T  K  G  R  S  L  L  P  E  K  F  R  T  G  E  P  Q  R  V  C  D  V  C  F  V  R  L  E  S  V  Q  P  Y  L  M  D  Q  V  S  R  A  A  Q  L  P  T  H  D  L  T  D  L  S  T  L  R  S  W  V  N  F  P  W  G  Q  S  M  E  Y  E  I  Y  K  A  A  N  T  I  R  G  Y  E  K  :  I  G  L  L  S  S  E  K  R  I  P  E  A  I  L  Q  N  A  R  G  L  A  I  L  T  V  V  K  V  G  V  M  V  T  Y  N  I  G  T  G  L  V  I  A  </first_frame>
            <second_frame>  K  F  L  R  Q  I  L  L  N  G  C  L  T  V  H  L  P  L  V  C  C  V  M  C  G  S  T  L  S  C  A  A  G  I  I  V  D  F  V  E  D  Y  F  A  M  N  V  L  K  E  G  A  C  S  L  K  N  F  A  L  G  N  H  N  E  Y  V  M  Y  V  L  Y  V  S  S  L  C  S  H  T  *  W  I  K  *  V  V  L  L  S  C  Q  P  M  T  S  L  T  *  A  H  *  D  P  G  *  T  S  H  G  D  S  Q  W  S  M  K  F  I  R  L  L  T  L  F  G  A  M  R  R :   L  V  Y  *  V  L  R  R  E  F  Q  K  L  F  Y  K  M  Q  E  A  L  P  F  L  R  S  *  K  L  E  *  W  *  P  T  T  S  E  L  D  W  *  L  H </second_frame>
            <third_frame>   N  S  *  G  R  S  S  *  M  A  A  *  Q  C  I  F  H  L  Y  V  V  *  C  A  V  P  P  Y  H  V  Q  Q  A  S  L  S  I  L  W  R  I  I  L  Q  *  M  Y  *  R  K  E  L  A  P  *  K  I  S  H  W  G  T  T  T  S  M  *  C  M  F  C  T  S  R  V  C  A  A  I  P  N  G  S  S  K  S  C  C  S  V  A  N  P  *  P  H  *  L  E  H  T  E  I  L  G  K  L  P  M  G  T  V  N  G  V  *  N  L  *  G  C  *  H  Y  S  G  L  *  E   : D  W  F  I  E  F  *  E  E  N  S  R  S  Y  S  T  K  C  K  R  P  C  H  S  Y  G  R  E  S  W  S  D  G  N  L  Q  H  R  N  W  I  G  N  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50102" stop="49713"/>
                    <exon start="49371" stop="49240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILEADPPKWLPDSASSTCMLCNVRFHPIMCSRHHCRFCGGLFCNECTKGRSLLPEKFRTGEPQRVCDVCFVRLESVQPYLMDQVSRAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYEKIGLLSSEKRIPEAILQNARGLAILTVVKVGVMVTYNIGTGLVIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52819" e_stop="52597"/>
            <exon e_start="49371" e_stop="49171"/>
            <exon e_start="48510" e_stop="48392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.828" e_score="0.991"/>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="52819" e_stop="52597" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.828">
            <gDNA_intron_boundary i_start="52596" i_stop="49372" i_length="3225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49371" e_stop="49171" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49170" i_stop="48511" i_length="660"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="48510" e_stop="48392" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52819" stop="52597"/>
              <exon start="49371" stop="49171"/>
              <exon start="48510" stop="48392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATCCAATTTCTCAAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCG : ATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCACGTAGAGAAGATGGTTCATGGTCTCCCCCGTCGGCCATTTCTTCTTTCGGTGTAGGATGGGGTGCTCAG : GTTGGTGGAGAACTTACTGACTTCATTATTGTCCTGAGAACTAGTGATGCTGTCAAGACTTTTGGTGGTGATGCACATCTTTCAGTTGGAGCTGGTGTGAGTGCTGCTGCGGGGATCAT</gDNA_template>
            <first_frame> L  I  Q  F  L  K  K  I  K  L  *  E  K  K  K  E  D  L  Y  I  Y  *  L  *  G  N  L  I  *  F  I  Y  L  S  T  K  R  C  *  N  N  G  A  P  S  Q  F  G  F  Q  V  C  Y  S  R  R  S  *  S  F  F  D  F  L  F  *  G  F  *  S  T  C  S  I   : D  W  F  I  E  F  *  E  E  N  S  R  S  Y  S  T  K  C  K  R  P  C  H  S  Y  G  R  E  S  W  S  D  G  N  L  Q  H  R  N  W  I  G  N  C  T  *  R  R  W  F  M  V  S  P  V  G  H  F  F  F  R  C  R  M  G  C  S   : G  W  W  R  T  Y  *  L  H  Y  C  P  E  N  *  *  C  C  Q  D  F  W  W  *  C  T  S  F  S  W  S  W  C  E  C  C  C  G  D  H </first_frame>
            <second_frame>  S  S  N  F  S  K  R  *  N  C  R  R  K  K  K  K  I  Y  I  Y  I  D  Y  E  V  I  *  F  N  L  F  I  Y  R  P  K  D  V  E  I  M  E  P  H  H  N  S  D  S  K  F  A  T  P  G  E  V  D  P  S  S  T  S  Y  S  R  V  S  N  P  L  V  Q  S  :  I  G  L  L  S  S  E  K  R  I  P  E  A  I  L  Q  N  A  R  G  L  A  I  L  T  V  V  K  V  G  V  M  V  T  Y  N  I  G  T  G  L  V  I  A  R  R  E  D  G  S  W  S  P  P  S  A  I  S  S  F  G  V  G  W  G  A  Q  :  V  G  G  E  L  T  D  F  I  I  V  L  R  T  S  D  A  V  K  T  F  G  G  D  A  H  L  S  V  G  A  G  V  S  A  A  A  G  I   </second_frame>
            <third_frame>   H  P  I  S  Q  K  D  K  T  V  G  E  K  K  R  R  F  I  Y  I  L  I  M  R  *  F  N  L  I  Y  L  F  I  D  Q  K  M  L  K  *  W  S  P  I  T  I  R  I  P  S  L  L  L  Q  E  K  L  I  L  L  R  L  L  I  L  G  F  L  I  H  L  F  N  R :   L  V  Y  *  V  L  R  R  E  F  Q  K  L  F  Y  K  M  Q  E  A  L  P  F  L  R  S  *  K  L  E  *  W  *  P  T  T  S  E  L  D  W  *  L  H  V  E  K  M  V  H  G  L  P  R  R  P  F  L  L  S  V  *  D  G  V  L  R :   L  V  E  N  L  L  T  S  L  L  S  *  E  L  V  M  L  S  R  L  L  V  V  M  H  I  F  Q  L  E  L  V  *  V  L  L  R  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52737" stop="52597"/>
                    <exon start="49371" stop="49171"/>
                    <exon start="48510" stop="48394"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNLFIYRPKDVEIMEPHHNSDSKFATPGEVDPSSTSYSRVSNPLVQSIGLLSSEKRIPEAILQNARGLAILTVVKVGVMVTYNIGTGLVIARREDGSWSPPSAISSFGVGWGAQVGGELTDFIIVLRTSDAVKTFGGDAHLSVGAGVSAAAGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="57124" PGL_stop="56634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57124" e_stop="56634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="57124" e_stop="56634" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57124" stop="56634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTAAGTAACCAAAATATCTCTTATAACACAAGGGAGAAAAAAAAAATTAGATTGAAAAATGGTTAGGCTTTCTGTTACAAAAAATGGTGCAAACCTTGCAACAATATTCATGGTTGGCATGATAGCTGCATCGATCTCGATGATGGCGATCGTTATATTTGCGTGTGCAAAATCCTCCACGAAACGTAAGAATAAGAATAATTCATATAGTCGTGGTGATGGTGGTGATGATAATAAAGCACAAAAAACTCGTGCAAAAGAAGAAATGTTAGTTAGCACTATCGAAATTGCAACAACTATCGTGGATATTCCATCTACTTTTGATGTTTGCGATAATAATAATGATGGTGCGAAAGATACTCGATGTCATGATGGCGATACAATGAAAAATGAAGTTAGTATTGATCGTAACGATAATAATTATGTTAGCGGTGACAATAATAATAATAATATGGGTACAAGTCATACTCATGATGTTAGCACAAAT</gDNA_template>
            <first_frame> I  I  K  *  P  K  Y  L  L  *  H  K  G  E  K  K  N  *  I  E  K  W  L  G  F  L  L  Q  K  M  V  Q  T  L  Q  Q  Y  S  W  L  A  *  *  L  H  R  S  R  *  W  R  S  L  Y  L  R  V  Q  N  P  P  R  N  V  R  I  R  I  I  H  I  V  V  V  M  V  V  M  I  I  K  H  K  K  L  V  Q  K  K  K  C  *  L  A  L  S  K  L  Q  Q  L  S  W  I  F  H  L  L  L  M  F  A  I  I  I  M  M  V  R  K  I  L  D  V  M  M  A  I  Q  *  K  M  K  L  V  L  I  V  T  I  I  I  M  L  A  V  T  I  I  I  I  I  W  V  Q  V  I  L  M  M  L  A  Q   </first_frame>
            <second_frame>  *  L  S  N  Q  N  I  S  Y  N  T  R  E  K  K  K  I  R  L  K  N  G  *  A  F  C  Y  K  K  W  C  K  P  C  N  N  I  H  G  W  H  D  S  C  I  D  L  D  D  G  D  R  Y  I  C  V  C  K  I  L  H  E  T  *  E  *  E  *  F  I  *  S  W  *  W  W  *  *  *  *  S  T  K  N  S  C  K  R  R  N  V  S  *  H  Y  R  N  C  N  N  Y  R  G  Y  S  I  Y  F  *  C  L  R  *  *  *  *  W  C  E  R  Y  S  M  S  *  W  R  Y  N  E  K  *  S  *  Y  *  S  *  R  *  *  L  C  *  R  *  Q  *  *  *  *  Y  G  Y  K  S  Y  S  *  C  *  H  K  </second_frame>
            <third_frame>   N  *  V  T  K  I  S  L  I  T  Q  G  R  K  K  K  L  D  *  K  M  V  R  L  S  V  T  K  N  G  A  N  L  A  T  I  F  M  V  G  M  I  A  A  S  I  S  M  M  A  I  V  I  F  A  C  A  K  S  S  T  K  R  K  N  K  N  N  S  Y  S  R  G  D  G  G  D  D  N  K  A  Q  K  T  R  A  K  E  E  M  L  V  S  T  I  E  I  A  T  T  I  V  D  I  P  S  T  F  D  V  C  D  N  N  N  D  G  A  K  D  T  R  C  H  D  G  D  T  M  K  N  E  V  S  I  D  R  N  D  N  N  Y  V  S  G  D  N  N  N  N  N  M  G  T  S  H  T  H  D  V  S  T  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57065" stop="56634"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVRLSVTKNGANLATIFMVGMIAASISMMAIVIFACAKSSTKRKNKNNSYSRGDGGDDNKAQKTRAKEEMLVSTIEIATTIVDIPSTFDVCDNNNDGAKDTRCHDGDTMKNEVSIDRNDNNYVSGDNNNNNMGTSHTHDVSTN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="60588" PGL_stop="60073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60588" e_stop="60073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="60588" e_stop="60073" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60588" stop="60073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60587" stop="60081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGATCCCAATGATGTCAATGGCCGTGTTTGGTTCTACTAATAATTGCTTCGAAAAGCCTAGGCCGACGACGCCAACGGGTGTTGTTGTTGCTGGTGGAGGAGAAATTGCTTGTAGCAGTACAAGTACTGCTACTTCAAGATCAATTGGTAGTAGAAGAAGAATGGGTAATAATAATGTTGATGGTGGCAGGGGAAAAACTTGCCCTAGTGTTATGCTTGTTAAGGAAATACTTCCGTCACTTATCCTACGTTAGTCAAGGCGTGTATAAACTGGCTTGAACACCACGAAAAAAAAAAAAACACTATATGTGCTTGTGGATTTCGATATGGTAAATTGTGTGCAATTCGTAAAGGCCTTTGCTCTAGTTGTTATATATTTGTGTATGTTTGTTCTTGTGAGTTATGTACGTACTCTAGTAGTACTTTGTGCTCTAGCTTAGCACATATAATTAACTTAATTTTAATATCGTTGTATATATTATATATATCTACTTAATATATTTACTATAACAAG</gDNA_template>
            <first_frame> V  D  P  N  D  V  N  G  R  V  W  F  Y  *  *  L  L  R  K  A  *  A  D  D  A  N  G  C  C  C  C  W  W  R  R  N  C  L  *  Q  Y  K  Y  C  Y  F  K  I  N  W  *  *  K  K  N  G  *  *  *  C  *  W  W  Q  G  K  N  L  P  *  C  Y  A  C  *  G  N  T  S  V  T  Y  P  T  L  V  K  A  C  I  N  W  L  E  H  H  E  K  K  K  N  T  I  C  A  C  G  F  R  Y  G  K  L  C  A  I  R  K  G  L  C  S  S  C  Y  I  F  V  Y  V  C  S  C  E  L  C  T  Y  S  S  S  T  L  C  S  S  L  A  H  I  I  N  L  I  L  I  S  L  Y  I  L  Y  I  S  T  *  Y  I  Y  Y  N  K </first_frame>
            <second_frame>  S  I  P  M  M  S  M  A  V  F  G  S  T  N  N  C  F  E  K  P  R  P  T  T  P  T  G  V  V  V  A  G  G  G  E  I  A  C  S  S  T  S  T  A  T  S  R  S  I  G  S  R  R  R  M  G  N  N  N  V  D  G  G  R  G  K  T  C  P  S  V  M  L  V  K  E  I  L  P  S  L  I  L  R  *  S  R  R  V  *  T  G  L  N  T  T  K  K  K  K  T  L  Y  V  L  V  D  F  D  M  V  N  C  V  Q  F  V  K  A  F  A  L  V  V  I  Y  L  C  M  F  V  L  V  S  Y  V  R  T  L  V  V  L  C  A  L  A  *  H  I  *  L  T  *  F  *  Y  R  C  I  Y  Y  I  Y  L  L  N  I  F  T  I  T   </second_frame>
            <third_frame>   R  S  Q  *  C  Q  W  P  C  L  V  L  L  I  I  A  S  K  S  L  G  R  R  R  Q  R  V  L  L  L  L  V  E  E  K  L  L  V  A  V  Q  V  L  L  L  Q  D  Q  L  V  V  E  E  E  W  V  I  I  M  L  M  V  A  G  E  K  L  A  L  V  L  C  L  L  R  K  Y  F  R  H  L  S  Y  V  S  Q  G  V  Y  K  L  A  *  T  P  R  K  K  K  K  H  Y  M  C  L  W  I  S  I  W  *  I  V  C  N  S  *  R  P  L  L  *  L  L  Y  I  C  V  C  L  F  L  *  V  M  Y  V  L  *  *  Y  F  V  L  *  L  S  T  Y  N  *  L  N  F  N  I  V  V  Y  I  I  Y  I  Y  L  I  Y  L  L  *  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60363" stop="60091"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNTSVTYPTLVKACINWLEHHEKKKNTICACGFRYGKLCAIRKGLCSSCYIFVYVCSCELCTYSSSTLCSSLAHIINLILISLYILYIST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60574" stop="60308"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQWPCLVLLIIASKSLGRRRQRVLLLLVEEKLLVAVQVLLLQDQLVVEEEWVIIMLMVAGEKLALVLCLLRKYFRHLSYVSQGVYKLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60587" stop="60333"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIPMMSMAVFGSTNNCFEKPRPTTPTGVVVAGGGEIACSSTSTATSRSIGSRRRMGNNNVDGGRGKTCPSVMLVKEILPSLILR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="61903" PGL_stop="62438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61903" e_stop="62438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="61903" e_stop="62438" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61903" stop="62438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTTTGCCGATGAAAATGCACATTAGAACTCTTAGTACCCAACTCTTACTTGTACTGTTTCTTCTACTTGTTTTATCAAAAGGGTTTGTTGTGGGAGATCTAGTTCGAAAGCCATTGGGTAGTAGCAGAAGGAGAAACTCCAATCGGGTACCCGAATGTGGCAATTTCGGGTCAAAATCTGATTGCTCGCAGAACCAAAATTGTCGATGGTGCAGAAGTGTTGTTCTTGATGACGCTTGTTTCTTCAAATCTGAAGCTGCTAGATTACCCTCTCAGATCTTCACTTGTAATCTTCTTAGATTGAGATAAAAGTTACCTTTTTTTCCAATTATGTTGTTTTTTATCCCTTGAATTTTGAGTTTTTGGGTGAAGTTCATTTGAGCTGTGTTATGAGTGAGTACGTTTTCTGTTTTTAGGCTTACCATTATGCTTTTGAAGAAGTAAAAAGATGTGCTTTTGTAAATAATTGTGTTTGAAAAATGAAGAATTGAGTGGTGCTTTCTGATATACTAGAGAGACCAGTTGATTTGCTG</gDNA_template>
            <first_frame> L  L  L  P  M  K  M  H  I  R  T  L  S  T  Q  L  L  L  V  L  F  L  L  L  V  L  S  K  G  F  V  V  G  D  L  V  R  K  P  L  G  S  S  R  R  R  N  S  N  R  V  P  E  C  G  N  F  G  S  K  S  D  C  S  Q  N  Q  N  C  R  W  C  R  S  V  V  L  D  D  A  C  F  F  K  S  E  A  A  R  L  P  S  Q  I  F  T  C  N  L  L  R  L  R  *  K  L  P  F  F  P  I  M  L  F  F  I  P  *  I  L  S  F  W  V  K  F  I  *  A  V  L  *  V  S  T  F  S  V  F  R  L  T  I  M  L  L  K  K  *  K  D  V  L  L  *  I  I  V  F  E  K  *  R  I  E  W  C  F  L  I  Y  *  R  D  Q  L  I  C   </first_frame>
            <second_frame>  F  F  C  R  *  K  C  T  L  E  L  L  V  P  N  S  Y  L  Y  C  F  F  Y  L  F  Y  Q  K  G  L  L  W  E  I  *  F  E  S  H  W  V  V  A  E  G  E  T  P  I  G  Y  P  N  V  A  I  S  G  Q  N  L  I  A  R  R  T  K  I  V  D  G  A  E  V  L  F  L  M  T  L  V  S  S  N  L  K  L  L  D  Y  P  L  R  S  S  L  V  I  F  L  D  *  D  K  S  Y  L  F  F  Q  L  C  C  F  L  S  L  E  F  *  V  F  G  *  S  S  F  E  L  C  Y  E  *  V  R  F  L  F  L  G  L  P  L  C  F  *  R  S  K  K  M  C  F  C  K  *  L  C  L  K  N  E  E  L  S  G  A  F  *  Y  T  R  E  T  S  *  F  A  </second_frame>
            <third_frame>   S  F  A  D  E  N  A  H  *  N  S  *  Y  P  T  L  T  C  T  V  S  S  T  C  F  I  K  R  V  C  C  G  R  S  S  S  K  A  I  G  *  *  Q  K  E  K  L  Q  S  G  T  R  M  W  Q  F  R  V  K  I  *  L  L  A  E  P  K  L  S  M  V  Q  K  C  C  S  *  *  R  L  F  L  Q  I  *  S  C  *  I  T  L  S  D  L  H  L  *  S  S  *  I  E  I  K  V  T  F  F  S  N  Y  V  V  F  Y  P  L  N  F  E  F  L  G  E  V  H  L  S  C  V  M  S  E  Y  V  F  C  F  *  A  Y  H  Y  A  F  E  E  V  K  R  C  A  F  V  N  N  C  V  *  K  M  K  N  *  V  V  L  S  D  I  L  E  R  P  V  D  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61903" stop="62214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLPMKMHIRTLSTQLLLVLFLLLVLSKGFVVGDLVRKPLGSSRRRNSNRVPECGNFGSKSDCSQNQNCRWCRSVVLDDACFFKSEAARLPSQIFTCNLLRLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="76730" PGL_stop="80226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76730" e_stop="76957"/>
            <exon e_start="77076" e_stop="77297"/>
            <exon e_start="78393" e_stop="78590"/>
            <exon e_start="78849" e_stop="78910"/>
            <exon e_start="80146" e_stop="80226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76730" e_stop="76957" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="76958" i_stop="77075" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77076" e_stop="77297" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77298" i_stop="78392" i_length="1095"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78393" e_stop="78590" e_length="198"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78591" i_stop="78848" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78849" e_stop="78910" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78911" i_stop="80145" i_length="1235"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="80146" e_stop="80226" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76730" stop="76957"/>
              <exon start="77076" stop="77297"/>
              <exon start="78393" stop="78590"/>
              <exon start="78849" stop="78910"/>
              <exon start="80146" stop="80226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76735" stop="76957"/>
              <exon start="77076" stop="77250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76735" stop="76957"/>
              <exon start="77076" stop="77217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGCTCACTTCTTCCTATATTCAATTTAGTTCATCACCCCTGTTTCTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGGAGCTAATGGATCAATAAGTTTGAACATTAGAGATGCTGATGATAATTTGAACAATAAAAATTGTGCTAATTCAGTATCACATCAAGATTCTTCCTCAAACTCAACTTGCAGTTTTGTCACGGTTCCCTTCATCCAAAAG : ATCATAGCAGAGACGTTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCCGATAAAGGAATGGTGACTTTTCCGGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTGTTGGACACATTTCTGGTGCTCATTTTAACCCTGCTGTTACTATTGCTTTTGCATCTAACAAAAGGTTCCCTTGGAAACAG : GTACCTGCCTACGTGGCAGCTCAAGTGATTGGATCAACATTAGCAAGTGGGACCCTACGATTAATATTCAATGGGAAACATGATCACTTCGTTGGAACCTCACCTACTGGATCAGACGTTCAATCTCTTGTTCTCGAATTTATAATCACATTTTACCTTATGTTTGTCATTTCTGGTGTCGCAACTGATAATAGAGCC : ATTGGAGAACTTGCTGGTCTTGCTGTCGGGGCAACCGTATTGCTTAATGTGATGTTTGCCGG : GCCAATATCAGGGGCATCAATGAACCCAGCAAGGAGTTTGGGCCCAGCAATAGTGTCAAGCCATTACAAAGGTTTATGGGT</gDNA_template>
            <first_frame> V  C  S  L  L  P  I  F  N  L  V  H  H  P  C  F  F  F  S  *  I  M  G  D  Q  Q  I  G  G  G  A  N  G  S  I  S  L  N  I  R  D  A  D  D  N  L  N  N  K  N  C  A  N  S  V  S  H  Q  D  S  S  S  N  S  T  C  S  F  V  T  V  P  F  I  Q  K  :  I  I  A  E  T  L  G  T  Y  F  L  I  F  A  G  C  G  S  V  A  V  N  A  D  K  G  M  V  T  F  P  G  I  S  I  V  W  G  L  V  V  M  V  M  V  Y  S  V  G  H  I  S  G  A  H  F  N  P  A  V  T  I  A  F  A  S  N  K  R  F  P  W  K  Q  :  V  P  A  Y  V  A  A  Q  V  I  G  S  T  L  A  S  G  T  L  R  L  I  F  N  G  K  H  D  H  F  V  G  T  S  P  T  G  S  D  V  Q  S  L  V  L  E  F  I  I  T  F  Y  L  M  F  V  I  S  G  V  A  T  D  N  R  A  :  I  G  E  L  A  G  L  A  V  G  A  T  V  L  L  N  V  M  F  A  G :   P  I  S  G  A  S  M  N  P  A  R  S  L  G  P  A  I  V  S  S  H  Y  K  G  L  W   </first_frame>
            <second_frame>  F  A  H  F  F  L  Y  S  I  *  F  I  T  P  V  S  F  F  L  E  L  W  V  I  S  K  *  E  E  E  L  M  D  Q  *  V  *  T  L  E  M  L  M  I  I  *  T  I  K  I  V  L  I  Q  Y  H  I  K  I  L  P  Q  T  Q  L  A  V  L  S  R  F  P  S  S  K  R :   S  *  Q  R  R  *  G  R  I  S  *  Y  L  R  G  V  D  Q  W  R  *  M  P  I  K  E  W  *  L  F  R  G  Y  Q  *  C  G  G  W  W  *  W  S  W  F  T  L  L  D  T  F  L  V  L  I  L  T  L  L  L  L  L  L  L  H  L  T  K  G  S  L  G  N  R :   Y  L  P  T  W  Q  L  K  *  L  D  Q  H  *  Q  V  G  P  Y  D  *  Y  S  M  G  N  M  I  T  S  L  E  P  H  L  L  D  Q  T  F  N  L  L  F  S  N  L  *  S  H  F  T  L  C  L  S  F  L  V  S  Q  L  I  I  E  P :   L  E  N  L  L  V  L  L  S  G  Q  P  Y  C  L  M  *  C  L  P   : G  Q  Y  Q  G  H  Q  *  T  Q  Q  G  V  W  A  Q  Q  *  C  Q  A  I  T  K  V  Y  G  </second_frame>
            <third_frame>   L  L  T  S  S  Y  I  Q  F  S  S  S  P  L  F  L  F  F  L  N  Y  G  *  S  A  N  R  R  R  S  *  W  I  N  K  F  E  H  *  R  C  *  *  *  F  E  Q  *  K  L  C  *  F  S  I  T  S  R  F  F  L  K  L  N  L  Q  F  C  H  G  S  L  H  P  K   : D  H  S  R  D  V  R  D  V  F  L  D  I  C  G  V  W  I  S  G  G  E  C  R  *  R  N  G  D  F  S  G  D  I  N  S  V  G  V  G  G  D  G  H  G  L  L  C  W  T  H  F  W  C  S  F  *  P  C  C  Y  Y  C  F  C  I  *  Q  K  V  P  L  E  T   : G  T  C  L  R  G  S  S  S  D  W  I  N  I  S  K  W  D  P  T  I  N  I  Q  W  E  T  *  S  L  R  W  N  L  T  Y  W  I  R  R  S  I  S  C  S  R  I  Y  N  H  I  L  P  Y  V  C  H  F  W  C  R  N  *  *  *  S   : H  W  R  T  C  W  S  C  C  R  G  N  R  I  A  *  C  D  V  C  R  :  A  N  I  R  G  I  N  E  P  S  K  E  F  G  P  S  N  S  V  K  P  L  Q  R  F  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76790" stop="76957"/>
                    <exon start="77076" stop="77297"/>
                    <exon start="78393" stop="78590"/>
                    <exon start="78849" stop="78910"/>
                    <exon start="80146" stop="80224"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMGDQQIGGGANGSISLNIRDADDNLNNKNCANSVSHQDSSSNSTCSFVTVPFIQKIIAETLGTYFLIFAGCGSVAVNADKGMVTFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFASNKRFPWKQVPAYVAAQVIGSTLASGTLRLIFNGKHDHFVGTSPTGSDVQSLVLEFIITFYLMFVISGVATDNRAIGELAGLAVGATVLLNVMFAGPISGASMNPARSLGPAIVSSHYKGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="95655" PGL_stop="89049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95655" e_stop="95529"/>
            <exon e_start="95313" e_stop="95195"/>
            <exon e_start="94990" e_stop="94869"/>
            <exon e_start="94762" e_stop="94710"/>
            <exon e_start="93837" e_stop="93765"/>
            <exon e_start="93661" e_stop="93560"/>
            <exon e_start="93446" e_stop="93345"/>
            <exon e_start="93242" e_stop="93171"/>
            <exon e_start="93093" e_stop="93031"/>
            <exon e_start="92893" e_stop="92852"/>
            <exon e_start="91646" e_stop="91587"/>
            <exon e_start="91447" e_stop="91337"/>
            <exon e_start="91080" e_stop="90910"/>
            <exon e_start="90716" e_stop="90626"/>
            <exon e_start="89700" e_stop="89049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.801" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.786" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95655" e_stop="95529" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.712">
            <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95313" e_stop="95195" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.973">
            <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94990" e_stop="94869" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94762" e_stop="94710" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93837" e_stop="93765" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93661" e_stop="93560" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93446" e_stop="93345" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.965">
            <gDNA_intron_boundary i_start="93344" i_stop="93243" i_length="102"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93242" e_stop="93171" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="93170" i_stop="93094" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93093" e_stop="93031" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="93030" i_stop="92894" i_length="137"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="92893" e_stop="92852" e_length="42"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="92851" i_stop="91647" i_length="1205"/>
          </intron>
          <exon e_serial="11" e_score="0.983">
            <gDNA_exon_boundary e_start="91646" e_stop="91587" e_length="60"/>
          </exon>
          <intron i_serial="11" don_prob="0.907" acc_prob="0.801">
            <gDNA_intron_boundary i_start="91586" i_stop="91448" i_length="139"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="91447" e_stop="91337" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="91336" i_stop="91081" i_length="256"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="91080" e_stop="90910" e_length="171"/>
          </exon>
          <intron i_serial="13" don_prob="0.968" acc_prob="0.895">
            <gDNA_intron_boundary i_start="90909" i_stop="90717" i_length="193"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="90716" e_stop="90626" e_length="91"/>
          </exon>
          <intron i_serial="14" don_prob="0.786" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90625" i_stop="89701" i_length="925"/>
          </intron>
          <exon e_serial="15" e_score="0.962">
            <gDNA_exon_boundary e_start="89700" e_stop="89049" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95655" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95643" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="94762" stop="94710"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93560"/>
              <exon start="93446" stop="93345"/>
              <exon start="93242" stop="93176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95630" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="94762" stop="94710"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95600" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="94762" stop="94710"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93560"/>
              <exon start="93446" stop="93345"/>
              <exon start="93242" stop="93171"/>
              <exon start="93093" stop="93031"/>
              <exon start="92893" stop="92852"/>
              <exon start="91646" stop="91587"/>
              <exon start="91447" stop="91405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95599" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="94762" stop="94710"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93560"/>
              <exon start="93446" stop="93424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95594" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="94762" stop="94710"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93560"/>
              <exon start="93446" stop="93345"/>
              <exon start="93242" stop="93171"/>
              <exon start="93093" stop="93079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95582" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="94762" stop="94710"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="94762" stop="94710"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93560"/>
              <exon start="93446" stop="93353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93583" stop="93560"/>
              <exon start="93446" stop="93345"/>
              <exon start="93242" stop="93171"/>
              <exon start="93093" stop="93031"/>
              <exon start="92893" stop="92852"/>
              <exon start="91646" stop="91587"/>
              <exon start="91447" stop="91353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91407" stop="91337"/>
              <exon start="91080" stop="90910"/>
              <exon start="90716" stop="90656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91066" stop="90910"/>
              <exon start="90716" stop="90626"/>
              <exon start="89700" stop="89409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90970" stop="90910"/>
              <exon start="90716" stop="90626"/>
              <exon start="89700" stop="89181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590039" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90715" stop="90626"/>
              <exon start="89700" stop="89049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCTGGGTTTCTACTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATT : AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG : GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA : GTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA : TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG : CTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCAT : GGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT : CCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAG : GAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAG : GCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCCCAAAG : GTTGAGAAGATATATGGGCCTGGAAACCAGTATGTCACTGCTGCAAAAATGATTCTGCAG : AACAGCGAAGCGATGGTTTCAATTGACATGCCTGCTGGGCCTTCTGAAGTCCTTGTTATAGCTGACAAGCATTCCAGTCCTGTCCATGTGGCAGCAGATTTACTTTCACAG : GCGGAGCATGGGCCAGATAGCCAAGTCGTACTGGTTATTGCTGGGGATGGTGTTGATCTAAATGCCATTCAAGAGGAAATCATGAAGCAATGTCAAGCACTTCCAAGGGGAGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAG : GCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTAATTGAGAATGCAG : GTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCTCTCTATTTGTTTGCATGAAAGAATAATTATTGAGCATTGCAGCTGAGGTCGTTTATTAGTTTTGTTGAGGGGGTTTGAAGCTCTATATTACCTGCACTCTGATTTTTTTCCTTCCAAGTGTTGAATCAAACACACTTGGGAAGAAAAAACAGTAATGTGTAATGGTTACCATGGATGAGCTAGTGCATCTGCTGTATTTGTTTGAAATAAAATCAATCCAGATATCTGAGAAGATGATTATATCAAATCTAATTGTACTGAGTTTGAGGGTTGTATTTTAATTGGTCTTTCACCATGTTTTGTAACAAAAGTTGTATTGGAGCAAACATGTACTAATATTTTGGATTGTATCAAGAGGTTGCTTA</gDNA_template>
            <first_frame> N  L  G  F  Y  F  P  I  V  N  *  T  T  T  T  K  Y  T  T  H  S  A  V  T  P  P  A  T  I  C  L  T  L  H  L  S  P  A  T  T  Y  N   : *  H  *  W  T  A  T  F  Y  H  *  V  G  P  V  A  W  L  V  I  F  G  Q  F  L  H  A  I  L  Y  F  I  G  N  I  L  I  Y  L  Q  :  G  *  F  V  S  Q  L  G  A  Q  *  S  R  I  S  Y  R  S  L  Q  P  L  R  L  T  A  S  R  L  V  L  A  L  I  S  P  P  F  S  A  Q :   F  N  P  L  L  T  M  F  V  I  E  V  M  L  Q  L  K   : I  T  H  R  G  L  T  K  L  Y  W  I  R  *  L  K  M  S  V  S  F  Q  I  P  S :   S  I  H  L  F  A  K  H  L  M  W  H  I  T  T  Y  M  P  F  M  L  L  K  S  L  L  R  K  L  L  R  T  C  M :   G  S  D  V  N  V  S  L  G  A  L  P  L  *  G  F  M  F  L  V  E  L  L  F  Y  L  L  Q  L  *  C  F  Q  F :   Q  H  K  L  L  D  V  K  Q  L  Y  L  Q  L  H  L  L  G  M  A  A  F  A  R :   K  C  F  I  V  P  K  K  R  V  *  P  T  S  L  K  L  E  V  L  R :   Q  F  L  Q  W  P  G  A  L  N  H  A  Q  R :   L  R  R  Y  M  G  L  E  T  S  M  S  L  L  Q  K  *  F  C  R :   T  A  K  R  W  F  Q  L  T  C  L  L  G  L  L  K  S  L  L  *  L  T  S  I  P  V  L  S  M  W  Q  Q  I  Y  F  H  R :   R  S  M  G  Q  I  A  K  S  Y  W  L  L  L  G  M  V  L  I  *  M  P  F  K  R  K  S  *  S  N  V  K  H  F  Q  G  E  N  L  H  L  R  H  *  A  T  A  S  L  C  *  H  G  I  C  W  R :   Q  F  P  S  Q  T  C  M  H  L  S  I  *  *  S  M  W  M  K  L  R  S  G  K  I  *  L  R  M  Q  :  V  L  Y  L  W  E  S  G  H  L  R  V  *  E  I  T  Q  V  E  L  T  M  F  F  Q  L  M  G  M  H  G  C  M  V  G  S  L  W  T  L  S  *  S  T  S  L  C  S  L  *  Q  K  K  G  *  G  I  L  V  L  T  *  R  K  W  P  K  L  R  V  W  M  P  T  R  G  L  *  P  S  D  Y  R  T  *  K  R  D  K  Y  H  T  Q  D  D  L  S  I  C  L  H  E  R  I  I  I  E  H  C  S  *  G  R  L  L  V  L  L  R  G  F  E  A  L  Y  Y  L  H  S  D  F  F  P  S  K  C  *  I  K  H  T  W  E  E  K  T  V  M  C  N  G  Y  H  G  *  A  S  A  S  A  V  F  V  *  N  K  I  N  P  D  I  *  E  D  D  Y  I  K  S  N  C  T  E  F  E  G  C  I  L  I  G  L  S  P  C  F  V  T  K  V  V  L  E  Q  T  C  T  N  I  L  D  C  I  K  R  L  L  </first_frame>
            <second_frame>  T  W  V  S  T  S  Q  *  S  I  E  P  P  P  Q  S  T  Q  L  T  L  L  *  H  R  R  R  R  S  A  *  L  F  I  F  L  R  R  R  R  I  I  :  N  I  D  G  L  Q  H  S  I  I  E  *  V  L  *  L  G  *  *  S  S  G  N  S  Y  T  Q  Y  C  I  L  S  E  I  F  L  S  T  C  R :   V  N  S  *  V  N  *  V  L  N  E  V  V  *  V  I  G  A  Y  N  L  *  G  *  Q  P  Q  G  S  S  S  H  *  F  L  L  H  F  R  H   : S  S  T  H  C  *  R  C  S  *  *  R  *  C  C  S  *  R  :  L  H  I  A  V  *  Q  S  C  T  G  *  D  S  *  R  C  Q  *  A  S  R  S  R   : A  R  F  I  C  S  R  S  I  *  C  G  I  *  Q  H  I  C  L  S  C  C  S  K  A  C  *  E  S  C  *  E  H  A   : W  G  Q  M  *  T  C  R  *  E  H  C  L  C  R  A  L  C  S  W  W  N  C  C  F  T  F  Y  S  S  D  A  F  S   : S  S  T  N  C  W  M  *  N  S  C  T  C  N  S  T  F  S  G  W  Q  H  L  Q   : G  S  A  L  L  C  Q  K  S  G  C  D  P  H  P  *  S  W  R  C  S   : G  N  F  C  N  G  L  G  H  *  I  M  P  K   : G  *  E  D  I  W  A  W  K  P  V  C  H  C  C  K  N  D  S  A   : E  Q  R  S  D  G  F  N  *  H  A  C  W  A  F  *  S  P  C  Y  S  *  Q  A  F  Q  S  C  P  C  G  S  R  F  T  F  T   : G  G  A  W  A  R  *  P  S  R  T  G  Y  C  W  G  W  C  *  S  K  C  H  S  R  G  N  H  E  A  M  S  S  T  S  K  G  R  I  C  T  *  G  T  K  P  Q  L  H  C  V  S  T  G  Y  A  G   : G  N  F  L  L  K  H  V  C  T  *  A  S  D  N  Q  C  G  *  S  *  E  V  G  K  F  N  *  E  C  R :   F  C  I  Y  G  K  V  D  T  *  E  C  R  R  L  R  K  W  N  *  P  C  S  S  N  L  W  V  C  T  D  V  W  W  G  L  F  G  L  F  L  E  V  H  H  C  A  V  F  D  R  R  R  A  E  E  S  W  S  L  R  R  E  N  G  R  S  *  G  S  G  C  P  Q  E  G  C  N  P  Q  T  T  G  H  R  S  E  T  S  I  T  L  K  M  I  S  L  F  V  C  M  K  E  *  L  L  S  I  A  A  E  V  V  Y  *  F  C  *  G  G  L  K  L  Y  I  T  C  T  L  I  F  F  L  P  S  V  E  S  N  T  L  G  K  K  K  Q  *  C  V  M  V  T  M  D  E  L  V  H  L  L  Y  L  F  E  I  K  S  I  Q  I  S  E  K  M  I  I  S  N  L  I  V  L  S  L  R  V  V  F  *  L  V  F  H  H  V  L  *  Q  K  L  Y  W  S  K  H  V  L  I  F  W  I  V  S  R  G  C  L </second_frame>
            <third_frame>   P  G  F  L  L  P  N  S  Q  L  N  H  H  H  K  V  H  N  S  L  C  C  D  T  A  G  D  D  L  L  N  S  S  S  F  S  G  D  D  V  *  L :   T  L  M  D  C  N  I  L  S  L  S  R  S  C  S  L  A  S  N  L  R  A  I  P  T  R  N  T  V  F  Y  R  K  Y  S  Y  L  P  A   : G  L  I  R  K  S  I  R  C  S  M  K  S  Y  K  L  S  E  L  T  T  S  E  V  D  S  L  K  A  R  P  R  I  D  F  S  S  I  F  G  T  :  V  Q  P  I  V  D  D  V  R  N  R  G  D  A  A  V  K  D :   Y  T  S  R  F  D  K  V  V  L  D  K  I  V  E  D  V  S  E  L  P  D  P  E  :  L  D  S  S  V  R  E  A  F  D  V  A  Y  N  N  I  Y  A  F  H  A  A  Q  K  P  V  E  K  V  V  E  N  M  H  :  G  V  R  C  K  R  V  A  R  S  I  A  S  V  G  L  Y  V  P  G  G  T  A  V  L  P  S  T  A  L  M  L  S  V  :  P  A  Q  I  A  G  C  K  T  V  V  L  A  T  P  P  S  R  D  G  S  I  C  K  :  E  V  L  Y  C  A  K  K  A  G  V  T  H  I  L  K  A  G  G  A  Q  :  A  I  S  A  M  A  W  G  T  E  S  C  P  K  :  V  E  K  I  Y  G  P  G  N  Q  Y  V  T  A  A  K  M  I  L  Q  :  N  S  E  A  M  V  S  I  D  M  P  A  G  P  S  E  V  L  V  I  A  D  K  H  S  S  P  V  H  V  A  A  D  L  L  S  Q  :  A  E  H  G  P  D  S  Q  V  V  L  V  I  A  G  D  G  V  D  L  N  A  I  Q  E  E  I  M  K  Q  C  Q  A  L  P  R  G  E  F  A  L  K  A  L  S  H  S  F  T  V  L  A  R  D  M  L  E  :  A  I  S  F  S  N  M  Y  A  P  E  H  L  I  I  N  V  D  E  A  E  K  W  E  N  L  I  E  N  A   : G  S  V  F  M  G  K  W  T  P  E  S  V  G  D  Y  A  S  G  T  N  H  V  L  P  T  Y  G  Y  A  R  M  Y  G  G  V  S  L  D  S  F  L  K  Y  I  T  V  Q  S  L  T  E  E  G  L  R  N  L  G  P  Y  V  E  K  M  A  E  V  E  G  L  D  A  H  K  R  A  V  T  L  R  L  Q  D  I  E  A  R  Q  V  S  H  S  R  *  S  L  Y  L  F  A  *  K  N  N  Y  *  A  L  Q  L  R  S  F  I  S  F  V  E  G  V  *  S  S  I  L  P  A  L  *  F  F  S  F  Q  V  L  N  Q  T  H  L  G  R  K  N  S  N  V  *  W  L  P  W  M  S  *  C  I  C  C  I  C  L  K  *  N  Q  S  R  Y  L  R  R  *  L  Y  Q  I  *  L  Y  *  V  *  G  L  Y  F  N  W  S  F  T  M  F  C  N  K  S  C  I  G  A  N  M  Y  *  Y  F  G  L  Y  Q  E  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95530" stop="95529"/>
                    <exon start="95313" stop="95195"/>
                    <exon start="94990" stop="94869"/>
                    <exon start="94762" stop="94710"/>
                    <exon start="93837" stop="93765"/>
                    <exon start="93661" stop="93560"/>
                    <exon start="93446" stop="93345"/>
                    <exon start="93242" stop="93171"/>
                    <exon start="93093" stop="93031"/>
                    <exon start="92893" stop="92852"/>
                    <exon start="91646" stop="91587"/>
                    <exon start="91447" stop="91337"/>
                    <exon start="91080" stop="90910"/>
                    <exon start="90716" stop="90626"/>
                    <exon start="89700" stop="89417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLMDCNILSLSRSCSLASNLRAIPTRNTVFYRKYSYLPAGLIRKSIRCSMKSYKLSELTTSEVDSLKARPRIDFSSIFGTVQPIVDDVRNRGDAAVKDYTSRFDKVVLDKIVEDVSELPDPELDSSVREAFDVAYNNIYAFHAAQKPVEKVVENMHGVRCKRVARSIASVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSRDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIYGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEVLVIADKHSSPVHVAADLLSQAEHGPDSQVVLVIAGDGVDLNAIQEEIMKQCQALPRGEFALKALSHSFTVLARDMLEAISFSNMYAPEHLIINVDEAEKWENLIENAGSVFMGKWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYITVQSLTEEGLRNLGPYVEKMAEVEGLDAHKRAVTLRLQDIEARQVSHSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95655" e_stop="95529"/>
            <exon e_start="95313" e_stop="95195"/>
            <exon e_start="94990" e_stop="94869"/>
            <exon e_start="93837" e_stop="93765"/>
            <exon e_start="93661" e_stop="93560"/>
            <exon e_start="93446" e_stop="93345"/>
            <exon e_start="93238" e_stop="93171"/>
            <exon e_start="93093" e_stop="93031"/>
            <exon e_start="92893" e_stop="92857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.712" e_score="0.961"/>
          <exon-intron don_prob="0.932" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="0.945"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.921"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="95655" e_stop="95529" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.712">
            <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95313" e_stop="95195" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.973">
            <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="94990" e_stop="94869" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94868" i_stop="93838" i_length="1031"/>
          </intron>
          <exon e_serial="4" e_score="0.945">
            <gDNA_exon_boundary e_start="93837" e_stop="93765" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="93661" e_stop="93560" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="0.961">
            <gDNA_exon_boundary e_start="93446" e_stop="93345" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93344" i_stop="93239" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="93238" e_stop="93171" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="93170" i_stop="93094" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="0.921">
            <gDNA_exon_boundary e_start="93093" e_stop="93031" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="93030" i_stop="92894" i_length="137"/>
          </intron>
          <exon e_serial="9" e_score="0.973">
            <gDNA_exon_boundary e_start="92893" e_stop="92857" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95655" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95615" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93560"/>
              <exon start="93446" stop="93345"/>
              <exon start="93238" stop="93171"/>
              <exon start="93093" stop="93031"/>
              <exon start="92893" stop="92857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCTGGGTTTCTACTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATT : AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG : GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA : TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG : CTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCAT : GGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT : CACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAG : GAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAG : GCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCC</gDNA_template>
            <first_frame> N  L  G  F  Y  F  P  I  V  N  *  T  T  T  T  K  Y  T  T  H  S  A  V  T  P  P  A  T  I  C  L  T  L  H  L  S  P  A  T  T  Y  N   : *  H  *  W  T  A  T  F  Y  H  *  V  G  P  V  A  W  L  V  I  F  G  Q  F  L  H  A  I  L  Y  F  I  G  N  I  L  I  Y  L  Q  :  G  *  F  V  S  Q  L  G  A  Q  *  S  R  I  S  Y  R  S  L  Q  P  L  R  L  T  A  S  R  L  V  L  A  L  I  S  P  P  F  S  A  H :   Y  T  S  R  F  D  K  V  V  L  D  K  I  V  E  D  V  S  E  L  P  D  P  E  :  L  D  S  S  V  R  E  A  F  D  V  A  Y  N  N  I  Y  A  F  H  A  A  Q  K  P  V  E  K  V  V  E  N  M  H  :  G  V  R  C  K  R  V  A  R  S  I  A  S  V  G  L  Y  V  P  G  G  T  A  V  L  P  S  T  A  L  M  L  S  V  :  H  K  L  L  D  V  K  Q  L  Y  L  Q  L  H  L  L  G  M  A  A  F  A  R :   K  C  F  I  V  P  K  K  R  V  *  P  T  S  L  K  L  E  V  L  R :   Q  F  L  Q  W  P  G  A  L  N  H  A </first_frame>
            <second_frame>  T  W  V  S  T  S  Q  *  S  I  E  P  P  P  Q  S  T  Q  L  T  L  L  *  H  R  R  R  R  S  A  *  L  F  I  F  L  R  R  R  R  I  I  :  N  I  D  G  L  Q  H  S  I  I  E  *  V  L  *  L  G  *  *  S  S  G  N  S  Y  T  Q  Y  C  I  L  S  E  I  F  L  S  T  C  R :   V  N  S  *  V  N  *  V  L  N  E  V  V  *  V  I  G  A  Y  N  L  *  G  *  Q  P  Q  G  S  S  S  H  *  F  L  L  H  F  R  H   : I  T  H  R  G  L  T  K  L  Y  W  I  R  *  L  K  M  S  V  S  F  Q  I  P  S :   S  I  H  L  F  A  K  H  L  M  W  H  I  T  T  Y  M  P  F  M  L  L  K  S  L  L  R  K  L  L  R  T  C  M :   G  S  D  V  N  V  S  L  G  A  L  P  L  *  G  F  M  F  L  V  E  L  L  F  Y  L  L  Q  L  *  C  F  Q  F :   T  N  C  W  M  *  N  S  C  T  C  N  S  T  F  S  G  W  Q  H  L  Q   : G  S  A  L  L  C  Q  K  S  G  C  D  P  H  P  *  S  W  R  C  S   : G  N  F  C  N  G  L  G  H  *  I  M   </second_frame>
            <third_frame>   P  G  F  L  L  P  N  S  Q  L  N  H  H  H  K  V  H  N  S  L  C  C  D  T  A  G  D  D  L  L  N  S  S  S  F  S  G  D  D  V  *  L :   T  L  M  D  C  N  I  L  S  L  S  R  S  C  S  L  A  S  N  L  R  A  I  P  T  R  N  T  V  F  Y  R  K  Y  S  Y  L  P  A   : G  L  I  R  K  S  I  R  C  S  M  K  S  Y  K  L  S  E  L  T  T  S  E  V  D  S  L  K  A  R  P  R  I  D  F  S  S  I  F  G  T  :  L  H  I  A  V  *  Q  S  C  T  G  *  D  S  *  R  C  Q  *  A  S  R  S  R   : A  R  F  I  C  S  R  S  I  *  C  G  I  *  Q  H  I  C  L  S  C  C  S  K  A  C  *  E  S  C  *  E  H  A   : W  G  Q  M  *  T  C  R  *  E  H  C  L  C  R  A  L  C  S  W  W  N  C  C  F  T  F  Y  S  S  D  A  F  S   : S  Q  I  A  G  C  K  T  V  V  L  A  T  P  P  S  R  D  G  S  I  C  K  :  E  V  L  Y  C  A  K  K  A  G  V  T  H  I  L  K  A  G  G  A  Q  :  A  I  S  A  M  A  W  G  T  E  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94957" stop="94869"/>
                    <exon start="93837" stop="93765"/>
                    <exon start="93661" stop="93560"/>
                    <exon start="93446" stop="93345"/>
                    <exon start="93238" stop="93171"/>
                    <exon start="93093" stop="93060"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRISYRSLQPLRLTASRLVLALISPPFSAHYTSRFDKVVLDKIVEDVSELPDPELDSSVREAFDVAYNNIYAFHAAQKPVEKVVENMHGVRCKRVARSIASVGLYVPGGTAVLPSTALMLSVHKLLDVKQLYLQLHLLGMAAFARKCFIVPKKRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 93 chains have been computed
$ 
$ memory statistics:
$ 160976 bytes spliced alignments in total
$ 58 spliced alignments have been stored
$ 2775 bytes was the average size of a spliced alignment
$ 21296 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1638 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 111 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:48:29
-->
