<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:36:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604253" ref_strand="+" ref_description="SGN-U604253 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157338569|emb|CAO41920.1| (e_value=3e-16) unnamed; (*ATH) AT4G19610.1 (e_value=2e-16) | Symbol: None | RNA recognition motif (RRM)-containing protein, contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr4:10677675-10681633 FORWARD | Aliases: F24J7.162, F24J7_162; ">
      <seq>cccgtaatgatgaagttatgaccgatacggattatttcaaaagtagagtgaggaaagattggtctgattcagaaagtagtgaagacgatggtagtgataatgaaagtgacaagagcagtgaagatgcaaatgctggtaatatccttgaacctgatgatacagaggaatttttgagtgatggtctcaccagatctaacaatgaggcagcgcttgagcttgttgacccttcatcaagtgttaaggacgaaatagaagaagatctggagagcggacgattatttgttcgtaatcttccatacaccactacggaagaggagctggaagaacactttagagcatttggcaatgtctcacaggttcatattgttgttgacaaagatacaaagcggtccaaaggaattgcatatgttctctatccattaccagaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="5444" stop="4288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5144" g_stop="4838" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4837" i_stop="4712" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4711" g_stop="4588" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="431" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-U604253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5144" e_stop="4838"/>
          <exon e_start="4711" e_stop="4588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTAATGATGAAGTTATGACCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTACGTAATACATCTTCGTTCTGCTTTTTCCTTTTTTTGGGCGATTTAGTCAACTCAATATGTTGCACTGTTTTATGACTTTAATGAACCTAATACATGTTCTTGTTAAACTGATGGGTTTATGATTCAGGGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCAATGTCTCACAGGTTCATATTGTTGTTGACAAAGATACAAAGCGGTCCAAAGGAATTGCATATGTTCTCTATCCATTACCAGAATCT</genome_strand>
        <mrna_strand>CCCGTAATGATGAAGTTATGACCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTAC..............................................................................................................................GGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCAATGTCTCACAGGTTCATATTGTTGTTGACAAAGATACAAAGCGGTCCAAAGGAATTGCATATGTTCTCTATCCATTACCAGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584726" ref_strand="+" ref_description="SGN-U584726 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157338570|emb|CAO41921.1| (e_value=0) unnamed; (*ATH) AT4G20130.1 (e_value=0)  Symbol: None | ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase-related, contains weak similarity to Swiss-Prot:P94026 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast p... ; ">
      <seq>gcccctgggcactctctcactgacagtagagtggataacgtttcaagaacccaaattccatcgatgtatgaatcttctttactgaaattccactaaatttttagctcactctcaagaatggtttcttccaccattctaattcagcaaccgacgaacttcttccaccagccagagcttcaccatcagctatggagaggtctgcagcatggatgtgttgcatcattgcagaaacaacctattttggtatgtaatagtaacaagagaaacagacctttgagagtttcttcaagtgctaatggtgctgttacttcttccactttggaggcctatgattcttctccgtctccttctgcatttcctctttttacacccccttctcaaccccaagatactcccgcttctcagttggaactggcagatcctgatttctacaaaataggatatgttagaagttttcgagcctacgggattgaattcagggagggaccagatgggtatggagtgtttgcttccaaagacgtggaacctctccgtcgagctagggtaataatggaaattcctttagaacttatgttaaccataagcaaaaagcttccttggatgttttttccagatattatacctgtaggacatccagtattcgacattatcaattcaaccaatcccgagacagattcggacttgaggttggcgtgccttcttttatatgcttttgattgcaaggacaacttttggcagctatacggagacttcttgcctagtgctgatgaatgcactagctttcttctagctaccgaggaggatcttttggagttgcaagacgagaagcttgcttctaccatgagagaacagcaaaatcgagcacttgagttttgggagaaaaactggcattctgcagtacctctcaaaattaagcgtcttgctcaggatcctgagagatttatttgggcaatgagtatagcacaatctcgatgcatcagcatgcaaacaagaattggttcactggttcaagaagcaaatatgttggtaccttatgctgacatgatgaatcattcttttcagccaaattgctttttccattggcgcttcaaggaccgcatgctggaggtgatgataaatgcaggacaaaaaattagaaaaggagatgagatgactgttaattacatggctggacagaagaatgacttatttatgcagagatatggtttctcatcgcctgtgaatccttgggatgtcattcatttcaccggagatgccaaaattcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagccatagaagacgggcgtcaagattatggttccatttcagctatgcagaaagctttatctatcacaatagcttttgcaacattttgagggcttttgttgggggtgggtgtaggaagtagctagtaatggtgtataggtggaaaatgacttataccattagttttggaaagatatgaagtgaagaaaaatgagaagttctctatagaaatcatgatgaaaatgaaggatagctttggtggatatgtttgataacaagtagaaaggctcttttgcatgaatgaaatatatgaattctctttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="15291" stop="23781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15590" g_stop="15775" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15776" i_stop="15870" i_length="95">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15871" g_stop="16089" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="405" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16090" i_stop="16982" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16983" g_stop="17120" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="543" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17121" i_stop="17596" i_length="476">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17597" g_stop="17722" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="669" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17723" i_stop="17966" i_length="244">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17967" g_stop="18095" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="798" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18096" i_stop="18636" i_length="541">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18637" g_stop="18726" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="888" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18727" i_stop="18806" i_length="80">
            <donor d_prob="0.338" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18807" g_stop="18957" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="889" r_stop="1039" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18958" i_stop="20666" i_length="1709">
            <donor d_prob="0.681" d_score="1.00"/>
            <acceptor a_prob="0.166" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20667" g_stop="20776" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1040" r_stop="1149" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20777" i_stop="21449" i_length="673">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="21450" g_stop="21521" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1150" r_stop="1221" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="21522" i_stop="22168" i_length="647">
            <donor d_prob="0.367" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="22169" g_stop="22274" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1222" r_stop="1327" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="22275" i_stop="22367" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="22368" g_stop="22568" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1328" r_stop="1528" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="22569" i_stop="22904" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="22905" g_stop="22947" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1529" r_stop="1571" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="22948" i_stop="23051" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="23052" g_stop="23481" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1572" r_stop="2001" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U584726" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2001</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15590" e_stop="15775"/>
          <exon e_start="15871" e_stop="16089"/>
          <exon e_start="16983" e_stop="17120"/>
          <exon e_start="17597" e_stop="17722"/>
          <exon e_start="17967" e_stop="18095"/>
          <exon e_start="18637" e_stop="18726"/>
          <exon e_start="18807" e_stop="18957"/>
          <exon e_start="20667" e_stop="20776"/>
          <exon e_start="21450" e_stop="21521"/>
          <exon e_start="22169" e_stop="22274"/>
          <exon e_start="22368" e_stop="22568"/>
          <exon e_start="22905" e_stop="22947"/>
          <exon e_start="23052" e_stop="23481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAGGTTAGGCCTTCGCCCCCACAAAACCAAATCATTCAAGAATGAATCTTTTTGCTTTTTGATTTTATGGGTGTTTGATTTTTTAATAATTGAACCAGCTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAGGTATTTTCTACTTGCCCCTTCTGTTTCATGTTCTTGAAGTTCAAGTTTAGTTTAATCACATCTTGTTACTTTCTGTGTGATAAGTGCTGTTTTCTTTTGGTAAGCTCACTGTATAAGTGCAATATGCAACACTTTTATGTACTCTTTTTTGTAGTTAGAGTTTTGGCACTGCATACCTTTTCCTCTTCAGTCATGGTTTCTTTTACTTTAATAGAATGCCAAACAAACAATGGACAACAATAAGCACTAGTCTCTCAATAAATTGAAGGAAGTGACAGCCAGGCAGTTGATGTTTGGAAAAGATAGGAGTTACACTTTGAAGATCGATGGAATTGTTCTTATGAATTGGTTTTGTTCCTCATTCAGATTTTCTTCACAAATTATTTGGTTCTAGGTCAGGTCCCATATAAATTTTTGGTGATTACTGTGTTAGAAATACAAAATGTTCTACATCAGGTATAGGGGAATCATATACCTAAAGCATTCTCTACTACTCCTTCACTGCATAAATTTTTCTTTAATATGTCGGAATTTCTAACCAATTAGTAAGTCCGTTCTCACACGTGTGAGTCTGCATTGGTTTCAGATATATAGAATGCCTAACATCTGGTGTTTAGGGGCATCCAAAGGGTTATGATGATTTTGAGCTACTCCCCAATTACCTTAAGATTTTCACTTAGATGCTCATGTTCGTTCTCACGTTCTCATGCATAGATATCCCATTTCTATTGTTACATAGTCAAACTAATGGTTGGAATCCCTCTACTTTCTCGGTCTTACATCCTTTGAGAAGCTGATGAACATATATTTTCCTATTTGATTATTTCAAATTATCCTTATTTTCTCCTGTTCTAATTGTTGATGATGGTGGTATAACATTTTCATATGAACAGTTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTGCTTCCAAAGACGTGGAACCTCTCCGTCGAGCTAGGGTGAGCACTACCTTACAACATGTTTGTATGTACAATGTTTTCCTCCTCCTGATGAAATGTTTAACTATATCAATTACCATCGGAAGCAGTGTCAAATTTACTGCTCCATCAATGTTTTACTATACCAAAAGCTGGACTTCATCCCATCAATTCCACCATGAAATTGGTGGGGGTAGGAAAAAAGGACATGGGAGAATTGTAATACCTTTAAACTACCTTCCTTCTCTCTGAGATAAGTATCTTTAGTTGATTTCCCTCATTTGCTTTTTAACCTTGATAAGTTATATTTGCAGTGGCTAGGCACTACTAATTCTTCTCCTGCTGTGGTGTATTTTATCATGTCCTACATAGTTTTGACTGTCTAATTCATTTGGCATTAGCTTGGCTGTTTGATTGCTCTTTTCGCACTGATTATCTTCACACCTTTTCGTTATCACTAAAATTCAGTGAATCATGAGGTTTTGTTTGTAATGCAGGTAATAATGGAAATTCCTTTAGAACTTATGTTAACCATAAGCAAAAAGCTTCCTTGGATGTTTTTTCCAGATATTATACCTGTAGGACATCCAGTATTCGACATTATCAATTCAACCAATCCCGAGGTAAAAGGATGCATTTTCCTTTTAAATATTTTAATTTTCCTACTAAATATTATTTAATGGAACACATGGGAGAATATTTATCCACATTTTCTTTGATTGGATAAAAATAAAAATTAGACGTCTTACCTTTTCCCTAATGGTACACATGAGAGGATTTGTTTTTATGCTCTAAATTTTTTCATTTTCTTTTTGGTTTTCTAAGATTTCTTGTGACTTTTTAATATTGATTACCTTCTTATGGCAGACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGACTGAATCTTGTTTTTTTCCATGACTGTTGAAGCTCTCTTCTGTGTATTTAAGTCTATTTTGGAGTTACCATTTTGGTTTTCAATCTGAAAATTAATATGTGGTTGAAGCTTCTTCATTTCTGTGCTTTGCATTTTCATTAGTCAGCTGGGCTGGTTTTGATTAGAAAGATTAGTTGCAAACTGAAAAATGGAATGGCTGCATTTGGCATATTCATGGTGGATTAATTTCTAGAATTTCAGTGCTAGAGTAAATAAATAATTGTTTTGTGTTCCTGATGCTCTTCTTAATGCTTTCTGTGGTGTAGGAGGATCTTTTGGAGTTGCAAGACGAGAAGCTTGCTTCTACCATGAGAGAACAGCAAAATCGAGCACTTGAGTTTTGGGAGAAAAACTGGGTACAGACAATCTTGTTAAATCTCTTTCCCCCAGATTCCTGCTCACTAACATTGGCCTTTGACTTTCTTTATTTGTTTAGCATTCTGCAGTACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAGCATGCAAACAAGAATTGGTTCACTGGTTCAAGAAGCAAATATGTTGGTACCTTATGCTGGTGAGCTTCTTTATTGTATTTCTGTCCAAAATTTCAATAGTGAAATCGGGAGCTTTAATTAGTTTATTCACACAATGCAGCACCCTACTTTTAACAGATTGAACTTGGCTGAGATATTTTAAGATAGTCTGAATGGCATCCTTTATTTAATTATTGTTTAGATTGGTCTTGAAGTGATGCTCATGTGTACTTTAAGATGTTAAGTGGATCCAAAAGAGCAGATCCATGACTGCAGTAACAAGTTAGTCACTGAAAAATATGTTCAGTGTTCAGTTTACTGAAACCATGCCCCCAATGAGAATATTGTGTATTCAATTTTTTCCATTTTTTAAAAATAGCTGTGCTTTCTCCCTCTGCAGTCTGCATTATGAAACTCGACGCAGTTACTGTTACAGGTGGAAAATATTTGTCCACCCTAATGATATTTAATACTACTTTCATCACATTTTGGTAAGAAATATATGGTTCATAGAGGGTTTTCTTTAGTCTAATATATACTGTTTATTCTAAGAATTGTAATTATTCATATCTGATGTTAGACAGAGTGTATCAAGTAGTCAACCATTGTAAAACTAACCAGGTCATATTTTATGGGACAGAAGGAGTACCTTACAGAAGAGTAAAATCTGTTTTCCAGAGTTCCCACAAAGTTGTCCTATCAAAGAAAACATATCCCCTCAAAAATAAAATATTATATCAGCTTTTGAATTTCTCTCTACCCAAAACATCAGATTTTCGCCCATCCCTCCCTTTGTTTCAGCCTTGTGTGTGTATCTATGTGTCTCATATTAGAAGAGGCAAAATTAAACATTCTCAAATACTAGTCCTGGCAAAATTAAACATTCTCAAAATTAAACACTTCTCTCTGCATTTCCATCTTCCATTTGTTTCCTTGATTCAAATTCATCATTTTGCTATAGAATACAGCTCAATATCAAGATGGAGGTGCAATGACTTCTTATTTTTTGAGATAAGGAAGGTTTTATTGTTTGGCCGAACAAGTTTCATGAAAATACAAAATGGAAATGTAAAAAGTTGGAATTTCTTTTCCTTCTCCTTCTCCTTCAAAAAAGAAGAAAAAATTTGGAACTTTTCTGGATAATTTCTTGAAAACGAGGAGCATTGCAAAATACTGAAGGATGCTGATAACCGGAAGACAATGGTGATTATGAGAGAAAAATTGGTGACTTTGAATATATATTAACAGTTCCTTTGACTTGACATGATGAGAATTATTTGTTAATGGTTTTGCTATTTTTCTTCTTTTTCCATTAATTGCTAGTGAAGGCCTCAATAACTGTTATTCTCATTGCATCTGTGTCTTTCTAGTCCTAAAGTTTGATGTTGACTGGCGATGTGGTGATGCACATTATGCTTTCTTTTGTAAGTCACATATTTTGAAACTTCCACAAAAGTAATCGATGTATTAAAAGTCTATATTAGCTCTACTAATGCCAGTCAACTTTGTAGAGAAGTTCAGAAAACCTGAAAGCTTTTGAACTAGTATTAAAGAACACAACAACAAGACCTAATACTATGCCTTACCAAGCGTATTATTGTGACCTGTGTTTAAGAAAAAAAACTTAAAGACTTATTAGATAGGGATTCTTCATAATTTCAAGGCAGACTTGCTTGCAATTATCTGTAGCATCTTTAACCAAACTTTGTTTGTGAGGAAGTCCTAACATGTAACTCATCTCATTCTCCAGACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCAGGACAAAAAATTAGAAAAGGAGATGAGGTAAATCCTTTTAGCTTTCTAGATCTACTGGAGGCTTCATTTGAACTGTGTTGTGTGCGCATTAGTCGGAACATCTTATCACATAGGGAATGTAACTGGCTTTGTCAGTGAGTCGGCTTATTTTGGATAATTCATCTGGAGAAGATGGCATTTTGCTTAGTAGGAGAAGATGCATGACTCATGTTAATTTCTGCCCGGAAGGCATGTCTTACATTCAGTGGTGCAGAAAAAATTGTACTCCATTTTCTTGTTGAACATAGGTCGTATATGATATCTAGGGCTATCTTATTTTTAAGAATGCATTTCTTGCATCAGAGTCTTGCTTATTCTAGGCCCAAAAAGACATTTTCAACATCAAAATCTTGCATAATTAAGGATGACCTCGTTTGGTGCCATTGACTTTGTCACCTACTCCTCAGCGTGCAAGGTCTTGCCTTCCACTACAAGGAAAAAAATAAGCTAAATGAAAAGTAGAGTTTAAAATGAAAGAAGAAATAGCATGCAGTATTGCGTGACATACTTTAACTAATGTGCATCTGTCCTTGGTGGTGCTTCTGTCGTCTTCAAATCTTGGGTCTGTGGCTGATCCAACTATATGTGGCCCTGTTTGTCTTTGTTGCTATTGTATAATCTTGATAATATGGCCTAACATGACCTTTATGAATTCTTGCAGATGACTGTTAATTACATGGCTGGACAGAAGAATGACTTATTTATGCAGAGATATGGTTTCTCATCGCCTGTGGTAATGCAGTTATTCTTTACTCTTCCCAGAAAACAGAAGTTGTGTCGGTATTTTTTCTGCTGAAAAGTATGAAATTCCAACTCGAAGTTCCTAGTACTACTGATTTTGTGTAGTAACATTCATTGCTGTAGTCATATTTAAAAGACTGGCAAGAAATCGCTGTAAATGGACATTCAATGTGTACTATCAAGCCTGACAAGTGTAGATGAATTTTGAAGATGAGATAAACCTAAAAGTGAAAGGGAACAGGATTAGAGTGAGGAAAAAATTCTTCCAGTTATTGTCCTTGTCTTGGGTTATTGAGAATAGGTTAATTTGGGCATTTAATCATAGAATTTTGAGTGGGGCTTGAGTTTAATTATTTGTTCAATGATGCTCCATATAGTAGAAGAATTTTGATATTTGTACTGAATCAGAGGAAGAAAGAGAAAGACGGTGTAACATATATTCTTTGTTTACAAATTATTCTAATGAAGCTTATGATTTGATTAGTTGTCAGGGCCATCTATCTCTATGACATGGAAATGAATTTAAATATATGATTGTTGATTTCGTTGAACTTTTGCTTTGAGTATGAGATGTCTTTCTCTGTTCTATTTTTTCTTCTTTTTCTACTGACACTATAATATATATCCTTGATATTGTAGAATCCTTGGGATGTCATTCATTTCACCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACC</genome_strand>
        <mrna_strand>GCCCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG...............................................................................................CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTGCTTCCAAAGACGTGGAACCTCTCCGTCGAGCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAATGGAAATTCCTTTAGAACTTATGTTAACCATAAGCAAAAAGCTTCCTTGGATGTTTTTTCCAGATATTATACCTGTAGGACATCCAGTATTCGACATTATCAATTCAACCAATCCCGAG....................................................................................................................................................................................................................................................ACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATCTTTTGGAGTTGCAAGACGAGAAGCTTGCTTCTACCATGAGAGAACAGCAAAATCGAGCACTTGAGTTTTGGGAGAAAAACTGG................................................................................CATTCTGCAGTACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAGCATGCAAACAAGAATTGGTTCACTGGTTCAAGAAGCAAATATGTTGGTACCTTATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCAGGACAAAAAATTAGAAAAGGAGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGTTAATTACATGGCTGGACAGAAGAATGACTTATTTATGCAGAGATATGGTTTCTCATCGCCTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTTGGGATGTCATTCATTTCACCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAAGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573815" ref_strand="+" ref_description="SGN-U573815 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147787791|emb|CAN67233.1| (e_value=4e-100) hypothetical; (*ATH) AT4G31210.1 (e_value=2e-92) | Symbol: None | DNA topoisomerase family protein, similar to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis} | chr4:15165286-15172693 FORWARD | Aliases: F8F16.30, F8F16_30; (*SWP) sp|Q1RIM1|TOP1_RICBR (e_value=2e-61) DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA; ">
      <seq>gatttagtgcatgcctatcttgcaaggcgtgctcttgattacctgattgggttcaacatttctccacttctgtggaggaaattacctggttgtcaatctgctggtcgggttcagtctgctgccctatcacttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcgtcccatttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagggaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagcaagatgccgcaaacaaattggacttttcatcaacatatacgatgaaacttgcacaaaagctatatgagggaatccagttatctgatggcaagtcaacaggattgataacttacatcagaacagatggcttgcacatttcagatgaagctaccaaggacattcaatcctatatcagtgaaaggtatggacagaattttgcatcaaaagaatggtcgcaaatacttcaagaaagtgaagaatgctcaagaagcccatgaagctattagaaccactgatatccgaaggttacccccaaagcttggccgggtgctggatgatgatgcacttaagctaaacaaacttatatgggtcccgtaccatgggcatgccagaaggaacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="29084" stop="30479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29383" g_stop="30179" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U573815" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29383" e_stop="30179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATC-AAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGTCGGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATAT-GGTCCCGTACCAT-GGCATGCCAGATGGAACCTGC</genome_strand>
        <mrna_strand>GATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAAGAATGGTCGCAAATACTTCAAGAAAGTGAAGAATGCTCAAGAAGCCCATGAAGCTATTAGAACCACTGATATCCGAAGGTTACCCCCAAAGCTTGGCCGGGTGCTGGATGATGATGCACTTAAGCTAAACAAACTTATATGGGTCCCGTACCATGGGCATGCCAGAAGGAACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597895" ref_strand="+" ref_description="SGN-U597895 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147805433|emb|CAN69619.1| (e_value=1e-57) hypothetical; (*ATH) AT4G31210.1 (e_value=5e-51) | Symbol: None | DNA topoisomerase family protein, similar to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis} | chr4:15165286-15172693 FORWARD | Aliases: F8F16.30, F8F16_30; (*SWP) sp|Q4UM42|TOP1_RICFE (e_value=9e-14) DNA topoisomerase 1 OS=Rickettsia felis GN=topA; ">
      <seq>gattgccaagacattatatggtgaagaggatgaagatatctcctctgaagacactaaaagaagtgtggaaccgccaaaattgctgggtgtccatccttcttcaaatgagaagattcttatgaataatggaccatatggatactatgttcagcttggagaagacaagaaaggatacgttcccaagcgggcttcgctttcacaggtgaaggatgtcaattctgttaccttggaagatgccctggagttgcttcgttaccctgtaacattgggaaaccaccccgatgatggccagccggtcgttttaaagcttgcaaagttcggatttacaatcagacataggcgaacaattgctccagtacccaagaatttaaaacccaaagacataaccatggaaaaagctttgaagcttttgctaagtaaagatgtaaggcgatgtggtcgacctaagcgccagccacaggtggaagaggccattgaggcaacataacatcacacttgttagcagattaatgtaccatagaagtcattctttgatgaaggccctcctcaggctgttttattttataggaggaatagtggaatacgaagcttatttacccccacacgggcttggatactctacaagtatgaagagttgtatatcttgagtggcaaagacgattttgttagtagaaattccatttctgtaatctcttcttacaatctttgttatagcattaggcaataacttggccatccaaatggtctgtttaattctcctttttttctgccttgctaagatgtaaagagagtgaaagcattttctttggcagttaaacgcttcaatttgctgaatacatccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="32604" stop="37139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32903" g_stop="33014" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33015" i_stop="33128" i_length="114">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33129" g_stop="33218" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="202" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33219" i_stop="34646" i_length="1428">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34647" g_stop="34712" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="268" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34713" i_stop="34828" i_length="116">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34829" g_stop="34924" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="364" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34925" i_stop="36359" i_length="1435">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36360" g_stop="36839" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="844" r_length="480" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U597895" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32903" e_stop="33014"/>
          <exon e_start="33129" e_stop="33218"/>
          <exon e_start="34647" e_stop="34712"/>
          <exon e_start="34829" e_stop="34924"/>
          <exon e_start="36360" e_stop="36839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCCAAGACATTATATGGTGAAGAGGATGAAGATATCTCCTCTGAAGACACTAAAAGAAGTGTAGAACCGCCAAAATTGCTGGGTGTCCATCCTTCTTCAAATGAGAAGGTTTCCACATCAAAACCCTTTATATATCAGTTGATTGATTTTACTAGTTGTTTGTTACCTATTAATTAGTTGTTTGTTCTCGGAGTTAAACACCTTTATGCCCTTTCTCTTTAGATTCTTATGAAGAATGGTCCATATGGATACTATGTTCAGCTTGGAGAAGACAAGAAAGGATACGTTCCCAAGCGGGCTTCGCTTTCACAGGTATTTTGATAAGCACTTTCTTGAACATGGTAGTGAGTTCTTTCCCATGTATAAATACCAGTTTCCGCTTTTATATTATTGCTAGTATATGGGCACGTGCGTTGCACGTTTACTTCATAACGATGAATAACATGATAAACGATTTAAGTTTTAAAAAAATGTTTGTAGTGTATAGTTAACTTGAAGAATTTTTTTTTGTATTTATGTCCTCCCTTTATTATATAATTTTGATATAGAAATTTTATATTTGTTTTAAAAGACAAAATAAAGTAGCAAAAACAAACATGTAGGCACACTATCTTATGATGAATTTTCTTAAAATGTCTTTTTTTTCTCATAAAAATGTTGAAATTAAATTAATAGTTGTACATTTCAAGAAGATAAAATGTTTGACATTAATTAGTAAAAGATGAAATTCTCCTTCTCTTTAAGTAGAATACAATTAAGTAATTCAAATTTATAAATAAAAAACTTATTAGAAGAAAATAATTAAGATTTTAAGTGCAATGATTGGTATTTAAATTATGTAATTATACAAATAAAATATTAATATTTAATTAAATAAATCAGATTTTAATTTAATGGAGAGCCAAAATGACAATATCAGTATTCTTACAATTAAAAGTTAAAATATATGTTACGTTTTTTTGTTAAAAAATTAATAGGAGCAATATTTGGTCAAAGGATAAAAGATCTTCTAACTTCTTAAGCATTTTGGTGTATCATTTTTTTGATTTTGGGATTTGGATCTCATGATAATTTTAATGAAAATTGTCTAAAAACTATATATTCTATTCACAAGCACATGTAAGAATGATTCTTTACAAATATTTAAAATTTTGCAAAAATGTAATTATTAATAATTTGAAATTAGAATATCTTGTAGGCATTAACTGTTTTGCATGCCTTTTACACTATTTTTATGATTGTATTTGTCTCATTTTATAAAGCAAAAAATACACATATATCTATTTAAAGGGTAAATAATTTCAAGAAAATAAATTAAATTAGATATTTTAATTAAGAATTATTCTAAAGAAGTGCATAAGTCATTAACATTTTTATTAAAATAATATAACTTAATATTTAAATTAAATAGTAAATATTTTTATAACATTTTAATTTATAATAAGGGTAAAACCGTAATTTAACTTTTAATTTTTTTGGTTCCCTCTTATAATAATAATATATGATATATGATATATGATAATAAAAAAAATACTGCAATTCCTCCAAAGTCACTGAGCGGAGCCTTCTCTTTCCCATTGAACGGAATTACCTTTTGCTTTTGTTTGATTTGATATAATTGCGCCTGGAGTATAATCTTTACAAATCACTATACTTAATGCCCTCCTCAAAGAAAAGTTCAATGAGATAAGTTTATCTTGGTAGATCGTAAGTGATGTAAATGCATTTTTCATGATCTAGGTGAAGGATGTCAATTCTGTTACCTTGGAAGATGCCCTGGAGTTGCTTCGTTACCCTGTAACATTGGTATGTTTGCAATGTGTACTTCCTTTTGTGTATTTAATATTTCTATCATCAGTTTTAAATATCTCTATCACTGGTTATGAGTATGCATACAAAAGATGAATGGGTCATGTCTATAGGGAAACCACCCCGATGATGGCCAGCCGGTCGTTTTAAAGCTTGCAAAGTTCGGATTTACAATCAGACATAGGCGAACAATTGCTCCAGTACCCAAGGTTTGGTGCAATCTCTCTGTGCTAAAATTGTTGTTTATTTTTTCCAAATATTTTGTCTTGATATGCTAGCTTCTGCTGAATAATATTAGAAGGTATTTATACGAGAAAATTATCTTGGAATCAATAAAGATCTGATAAAAAGTTATGACATAATGACAGCAGGACATAGGCTCCTGCAGTCTTGATGGATGATAAAGTGAAGTTTGTGGTTGTCAAATTTCCAAAGTGTTCAAATTGTCCCTTTACTCTTGGTGTGTGGTTTGGCATCCTGTTTGTGCCTTTGTGGTTGTATAAATTAATGATGCAGGAGACTGAAGCAGGAAAAAACATCTATCAAGGATGAATACTCTAGTGTTATCTCCCAATTCATGTTAAAAGACTTCTAGACTTTGTGCTTTAATCTAGTGAGAAGTAATAGAGTTTGTAAAAGTGTCTCTGTAATGCCTAGAATTCCAGTATCATTTGTTTCTTACATCAGATACTTTGTGCTTAATCATTTTTTAATGACGGTGGTGTCTGGGCAGCCACACAAACTGCTGGGAATGATGGGAAGAAATCACTTTGTGTTTTGGCCTTCACCGAGATTTGAACCTGAGATCTCATGGTTCTCCCACTAGGCGACACACTTAGTGCTTTGTGCTTAATATTTTTAGGGACCACAATCAATTGTTCATAATTGTCTATTGGGAATAGTTGCAAATGTAAAGACTCGTTCAAGCATTTATTAGTATGACTTCATATTCCTGTATATCAGCCTAATGCCAATGGCTGATGAGCCTCTGCCCTCTCATATTCCACACGTCCTGCCTCCGCAAAATTGAAGACCTTAAGAACTTTATATCATTGTAATTTGTATGACCTCACGATATCCACTGCTTGATACCACATTATATTTGGTTAATTTGTTTTTGTTAGAACAAAACGCGCCTAACTGAAGAGACAGCATATTTTGCTATGCTTTCTGCTAGTATCTTTCTTTAGATTTTTCGAATTTGTCATTTCTCATCAATAATTTTACTGAAAGGAAATTCATCTTAAGGTTCAATTTTATATATTTTTATTCTGTTACATTGAGATGAAGCTGCTACTGTTGCTGCTTGCTAATTACAAATGTTTCTGCAACTACTGTTAACTCTATACCAATGAATGTCAATGCTGGTCAGTATGCTTTCTTACATGTTAGTTATTGCTTATTATTGATACAATACAATAGATGTTACGTGAAGTGTCAATTTGCGAATAATTTAAAAGTGAATAAGGTCTGTATAAATCTCAACTAGATCAATGCTTTGAAGTAGATTAATGGTTATGGGTTTCTGTTTATTTCTTTTTACCATGTGAAGTTCTTGGTGCTGGGATAGCTGATAGATTTTGGTATTTGCTGATAGAAATTGTAAATGGAAATTAATATTGCCTATACTGATTTTGGTGACAGAATTTAAAACCCAAAGACATAACCATGGAAAAAGCTTTGAAGCTTTTGCTAAGTAAAGATGTAAGGCGATGTGGTCGACCTAAGCGCCAGCCACAGGTGGAAGAGGCCATTGAGGCAACATAACATCACACTTGTTAGCAGATTAATGTACCATAGAAGTCATTCTTTGATGAAGGCCCTCCTCAGGCTGTTTTATTTTATAGGAGGAATAGTGGAATACGAAGCTTATTTACCCCCACACGGGCTTGGATACTCTACAAGTATGAAGAGTTGTATATCTTGAGTGGCAAAGACGATTTTGTTAGTAGAAATTCCATTTCTGTAATCTCTTCTTACAATCTTTGTTATAGCATTAGGCAATAACTTGGCCATCCAAATGGTCTGTTTAATTCTCCTTTTTTTCTGCCTTGCTAAGATGTAAAGAGAGTGAAGGCATTTTCATTGGCAGTTAAACGCTTCAATTTGCTGAATACATCCTTT</genome_strand>
        <mrna_strand>GATTGCCAAGACATTATATGGTGAAGAGGATGAAGATATCTCCTCTGAAGACACTAAAAGAAGTGTGGAACCGCCAAAATTGCTGGGTGTCCATCCTTCTTCAAATGAGAAG..................................................................................................................ATTCTTATGAATAATGGACCATATGGATACTATGTTCAGCTTGGAGAAGACAAGAAAGGATACGTTCCCAAGCGGGCTTCGCTTTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGATGTCAATTCTGTTACCTTGGAAGATGCCCTGGAGTTGCTTCGTTACCCTGTAACATTG....................................................................................................................GGAAACCACCCCGATGATGGCCAGCCGGTCGTTTTAAAGCTTGCAAAGTTCGGATTTACAATCAGACATAGGCGAACAATTGCTCCAGTACCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAACCCAAAGACATAACCATGGAAAAAGCTTTGAAGCTTTTGCTAAGTAAAGATGTAAGGCGATGTGGTCGACCTAAGCGCCAGCCACAGGTGGAAGAGGCCATTGAGGCAACATAACATCACACTTGTTAGCAGATTAATGTACCATAGAAGTCATTCTTTGATGAAGGCCCTCCTCAGGCTGTTTTATTTTATAGGAGGAATAGTGGAATACGAAGCTTATTTACCCCCACACGGGCTTGGATACTCTACAAGTATGAAGAGTTGTATATCTTGAGTGGCAAAGACGATTTTGTTAGTAGAAATTCCATTTCTGTAATCTCTTCTTACAATCTTTGTTATAGCATTAGGCAATAACTTGGCCATCCAAATGGTCTGTTTAATTCTCCTTTTTTTCTGCCTTGCTAAGATGTAAAGAGAGTGAAAGCATTTTCTTTGGCAGTTAAACGCTTCAATTTGCTGAATACATCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582440" ref_strand="+" ref_description="SGN-U582440 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157338572|emb|CAO41923.1| (e_value=3e-61) unnamed; (*ATH) AT3G57430.1 (e_value=1e-53) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:21266612-21269457 REVERSE | Aliases: T8H10.30; (*SWP) sp|Q9C6T2|PPR68_ARATH (e_value=3e-21) Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11; ">
      <seq>gtacactctctgcttcccctgtttctgttcctcttcaacaacaatccaattcatttacccaaaatccaccaagaaaactactttcaacttcatcacccacaagtacactcattttcaagaaatttcaacaagaacacacctcagaaacaccctcttcagcttcatggatcgatactcttcggtctcaagtacgcttaaattgcttcaaagaagcaatctttacatatatacagatgacttctgaaggtgtaaggcctgataattttgttttccctgcagttctgaaagctgctactggccttcaggacttgaatcttggaaaacagatatatggggctgttgttaaatttgggtatgatacgatatcagtcaccgtgtctaattctgttatccatttacttgggaggtgtggtgggagtattgatgatgtttataaactgtttgatagaattactcagagagatcaagtttcttggaattctttgataaatgctctttgtaaatttgagaagtgggagttagcattggaggcttttaggttaatggggtttgatggatttgaggctagttcgtttacgttggtgagcattgcgcttgcttgtagtaatttgcctaggactgatgggttgaggcttggcaagcaagtacatgggtatagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="41581" stop="40319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41281" g_stop="40619" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-U582440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41281" e_stop="40619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACACTCTCTGCTTCCCCTGTTTCTGTTCCTCTTCAACAACAATCCAATTCATTTACCCAAAATCCACCAAGAAAACTACTTTCAACTTCATCACCCACAAGTACACTCATTTTCAAGAAATTTCAACAAGAACACACCTCAGAAACACCCTCTTCAGCTTCATGGATCGATACTCTTCGGTCTCAAGTACGCTTAAATTGCTTCAAAGAAGCAATCTTTACATATATACAGATGACTTCTGAAGGTGTAAGGCCTGATAATTTTGTTTTCCCTGCAGTTCTGAAAGCTGCTACTGGCCTTCAGGACTTGAATCTTGGAAAACAGATATATGGGGCTGTTGTTAAATTTGGGTATGATACGATATCAGTCACCGTGTCTAATTCTGTTATCCATTTACTTGGGAGGTGTGGTGGGAGTATTGATGATGTTTATAAACTGTTTGATAGAATTACTCAGAGAGATCAAGTTTCTTGGAATTCTTTGATAAATGCTCTTTGTAAATTTGAGAAGTGGGAGTTAGCATTGGAGGCTTTTAGGTTAATGGGGTTTGATGGATTTGAGGCTAGTTCGTTTACGTTGGTGAGCATTGCGCTTGCTTGTAGTAATTTGCCTAGGACTGATGGGTTGAGGCTTGGCAAGCAAGTACATGGGTATAGTTTGA</genome_strand>
        <mrna_strand>GTACACTCTCTGCTTCCCCTGTTTCTGTTCCTCTTCAACAACAATCCAATTCATTTACCCAAAATCCACCAAGAAAACTACTTTCAACTTCATCACCCACAAGTACACTCATTTTCAAGAAATTTCAACAAGAACACACCTCAGAAACACCCTCTTCAGCTTCATGGATCGATACTCTTCGGTCTCAAGTACGCTTAAATTGCTTCAAAGAAGCAATCTTTACATATATACAGATGACTTCTGAAGGTGTAAGGCCTGATAATTTTGTTTTCCCTGCAGTTCTGAAAGCTGCTACTGGCCTTCAGGACTTGAATCTTGGAAAACAGATATATGGGGCTGTTGTTAAATTTGGGTATGATACGATATCAGTCACCGTGTCTAATTCTGTTATCCATTTACTTGGGAGGTGTGGTGGGAGTATTGATGATGTTTATAAACTGTTTGATAGAATTACTCAGAGAGATCAAGTTTCTTGGAATTCTTTGATAAATGCTCTTTGTAAATTTGAGAAGTGGGAGTTAGCATTGGAGGCTTTTAGGTTAATGGGGTTTGATGGATTTGAGGCTAGTTCGTTTACGTTGGTGAGCATTGCGCTTGCTTGTAGTAATTTGCCTAGGACTGATGGGTTGAGGCTTGGCAAGCAAGTACATGGGTATAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587042" ref_strand="+" ref_description="SGN-U587042 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157338573|emb|CAO41924.1| (e_value=4e-29) unnamed; (*ATH) AT5G44720.2 (e_value=3e-27)  Symbol: None | molybdenum cofactor sulfurase family protein, weak similarity to molybdenum cofactor sulfurase (LOS5/ABA3) (Arabidopsis thaliana) GI:15407262; contains Pfam profiles PF03476: MOSC N-terminal beta barrel domain, PF03473: MOSC domain | ... ; ">
      <seq>aaagtgtgtgatttgatgcttctcaatccaaatatggttcccattataaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaagggggggggtggatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44887" stop="46774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45186" g_stop="45393" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="358" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U587042" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45186" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGTGTGATTTGATGCTTCTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG</genome_strand>
        <mrna_strand>AAAGTGTGTGATTTGATGCTTCTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAGGGGGGGGGTGGATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575871" ref_strand="+" ref_description="SGN-U575871 Tomato 200607#2 [53 ESTs aligned] (*GB) gi|157338573|emb|CAO41924.1| (e_value=4e-124) unnamed; (*ATH) AT1G30910.1 (e_value=5e-112)  Symbol: None | molybdenum cofactor sulfurase family protein, weak similarity to molybdenum cofactor sulfurase (LOS5/ABA3) (Arabidopsis thaliana) GI:15407262; contains Pfam profiles PF03476: MOSC N-terminal beta barrel domain, PF03473: MOSC domain | ... ; (*SWP) sp|Q1LZH1|MOSC2_BOVIN (e_value=6e-35) MOSC domain-containing protein 2, mitochondrial OS=Bos taurus GN=MOSC2; ">
      <seq>aancccaggttttcccatcccgnngntnaaaannggcggccngggattgtnattcgcaccccctanagggngaatgtgtgtgatttgatgcttctcaatccaaatatggttcccattataaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatggaaaaggcaagatagtcaaggttggggatcctgtttatgtccataaggttgttccttctagtgctgaggctccagcttgaactctagttgttctatcactgtaatgtaaaatgtgcatctgaataaggtgatcccaaaagataagaatactaatgtaaggaaaaatggtcttccaggccaatgctaaataaatctacataaacgtttcgcctgtatttcttttcatcattgtgaattgcatcaagcctggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44887" stop="49037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45190" g_stop="45393" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="280" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="430" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="607" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="696" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="761" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="864" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="975" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48439" g_stop="48737" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1274" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U575871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1198</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45190" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGATTTGATGCTTCTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGTATTTCTTTTCATCATTGTGAATTGCATCAAGCCTGGCTT</genome_strand>
        <mrna_strand>TGTGTGATTTGATGCTTCTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGTATTTCTTTTCATCATTGTGAATTGCATCAAGCCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587047" ref_strand="+" ref_description="SGN-U587047 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|112031429|gb|ABH88162.1| (e_value=3e-28) molybdenum; (*ATH) AT1G30910.1 (e_value=3e-26)  Symbol: None | molybdenum cofactor sulfurase family protein, weak similarity to molybdenum cofactor sulfurase (LOS5/ABA3) (Arabidopsis thaliana) GI:15407262; contains Pfam profiles PF03476: MOSC N-terminal beta barrel domain, PF03473: MOSC domain | ... ; ">
      <seq>gaggatttgattcttctcaatcctaatatggttcccattatgaaaatttttgggaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataagagcgccagcagcagctcaagttaaatcaatctttgtatatccaattaaatcatgccgcggaatttctgtttctaaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcataccctatccatgcctgttctaaacgctggcaacctaataatgactcttatctagatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44891" stop="46774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45191" g_stop="45393" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="352" r_length="150" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U587047" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45191" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGATTTGATGCTTCTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG</genome_strand>
        <mrna_strand>GAG-GATTTGATTCTTCTCAATCCTAATATGGTTCCCATTATGAAAATTTTTGGGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAAGAGCGCCAGCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGCGGAATTTCTGTTTCTAAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATACCCTATCCATGCCTGTTCTAAACGCTGGCAACCTAATAATGACTCTTATCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587043" ref_strand="-" ref_description="SGN-U587043 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157338573|emb|CAO41924.1| (e_value=1e-47) unnamed; (*ATH) AT1G30910.1 (e_value=6e-43)  Symbol: None | molybdenum cofactor sulfurase family protein, weak similarity to molybdenum cofactor sulfurase (LOS5/ABA3) (Arabidopsis thaliana) GI:15407262; contains Pfam profiles PF03476: MOSC N-terminal beta barrel domain, PF03473: MOSC domain | ... ; ">
      <seq>tgctatcccaggctagtaaatcatcatttaaattcaacctaaacatccatagaacaagagcttaggctagattttcttggtccatgttctgcagggatcgttgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaagtatactcttgtcctacttatataatttgtttatgattggttgtttactttctttcctttttctgtacaaactgttagtactttagattaactcagttaaattttttgacaaagtcttctttcacagtgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccgaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacagcagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatggaaaaggcaagatagtcaaggtgggggatcctgtttatgtccataaggttgttccttctagtgctgaggctccagcttgaactctagttgttctatcactgtaatgtaaaatgtgcatctgaataaggtgatcccaaaagataagaatactaatgtaaggaaaaatggtcttccaggccactgctaaataaatctacataaacgtttcgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="47128" stop="48997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47428" g_stop="47809" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="500" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48439" g_stop="48697" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="759" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U587043" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587043" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47428" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTC--GTCCTACTTGTATAATTTGTTTATGATT-G--G-TTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAA-TTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTG</genome_strand>
        <mrna_strand>TGCTATCCCAGGCTAGTAAATCATCATTTAAATTCAACCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGTTGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCTTGTCCTACTTATATAATTTGTTTATGATTGGTTGTTTACTTTCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTTGACAAAGTCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCGAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAGCAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTGGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCACTGCTAAATAAATCTACATAAACGTTTCGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580294" ref_strand="+" ref_description="SGN-U580294 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|15235288|ref|NP_193742.1| (e_value=6e-15) pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]; (*ATH) AT4G20090.1 (e_value=4e-17) | Symbol: EMB1025 | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr4:10868410-10870392 REVERSE | Aliases: F18F4.190, F18F4_190, EMB1025, EMBRYO DEFECTIVE 1025; ">
      <seq>ctctctctgaactatctaagtcgagaaaaagagagccccaccccttccgcttccgtttttctgccctactcccgctaccctcctcgctgttttcatcttcctcatcagcgtctctcagagacctccttcattttgttgagcctaaaagattcttatatttaaggtttaaaccctgcatagatgatcattatcagaagtttttgtttttcttcatgagaatctgagttgaaaaggcatgctcttttactccttccgtaccaaacagttcacttcaaagctaatcccatgtaagtctttctctaacttcaccattaaccgtgtattctcagctctatctaacccttctcatactgaccaagaacctgaaatagactattcaatttctactttgaaaactgaaatgggactacccaaattgagttctcgtggaactgaaatggaaatacccatatctgataactcaatgaagattgccccaatacctaagtttaattcttgtgtaactgaagtagaagaacccctttctgataaatcatttaaagttaccctaaaacccaacttgggttcttgtgaaactgaagtggaagtaccaatttcagacaagctatttaaagaggctccaaagttgggttctttcaaattgggtgattctacattctattctcttattgagaagtatgctaattccgaggactttacgtctttggagnanggnttttggtagaatgaagtgtgaaaaaagagtctttattgagaanagttttatcttantgtttagagctnatggaaaagcccgtttgnctgaaaagctgnngagttgntngaaana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="61096" stop="62517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61388" g_stop="62217" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U580294" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61388" e_stop="62217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGAAATTAACTATCTAAGTCGAGAAAAAGAGAGCCCCACCCCTTCCGCTTCCGTTTTTCTGCCCTACTCCCGCTACCCTCCTCGCTGTTTTCATCTTCCTCATCAGCGTCTCTCAGAGACCTCCTTCATTTTGTTGAGCCTAAAAGATTCTTATATTTAAGGTTTAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTTGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTTAAAGTTACCCTAAAACCCAACTTGGGTTCTTGTGAAACTGAAGTGGAAGTACCAATTTCAGACAAGCTATTTAAAGAGGCTCCAAAGTTGGGTTCTTTCAAATTGGGTGATTCTACATTCTATTCTCTTATTGAGAAGTATGCTAATTCCGAGGACTTTACGTCTTTGGAG-AAGGTTTTTGGTAGAATGAAGTGTGAAAAAAGAGTCTTTATTGAGAAGAGTTTTATCTTAGTGTTTAGAGCTTATGGAAAAGCCCGTTTGCCTGAAAAAGCTGTTGAGTTGTTTGAAAGA</genome_strand>
        <mrna_strand>CTCT-CTCTGAACTATCTAAGTCGAGAAAAAGAGAGCCCCACCCCTTCCGCTTCCGTTTTTCTGCCCTACTCCCGCTACCCTCCTCGCTGTTTTCATCTTCCTCATCAGCGTCTCTCAGAGACCTCCTTCATTTTGTTGAGCCTAAAAGATTCTTATATTTAAGGTTTAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTCGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTTAAAGTTACCCTAAAACCCAACTTGGGTTCTTGTGAAACTGAAGTGGAAGTACCAATTTCAGACAAGCTATTTAAAGAGGCTCCAAAGTTGGGTTCTTTCAAATTGGGTGATTCTACATTCTATTCTCTTATTGAGAAGTATGCTAATTCCGAGGACTTTACGTCTTTGGAGNANGGNTTTTGGTAGAATGAAGTGTGAAAAAAGAGTCTTTATTGAGAANAGTTTTATCTTANTGTTTAGAGCTNATGGAAAAGCCCGTTTGNCTG-AAAAGCTGNNGAGTTGNTNGAAANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585028" ref_strand="-" ref_description="SGN-U585028 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157338577|emb|CAO41928.1| (e_value=5e-41) unnamed; (*ATH) AT3G47630.2 (e_value=5e-37) | Symbol: None | similar to Hypothetical protein CBG04116 [Caenorhabditis briggsae] (GB:CAE60498.1) | chr3:17574031-17576414 REVERSE | Aliases: None; ">
      <seq>tacatgaatttcttcattgcatatgatcccaggtgacaaaaatgtacaaggacagtcccatttattgagggaaatgtataagccatttctggaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttccaccttggtttcttctcttccttcatcaatcagaagtgagatggccatgaaacttggagaaaagagaattctggatgactctggtagagttagacaacaaatagtgattggttcaaaagaacaggctgctgagtgcatgcagaggctagttagacgaaaggttatgttttctagcacaaggcaggctgttgcaggtttattgactgctggtgctgttcatggagtcagatatgtagcaaacaagatgcgcaaggcttggaaatcttgggtgtaattgtttcctgtttttgggtgacatcacgtcttttaactggttcagacatggggatatagccacaaccacagttacacctaatgacatgcggttcaacgatggagttcttagcatggatagagtttgccgactctcctgctgctttttcaaaataagacaaatagaatttgaggggggaaataaccaacaacccatcaaaaaatttcttctgaaagttttctgttcacttgtattcttttcttttatttatttcaaaggtgggaagagttcttcagggaaggtcgagctgttgtatgtttagaacatcctggtgaaaagaagttaatcaatgtttctaaacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="71699" stop="69333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71399" g_stop="71239" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70589" g_stop="70484" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="266" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70483" i_stop="70168" i_length="316">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70167" g_stop="69633" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="801" r_length="535" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-U585028" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585028" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71399" e_stop="71239"/>
          <exon e_start="70589" e_stop="70484"/>
          <exon e_start="70167" e_stop="69633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTGGTACGTAAATCAACTGCAAAAAGAGTGAATTTTCTGGAAAGAATCTTAAAATTTCCTGTTCTTTCAGATTTTTTCCCTTGTTAGTAGTTCCTGTTGAATTGTGTCTAACTTCCTCATTAGTGAACATACACTTATATTTTAGTTATTTCACGTCTGTAACTCTTACGCTTAGATCCTGATACCATGTTGGATTGTGTGCTTGTCTCATCTCTAGAGAAAAGTTCTATTTAGTTATATTACTTGTTATGATAAGCTCTTCTAATGTTCCCTCCTCAGCTTAATCAAATCATTTCACCTATGCCATATTTTCTTGTAGGTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGG</genome_strand>
        <mrna_strand>TACATGAATTTCTTCATTGCATATGATCCCAGGTG-ACAAAAATGTACAAGGACAGTCCCATTTATTGAGGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG............................................................................................................................................................................................................................................................................................................................GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACGATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585029" ref_strand="+" ref_description="SGN-U585029 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157338577|emb|CAO41928.1| (e_value=2e-69) unnamed; (*ATH) AT3G47630.2 (e_value=2e-69) | Symbol: None | similar to Hypothetical protein CBG04116 [Caenorhabditis briggsae] (GB:CAE60498.1) | chr3:17574031-17576414 REVERSE | Aliases: None; (*SWP) sp|Q96BW9|MMP37_HUMAN (e_value=3e-31) MMP37-like protein, mitochondrial OS=Homo sapiens GN=C3orf31; ">
      <seq>aaccttaaacccttgaaaaccccaggaacttaattgaaaagatttgccaaattgatagctaaattttgttaattagggttcaaattgcacatgtgtactgatcagtaagtggtaaccaatgcattatcttaataatttcaagcgtgtcttccagatgtttgataaaattcctgtgagaatacttcaagattttgatccaattgaacatatgtttgtatgtaccatattacatgatttttgttttgttttcatatgttaatgtagaaatggtgggacaggataaagctgagctagggggtttgcttgaaattctacccccggtagagttttgctgtatatatggttctaaacttcatcccaacaacaaagatgaggttttttctacttccttctttcggataatgaattccactcatggttttatttgatcaagaagttctataaaatactgcaatagtacattgctaacaaattcattgctagacatctatgacagattacattattggagtatctgatcctcgacaatggcattctgagaatctaaaattgaacaaggatcactatgcttcgtgtctcattcgccttggtggagcaaggatgataactgatattgcaaatgacattggtgttggcgcacacttcaacccatttgtgtcttgcaacaacaagatgttcaagtatggagttgtacggatgcatgacttgattcaagacatattgggatgggagaggttttatctcagcggtcgtttgcagaaaccagtgaacattcttacggataacttggatataaaaagcgtgaacagcgtgaatctgaaagctgcaacttctgctgctcttctccttttgccatctaaattcacggaggaagatttatatgccaaaatctgtagcctctcatatacaggtgacttgcgtatgctttttgcagaggacaaaaataaggtagatttgacatttgagtgggtttaaattttaaaattttgtggccctgactgtaccacatggaagtatcaatctacaagtaagtttatagtgtaattgggtagtttctcaattttatagttttatattacttccagcggatcaatgaatatcagttaatttgcatctcatatctacaaaatatcctttttggactagaatttgaatctcaacttttagcatagtatctcatagtgcattggcaactttcatgccacattaattgattgaattgattcttccattccgtgtacatgaatttcttcattgcatattgatccaggtgaacaaaattgtacaaggacagttccatttatttgaggaaatgtataagccatttctggaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="74682" stop="70265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74382" g_stop="73843" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73842" i_stop="73772" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.516" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73771" g_stop="73709" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="603" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73708" i_stop="73591" i_length="118">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73590" g_stop="73522" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="672" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73521" i_stop="73465" i_length="57">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73464" g_stop="73372" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="765" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73371" i_stop="71960" i_length="1412">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71959" g_stop="71855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="870" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71854" i_stop="71768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71767" g_stop="71239" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="1399" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70589" g_stop="70565" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1400" r_stop="1424" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-U585029" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74382" e_stop="73843"/>
          <exon e_start="73771" e_stop="73709"/>
          <exon e_start="73590" e_stop="73522"/>
          <exon e_start="73464" e_stop="73372"/>
          <exon e_start="71959" e_stop="71855"/>
          <exon e_start="71767" e_stop="71239"/>
          <exon e_start="70589" e_stop="70565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAGGTAATTGCTGAATTTTAAGCAACTCTCTGTCCATCTTTGTTTTCAAAATCTAACGTCTTTCTACAATCCAGAATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATGGTGCTATTTCCTTTCTTGAATTAACTTTGATTTCCCTCATTTCTTTACTACTTTATATATGTTTTTAGTCTTACATTTCAACTCTAACTAAAGAACAATTTACTGTGCATTGTGTCAGATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAGGTAAATGAAGATGCACTTTCTTTTAACACATCAGTAATTTAAGATTAACTTTTACAGATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCAGTATGGCTTGTTTTGAACTGCTATTTAAATAACATATTTTACAAAGGACTTCGGTTACAGTATTAGTTACATTGATGTAAGGACTTCCGAATGAATTTAAGTCAGTTAGTATATTTTGCAATCCTTTTGTGCCTCTTAGTCATTATTGTGGTACTTCTATGTCACATGAATTTAATTTCTGTTGTGATGAATTTAATAATATTGATGGTATCAGGAATAGTTCTTTATTGATGACTGACTTTCCTGAGTTGCTATAAATACCTATCAGTCAAAGAAGCATGAAATCATCATTTAAGAAGTAACTTGCTACATGATGTTAGCTTACTCTCATTTGTATAACAAAAGGGAGAAAACTTGGTAATGTTTTTATTCGCATTAAATGTGGTCAAATAAGCTTACATTGGTTAGGATAATATCCACGAGCTCTTGTATGTTCTCTTAGCCGTAGGATCTCACTTTGGTGGTACCTAGAGACATAAGAATAAAGAGTTATCATAATAACGCTGTATTATGATCCTATTATAATAACGTTGTATTATAATCCTATCATAATAACGTTGTATTATAATCCTATCTAATTTTCCTCTTCCCCAAAAGAAATCCTATCTAATATTTCCTCCCAAAAAAAATATAATCGATTCTGGCTTGAAACTATATGTATATCTCAGCCTGCATTTTCTTACAAAACAAATTAGCATGTGCTTTTGATATTTGATGGCACACCACTGCTAGCTTTTAAGCTCTCTCTTCTATTAACCTGAAAATGAACATGAAAAGTCAAGTGAGTGTGTATGGTAACTTGTTGTACTCTCAAAGATATTCCTAACAGAAGCAGTGCACTCAAACATTTCTTGCGAGTGTTAAAAAGAACTTCAGTTGGAAATATTCGAATGAGATGCTTTGTTTTCTTCTGTCTATGTCTGCGCAAAGGTTTTAAACTTTGATAAACTTGACATTTGACCACCAAAGCTCTATGTTGCATCAGATTTTACAGCTCATTGCAAAATGGAACCTGCATCCCTAACTCCCGTCTGATTTCTAGTTTCCTTCTTAGTCGTATTAGTTGGAGGCTTAATAGCTATTGCTTGATTTTTATTAGACATTTCTATGCTTTCTAATTGGGAAGTCATGGGCTCATGGCTGAAATTCTGCGCTTCCTGAATAGAGAGTTTAAGTCTACTGTGGACTGAAAATATAGAAATGCTCCTGATAAAATATATAAAAATACATAGAGAGGCCGTCTGTTTCTCTAAATTATATTACATGATGCATTCAACAGATATCGCTCAACTGATTTTTAGTTTCATACTCAGATATAATATTCTGAATTTCTTTATTGGCTCCTTTTTTGCTTGTTGTGGTGAGTCTGGTGACTGTCCGTCATCCATAACTTACATTTACTTCTAAATCAGGTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAGGTTAGTCTCTTTAATCATTTCTGATTTCTTGTCAAATAGTACAGGGACATAACACATGCCACTTGGATTTGGTGTTTACGCATGCAGGAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCA</genome_strand>
        <mrna_strand>AACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG.......................................................................AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG......................................................................................................................ATAACTGATATTGCAAATGACATTGGTGTTGGCGCACACTTCAACCCATTTGTGTCTTGCAACAACAAG.........................................................ATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG.......................................................................................GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585027" ref_strand="+" ref_description="SGN-U585027 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157338577|emb|CAO41928.1| (e_value=4e-39) unnamed; (*ATH) AT3G47630.2 (e_value=2e-37) | Symbol: None | similar to Hypothetical protein CBG04116 [Caenorhabditis briggsae] (GB:CAE60498.1) | chr3:17574031-17576414 REVERSE | Aliases: None; ">
      <seq>ggatctgttgcttcttcttcttcaatggcagtctcaatcatcccaaccttaaacccttgaaaaccccaggaacttaattgaaaagatttgccaaattgatagctaaattttgttaattagggttcaaattgcacatgtgtactgatcagtaagtggtaaccaatgcattatcttaataatttcaagcgtgtcttccagatgtttgataaaattcctgtgagaatacttcaagattttgatccaattgaacatatgtttgtatgtaccatattacatgatttttgttttgttttcatatgttaatgtagaaatggtgggacaggataaagctgagctagggggtttgcttgaaattctacccccggtagagttttgctgtatatatggttctaaacttcatcccaacaacaaagatgagacatctatgacagattacattattggagtatctgatcctcgacaatggcattctgagaatctaaaattgaacaaggatcactatgcttcgtgtctcattcgccttggtggagcaaggatgataactgatattgcaaatgacattggtgttggcgtacacttcaacccatttgtgtcttgcaacaacaaggtaaatgaagatgcactttcttttaacacatcagtaatttaanantaacttttacagatgttcnagtatggagttgtacggatgcatgacttgattcna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="74726" stop="73125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74426" g_stop="74009" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74008" i_stop="73900" i_length="109">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73899" g_stop="73843" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="475" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73842" i_stop="73772" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.516" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73771" g_stop="73709" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="538" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73708" i_stop="73591" i_length="118">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73590" g_stop="73423" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="706" r_length="168" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-U585027" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74426" e_stop="74009"/>
          <exon e_start="73899" e_stop="73843"/>
          <exon e_start="73771" e_stop="73709"/>
          <exon e_start="73590" e_stop="73423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCTGTTGCTTCTTCTTCTTCAATGGCAGTCTCAATCATCCCAACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAGGTAATTGCTGAATTTTAAGCAACTCTCTGTCCATCTTTGTTTTCAAAATCTAACGTCTTTCTACAATCCAGAATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATGGTGCTATTTCCTTTCTTGAATTAACTTTGATTTCCCTCATTTCTTTACTACTTTATATATGTTTTTAGTCTTACATTTCAACTCTAACTAAAGAACAATTTACTGTGCATTGTGTCAGATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAGGTAAATGAAGATGCACTTTCTTTTAACACATCAGTAATTTAAGATTAACTTTTACAGATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAA</genome_strand>
        <mrna_strand>GGATCTGTTGCTTCTTCTTCTTCAATGGCAGTCTCAATCATCCCAACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAG.............................................................................................................ACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG.......................................................................AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG......................................................................................................................ATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAGGTAAATGAAGATGCACTTTCTTTTAACACATCAGTAATTTAANANTAACTTTTACAGATGTTCNAGTATGGAGTTGTACGGATGCATGACTTGATTCNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569299" ref_strand="+" ref_description="SGN-U569299 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|115469408|ref|NP_001058303.1| (e_value=3e-78) Os06g0665100; (*ATH) AT5G44730.1 (e_value=1e-77)  Symbol: None | haloacid dehalogenase-like hydrolase family protein, low similarity to SP:Q94915 Rhythmically expressed gene 2 protein (DREG-2) {Drosophila melanogaster}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase | c... ; (*SWP) sp|Q7T012|HDHD3_DANRE (e_value=3e-11) Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Danio rerio GN=hdhd3; ">
      <seq>gacatttaattgtatctgagctaaaataggcttcaaaatgaattgaatatacacataaactgcttcaagaatctagctttatttgaaaagatagcaattttattgaagcccattctctttttcatccatttcagcttctgggactgtaacacacagggtagagttttctgtacagtcatttacaatgtcaattttaacgaagttacgctgcatcacacttgatgttaccggtacactgattgcttacaaaggagagttgggtgactattattgcatggctgccaaagctgctgggcagcaatgtcctgactataagcgggttcatgaaggttttaaactagcatatacagaaatggcaaagaagcattcatgttttggatttgctgaaaagattcctaacattgtttggtggaagacttgtgtcaggaattcctttgttcaggcaggttatgaatatgatgatgagacatttgagaagatatttagacgcatatatgcaacttttggttcttctgcaccttacaacatatttcctgatgctataccgttcctcagatggctccgcgagaggggcgttacagttgggttggtcagcaatgctgagtatcgatatcaggatgtgattcttcctgcattaggcttgaatcagggatctgagtgggatttcggcgtattttccggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="79189" stop="83206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79488" g_stop="79628" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79629" i_stop="82034" i_length="2406">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82035" g_stop="82335" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="442" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82336" i_stop="82525" i_length="190">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82526" g_stop="82732" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="649" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82733" i_stop="82870" i_length="138">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82871" g_stop="82906" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="685" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U569299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79488" e_stop="79628"/>
          <exon e_start="82035" e_stop="82335"/>
          <exon e_start="82526" e_stop="82732"/>
          <exon e_start="82871" e_stop="82906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTAATTGTATCTGAGCTAAAATAGGCTTCAAAATGAATTGAATATACACATAAACTGCTTCAAGAATCTAGCTTTATTTGAAAAGATAGCAATTTTATTGAAGCCCATTCTCTTTTTCATCCATTTCAGCTTCTGGGTAGGCTTCAAATCCATCTTCTATCCTATTTCTTGTGTAAAAATTTGATCTTTTTGTGTTAAAGATGAGCTTTTGGATTCACAAAAATGAAGTCATATTTGGATTCAGAAACCTGAATTTCTTTGTGATTTTTGTGCATGTATGTGTTCATGAACCTGGCCATGAAATGTTAAGCTTTTTCGCAAGTTAATTTGGTGAGGTAGATTGATTGATTGATTTTCATTTGCTGCTGATGGTTTTCTTGTTCTAAAGATTGTCTTTTTCTAATGCCCTAGCAGTTCGTTTACTTTTTTTTTTTTTTTGTATTAACACATTTTGGATAAACTCCACCTGCAGAAAAGGAAGATGCAATATTAAGATGATCTTATTATTTATTTATTCATTTTTGTCTAAATTGACTTGTGATAATTCTGAACTTTGAATTGTGTGGATTAGGATTTAGTCTGTTGCGTGTGATTTATTAAAGTCATTATTCAAATAGTTGACGAGTTTGTTTTGACAAGAAAGATTTAGTTGTCTCTTGTGCTGAGCTGATGGTGACATTCCCAGGGACTTCATTTATGTGATCGTTGGTGGTTGAGATTGAAGAATTGGTGAATGGGGTTAATGCAGTTCAGTAGTTATCTAAATTTCATGTGTAAATTGATCTATGGTATATGGAGATGTTTGGTCAGGTTCCTGAGGTTCAGGATTATAAGCCTGAAGCTTTGCAGGTTTATGACTAAGTGCAAACGTTTTGGATATATCTGTCTTTGAATAGGTTTTGATGATGAGTGGATGTTTAGTGGCTCATCAATAGAGATGTTTGGTGTTTTATATCTTCTAAAATCACTTTCGTAGCTGATATGTTTGTTATTTTAAACAAATATCTATGAAATAATTGTCCACATGATCAGTTGTGTAAGGCATCAGATTTTGCCCCTTGGTGTTTAGGAAAAACCAAGAAGTGGCAGAACATGGGTTAATCCATTATGGTACTTAATCCTTCCGTGATTTTGCAACTTCTATTAGATTGACTGTTGGATTTTCAGGTCAGAATATTATCTATTCATATTTCCTGAGGAATGCATAATTTTAGACGAGAACTAGGGTTATAGAGTAGTTTTCAGGTTCACTAATTCTGTGCATAAGGTTAAAATTTGGATCATGGATCGACCTACAGCTGGTCTATTGGTTCCTTCTGCTCATACCATGTCTGTGTGTACTCATGAACTTGAATCAAGGTTACAAACATCCTAGATTGTTTCGTTTTTCCTTCCCTTTTAGAAGATATTCTTGTGTGTGTATATATGAGAATTTTCAGTCCTATGTTACCTGGATTTAGGTTGGATATATTTGGTTCATGTGTCACTAAGTATCCATTTAGCCATTCCAATTAGCAAATTTTAAGTGTATCTTGAAGGATCTAAATGGACTGACACCAATTTTTCAATCTAGGTATGTCAAGGCAATTGAAAGTTTGCGTAACATAGATTTATTTGAAGTATGAAGTTTAGCATGGAGAAAATGTCTATTTTATGGTAGATTTCTCGGCCATCTTCTTTGATGTCTTAAAATATTGCCATTGGCCCCTTGGTTCTCTTAGAGGTGATTGTTATGATAAGGTTACAGGAAATGTCCATCATACATTCAGAATTAAGATGATAGCTTAGCCACCAAACAAAAAGGGCAGGATGGATGGATGTGGCTTCCAGTGTCATTCTAATTTCTAAACACCTATAAGAAATCTTCCTTCAAACATTTGTTAGGGTTACTTTGCTGGAGCTTTAGGCCCCAGTTCCTACAAGGTTTTTTCATATCAATTTGTGTGGACTAGAACCCACCTCCTTTGATTTACGCAAAGGTATTGTATCATTTCATTGGAAGTTGTGAAGTTTGTGTAGTACTTAATATAAGCAACTGATATCAGTTATCTTGTTCTCGGATCAAGTTACACGGCTCTTTTCTTTTGTGTGTTGAGGAGTTTCTGTTTCATAATTAGTACTGGACATGGTCTTATACTTTGATATTAGAGGAGCGATCTCAATTTCACGGTGAATTTTTCTCTCATAAGAGCTCTTCACTCTTGCTAGATGCCACAATTTGGAACTAGTATATGGTTAGAGAATATTAGAATTACATCCCTTCCAATTACAATTCTGAGCAAGTTAAACATAAGAACATCTTAATAGCAGAAGGGTCTACTTGCATGAAATTCATTCTGGAGAGAACTGGTGTCTATTGATTTTTATTTGGGATAATGAATCCCATTCTGTGGATTCCTTTGTCAACTTGTGTCCTAATAAGATTGCTTCCGAAAATGTACATGTTATATTATGGAATTAAACATTTATTTGGGAATACCATAGTTTATAAGTGTCAGAATTAAGGATGTGTATGACATGATTGGTGAAAATTGCAATGCAGGACTGTAACACACAGGGTAGAGTTTTCTGTACAGTCATTTACAATGTCAATTTTAACGAAGTTACGCTGCATCACACTTGATGTTACCGGTACACTGATTGCTTACAAAGGAGAGTTGGGTGACTATTATTGCATGGCTGCCAAAGCTGCTGGGCAGCAATGTCCTGACTATAAGCGGGTTCATGAAGGTTTTAAACTAGCATATACAGAAATGGCAAAGAAGCATTCATGTTTTGGATTTGCTGAAAAGATTCCTAACATTGTTTGGTGGAAGACTTGTGTCAGGAATTCCTTTGTTCAGGTATTGTGCATGGCATTATCTTGGGATATTTGGTTGTTAGTATTTTTATATATAATCTCAGAAGTCATTTGTTCAATTTATTACAGAACAGCGGCAAAACGTTTTAGTATGACTGTTGAATTATGATTTGAGATCTGAACTGCAATTATTTTATGTTTCTACTGATATCAAGTATCCTTTCTTTTGACAGGCAGGTTATGAATATGATGATGAGACATTTGAGAAGATATTTAGACGCATATATGCAACTTTTGGTTCTTCTGCACCTTACAACATATTTCCTGATGCTATACCGTTCCTCAGATGGCTCCGCGAGAGGGGCGTTACAGTTGGGTTGGTCAGCAATGCTGAGTATCGATATCAGGATGTGATTCTTCCTGCATTAGGCTTGAATCAGGTAGATACACAATGGTTGTCATTTCATTTTTTTGTGTTGTATCTTCTTATTACATCTTTTGGCTGATTTAATCTTTTTCCAAACACACTGAAAAACCATGAAGTAGTTGAACACCTTTTTGTGTGTGACCAAAATCAGGGATCTGAGTGGGATTTCGGCGTATTTTCCGGTCTT</genome_strand>
        <mrna_strand>GACATTTAATTGTATCTGAGCTAAAATAGGCTTCAAAATGAATTGAATATACACATAAACTGCTTCAAGAATCTAGCTTTATTTGAAAAGATAGCAATTTTATTGAAGCCCATTCTCTTTTTCATCCATTTCAGCTTCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTAACACACAGGGTAGAGTTTTCTGTACAGTCATTTACAATGTCAATTTTAACGAAGTTACGCTGCATCACACTTGATGTTACCGGTACACTGATTGCTTACAAAGGAGAGTTGGGTGACTATTATTGCATGGCTGCCAAAGCTGCTGGGCAGCAATGTCCTGACTATAAGCGGGTTCATGAAGGTTTTAAACTAGCATATACAGAAATGGCAAAGAAGCATTCATGTTTTGGATTTGCTGAAAAGATTCCTAACATTGTTTGGTGGAAGACTTGTGTCAGGAATTCCTTTGTTCAG..............................................................................................................................................................................................GCAGGTTATGAATATGATGATGAGACATTTGAGAAGATATTTAGACGCATATATGCAACTTTTGGTTCTTCTGCACCTTACAACATATTTCCTGATGCTATACCGTTCCTCAGATGGCTCCGCGAGAGGGGCGTTACAGTTGGGTTGGTCAGCAATGCTGAGTATCGATATCAGGATGTGATTCTTCCTGCATTAGGCTTGAATCAG..........................................................................................................................................GGATCTGAGTGGGATTTCGGCGTATTTTCCGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580884" ref_strand="+" ref_description="SGN-U580884 Tomato 200607#2 [9 ESTs aligned] ">
      <seq>aagaaaaatagttcaacacttgagcagcccttctaagatagaaggtgctaaacagtggccaaaatctttctactgccttgcaaacttcctgccctagaactaactatacacaccatacagcttcaaacaaaggcagttgttatgcagctgattagttgtatttcagctacagacatctacaggcaatgaagtacaaaaacagaaaacatctcaaaatttagatagaaaacagccttatggattgaaatactcaagtcttgacaaataaaaaaggtaaaactaattaactaataagcacgtctatgaccaggaacttcagctgcaacaaactcctgcccaaaaacaagtgaataaacggcaaaattttgaactacatgacgtgcattttaacatacataggagcacactcaattggggtaaaaaccttcacctctactcctcttgagcatcatctttattcttctttttcttcttatccttcttcttgcttttacttccttcatcgtcacttccaacatcaccattctctgattctttatctttcttctttttctttttcttcttctcggacttctcctcatctgaggatgcaacatcgttattctctttgtccttctttttcttttcctttttcacagactccacatcaggggatgcagcttcatcagcttctttcttctttttcttcttcttttcttttttcagttcagacttatccaatgcttcctcgactacctctacctttggtttctttaaagcactgggtgcaggggatacatctaaatcatccaattctcctgttagcgtcctcatcatcttccttgtgtttcttctttttcttctcaacctcaactgcagcaccatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="87902" stop="89085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88202" g_stop="89071" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="868" r_length="868" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-U580884" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88202" e_stop="89071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAGGTAAAACTAATTAACTAATAAGCACGTCTATGACCAGGAACTTCAGCTGCAACAAACTCCTGCCCAAAAACAAGTGAATAAACGGCAAAATTTTGAACTACATGACGTGCATTTTAACATACATAGGAGCACACTCAATTGGGGTAAAAACCTTCACCTCTACTCCTCTTGAGCATCATCTTTATTCTTCTTTTTCTTCTTATCCTTCTTCTTGCTTTTACTTCCTTCATCGTCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTTTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAACATCGTTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCACAGACTCCACATCAGGGGATGCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTATCCAATGCTTCCTCGACTACCTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATACATCTAAATCATCCAATTTTCTCTTGTTAGCGTCCTCATCATCTTCCTTGTGTTTCTTCTTTTTCTTCTCAACCTCAACTGCAGCACCATCAGC</genome_strand>
        <mrna_strand>AAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAGGTAAAACTAATTAACTAATAAGCACGTCTATGACCAGGAACTTCAGCTGCAACAAACTCCTGCCCAAAAACAAGTGAATAAACGGCAAAATTTTGAACTACATGACGTGCATTTTAACATACATAGGAGCACACTCAATTGGGGTAAAAACCTTCACCTCTACTCCTCTTGAGCATCATCTTTATTCTTCTTTTTCTTCTTATCCTTCTTCTTGCTTTTACTTCCTTCATCGTCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTTTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAACATCGTTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCACAGACTCCACATCAGGGGATGCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTATCCAATGCTTCCTCGACTACCTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATACATCTAAATCATCCAA--TTCTCCTGTTAGCGTCCTCATCATCTTCCTTGTGTTTCTTCTTTTTCTTCTCAACCTCAACTGCAGCACCATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5144" PGL_stop="4588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5144" e_stop="4838"/>
            <exon e_start="4711" e_stop="4588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5144" e_stop="4838" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4837" i_stop="4712" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4711" e_stop="4588" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5144" stop="4838"/>
              <exon start="4711" stop="4588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCGTAATGATGAAGTTATGACCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTAC : GGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCAATGTCTCACAGGTTCATATTGTTGTTGACAAAGATACAAAGCGGTCCAAAGGAATTGCATATGTTCTCTATCCATTACCAGAATCT</gDNA_template>
            <first_frame> P  V  M  M  K  L  *  P  I  R  I  I  S  K  V  E  *  G  K  I  G  L  I  Q  K  V  V  K  T  M  V  V  I  M  K  V  T  R  A  V  K  M  Q  M  L  V  I  S  L  N  L  M  I  Q  R  N  F  *  V  M  V  S  P  D  L  T  M  R  Q  R  L  S  L  L  T  L  H  Q  V  L  R  T  K  *  K  K  I  W  R  A  D  D  Y  L  F  V  I  F  H  T  P  L   : R  K  R  S  W  K  N  T  L  E  H  L  A  M  S  H  R  F  I  L  L  L  T  K  I  Q  S  G  P  K  E  L  H  M  F  S  I  H  Y  Q  N   </first_frame>
            <second_frame>  P  *  *  *  S  Y  D  R  Y  G  L  F  Q  K  *  S  E  E  R  L  V  *  F  R  K  *  *  R  R  W  *  *  *  *  K  *  Q  E  Q  *  R  C  K  C  W  *  Y  P  *  T  *  *  Y  R  G  I  F  E  *  W  S  H  Q  I  *  Q  *  G  S  A  *  A  C  *  P  F  I  K  C  *  G  R  N  R  R  R  S  G  E  R  T  I  I  C  S  *  S  S  I  H  H  Y  :  G  R  G  A  G  R  T  L  *  S  I  W  Q  C  L  T  G  S  Y  C  C  *  Q  R  Y  K  A  V  Q  R  N  C  I  C  S  L  S  I  T  R  I  </second_frame>
            <third_frame>   R  N  D  E  V  M  T  D  T  D  Y  F  K  S  R  V  R  K  D  W  S  D  S  E  S  S  E  D  D  G  S  D  N  E  S  D  K  S  S  E  D  A  N  A  G  N  I  L  E  P  D  D  T  E  E  F  L  S  D  G  L  T  R  S  N  N  E  A  A  L  E  L  V  D  P  S  S  S  V  K  D  E  I  E  E  D  L  E  S  G  R  L  F  V  R  N  L  P  Y  T  T  T :   E  E  E  L  E  E  H  F  R  A  F  G  N  V  S  Q  V  H  I  V  V  D  K  D  T  K  R  S  K  G  I  A  Y  V  L  Y  P  L  P  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5142" stop="4838"/>
                    <exon start="4711" stop="4588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNDEVMTDTDYFKSRVRKDWSDSESSEDDGSDNESDKSSEDANAGNILEPDDTEEFLSDGLTRSNNEAALELVDPSSSVKDEIEEDLESGRLFVRNLPYTTTEEELEEHFRAFGNVSQVHIVVDKDTKRSKGIAYVLYPLPES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15590" PGL_stop="23481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15590" e_stop="15775"/>
            <exon e_start="15871" e_stop="16089"/>
            <exon e_start="16983" e_stop="17120"/>
            <exon e_start="17597" e_stop="17722"/>
            <exon e_start="17967" e_stop="18095"/>
            <exon e_start="18637" e_stop="18726"/>
            <exon e_start="18807" e_stop="18957"/>
            <exon e_start="20667" e_stop="20776"/>
            <exon e_start="21450" e_stop="21521"/>
            <exon e_start="22169" e_stop="22274"/>
            <exon e_start="22368" e_stop="22568"/>
            <exon e_start="22905" e_stop="22947"/>
            <exon e_start="23052" e_stop="23481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.338" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.681" acc_prob="0.166" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.367" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.282" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="15590" e_stop="15775" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15776" i_stop="15870" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15871" e_stop="16089" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="16090" i_stop="16982" i_length="893"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16983" e_stop="17120" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17121" i_stop="17596" i_length="476"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17597" e_stop="17722" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="17723" i_stop="17966" i_length="244"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17967" e_stop="18095" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18096" i_stop="18636" i_length="541"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18637" e_stop="18726" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.338" acc_prob="0.952">
            <gDNA_intron_boundary i_start="18727" i_stop="18806" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18807" e_stop="18957" e_length="151"/>
          </exon>
          <intron i_serial="7" don_prob="0.681" acc_prob="0.166">
            <gDNA_intron_boundary i_start="18958" i_stop="20666" i_length="1709"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20667" e_stop="20776" e_length="110"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20777" i_stop="21449" i_length="673"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21450" e_stop="21521" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.367" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21522" i_stop="22168" i_length="647"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22169" e_stop="22274" e_length="106"/>
          </exon>
          <intron i_serial="10" don_prob="0.282" acc_prob="0.906">
            <gDNA_intron_boundary i_start="22275" i_stop="22367" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="22368" e_stop="22568" e_length="201"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22569" i_stop="22904" i_length="336"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="22905" e_stop="22947" e_length="43"/>
          </exon>
          <intron i_serial="12" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22948" i_stop="23051" i_length="104"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="23052" e_stop="23481" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15590" stop="15775"/>
              <exon start="15871" stop="16089"/>
              <exon start="16983" stop="17120"/>
              <exon start="17597" stop="17722"/>
              <exon start="17967" stop="18095"/>
              <exon start="18637" stop="18726"/>
              <exon start="18807" stop="18957"/>
              <exon start="20667" stop="20776"/>
              <exon start="21450" stop="21521"/>
              <exon start="22169" stop="22274"/>
              <exon start="22368" stop="22568"/>
              <exon start="22905" stop="22947"/>
              <exon start="23052" stop="23481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG : CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG : TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTGCTTCCAAAGACGTGGAACCTCTCCGTCGAGCTAGG : GTAATAATGGAAATTCCTTTAGAACTTATGTTAACCATAAGCAAAAAGCTTCCTTGGATGTTTTTTCCAGATATTATACCTGTAGGACATCCAGTATTCGACATTATCAATTCAACCAATCCCGAG : ACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAG : GAGGATCTTTTGGAGTTGCAAGACGAGAAGCTTGCTTCTACCATGAGAGAACAGCAAAATCGAGCACTTGAGTTTTGGGAGAAAAACTGG : CATTCTGCAGTACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAGCATGCAAACAAGAATTGGTTCACTGGTTCAAGAAGCAAATATGTTGGTACCTTATGCTG : ACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCAGGACAAAAAATTAGAAAAGGAGATGAG : ATGACTGTTAATTACATGGCTGGACAGAAGAATGACTTATTTATGCAGAGATATGGTTTCTCATCGCCTGTG : AATCCTTGGGATGTCATTCATTTCACCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA : CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG : ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA : GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACC</gDNA_template>
            <first_frame> T  P  G  H  S  L  T  D  S  R  V  D  N  V  S  R  T  Q  I  P  S  M  Y  E  S  S  L  L  K  F  H  *  I  F  S  S  L  S  R  M  V  S  S  T  I  L  I  Q  Q  P  T  N  F  F  H  Q  P  E  L  H  H  Q  :  L  W  R  G  L  Q  H  G  C  V  A  S  L  Q  K  Q  P  I  L  V  C  N  S  N  K  R  N  R  P  L  R  V  S  S  S  A  N  G  A  V  T  S  S  T  L  E  A  Y  D  S  S  P  S  P  S  A  F  P  L  F  T  P  P  S  Q  P  Q  D  T  P  A  S  Q  :  L  E  L  A  D  P  D  F  Y  K  I  G  Y  V  R  S  F  R  A  Y  G  I  E  F  R  E  G  P  D  G  Y  G  V  F  A  S  K  D  V  E  P  L  R  R  A  R  :  V  I  M  E  I  P  L  E  L  M  L  T  I  S  K  K  L  P  W  M  F  F  P  D  I  I  P  V  G  H  P  V  F  D  I  I  N  S  T  N  P  E  :  T  D  S  D  L  R  L  A  C  L  L  L  Y  A  F  D  C  K  D  N  F  W  Q  L  Y  G  D  F  L  P  S  A  D  E  C  T  S  F  L  L  A  T  E  :  E  D  L  L  E  L  Q  D  E  K  L  A  S  T  M  R  E  Q  Q  N  R  A  L  E  F  W  E  K  N  W  :  H  S  A  V  P  L  K  I  K  R  L  A  Q  D  P  E  R  F  I  W  A  M  S  I  A  Q  S  R  C  I  S  M  Q  T  R  I  G  S  L  V  Q  E  A  N  M  L  V  P  Y  A   : D  M  M  N  H  S  F  Q  P  N  C  F  F  H  W  R  F  K  D  R  M  L  E  V  M  I  N  A  G  Q  K  I  R  K  G  D  E  :  M  T  V  N  Y  M  A  G  Q  K  N  D  L  F  M  Q  R  Y  G  F  S  S  P  V  :  N  P  W  D  V  I  H  F  T  G  D  A  K  I  H  L  D  T  F  L  S  V  F  N  I  S  G  L  P  G  E  Y  Y  H  N   : T  G  K  L  S  N  D  G  D  R  F  V  D  G  A  I  I  A  A  A  R  T  L  P  T  W  S  D  G  D  L  P  P  I  P  S  L  E  R  K  A  V  K  E  L  Q  E  E  C  H  Q  M  L  A  E  F  P  T  T  S  D  E  D  Q  K  I  L   : D  S  M  P  E  C  R  R  T  F  E  A  A  I  K :   Y  R  L  H  R  K  L  L  I  E  K  V  I  Q  A  L  D  I  Y  Q  D  R  I  L  F  *  T  *  I  T  A  G  V  E  A  I  F  T  R  N  H  V  A  I  E  D  G  R  Q  D  Y  G  S  I  S  A  M  Q  K  A  L  S  I  T  I  A  F  A  T  F  *  G  L  L  L  G  V  G  V  G  S  S  *  *  W  C  I  G  G  K  *  L  I  P  L  V  L  E  R  Y  E  V  K  K  N  E  K  F  S  I  E  I  M  M  K  M  K  D  S  F  G  G  Y  V  *  *  Q  V  E  G  L  F  C  M  N  E  I  Y  E  F  S  L  T </first_frame>
            <second_frame>  P  L  G  T  L  S  L  T  V  E  W  I  T  F  Q  E  P  K  F  H  R  C  M  N  L  L  Y  *  N  S  T  K  F  L  A  H  S  Q  E  W  F  L  P  P  F  *  F  S  N  R  R  T  S  S  T  S  Q  S  F  T  I  S :   Y  G  E  V  C  S  M  D  V  L  H  H  C  R  N  N  L  F  W  Y  V  I  V  T  R  E  T  D  L  *  E  F  L  Q  V  L  M  V  L  L  L  L  P  L  W  R  P  M  I  L  L  R  L  L  L  H  F  L  F  L  H  P  L  L  N  P  K  I  L  P  L  L  S :   W  N  W  Q  I  L  I  S  T  K  *  D  M  L  E  V  F  E  P  T  G  L  N  S  G  R  D  Q  M  G  M  E  C  L  L  P  K  T  W  N  L  S  V  E  L  G :   *  *  W  K  F  L  *  N  L  C  *  P  *  A  K  S  F  L  G  C  F  F  Q  I  L  Y  L  *  D  I  Q  Y  S  T  L  S  I  Q  P  I  P  R :   Q  I  R  T  *  G  W  R  A  F  F  Y  M  L  L  I  A  R  T  T  F  G  S  Y  T  E  T  S  C  L  V  L  M  N  A  L  A  F  F  *  L  P  R :   R  I  F  W  S  C  K  T  R  S  L  L  L  P  *  E  N  S  K  I  E  H  L  S  F  G  R  K  T  G :   I  L  Q  Y  L  S  K  L  S  V  L  L  R  I  L  R  D  L  F  G  Q  *  V  *  H  N  L  D  A  S  A  C  K  Q  E  L  V  H  W  F  K  K  Q  I  C  W  Y  L  M  L  :  T  *  *  I  I  L  F  S  Q  I  A  F  S  I  G  A  S  R  T  A  C  W  R  *  *  *  M  Q  D  K  K  L  E  K  E  M  R :   *  L  L  I  T  W  L  D  R  R  M  T  Y  L  C  R  D  M  V  S  H  R  L  * :   I  L  G  M  S  F  I  S  P  E  M  P  K  F  I  *  T  P  F  Y  R  S  L  T  Y  L  A  S  L  E  N  I  T  T  T  :  Q  V  S  Y  Q  M  M  E  T  D  S  S  M  E  Q  *  *  Q  P  Q  E  R  C  P  L  G  Q  M  E  I  S  L  Q  F  Q  V  *  R  G  K  Q  *  R  S  C  K  K  N  A  T  R  C  L  Q  N  F  P  Q  L  L  T  K  T  R  K  S  *  :  I  R  C  L  N  A  G  E  H  S  K  Q  Q  *   : S  I  D  Y  I  G  N  Y  *  *  R  R  L  Y  R  P  W  T  F  T  K  T  G  F  C  S  K  H  E  *  Q  Q  E  L  K  Q  S  L  P  E  I  M  *  P  *  K  T  G  V  K  I  M  V  P  F  Q  L  C  R  K  L  Y  L  S  Q  *  L  L  Q  H  F  E  G  F  C  W  G  W  V  *  E  V  A  S  N  G  V  *  V  E  N  D  L  Y  H  *  F  W  K  D  M  K  *  R  K  M  R  S  S  L  *  K  S  *  *  K  *  R  I  A  L  V  D  M  F  D  N  K  *  K  G  S  F  A  *  M  K  Y  M  N  S  L  *   </second_frame>
            <third_frame>   P  W  A  L  S  H  *  Q  *  S  G  *  R  F  K  N  P  N  S  I  D  V  *  I  F  F  T  E  I  P  L  N  F  *  L  T  L  K  N  G  F  F  H  H  S  N  S  A  T  D  E  L  L  P  P  A  R  A  S  P  S   : A  M  E  R  S  A  A  W  M  C  C  I  I  A  E  T  T  Y  F  G  M  *  *  *  Q  E  K  Q  T  F  E  S  F  F  K  C  *  W  C  C  Y  F  F  H  F  G  G  L  *  F  F  S  V  S  F  C  I  S  S  F  Y  T  P  F  S  T  P  R  Y  S  R  F  S   : V  G  T  G  R  S  *  F  L  Q  N  R  I  C  *  K  F  S  S  L  R  D  *  I  Q  G  G  T  R  W  V  W  S  V  C  F  Q  R  R  G  T  S  P  S  S  *   : G  N  N  G  N  S  F  R  T  Y  V  N  H  K  Q  K  A  S  L  D  V  F  S  R  Y  Y  T  C  R  T  S  S  I  R  H  Y  Q  F  N  Q  S  R   : D  R  F  G  L  E  V  G  V  P  S  F  I  C  F  *  L  Q  G  Q  L  L  A  A  I  R  R  L  L  A  *  C  *  *  M  H  *  L  S  S  S  Y  R   : G  G  S  F  G  V  A  R  R  E  A  C  F  Y  H  E  R  T  A  K  S  S  T  *  V  L  G  E  K  L   : A  F  C  S  T  S  Q  N  *  A  S  C  S  G  S  *  E  I  Y  L  G  N  E  Y  S  T  I  S  M  H  Q  H  A  N  K  N  W  F  T  G  S  R  S  K  Y  V  G  T  L  C  * :   H  D  E  S  F  F  S  A  K  L  L  F  P  L  A  L  Q  G  P  H  A  G  G  D  D  K  C  R  T  K  N  *  K  R  R  *   : D  D  C  *  L  H  G  W  T  E  E  *  L  I  Y  A  E  I  W  F  L  I  A  C   : E  S  L  G  C  H  S  F  H  R  R  C  Q  N  S  S  R  H  L  F  I  G  L  *  H  I  W  P  P  W  R  I  L  P  Q  H :   R  *  A  I  K  *  W  R  Q  I  R  R  W  S  N  N  S  S  R  K  N  V  A  H  L  V  R  W  R  S  P  S  N  S  K  S  R  E  E  S  S  E  G  A  A  R  R  M  P  P  D  A  C  R  I  S  H  N  F  *  R  R  P  E  N  P  R :   F  D  A  *  M  Q  E  N  I  R  S  S  N  K  :  V  *  I  T  S  E  I  T  D  R  E  G  Y  T  G  L  G  H  L  P  R  Q  D  S  V  L  N  M  N  N  S  R  S  *  S  N  L  Y  Q  K  S  C  S  H  R  R  R  A  S  R  L  W  F  H  F  S  Y  A  E  S  F  I  Y  H  N  S  F  C  N  I  L  R  A  F  V  G  G  G  C  R  K  *  L  V  M  V  Y  R  W  K  M  T  Y  T  I  S  F  G  K  I  *  S  E  E  K  *  E  V  L  Y  R  N  H  D  E  N  E  G  *  L  W  W  I  C  L  I  T  S  R  R  A  L  L  H  E  *  N  I  *  I  L  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15686" stop="15775"/>
                    <exon start="15871" stop="16089"/>
                    <exon start="16983" stop="17120"/>
                    <exon start="17597" stop="17722"/>
                    <exon start="17967" stop="18095"/>
                    <exon start="18637" stop="18726"/>
                    <exon start="18807" stop="18957"/>
                    <exon start="20667" stop="20776"/>
                    <exon start="21450" stop="21521"/>
                    <exon start="22169" stop="22274"/>
                    <exon start="22368" stop="22568"/>
                    <exon start="22905" stop="22947"/>
                    <exon start="23052" stop="23130"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSSLSRMVSSTILIQQPTNFFHQPELHHQLWRGLQHGCVASLQKQPILVCNSNKRNRPLRVSSSANGAVTSSTLEAYDSSPSPSAFPLFTPPSQPQDTPASQLELADPDFYKIGYVRSFRAYGIEFREGPDGYGVFASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPVGHPVFDIINSTNPETDSDLRLACLLLYAFDCKDNFWQLYGDFLPSADECTSFLLATEEDLLELQDEKLASTMREQQNRALEFWEKNWHSAVPLKIKRLAQDPERFIWAMSIAQSRCISMQTRIGSLVQEANMLVPYADMMNHSFQPNCFFHWRFKDRMLEVMINAGQKIRKGDEMTVNYMAGQKNDLFMQRYGFSSPVNPWDVIHFTGDAKIHLDTFLSVFNISGLPGEYYHNTGKLSNDGDRFVDGAIIAAARTLPTWSDGDLPPIPSLERKAVKELQEECHQMLAEFPTTSDEDQKILDSMPECRRTFEAAIKYRLHRKLLIEKVIQALDIYQDRILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29383" PGL_stop="30179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29383" e_stop="30179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="29383" e_stop="30179" e_length="797"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29383" stop="30179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGTCGGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATATGGTCCCGTACCATGGCATGCCAGATGGAACCTGC</gDNA_template>
            <first_frame> N  L  V  H  A  Y  L  A  R  R  A  L  D  Y  L  I  G  F  N  I  S  P  L  L  W  R  K  L  P  G  C  Q  S  A  G  R  V  Q  S  A  A  L  S  L  I  C  D  R  E  M  E  I  D  G  F  K  P  Q  E  Y  W  T  V  L  V  E  F  K  K  N  K  N  L  D  L  A  N  N  F  L  S  S  H  L  T  H  F  D  T  K  K  L  S  Q  F  S  V  S  S  H  T  E  A  M  E  I  E  G  K  I  N  S  S  N  F  E  V  L  S  S  K  I  T  K  K  Q  R  N  P  S  P  P  Y  I  T  S  T  L  Q  Q  D  A  A  N  K  L  D  F  S  S  T  Y  T  M  K  L  A  Q  K  L  Y  E  G  I  Q  L  S  D  G  K  S  T  G  L  I  T  Y  I  R  T  D  G  L  H  I  S  D  E  A  T  K  D  I  Q  S  Y  I  S  E  R  Y  G  Q  N  F  A  S  K  N  G  R  K  Y  F  K  K  V  K  N  A  Q  E  A  H  E  A  I  R  P  T  D  I  R  R  L  P  S  K  L  V  G  V  L  D  D  D  A  L  K  L  Y  K  L  I  W  S  R  T  M  A  C  Q  M  E  P   </first_frame>
            <second_frame>  I  *  C  M  P  I  L  Q  G  V  L  L  I  T  *  L  G  S  T  F  L  H  F  C  G  G  N  Y  L  V  V  N  L  L  V  G  F  S  L  L  P  Y  H  L  Y  V  T  E  K  W  K  L  M  D  S  N  H  R  S  I  G  Q  S  W  L  N  L  R  R  T  K  T  *  I  *  P  I  T  F  C  R  P  I  *  P  I  L  I  P  R  N  *  V  S  S  L  L  A  L  I  P  K  Q  W  K  L  K  G  R  *  I  H  Q  T  L  K  F  L  A  L  R  *  P  K  S  R  E  T  P  L  L  L  I  *  H  Q  H  F  S  K  M  P  Q  T  N  W  T  F  H  Q  H  I  R  *  N  L  H  K  S  Y  M  R  E  S  S  Y  L  M  A  S  Q  Q  D  *  *  L  T  S  E  Q  M  A  C  T  F  Q  M  K  L  P  R  T  F  N  P  I  S  V  K  G  M  D  R  I  L  H  Q  R  M  V  A  N  T  S  R  R  *  R  M  L  K  R  P  M  K  L  L  D  P  L  I  S  E  G  Y  P  Q  S  L  S  G  C  W  M  M  M  H  L  S  Y  T  N  L  Y  G  P  V  P  W  H  A  R  W  N  L  </second_frame>
            <third_frame>   F  S  A  C  L  S  C  K  A  C  S  *  L  P  D  W  V  Q  H  F  S  T  S  V  E  E  I  T  W  L  S  I  C  W  S  G  S  V  C  C  P  I  T  Y  M  *  Q  R  N  G  N  *  W  I  Q  T  T  G  V  L  D  S  P  G  *  I  *  E  E  Q  K  P  R  F  S  Q  *  L  F  V  V  P  F  D  P  F  *  Y  Q  E  I  K  S  V  L  C  *  L  S  Y  R  S  N  G  N  *  R  E  D  K  F  I  K  L  *  S  S  *  L  *  D  N  Q  K  A  E  K  P  L  S  S  L  Y  N  I  N  T  S  A  R  C  R  K  Q  I  G  L  F  I  N  I  Y  D  E  T  C  T  K  A  I  *  G  N  P  V  I  *  W  Q  V  N  R  I  D  N  L  H  Q  N  R  W  L  A  H  F  R  *  S  Y  Q  G  H  S  I  L  Y  Q  *  K  V  W  T  E  F  C  I  K  E  W  S  Q  I  L  Q  E  G  E  E  C  S  R  G  P  *  S  Y  *  T  H  *  Y  P  K  V  T  L  K  A  C  R  G  A  G  *  *  C  T  *  A  I  Q  T  Y  M  V  P  Y  H  G  M  P  D  G  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29383" stop="30177"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDGFKPQEYWTVLVEFKKNKNLDLANNFLSSHLTHFDTKKLSQFSVSSHTEAMEIEGKINSSNFEVLSSKITKKQRNPSPPYITSTLQQDAANKLDFSSTYTMKLAQKLYEGIQLSDGKSTGLITYIRTDGLHISDEATKDIQSYISERYGQNFASKNGRKYFKKVKNAQEAHEAIRPTDIRRLPSKLVGVLDDDALKLYKLIWSRTMACQMEP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32903" PGL_stop="36839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32903" e_stop="33014"/>
            <exon e_start="33129" e_stop="33218"/>
            <exon e_start="34647" e_stop="34712"/>
            <exon e_start="34829" e_stop="34924"/>
            <exon e_start="36360" e_stop="36839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.859" e_score="0.982"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="32903" e_stop="33014" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.859">
            <gDNA_intron_boundary i_start="33015" i_stop="33128" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="33129" e_stop="33218" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33219" i_stop="34646" i_length="1428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34647" e_stop="34712" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="34713" i_stop="34828" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34829" e_stop="34924" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="34925" i_stop="36359" i_length="1435"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="36360" e_stop="36839" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32903" stop="33014"/>
              <exon start="33129" stop="33218"/>
              <exon start="34647" stop="34712"/>
              <exon start="34829" stop="34924"/>
              <exon start="36360" stop="36839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGCCAAGACATTATATGGTGAAGAGGATGAAGATATCTCCTCTGAAGACACTAAAAGAAGTGTAGAACCGCCAAAATTGCTGGGTGTCCATCCTTCTTCAAATGAGAAG : ATTCTTATGAAGAATGGTCCATATGGATACTATGTTCAGCTTGGAGAAGACAAGAAAGGATACGTTCCCAAGCGGGCTTCGCTTTCACAG : GTGAAGGATGTCAATTCTGTTACCTTGGAAGATGCCCTGGAGTTGCTTCGTTACCCTGTAACATTG : GGAAACCACCCCGATGATGGCCAGCCGGTCGTTTTAAAGCTTGCAAAGTTCGGATTTACAATCAGACATAGGCGAACAATTGCTCCAGTACCCAAG : AATTTAAAACCCAAAGACATAACCATGGAAAAAGCTTTGAAGCTTTTGCTAAGTAAAGATGTAAGGCGATGTGGTCGACCTAAGCGCCAGCCACAGGTGGAAGAGGCCATTGAGGCAACATAACATCACACTTGTTAGCAGATTAATGTACCATAGAAGTCATTCTTTGATGAAGGCCCTCCTCAGGCTGTTTTATTTTATAGGAGGAATAGTGGAATACGAAGCTTATTTACCCCCACACGGGCTTGGATACTCTACAAGTATGAAGAGTTGTATATCTTGAGTGGCAAAGACGATTTTGTTAGTAGAAATTCCATTTCTGTAATCTCTTCTTACAATCTTTGTTATAGCATTAGGCAATAACTTGGCCATCCAAATGGTCTGTTTAATTCTCCTTTTTTTCTGCCTTGCTAAGATGTAAAGAGAGTGAAGGCATTTTCATTGGCAGTTAAACGCTTCAATTTGCTGAATACATCCTTT</gDNA_template>
            <first_frame> Y  C  Q  D  I  I  W  *  R  G  *  R  Y  L  L  *  R  H  *  K  K  C  R  T  A  K  I  A  G  C  P  S  F  F  K  *  E   : D  S  Y  E  E  W  S  I  W  I  L  C  S  A  W  R  R  Q  E  R  I  R  S  Q  A  G  F  A  F  T   : G  E  G  C  Q  F  C  Y  L  G  R  C  P  G  V  A  S  L  P  C  N  I   : G  K  P  P  R  *  W  P  A  G  R  F  K  A  C  K  V  R  I  Y  N  Q  T  *  A  N  N  C  S  S  T  Q   : E  F  K  T  Q  R  H  N  H  G  K  S  F  E  A  F  A  K  *  R  C  K  A  M  W  S  T  *  A  P  A  T  G  G  R  G  H  *  G  N  I  T  S  H  L  L  A  D  *  C  T  I  E  V  I  L  *  *  R  P  S  S  G  C  F  I  L  *  E  E  *  W  N  T  K  L  I  Y  P  H  T  G  L  D  T  L  Q  V  *  R  V  V  Y  L  E  W  Q  R  R  F  C  *  *  K  F  H  F  C  N  L  F  L  Q  S  L  L  *  H  *  A  I  T  W  P  S  K  W  S  V  *  F  S  F  F  S  A  L  L  R  C  K  E  S  E  G  I  F  I  G  S  *  T  L  Q  F  A  E  Y  I  L  </first_frame>
            <second_frame>  I  A  K  T  L  Y  G  E  E  D  E  D  I  S  S  E  D  T  K  R  S  V  E  P  P  K  L  L  G  V  H  P  S  S  N  E  K  :  I  L  M  K  N  G  P  Y  G  Y  Y  V  Q  L  G  E  D  K  K  G  Y  V  P  K  R  A  S  L  S  Q  :  V  K  D  V  N  S  V  T  L  E  D  A  L  E  L  L  R  Y  P  V  T  L  :  G  N  H  P  D  D  G  Q  P  V  V  L  K  L  A  K  F  G  F  T  I  R  H  R  R  T  I  A  P  V  P  K  :  N  L  K  P  K  D  I  T  M  E  K  A  L  K  L  L  L  S  K  D  V  R  R  C  G  R  P  K  R  Q  P  Q  V  E  E  A  I  E  A  T  *  H  H  T  C  *  Q  I  N  V  P  *  K  S  F  F  D  E  G  P  P  Q  A  V  L  F  Y  R  R  N  S  G  I  R  S  L  F  T  P  T  R  A  W  I  L  Y  K  Y  E  E  L  Y  I  L  S  G  K  D  D  F  V  S  R  N  S  I  S  V  I  S  S  Y  N  L  C  Y  S  I  R  Q  *  L  G  H  P  N  G  L  F  N  S  P  F  F  L  P  C  *  D  V  K  R  V  K  A  F  S  L  A  V  K  R  F  N  L  L  N  T  S  F </second_frame>
            <third_frame>   L  P  R  H  Y  M  V  K  R  M  K  I  S  P  L  K  T  L  K  E  V  *  N  R  Q  N  C  W  V  S  I  L  L  Q  M  R  R :   F  L  *  R  M  V  H  M  D  T  M  F  S  L  E  K  T  R  K  D  T  F  P  S  G  L  R  F  H  R :   *  R  M  S  I  L  L  P  W  K  M  P  W  S  C  F  V  T  L  *  H  W :   E  T  T  P  M  M  A  S  R  S  F  *  S  L  Q  S  S  D  L  Q  S  D  I  G  E  Q  L  L  Q  Y  P  R :   I  *  N  P  K  T  *  P  W  K  K  L  *  S  F  C  *  V  K  M  *  G  D  V  V  D  L  S  A  S  H  R  W  K  R  P  L  R  Q  H  N  I  T  L  V  S  R  L  M  Y  H  R  S  H  S  L  M  K  A  L  L  R  L  F  Y  F  I  G  G  I  V  E  Y  E  A  Y  L  P  P  H  G  L  G  Y  S  T  S  M  K  S  C  I  S  *  V  A  K  T  I  L  L  V  E  I  P  F  L  *  S  L  L  T  I  F  V  I  A  L  G  N  N  L  A  I  Q  M  V  C  L  I  L  L  F  F  C  L  A  K  M  *  R  E  *  R  H  F  H  W  Q  L  N  A  S  I  C  *  I  H  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32904" stop="33014"/>
                    <exon start="33129" stop="33218"/>
                    <exon start="34647" stop="34712"/>
                    <exon start="34829" stop="34924"/>
                    <exon start="36360" stop="36482"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAKTLYGEEDEDISSEDTKRSVEPPKLLGVHPSSNEKILMKNGPYGYYVQLGEDKKGYVPKRASLSQVKDVNSVTLEDALELLRYPVTLGNHPDDGQPVVLKLAKFGFTIRHRRTIAPVPKNLKPKDITMEKALKLLLSKDVRRCGRPKRQPQVEEAIEAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36516" stop="36722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSFFDEGPPQAVLFYRRNSGIRSLFTPTRAWILYKYEELYILSGKDDFVSRNSISVISSYNLCYSIRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41281" PGL_stop="40619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41281" e_stop="40619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41281" e_stop="40619" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41281" stop="40619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACACTCTCTGCTTCCCCTGTTTCTGTTCCTCTTCAACAACAATCCAATTCATTTACCCAAAATCCACCAAGAAAACTACTTTCAACTTCATCACCCACAAGTACACTCATTTTCAAGAAATTTCAACAAGAACACACCTCAGAAACACCCTCTTCAGCTTCATGGATCGATACTCTTCGGTCTCAAGTACGCTTAAATTGCTTCAAAGAAGCAATCTTTACATATATACAGATGACTTCTGAAGGTGTAAGGCCTGATAATTTTGTTTTCCCTGCAGTTCTGAAAGCTGCTACTGGCCTTCAGGACTTGAATCTTGGAAAACAGATATATGGGGCTGTTGTTAAATTTGGGTATGATACGATATCAGTCACCGTGTCTAATTCTGTTATCCATTTACTTGGGAGGTGTGGTGGGAGTATTGATGATGTTTATAAACTGTTTGATAGAATTACTCAGAGAGATCAAGTTTCTTGGAATTCTTTGATAAATGCTCTTTGTAAATTTGAGAAGTGGGAGTTAGCATTGGAGGCTTTTAGGTTAATGGGGTTTGATGGATTTGAGGCTAGTTCGTTTACGTTGGTGAGCATTGCGCTTGCTTGTAGTAATTTGCCTAGGACTGATGGGTTGAGGCTTGGCAAGCAAGTACATGGGTATAGTTTGA</gDNA_template>
            <first_frame> V  H  S  L  L  P  L  F  L  F  L  F  N  N  N  P  I  H  L  P  K  I  H  Q  E  N  Y  F  Q  L  H  H  P  Q  V  H  S  F  S  R  N  F  N  K  N  T  P  Q  K  H  P  L  Q  L  H  G  S  I  L  F  G  L  K  Y  A  *  I  A  S  K  K  Q  S  L  H  I  Y  R  *  L  L  K  V  *  G  L  I  I  L  F  S  L  Q  F  *  K  L  L  L  A  F  R  T  *  I  L  E  N  R  Y  M  G  L  L  L  N  L  G  M  I  R  Y  Q  S  P  C  L  I  L  L  S  I  Y  L  G  G  V  V  G  V  L  M  M  F  I  N  C  L  I  E  L  L  R  E  I  K  F  L  G  I  L  *  *  M  L  F  V  N  L  R  S  G  S  *  H  W  R  L  L  G  *  W  G  L  M  D  L  R  L  V  R  L  R  W  *  A  L  R  L  L  V  V  I  C  L  G  L  M  G  *  G  L  A  S  K  Y  M  G  I  V  * </first_frame>
            <second_frame>  Y  T  L  C  F  P  C  F  C  S  S  S  T  T  I  Q  F  I  Y  P  K  S  T  K  K  T  T  F  N  F  I  T  H  K  Y  T  H  F  Q  E  I  S  T  R  T  H  L  R  N  T  L  F  S  F  M  D  R  Y  S  S  V  S  S  T  L  K  L  L  Q  R  S  N  L  Y  I  Y  T  D  D  F  *  R  C  K  A  *  *  F  C  F  P  C  S  S  E  S  C  Y  W  P  S  G  L  E  S  W  K  T  D  I  W  G  C  C  *  I  W  V  *  Y  D  I  S  H  R  V  *  F  C  Y  P  F  T  W  E  V  W  W  E  Y  *  *  C  L  *  T  V  *  *  N  Y  S  E  R  S  S  F  L  E  F  F  D  K  C  S  L  *  I  *  E  V  G  V  S  I  G  G  F  *  V  N  G  V  *  W  I  *  G  *  F  V  Y  V  G  E  H  C  A  C  L  *  *  F  A  *  D  *  W  V  E  A  W  Q  A  S  T  W  V  *  F   </second_frame>
            <third_frame>   T  L  S  A  S  P  V  S  V  P  L  Q  Q  Q  S  N  S  F  T  Q  N  P  P  R  K  L  L  S  T  S  S  P  T  S  T  L  I  F  K  K  F  Q  Q  E  H  T  S  E  T  P  S  S  A  S  W  I  D  T  L  R  S  Q  V  R  L  N  C  F  K  E  A  I  F  T  Y  I  Q  M  T  S  E  G  V  R  P  D  N  F  V  F  P  A  V  L  K  A  A  T  G  L  Q  D  L  N  L  G  K  Q  I  Y  G  A  V  V  K  F  G  Y  D  T  I  S  V  T  V  S  N  S  V  I  H  L  L  G  R  C  G  G  S  I  D  D  V  Y  K  L  F  D  R  I  T  Q  R  D  Q  V  S  W  N  S  L  I  N  A  L  C  K  F  E  K  W  E  L  A  L  E  A  F  R  L  M  G  F  D  G  F  E  A  S  S  F  T  L  V  S  I  A  L  A  C  S  N  L  P  R  T  D  G  L  R  L  G  K  Q  V  H  G  Y  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41279" stop="40620"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSASPVSVPLQQQSNSFTQNPPRKLLSTSSPTSTLIFKKFQQEHTSETPSSASWIDTLRSQVRLNCFKEAIFTYIQMTSEGVRPDNFVFPAVLKAATGLQDLNLGKQIYGAVVKFGYDTISVTVSNSVIHLLGRCGGSIDDVYKLFDRITQRDQVSWNSLINALCKFEKWELALEAFRLMGFDGFEASSFTLVSIALACSNLPRTDGLRLGKQVHGYSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="45186" PGL_stop="48737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45186" e_stop="45393"/>
            <exon e_start="46322" e_stop="46471"/>
            <exon e_start="46902" e_stop="47078"/>
            <exon e_start="47350" e_stop="47438"/>
            <exon e_start="47522" e_stop="47586"/>
            <exon e_start="47707" e_stop="47809"/>
            <exon e_start="48238" e_stop="48348"/>
            <exon e_start="48439" e_stop="48737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45186" e_stop="45393" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46322" e_stop="46471" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.972">
            <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46902" e_stop="47078" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.804">
            <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47350" e_stop="47438" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.936">
            <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47522" e_stop="47586" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.904" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47707" e_stop="47809" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48238" e_stop="48348" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48439" e_stop="48737" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45186" stop="45393"/>
              <exon start="46322" stop="46471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45190" stop="45393"/>
              <exon start="46322" stop="46471"/>
              <exon start="46902" stop="47078"/>
              <exon start="47350" stop="47438"/>
              <exon start="47522" stop="47586"/>
              <exon start="47707" stop="47809"/>
              <exon start="48238" stop="48348"/>
              <exon start="48439" stop="48737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45191" stop="45393"/>
              <exon start="46322" stop="46471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTGTGTGATTTGATGCTTCTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG : GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG : TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG : TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG : GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA : TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG : GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG : GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGTATTTCTTTTCATCATTGTGAATTGCATCAAGCCTGGCTT</gDNA_template>
            <first_frame> Q  V  C  D  L  M  L  L  N  P  N  M  V  P  I  I  K  I  F  *  K  K  E  E  R  I  F  N  S  H  R  V  M  A  E  V  I  G  A  P  A  A  A  Q  V  K  S  I  F  V  Y  P  I  K  S  C  R  G  I  S  V  S  Q  A  P  I  T  S  T   : G  F  R  W  D  R  Q  W  L  V  V  N  S  K  G  R  A  Y  T  Q  R  V  E  P  K  L  A  L  V  E  V  A  L  P  I  E  A  F  S  E  G  W  E  P  N  N  D  S  Y  L   : V  I  K  A  P  G  M  D  P  L  K  I  P  L  S  D  P  S  V  V  S  D  G  V  S  V  W  E  W  S  G  S  A  L  D  E  G  A  E  A  A  M  W  F  S  T  H  L  G  K  P  S  R  L  V  R  F  S  E   : V  K  E  M  R  V  V  D  P  N  Y  A  Q  G  Y  N  V  M  F  S  D  G  Y  P  Y  L  M  L  S  Q  :  G  S  M  N  A  L  N  S  L  L  K  E  P  V  P  V  N  R  F  R  P  N :   V  L  V  D  G  C  E  P  F  A  E  D  L  W  K  E  I  Q  I  N  K  L  T  F  E  G  V  K  L  C  S  R  C  K  :  V  P  T  I  N  Q  E  T  T  V  A  G  S  E  P  T  E  T  L  L  K  F  R  S  D  K  A  L  R  P  N  K  K  Q  Q  G  K  :  V  Y  F  G  Q  N  M  V  C  S  D  A  L  S  H  G  K  G  K  I  V  K  V  G  D  P  V  Y  V  H  K  V  V  P  S  S  A  E  A  P  A  *  T  L  V  V  L  S  L  *  C  K  M  C  I  *  I  R  *  S  Q  K  I  R  I  L  M  *  G  K  M  V  F  Q  A  N  A  K  *  I  Y  I  N  V  S  P  V  F  L  F  I  I  V  N  C  I  K  P  G   </first_frame>
            <second_frame>  K  C  V  I  *  C  F  S  I  Q  I  W  F  P  L  *  K  F  F  R  K  K  K  N  E  S  S  T  P  I  E  *  W  Q  K  *  *  E  R  Q  Q  Q  L  R  L  N  Q  S  L  Y  I  Q  L  N  H  A  V  E  F  L  F  L  K  H  L  S  L  L  L  :  D  F  D  G  I  D  N  G  *  W  *  I  P  K  A  G  P  I  L  K  E  L  N  Q  S  L  L  L  S  K  W  H  C  Q  L  R  P  F  L  K  A  G  N  Q  I  M  T  L  I  *  :  L  S  K  L  P  V  W  I  H  *  K  F  H  *  V  T  H  L  *  C  R  M  V  S  R  S  G  S  G  L  V  L  P  W  T  R  E  L  R  Q  L  C  G  S  P  H  I  W  G  N  Q  V  G  *  F  A  L  V  K  :  L  R  K  *  E  L  *  I  L  I  M  L  K  D  T  M  L  C  F  L  M  D  I  H  T  S  C  Y  P  R :   D  R  *  M  R  *  I  L  F  S  R  S  L  F  Q  *  I  V  L  D  P   : M  S  L  L  M  D  V  N  H  L  L  R  I  C  G  R  R  S  K  S  I  S  *  H  L  R  V  S  N  Y  A  L  A  V  R :   Y  L  P  *  I  K  K  Q  Q  *  Q  A  L  S  Q  Q  K  L  S  *  N  S  D  P  I  R  P  C  V  R  I  R  N  N  K  G  R :   Y  I  L  D  R  T  W  F  V  P  T  L  L  A  M  E  K  A  R  *  S  R  L  G  I  L  F  M  S  I  R  L  F  L  L  V  L  R  L  Q  L  E  L  *  L  F  Y  H  C  N  V  K  C  A  S  E  *  G  D  P  K  R  *  E  Y  *  C  K  E  K  W  S  S  R  P  M  L  N  K  S  T  *  T  F  R  L  Y  F  F  S  S  L  *  I  A  S  S  L  A  </second_frame>
            <third_frame>   S  V  *  F  D  A  S  Q  S  K  Y  G  S  H  Y  K  N  F  L  E  K  R  R  T  N  L  Q  L  P  *  S  D  G  R  S  N  R  S  A  S  S  S  S  G  *  I  N  L  C  I  S  N  *  I  M  P  W  N  F  C  F  S  S  T  Y  H  F  Y  W :   I  S  M  G  S  T  M  V  S  G  E  F  Q  R  Q  G  L  Y  S  K  S  *  T  K  A  C  S  C  R  S  G  I  A  N  *  G  L  F  *  R  L  G  T  K  *  *  L  L  S  S :   Y  Q  S  S  R  Y  G  S  T  E  N  S  T  K  *  P  I  C  S  V  G  W  C  L  G  L  G  V  V  W  F  C  L  G  R  G  S  *  G  S  Y  V  V  L  H  T  S  G  E  T  K  S  A  S  S  L  *  *  S :   *  G  N  E  S  C  R  S  *  L  C  S  R  I  Q  C  Y  V  F  *  W  I  S  I  P  H  A  I  P   : G  I  D  E  C  V  K  F  S  S  Q  G  A  C  S  S  K  S  F  *  T  Q  :  C  P  C  *  W  M  *  T  I  C  *  G  F  V  E  G  D  P  N  Q  *  V  N  I  *  G  C  Q  T  M  L  S  L  *   : G  T  Y  H  K  S  R  N  N  S  S  R  L  *  A  N  R  N  S  L  E  I  P  I  R  *  G  L  A  S  E  *  E  T  T  R  E   : G  I  F  W  T  E  H  G  L  F  R  R  S  *  P  W  K  R  Q  D  S  Q  G  W  G  S  C  L  C  P  *  G  C  S  F  *  C  *  G  S  S  L  N  S  S  C  S  I  T  V  M  *  N  V  H  L  N  K  V  I  P  K  D  K  N  T  N  V  R  K  N  G  L  P  G  Q  C  *  I  N  L  H  K  R  F  A  C  I  S  F  H  H  C  E  L  H  Q  A  W  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45246" stop="45393"/>
                    <exon start="46322" stop="46471"/>
                    <exon start="46902" stop="47078"/>
                    <exon start="47350" stop="47438"/>
                    <exon start="47522" stop="47586"/>
                    <exon start="47707" stop="47809"/>
                    <exon start="48238" stop="48348"/>
                    <exon start="48439" stop="48564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEERIFNSHRVMAEVIGAPAAAQVKSIFVYPIKSCRGISVSQAPITSTGFRWDRQWLVVNSKGRAYTQRVEPKLALVEVALPIEAFSEGWEPNNDSYLVIKAPGMDPLKIPLSDPSVVSDGVSVWEWSGSALDEGAEAAMWFSTHLGKPSRLVRFSEVKEMRVVDPNYAQGYNVMFSDGYPYLMLSQGSMNALNSLLKEPVPVNRFRPNVLVDGCEPFAEDLWKEIQINKLTFEGVKLCSRCKVPTINQETTVAGSEPTETLLKFRSDKALRPNKKQQGKVYFGQNMVCSDALSHGKGKIVKVGDPVYVHKVVPSSAEAPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47428" e_stop="47809"/>
            <exon e_start="48238" e_stop="48348"/>
            <exon e_start="48439" e_stop="48697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="0.935"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="0.991"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="47428" e_stop="47809" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="48238" e_stop="48348" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="48439" e_stop="48697" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47428" stop="47809"/>
              <exon start="48238" stop="48348"/>
              <exon start="48439" stop="48697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587043" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG : GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG : GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTG</gDNA_template>
            <first_frame> C  Y  P  R  *  V  N  R  H  L  N  S  A  *  T  S  I  E  Q  E  L  R  L  D  F  L  G  P  C  S  A  G  I  D  E  C  V  K  F  S  S  Q  G  A  C  S  S  K  S  F  *  T  Q  V  Y  S  S  Y  L  Y  N  L  F  M  I  G  Y  F  L  S  F  F  C  T  N  C  *  Y  F  R  L  T  Q  L  N  F  *  H  Y  L  L  S  Q  C  P  C  *  W  M  *  T  I  C  *  G  F  V  E  G  D  P  N  Q  *  V  N  I  *  G  C  Q  T  M  L  S  L  *   : G  T  Y  H  K  S  R  N  N  S  S  R  L  *  A  N  R  N  S  L  E  I  P  I  R  *  G  L  A  S  E  *  E  T  T  R  E   : G  I  F  W  T  E  H  G  L  F  R  R  S  *  P  W  K  R  Q  D  S  Q  G  W  G  S  C  L  C  P  *  G  C  S  F  *  C  *  G  S  S  L  N  S  S  C  S  I  T  V  M  *  N  V  H  L  N  K  V  I  P  K  D  K  N  T  N  V  R  K  N  G  L  P  G  Q  C  *  I  N  L  H  K  R  F  A   </first_frame>
            <second_frame>  A  I  P  G  K  *  I  V  I  *  I  Q  P  K  H  P  *  N  K  S  L  G  *  I  F  L  V  H  V  L  Q  G  S  M  N  A  L  N  S  L  L  K  E  P  V  P  V  N  R  F  R  P  K  Y  T  R  P  T  C  I  I  C  L  *  L  V  T  S  F  P  F  S  V  Q  T  V  S  T  L  D  *  L  S  *  I  F  D  I  I  F  F  H  S  V  L  V  D  G  C  E  P  F  A  E  D  L  W  K  E  I  Q  I  N  K  L  T  F  E  G  V  K  L  C  S  R  C  K  :  V  P  T  I  N  Q  E  T  T  V  A  G  S  E  P  T  E  T  L  L  K  F  R  S  D  K  A  L  R  P  N  K  K  Q  Q  G  K  :  V  Y  F  G  Q  N  M  V  C  S  D  A  L  S  H  G  K  G  K  I  V  K  V  G  D  P  V  Y  V  H  K  V  V  P  S  S  A  E  A  P  A  *  T  L  V  V  L  S  L  *  C  K  M  C  I  *  I  R  *  S  Q  K  I  R  I  L  M  *  G  K  M  V  F  Q  A  N  A  K  *  I  Y  I  N  V  S  P  </second_frame>
            <third_frame>   L  S  Q  V  S  K  S  S  F  K  F  S  L  N  I  H  R  T  R  A  *  A  R  F  S  W  S  M  F  C  R  D  R  *  M  R  *  I  L  F  S  R  S  L  F  Q  *  I  V  L  D  P  S  I  L  V  L  L  V  *  F  V  Y  D  W  L  L  P  F  L  F  L  Y  K  L  L  V  L  *  I  N  S  V  K  F  L  T  L  S  S  F  T  V  S  L  L  M  D  V  N  H  L  L  R  I  C  G  R  R  S  K  S  I  S  *  H  L  R  V  S  N  Y  A  L  A  V  R :   Y  L  P  *  I  K  K  Q  Q  *  Q  A  L  S  Q  Q  K  L  S  *  N  S  D  P  I  R  P  C  V  R  I  R  N  N  K  G  R :   Y  I  L  D  R  T  W  F  V  P  T  L  L  A  M  E  K  A  R  *  S  R  L  G  I  L  F  M  S  I  R  L  F  L  L  V  L  R  L  Q  L  E  L  *  L  F  Y  H  C  N  V  K  C  A  S  E  *  G  D  P  K  R  *  E  Y  *  C  K  E  K  W  S  S  R  P  M  L  N  K  S  T  *  T  F  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47681" stop="47809"/>
                    <exon start="48238" stop="48348"/>
                    <exon start="48439" stop="48564"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFDIIFFHSVLVDGCEPFAEDLWKEIQINKLTFEGVKLCSRCKVPTINQETTVAGSEPTETLLKFRSDKALRPNKKQQGKVYFGQNMVCSDALSHGKGKIVKVGDPVYVHKVVPSSAEAPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="61388" PGL_stop="62217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61388" e_stop="62217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="61388" e_stop="62217" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61388" stop="62217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGAAATTAACTATCTAAGTCGAGAAAAAGAGAGCCCCACCCCTTCCGCTTCCGTTTTTCTGCCCTACTCCCGCTACCCTCCTCGCTGTTTTCATCTTCCTCATCAGCGTCTCTCAGAGACCTCCTTCATTTTGTTGAGCCTAAAAGATTCTTATATTTAAGGTTTAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTTGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTTAAAGTTACCCTAAAACCCAACTTGGGTTCTTGTGAAACTGAAGTGGAAGTACCAATTTCAGACAAGCTATTTAAAGAGGCTCCAAAGTTGGGTTCTTTCAAATTGGGTGATTCTACATTCTATTCTCTTATTGAGAAGTATGCTAATTCCGAGGACTTTACGTCTTTGGAGAAGGTTTTTGGTAGAATGAAGTGTGAAAAAAGAGTCTTTATTGAGAAGAGTTTTATCTTAGTGTTTAGAGCTTATGGAAAAGCCCGTTTGCCTGAAAAAGCTGTTGAGTTGTTTGAAAGA</gDNA_template>
            <first_frame> I  *  N  *  L  S  K  S  R  K  R  E  P  H  P  F  R  F  R  F  S  A  L  L  P  L  P  S  S  L  F  S  S  S  S  S  A  S  L  R  D  L  L  H  F  V  E  P  K  R  F  L  Y  L  R  F  K  P  C  I  D  D  H  Y  Q  K  F  L  F  F  F  M  R  I  *  V  E  K  A  C  S  F  T  P  S  V  P  N  S  S  L  Q  S  *  S  H  V  S  L  S  L  T  S  P  L  T  V  Y  S  Q  L  Y  L  T  L  L  I  L  T  K  N  L  K  *  T  I  Q  F  L  L  *  K  L  K  W  D  Y  P  N  *  V  L  V  E  L  K  W  K  Y  P  Y  L  I  T  Q  *  R  L  P  Q  Y  L  S  L  I  L  V  *  L  K  *  K  N  P  F  L  I  N  H  L  K  L  P  *  N  P  T  W  V  L  V  K  L  K  W  K  Y  Q  F  Q  T  S  Y  L  K  R  L  Q  S  W  V  L  S  N  W  V  I  L  H  S  I  L  L  L  R  S  M  L  I  P  R  T  L  R  L  W  R  R  F  L  V  E  *  S  V  K  K  E  S  L  L  R  R  V  L  S  *  C  L  E  L  M  E  K  P  V  C  L  K  K  L  L  S  C  L  K   </first_frame>
            <second_frame>  Y  E  I  N  Y  L  S  R  E  K  E  S  P  T  P  S  A  S  V  F  L  P  Y  S  R  Y  P  P  R  C  F  H  L  P  H  Q  R  L  S  E  T  S  F  I  L  L  S  L  K  D  S  Y  I  *  G  L  N  P  A  *  M  I  I  I  R  S  F  C  F  S  S  *  E  S  E  L  K  R  H  A  L  L  L  L  P  Y  Q  T  V  H  F  K  A  N  P  M  *  V  F  L  *  L  H  H  *  P  C  I  L  S  S  I  *  P  F  S  Y  *  P  R  T  *  N  R  L  F  N  F  Y  F  E  N  *  N  G  T  T  Q  I  E  F  L  W  N  *  N  G  N  T  H  I  *  *  L  N  E  D  C  P  N  T  *  V  *  F  L  C  N  *  S  R  R  T  P  F  *  *  I  I  *  S  Y  P  K  T  Q  L  G  F  L  *  N  *  S  G  S  T  N  F  R  Q  A  I  *  R  G  S  K  V  G  F  F  Q  I  G  *  F  Y  I  L  F  S  Y  *  E  V  C  *  F  R  G  L  Y  V  F  G  E  G  F  W  *  N  E  V  *  K  K  S  L  Y  *  E  E  F  Y  L  S  V  *  S  L  W  K  S  P  F  A  *  K  S  C  *  V  V  *  K  </second_frame>
            <third_frame>   M  K  L  T  I  *  V  E  K  K  R  A  P  P  L  P  L  P  F  F  C  P  T  P  A  T  L  L  A  V  F  I  F  L  I  S  V  S  Q  R  P  P  S  F  C  *  A  *  K  I  L  I  F  K  V  *  T  L  H  R  *  S  L  S  E  V  F  V  F  L  H  E  N  L  S  *  K  G  M  L  F  Y  S  F  R  T  K  Q  F  T  S  K  L  I  P  C  K  S  F  S  N  F  T  I  N  R  V  F  S  A  L  S  N  P  S  H  T  D  Q  E  P  E  I  D  Y  S  I  S  T  L  K  T  E  M  G  L  P  K  L  S  S  C  G  T  E  M  E  I  P  I  S  D  N  S  M  K  I  A  P  I  P  K  F  N  S  C  V  T  E  V  E  E  P  L  S  D  K  S  F  K  V  T  L  K  P  N  L  G  S  C  E  T  E  V  E  V  P  I  S  D  K  L  F  K  E  A  P  K  L  G  S  F  K  L  G  D  S  T  F  Y  S  L  I  E  K  Y  A  N  S  E  D  F  T  S  L  E  K  V  F  G  R  M  K  C  E  K  R  V  F  I  E  K  S  F  I  L  V  F  R  A  Y  G  K  A  R  L  P  E  K  A  V  E  L  F  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61618" stop="62217"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGMLFYSFRTKQFTSKLIPCKSFSNFTINRVFSALSNPSHTDQEPEIDYSISTLKTEMGLPKLSSCGTEMEIPISDNSMKIAPIPKFNSCVTEVEEPLSDKSFKVTLKPNLGSCETEVEVPISDKLFKEAPKLGSFKLGDSTFYSLIEKYANSEDFTSLEKVFGRMKCEKRVFIEKSFILVFRAYGKARLPEKAVELFER</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61400" stop="61612"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSKSRKREPHPFRFRFSALLPLPSSLFSSSSSASLRDLLHFVEPKRFLYLRFKPCIDDHYQKFLFFFMRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="74426" PGL_stop="69633"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74382" e_stop="73843"/>
            <exon e_start="73771" e_stop="73709"/>
            <exon e_start="73590" e_stop="73522"/>
            <exon e_start="73464" e_stop="73372"/>
            <exon e_start="71959" e_stop="71855"/>
            <exon e_start="71767" e_stop="71239"/>
            <exon e_start="70589" e_stop="70484"/>
            <exon e_start="70167" e_stop="69633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.516" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.741" e_score="0.986"/>
          <exon-intron don_prob="0.827" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74382" e_stop="73843" e_length="540"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.516">
            <gDNA_intron_boundary i_start="73842" i_stop="73772" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73771" e_stop="73709" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73708" i_stop="73591" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="73590" e_stop="73522" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.741">
            <gDNA_intron_boundary i_start="73521" i_stop="73465" i_length="57"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73464" e_stop="73372" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.827" acc_prob="0.972">
            <gDNA_intron_boundary i_start="73371" i_stop="71960" i_length="1412"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71959" e_stop="71855" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.842">
            <gDNA_intron_boundary i_start="71854" i_stop="71768" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71767" e_stop="71239" e_length="529"/>
          </exon>
          <intron i_serial="6" don_prob="0.882" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70589" e_stop="70484" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.915" acc_prob="0.843">
            <gDNA_intron_boundary i_start="70483" i_stop="70168" i_length="316"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="70167" e_stop="69633" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74382" stop="73843"/>
              <exon start="73771" stop="73709"/>
              <exon start="73590" stop="73522"/>
              <exon start="73464" stop="73372"/>
              <exon start="71959" stop="71855"/>
              <exon start="71767" stop="71239"/>
              <exon start="70589" stop="70565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71399" stop="71239"/>
              <exon start="70589" stop="70484"/>
              <exon start="70167" stop="69633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585028" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG : AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG : ATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAG : ATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA : GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG : GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG : GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG : GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGG</gDNA_template>
            <first_frame> N  L  K  P  L  K  T  P  G  T  *  L  K  R  F  A  K  L  I  A  K  F  C  *  L  G  F  K  L  H  M  C  T  D  Q  *  V  V  T  N  A  L  S  *  *  F  Q  A  C  L  P  D  V  *  *  N  S  C  E  N  T  S  R  F  *  S  N  *  T  Y  V  C  M  Y  H  I  T  *  F  L  F  C  F  H  M  L  M  *  K  W  W  D  R  I  K  L  S  *  G  V  C  L  K  F  Y  P  R  *  S  F  A  V  Y  M  V  L  N  F  I  P  T  T  K  M  R  F  F  L  L  P  S  F  G  *  *  I  P  L  M  V  L  F  D  Q  E  V  L  *  N  T  A  I  V  H  C  *  Q  I  H  C  *  T  S  M  T  D  Y  I  I  G  V  S  D  P  R  Q  W  H  S  E  :  N  L  K  L  N  K  D  H  Y  A  S  C  L  I  R  L  G  G  A  R  M  :  I  T  D  I  A  N  D  I  G  V  G  V  H  F  N  P  F  V  S  C  N  N  K  :  M  F  K  Y  G  V  V  R  M  H  D  L  I  Q  D  I  L  G  W  E  R  F  Y  L  S  G  R  L  Q  K  P  :  V  N  I  L  T  D  N  L  D  I  K  S  V  N  S  V  N  L  K  A  A  T  S  A  A  L  L  L  L  P  S  K  F  T  E  :  E  D  L  Y  A  K  I  C  S  L  S  Y  T  G  D  L  R  M  L  F  A  E  D  K  N  K  V  D  L  T  F  E  W  V  *  I  L  K  F  C  G  P  D  C  T  T  W  K  Y  Q  S  T  S  K  F  I  V  *  L  G  S  F  S  I  L  *  F  Y  I  T  S  S  G  S  M  N  I  S  *  F  A  S  H  I  Y  K  I  S  F  L  D  *  N  L  N  L  N  F  *  H  S  I  S  *  C  I  G  N  F  H  A  T  L  I  D  *  I  D  S  S  I  P  C  T  *  I  S  S  L  H  I  D  P  G  E  Q  N  C  T  R  T  V  P  F  I  *  G  N  V  *  A  I  S  G  R  I  R  G  Q  K  L  V  E  I  F  S  S  W  *  *  A  S  K  H  I  S   : G  L  W  I  I  C  C  F  H  L  G  F  F  S  S  F  I  N  Q  K  *  D  G  H  E  T  W  R  K  E  N  S  G  *  L  W :   *  S  *  T  T  N  S  D  W  F  K  R  T  G  C  *  V  H  A  E  A  S  *  T  K  G  Y  V  F  *  H  K  A  G  C  C  R  F  I  D  C  W  C  C  S  W  S  Q  I  C  S  K  Q  D  A  Q  G  L  E  I  L  G  V  I  V  S  C  F  W  V  T  S  R  L  L  T  G  S  D  M  G  I  *  P  Q  P  Q  L  H  L  M  T  C  G  S  T  M  E  F  L  A  W  I  E  F  A  D  S  P  A  A  F  S  K  *  D  K  *  N  L  R  G  E  I  T  N  N  P  S  K  N  F  F  *  K  F  S  V  H  L  Y  S  F  L  L  F  I  S  K  V  G  R  V  L  Q  G  R  S  S  C  C  M  F  R  T  S  W  *  K  E  V  N  Q  C  F  *  T  R </first_frame>
            <second_frame>  T  L  N  P  *  K  P  Q  E  L  N  *  K  D  L  P  N  *  *  L  N  F  V  N  *  G  S  N  C  T  C  V  L  I  S  K  W  *  P  M  H  Y  L  N  N  F  K  R  V  F  Q  M  F  D  K  I  P  V  R  I  L  Q  D  F  D  P  I  E  H  M  F  V  C  T  I  L  H  D  F  C  F  V  F  I  C  *  C  R  N  G  G  T  G  *  S  *  A  R  G  F  A  *  N  S  T  P  G  R  V  L  L  Y  I  W  F  *  T  S  S  Q  Q  Q  R  *  G  F  F  Y  F  L  L  S  D  N  E  F  H  S  W  F  Y  L  I  K  K  F  Y  K  I  L  Q  *  Y  I  A  N  K  F  I  A  R  H  L  *  Q  I  T  L  L  E  Y  L  I  L  D  N  G  I  L  R :   I  *  N  *  T  R  I  T  M  L  R  V  S  F  A  L  V  E  Q  G  * :   *  L  I  L  Q  M  T  L  V  L  A  Y  T  S  T  H  L  C  L  A  T  T  R :   C  S  S  M  E  L  Y  G  C  M  T  *  F  K  T  Y  W  D  G  R  G  F  I  S  A  V  V  C  R  N  Q :   *  T  F  L  R  I  T  W  I  *  K  A  *  T  A  *  I  *  K  L  Q  L  L  L  L  F  S  F  C  H  L  N  S  R  R :   K  I  Y  M  P  K  S  V  A  S  H  I  Q  V  T  C  V  C  F  L  Q  R  T  K  I  R  *  I  *  H  L  S  G  F  K  F  *  N  F  V  A  L  T  V  P  H  G  S  I  N  L  Q  V  S  L  *  C  N  W  V  V  S  Q  F  Y  S  F  I  L  L  P  A  D  Q  *  I  S  V  N  L  H  L  I  S  T  K  Y  P  F  W  T  R  I  *  I  S  T  F  S  I  V  S  H  S  A  L  A  T  F  M  P  H  *  L  I  E  L  I  L  P  F  R  V  H  E  F  L  H  C  I  L  I  Q  V  N  K  I  V  Q  G  Q  F  H  L  F  E  E  M  Y  K  P  F  L  E  E  Y  E  A  K  N  L  L  R  F  S  V  A  G  D  K  Q  V  N  I  F  Q  :  D  C  G  L  S  A  A  S  T  L  V  S  S  L  P  S  S  I  R  S  E  M  A  M  K  L  G  E  K  R  I  L  D  D  S   : G  R  V  R  Q  Q  I  V  I  G  S  K  E  Q  A  A  E  C  M  Q  R  L  V  R  R  K  V  M  F  S  S  T  R  Q  A  V  A  G  L  L  T  A  G  A  V  H  G  V  R  Y  V  A  N  K  M  R  K  A  W  K  S  W  V  *  L  F  P  V  F  G  *  H  H  V  F  *  L  V  Q  T  W  G  Y  S  H  N  H  S  Y  T  *  *  H  A  V  Q  P  W  S  S  *  H  G  *  S  L  P  T  L  L  L  L  F  Q  N  K  T  N  R  I  *  G  G  K  *  P  T  T  H  Q  K  I  S  S  E  S  F  L  F  T  C  I  L  F  F  Y  L  F  Q  R  W  E  E  F  F  R  E  G  R  A  V  V  C  L  E  H  P  G  E  K  K  L  I  N  V  S  K  Q   </second_frame>
            <third_frame>   P  *  T  L  E  N  P  R  N  L  I  E  K  I  C  Q  I  D  S  *  I  L  L  I  R  V  Q  I  A  H  V  Y  *  S  V  S  G  N  Q  C  I  I  L  I  I  S  S  V  S  S  R  C  L  I  K  F  L  *  E  Y  F  K  I  L  I  Q  L  N  I  C  L  Y  V  P  Y  Y  M  I  F  V  L  F  S  Y  V  N  V  E  M  V  G  Q  D  K  A  E  L  G  G  L  L  E  I  L  P  P  V  E  F  C  C  I  Y  G  S  K  L  H  P  N  N  K  D  E  V  F  S  T  S  F  F  R  I  M  N  S  T  H  G  F  I  *  S  R  S  S  I  K  Y  C  N  S  T  L  L  T  N  S  L  L  D  I  Y  D  R  L  H  Y  W  S  I  *  S  S  T  M  A  F  *   : E  S  K  I  E  Q  G  S  L  C  F  V  S  H  S  P  W  W  S  K  D   : D  N  *  Y  C  K  *  H  W  C  W  R  T  L  Q  P  I  C  V  L  Q  Q  Q   : D  V  Q  V  W  S  C  T  D  A  *  L  D  S  R  H  I  G  M  G  E  V  L  S  Q  R  S  F  A  E  T   : S  E  H  S  Y  G  *  L  G  Y  K  K  R  E  Q  R  E  S  E  S  C  N  F  C  C  S  S  P  F  A  I  *  I  H  G   : G  R  F  I  C  Q  N  L  *  P  L  I  Y  R  *  L  A  Y  A  F  C  R  G  Q  K  *  G  R  F  D  I  *  V  G  L  N  F  K  I  L  W  P  *  L  Y  H  M  E  V  S  I  Y  K  *  V  Y  S  V  I  G  *  F  L  N  F  I  V  L  Y  Y  F  Q  R  I  N  E  Y  Q  L  I  C  I  S  Y  L  Q  N  I  L  F  G  L  E  F  E  S  Q  L  L  A  *  Y  L  I  V  H  W  Q  L  S  C  H  I  N  *  L  N  *  F  F  H  S  V  Y  M  N  F  F  I  A  Y  *  S  R  *  T  K  L  Y  K  D  S  S  I  Y  L  R  K  C  I  S  H  F  W  K  N  T  R  P  K  T  C  *  D  F  Q  *  L  V  I  S  K  *  T  Y  F  R :   I  V  D  Y  L  L  L  P  P  W  F  L  L  F  L  H  Q  S  E  V  R  W  P  *  N  L  E  K  R  E  F  W  M  T  L  :  V  E  L  D  N  K  *  *  L  V  Q  K  N  R  L  L  S  A  C  R  G  *  L  D  E  R  L  C  F  L  A  Q  G  R  L  L  Q  V  Y  *  L  L  V  L  F  M  E  S  D  M  *  Q  T  R  C  A  R  L  G  N  L  G  C  N  C  F  L  F  L  G  D  I  T  S  F  N  W  F  R  H  G  D  I  A  T  T  T  V  T  P  N  D  M  R  F  N  H  G  V  L  S  M  D  R  V  C  R  L  S  C  C  F  F  K  I  R  Q  I  E  F  E  G  G  N  N  Q  Q  P  I  K  K  F  L  L  K  V  F  C  S  L  V  F  F  S  F  I  Y  F  K  G  G  K  S  S  S  G  K  V  E  L  L  Y  V  *  N  I  L  V  K  R  S  *  S  M  F  L  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73899" stop="73843"/>
                    <exon start="73771" stop="73709"/>
                    <exon start="73590" stop="73522"/>
                    <exon start="73464" stop="73372"/>
                    <exon start="71959" stop="71855"/>
                    <exon start="71767" stop="71663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSMTDYIIGVSDPRQWHSENLKLNKDHYASCLIRLGGARMITDIANDIGVGVHFNPFVSCNNKMFKYGVVRMHDLIQDILGWERFYLSGRLQKPVNILTDNLDIKSVNSVNLKAATSAALLLLPSKFTEEDLYAKICSLSYTGDLRMLFAEDKNKVDLTFEWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71427" stop="71239"/>
                    <exon start="70589" stop="70484"/>
                    <exon start="70167" stop="69977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIELILPFRVHEFLHCILIQVNKIVQGQFHLFEEMYKPFLEEYEAKNLLRFSVAGDKQVNIFQDCGLSAASTLVSSLPSSIRSEMAMKLGEKRILDDSGRVRQQIVIGSKEQAAECMQRLVRRKVMFSSTRQAVAGLLTAGAVHGVRYVANKMRKAWKSWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74206" stop="73955"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYFKILIQLNICLYVPYYMIFVLFSYVNVEMVGQDKAELGGLLEILPPVEFCCIYGSKLHPNNKDEVFSTSFFRIMNSTHGFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74426" e_stop="74009"/>
            <exon e_start="73899" e_stop="73843"/>
            <exon e_start="73771" e_stop="73709"/>
            <exon e_start="73590" e_stop="73423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.917" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.516" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74426" e_stop="74009" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.917" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74008" i_stop="73900" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73899" e_stop="73843" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.516">
            <gDNA_intron_boundary i_start="73842" i_stop="73772" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73771" e_stop="73709" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73708" i_stop="73591" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="73590" e_stop="73423" e_length="168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74426" stop="74009"/>
              <exon start="73899" stop="73843"/>
              <exon start="73771" stop="73709"/>
              <exon start="73590" stop="73423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATCTGTTGCTTCTTCTTCTTCAATGGCAGTCTCAATCATCCCAACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAG : ACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG : AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG : ATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAGGTAAATGAAGATGCACTTTCTTTTAACACATCAGTAATTTAAGATTAACTTTTACAGATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAA</gDNA_template>
            <first_frame> G  S  V  A  S  S  S  S  M  A  V  S  I  I  P  T  L  N  P  *  K  P  Q  E  L  N  *  K  D  L  P  N  *  *  L  N  F  V  N  *  G  S  N  C  T  C  V  L  I  S  K  W  *  P  M  H  Y  L  N  N  F  K  R  V  F  Q  M  F  D  K  I  P  V  R  I  L  Q  D  F  D  P  I  E  H  M  F  V  C  T  I  L  H  D  F  C  F  V  F  I  C  *  C  R  N  G  G  T  G  *  S  *  A  R  G  F  A  *  N  S  T  P  G  R  V  L  L  Y  I  W  F  *  T  S  S  Q  Q  Q  R  *   : D  I  Y  D  R  L  H  Y  W  S  I  *  S  S  T  M  A  F  *   : E  S  K  I  E  Q  G  S  L  C  F  V  S  H  S  P  W  W  S  K  D   : D  N  *  Y  C  K  *  H  W  C  W  R  T  L  Q  P  I  C  V  L  Q  Q  Q  G  K  *  R  C  T  F  F  *  H  I  S  N  L  R  L  T  F  T  D  V  Q  V  W  S  C  T  D  A  *  L  D  S  </first_frame>
            <second_frame>  D  L  L  L  L  L  L  Q  W  Q  S  Q  S  S  Q  P  *  T  L  E  N  P  R  N  L  I  E  K  I  C  Q  I  D  S  *  I  L  L  I  R  V  Q  I  A  H  V  Y  *  S  V  S  G  N  Q  C  I  I  L  I  I  S  S  V  S  S  R  C  L  I  K  F  L  *  E  Y  F  K  I  L  I  Q  L  N  I  C  L  Y  V  P  Y  Y  M  I  F  V  L  F  S  Y  V  N  V  E  M  V  G  Q  D  K  A  E  L  G  G  L  L  E  I  L  P  P  V  E  F  C  C  I  Y  G  S  K  L  H  P  N  N  K  D  E  :  T  S  M  T  D  Y  I  I  G  V  S  D  P  R  Q  W  H  S  E  :  N  L  K  L  N  K  D  H  Y  A  S  C  L  I  R  L  G  G  A  R  M  :  I  T  D  I  A  N  D  I  G  V  G  V  H  F  N  P  F  V  S  C  N  N  K  V  N  E  D  A  L  S  F  N  T  S  V  I  *  D  *  L  L  Q  M  F  K  Y  G  V  V  R  M  H  D  L  I  Q </second_frame>
            <third_frame>   I  C  C  F  F  F  F  N  G  S  L  N  H  P  N  L  K  P  L  K  T  P  G  T  *  L  K  R  F  A  K  L  I  A  K  F  C  *  L  G  F  K  L  H  M  C  T  D  Q  *  V  V  T  N  A  L  S  *  *  F  Q  A  C  L  P  D  V  *  *  N  S  C  E  N  T  S  R  F  *  S  N  *  T  Y  V  C  M  Y  H  I  T  *  F  L  F  C  F  H  M  L  M  *  K  W  W  D  R  I  K  L  S  *  G  V  C  L  K  F  Y  P  R  *  S  F  A  V  Y  M  V  L  N  F  I  P  T  T  K  M  R :   H  L  *  Q  I  T  L  L  E  Y  L  I  L  D  N  G  I  L  R :   I  *  N  *  T  R  I  T  M  L  R  V  S  F  A  L  V  E  Q  G  * :   *  L  I  L  Q  M  T  L  V  L  A  Y  T  S  T  H  L  C  L  A  T  T  R  *  M  K  M  H  F  L  L  T  H  Q  *  F  K  I  N  F  Y  R  C  S  S  M  E  L  Y  G  C  M  T  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74206" stop="74009"/>
                    <exon start="73899" stop="73843"/>
                    <exon start="73771" stop="73709"/>
                    <exon start="73590" stop="73480"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYFKILIQLNICLYVPYYMIFVLFSYVNVEMVGQDKAELGGLLEILPPVEFCCIYGSKLHPNNKDETSMTDYIIGVSDPRQWHSENLKLNKDHYASCLIRLGGARMITDIANDIGVGVHFNPFVSCNNKVNEDALSFNTSVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="79488" PGL_stop="82906"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79488" e_stop="79628"/>
            <exon e_start="82035" e_stop="82335"/>
            <exon e_start="82526" e_stop="82732"/>
            <exon e_start="82871" e_stop="82906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="0.993"/>
          <exon-intron don_prob="0.628" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="79488" e_stop="79628" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="79629" i_stop="82034" i_length="2406"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82035" e_stop="82335" e_length="301"/>
          </exon>
          <intron i_serial="2" don_prob="0.628" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82336" i_stop="82525" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82526" e_stop="82732" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="82733" i_stop="82870" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82871" e_stop="82906" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79488" stop="79628"/>
              <exon start="82035" stop="82335"/>
              <exon start="82526" stop="82732"/>
              <exon start="82871" stop="82906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATTTAATTGTATCTGAGCTAAAATAGGCTTCAAAATGAATTGAATATACACATAAACTGCTTCAAGAATCTAGCTTTATTTGAAAAGATAGCAATTTTATTGAAGCCCATTCTCTTTTTCATCCATTTCAGCTTCTGG : GACTGTAACACACAGGGTAGAGTTTTCTGTACAGTCATTTACAATGTCAATTTTAACGAAGTTACGCTGCATCACACTTGATGTTACCGGTACACTGATTGCTTACAAAGGAGAGTTGGGTGACTATTATTGCATGGCTGCCAAAGCTGCTGGGCAGCAATGTCCTGACTATAAGCGGGTTCATGAAGGTTTTAAACTAGCATATACAGAAATGGCAAAGAAGCATTCATGTTTTGGATTTGCTGAAAAGATTCCTAACATTGTTTGGTGGAAGACTTGTGTCAGGAATTCCTTTGTTCAG : GCAGGTTATGAATATGATGATGAGACATTTGAGAAGATATTTAGACGCATATATGCAACTTTTGGTTCTTCTGCACCTTACAACATATTTCCTGATGCTATACCGTTCCTCAGATGGCTCCGCGAGAGGGGCGTTACAGTTGGGTTGGTCAGCAATGCTGAGTATCGATATCAGGATGTGATTCTTCCTGCATTAGGCTTGAATCAG : GGATCTGAGTGGGATTTCGGCGTATTTTCCGGTCTT</gDNA_template>
            <first_frame> Y  I  *  L  Y  L  S  *  N  R  L  Q  N  E  L  N  I  H  I  N  C  F  K  N  L  A  L  F  E  K  I  A  I  L  L  K  P  I  L  F  F  I  H  F  S  F  W  :  D  C  N  T  Q  G  R  V  F  C  T  V  I  Y  N  V  N  F  N  E  V  T  L  H  H  T  *  C  Y  R  Y  T  D  C  L  Q  R  R  V  G  *  L  L  L  H  G  C  Q  S  C  W  A  A  M  S  *  L  *  A  G  S  *  R  F  *  T  S  I  Y  R  N  G  K  E  A  F  M  F  W  I  C  *  K  D  S  *  H  C  L  V  E  D  L  C  Q  E  F  L  C  S   : G  R  L  *  I  *  *  *  D  I  *  E  D  I  *  T  H  I  C  N  F  W  F  F  C  T  L  Q  H  I  S  *  C  Y  T  V  P  Q  M  A  P  R  E  G  R  Y  S  W  V  G  Q  Q  C  *  V  S  I  S  G  C  D  S  S  C  I  R  L  E  S   : G  I  *  V  G  F  R  R  I  F  R  S  </first_frame>
            <second_frame>  T  F  N  C  I  *  A  K  I  G  F  K  M  N  *  I  Y  T  *  T  A  S  R  I  *  L  Y  L  K  R  *  Q  F  Y  *  S  P  F  S  F  S  S  I  S  A  S  G :   T  V  T  H  R  V  E  F  S  V  Q  S  F  T  M  S  I  L  T  K  L  R  C  I  T  L  D  V  T  G  T  L  I  A  Y  K  G  E  L  G  D  Y  Y  C  M  A  A  K  A  A  G  Q  Q  C  P  D  Y  K  R  V  H  E  G  F  K  L  A  Y  T  E  M  A  K  K  H  S  C  F  G  F  A  E  K  I  P  N  I  V  W  W  K  T  C  V  R  N  S  F  V  Q  :  A  G  Y  E  Y  D  D  E  T  F  E  K  I  F  R  R  I  Y  A  T  F  G  S  S  A  P  Y  N  I  F  P  D  A  I  P  F  L  R  W  L  R  E  R  G  V  T  V  G  L  V  S  N  A  E  Y  R  Y  Q  D  V  I  L  P  A  L  G  L  N  Q  :  G  S  E  W  D  F  G  V  F  S  G  L </second_frame>
            <third_frame>   H  L  I  V  S  E  L  K  *  A  S  K  *  I  E  Y  T  H  K  L  L  Q  E  S  S  F  I  *  K  D  S  N  F  I  E  A  H  S  L  F  H  P  F  Q  L  L   : G  L  *  H  T  G  *  S  F  L  Y  S  H  L  Q  C  Q  F  *  R  S  Y  A  A  S  H  L  M  L  P  V  H  *  L  L  T  K  E  S  W  V  T  I  I  A  W  L  P  K  L  L  G  S  N  V  L  T  I  S  G  F  M  K  V  L  N  *  H  I  Q  K  W  Q  R  S  I  H  V  L  D  L  L  K  R  F  L  T  L  F  G  G  R  L  V  S  G  I  P  L  F  R :   Q  V  M  N  M  M  M  R  H  L  R  R  Y  L  D  A  Y  M  Q  L  L  V  L  L  H  L  T  T  Y  F  L  M  L  Y  R  S  S  D  G  S  A  R  G  A  L  Q  L  G  W  S  A  M  L  S  I  D  I  R  M  *  F  F  L  H  *  A  *  I  R :   D  L  S  G  I  S  A  Y  F  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79594" stop="79628"/>
                    <exon start="82035" stop="82335"/>
                    <exon start="82526" stop="82732"/>
                    <exon start="82871" stop="82906"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPFSFSSISASGTVTHRVEFSVQSFTMSILTKLRCITLDVTGTLIAYKGELGDYYCMAAKAAGQQCPDYKRVHEGFKLAYTEMAKKHSCFGFAEKIPNIVWWKTCVRNSFVQAGYEYDDETFEKIFRRIYATFGSSAPYNIFPDAIPFLRWLRERGVTVGLVSNAEYRYQDVILPALGLNQGSEWDFGVFSGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="88202" PGL_stop="89071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88202" e_stop="89071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="88202" e_stop="89071" e_length="870"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88202" stop="89071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAGGTAAAACTAATTAACTAATAAGCACGTCTATGACCAGGAACTTCAGCTGCAACAAACTCCTGCCCAAAAACAAGTGAATAAACGGCAAAATTTTGAACTACATGACGTGCATTTTAACATACATAGGAGCACACTCAATTGGGGTAAAAACCTTCACCTCTACTCCTCTTGAGCATCATCTTTATTCTTCTTTTTCTTCTTATCCTTCTTCTTGCTTTTACTTCCTTCATCGTCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTTTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAACATCGTTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCACAGACTCCACATCAGGGGATGCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTATCCAATGCTTCCTCGACTACCTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATACATCTAAATCATCCAATTTTCTCTTGTTAGCGTCCTCATCATCTTCCTTGTGTTTCTTCTTTTTCTTCTCAACCTCAACTGCAGCACCATCAGC</gDNA_template>
            <first_frame> K  K  N  S  S  T  L  E  Q  P  F  *  D  R  R  C  *  T  V  A  K  I  F  L  L  P  C  K  L  P  A  L  E  L  T  I  H  T  I  Q  L  Q  T  K  A  V  V  M  Q  L  I  S  C  I  S  A  T  D  I  Y  R  Q  *  S  T  K  T  E  N  I  S  K  F  R  *  K  T  A  L  W  I  E  I  L  K  S  *  Q  I  K  K  V  K  L  I  N  *  *  A  R  L  *  P  G  T  S  A  A  T  N  S  C  P  K  T  S  E  *  T  A  K  F  *  T  T  *  R  A  F  *  H  T  *  E  H  T  Q  L  G  *  K  P  S  P  L  L  L  L  S  I  I  F  I  L  L  F  L  L  I  L  L  L  A  F  T  S  F  I  V  T  S  N  I  T  I  L  *  F  F  I  F  L  L  F  L  F  L  L  L  G  L  L  L  I  *  G  C  N  I  V  I  L  F  V  L  L  F  L  F  L  F  H  R  L  H  I  R  G  C  S  F  I  S  F  F  L  L  F  L  L  L  F  F  F  Q  F  R  L  I  Q  C  F  L  D  Y  L  Y  L  W  F  L  *  S  T  G  C  R  G  Y  I  *  I  I  Q  F  S  L  V  S  V  L  I  I  F  L  V  F  L  L  F  L  L  N  L  N  C  S  T  I  S </first_frame>
            <second_frame>  R  K  I  V  Q  H  L  S  S  P  S  K  I  E  G  A  K  Q  W  P  K  S  F  Y  C  L  A  N  F  L  P  *  N  *  L  Y  T  P  Y  S  F  K  Q  R  Q  L  L  C  S  *  L  V  V  F  Q  L  Q  T  S  T  G  N  E  V  Q  K  Q  K  T  S  Q  N  L  D  R  K  Q  P  Y  G  L  K  Y  S  S  L  D  K  *  K  R  *  N  *  L  T  N  K  H  V  Y  D  Q  E  L  Q  L  Q  Q  T  P  A  Q  K  Q  V  N  K  R  Q  N  F  E  L  H  D  V  H  F  N  I  H  R  S  T  L  N  W  G  K  N  L  H  L  Y  S  S  *  A  S  S  L  F  F  F  F  F  L  S  F  F  L  L  L  L  P  S  S  S  L  P  T  S  P  F  S  D  S  L  S  F  F  F  F  F  F  F  F  S  D  F  S  S  S  E  D  A  T  S  L  F  S  L  S  F  F  F  F  S  F  F  T  D  S  T  S  G  D  A  A  S  S  A  S  F  F  F  F  F  F  F  S  F  F  S  S  D  L  S  N  A  S  S  T  T  S  T  F  G  F  F  K  A  L  G  A  G  D  T  S  K  S  S  N  F  L  L  L  A  S  S  S  S  S  L  C  F  F  F  F  F  S  T  S  T  A  A  P  S   </second_frame>
            <third_frame>   E  K  *  F  N  T  *  A  A  L  L  R  *  K  V  L  N  S  G  Q  N  L  S  T  A  L  Q  T  S  C  P  R  T  N  Y  T  H  H  T  A  S  N  K  G  S  C  Y  A  A  D  *  L  Y  F  S  Y  R  H  L  Q  A  M  K  Y  K  N  R  K  H  L  K  I  *  I  E  N  S  L  M  D  *  N  T  Q  V  L  T  N  K  K  G  K  T  N  *  L  I  S  T  S  M  T  R  N  F  S  C  N  K  L  L  P  K  N  K  *  I  N  G  K  I  L  N  Y  M  T  C  I  L  T  Y  I  G  A  H  S  I  G  V  K  T  F  T  S  T  P  L  E  H  H  L  Y  S  S  F  S  S  Y  P  S  S  C  F  Y  F  L  H  R  H  F  Q  H  H  H  S  L  I  L  Y  L  S  S  F  S  F  S  S  S  R  T  S  P  H  L  R  M  Q  H  R  Y  S  L  C  P  S  F  S  F  P  F  S  Q  T  P  H  Q  G  M  Q  L  H  Q  L  L  S  S  F  S  S  S  F  L  F  S  V  Q  T  Y  P  M  L  P  R  L  P  L  P  L  V  S  L  K  H  W  V  Q  G  I  H  L  N  H  P  I  F  S  C  *  R  P  H  H  L  P  C  V  S  S  F  S  S  Q  P  Q  L  Q  H  H  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88552" stop="89007"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INGKILNYMTCILTYIGAHSIGVKTFTSTPLEHHLYSSFSSYPSSCFYFLHRHFQHHHSLILYLSSFSFSSSRTSPHLRMQHRYSLCPSFSFPFSQTPHQGMQLHQLLSSFSSSFLFSVQTYPMLPRLPLPLVSLKHWVQGIHLNHPIFSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88647" stop="89069"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSLFFFFFLSFFLLLLPSSSLPTSPFSDSLSFFFFFFFFSDFSSSEDATSLFSLSFFFFSFFTDSTSGDAASSASFFFFFFFSFFSSDLSNASSTTSTFGFFKALGAGDTSKSSNFLLLASSSSSLCFFFFFSTSTAAPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 47 chains have been computed
$ 
$ memory statistics:
$ 32344 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2156 bytes was the average size of a spliced alignment
$ 17536 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1753 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 51 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:36:47
-->
