<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:39:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566785" ref_strand="+" ref_description="SGN-U566785 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|15241516|ref|NP_196991.1| (e_value=3e-58) cyclic nucleotide-regulated ion channel, putative (CNGC18) [Arabidopsis thaliana]; (*ATH) AT5G14870.1 (e_value=2e-60) | Symbol: None | cyclic nucleotide-regulated ion channel, putative (CNGC18), similar to cyclic nucleotide and calmodulin-regulated ion channel (cngc6) GI:4581207 from (Arabidopsis thaliana) | chr5:4808094-4810900 REVERSE | Aliases: T9L3.170, T9L3_170; (*SWP) sp|Q9LEQ3|CNG18_ARATH (e_value=2e-59) Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18; ">
      <seq>acaattttcaatggcagtaaaggaagctttgatgaaaaaaggagcttcaatggaacactcttaattcattcttccttcttttctagcgctaattttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctcctagctctagggttttcggccggggtgagcttgttatggatccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagcaaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgtgccaaggttattcgttattttcccattaaatcagcagattatcaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="2083" stop="618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1783" g_stop="1131" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1130" i_stop="1059" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1058" g_stop="918" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="794" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-U566785" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1783" e_stop="1131"/>
          <exon e_start="1058" e_stop="918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTTCAATGGCAGTAAAGGAAGCTTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAAGGTTATTCGTTATTTTCCCATTAAATCAGCAGATTATCAAAACT</genome_strand>
        <mrna_strand>ACAATTTTCAATGGCAGTAAAGGAAGCTTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCAAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAAGGTTATTCGTTATTTTCCCATTAAATCAGCAGATTATCAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564166" ref_strand="+" ref_description="SGN-U564166 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>cccaccttcttgctctgcaccttactggtaaatttcttaccctctacctggcccccactcaaaaatattctacgactccattagagaagctccagccaagaaacaaaagtgggtgtggtagataacccaaatctcacacattaatatggattgaggccacccttcttgttttgaaagtataatattgggttcttgtcatataaaaagttgagatttttatattccattgtgtgatattaataaggattagtgtcacatatatgtatatatattttttgtcatcatttattccatttgtataaaaagaaaaagcagctacttccaatttcccaccaactttttgttcctcgtcccaatactatcatctttgtttttttccctgtggtgttttgtgtctgtccctttgatcttctttcctgtgggtcactcaattgctcagtccactcataaaattcttggattttgcttccaatatcttcaaattaagggaaccactacccatttattgggtcattaatttcttcaagattatagtatgagcttctcttcaagtgtttgataactccagtaatggatattgaaagttggggccgtcaaaatcccataaagaaagaatcatggaggactgtaatagctttagcttatcanagtttanntgtggtttatggagatttgagtacttcacctctatatgtatannnagcantttcgcanagnannttcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="10519" stop="11902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10819" g_stop="11427" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11428" i_stop="11513" i_length="86">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11514" g_stop="11634" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="729" r_length="120" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U564166" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10819" e_stop="11427"/>
          <exon e_start="11514" e_stop="11634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCTTCTTGCTCTGCACCTTACTGGTAAATTTCTTACCCTCTACCTGGCCCCCACTCAAAAATATTCTACGACTCCATTAGAGAAGCTCCAGCCAAGAAACAAAAGTGGGTGTGGTAGATAACCCAAATCTCACACATTAATATGGATTGAGGCCACCCTTCTTGTTTTGAAAGTATAATATTGGGTTCTTGTCATATAAAAAGTTGAGATTTTTATATTCCATTGTGTGATATTAATAAGGATTAGTGTCACATATATGTATATATATTTTTTGTCATCATTTATTCCATTTGTATAAAAAGAAAAAGCAGCTACTTCCAATTTCCCACCAACTTTTTGTTCCTCGTCCCAATACTATCATCTTTGTTTTTTTCCCTGTGGTGTTTTGTGTCTGTCCCTTTGATCTTCTTTCCTGTGGGTCACTCAATTGCTCAGTCCACTCATAAAATTCTTGGATTTTGCTTCCAATATCTTCAAATTAAGGGAACCACTACCCATTTATTGGGTCATTAATTTCTTCAAGATTATAGTATGAGCTTCTCTTCAAGTGTTTGATAACTCCAGTAATGGATATTGAAAGTTGGGGCCGTCAAAATCCCATAAAGGTCAGAACTTTGCCAATATTATGTTGCCCATGTTTGAAAAAAAATTGAGGTTTTGAGTCATTTTTGATAATCCAATTTTGTTGCAGAAAGAATCATGGAGGACTGTAATAGCTTTAGCTTATCAGAGTTTAGGTGTGGTTTATGGAGATTTGAGTACTTCACCTCTATATGTATACAAGAGCACTTTCGCAGAGGACATTCAACATT</genome_strand>
        <mrna_strand>CCCACCTTCTTGCTCTGCACCTTACTGGTAAATTTCTTACCCTCTACCTGGCCCCCACTCAAAAATATTCTACGACTCCATTAGAGAAGCTCCAGCCAAGAAACAAAAGTGGGTGTGGTAGATAACCCAAATCTCACACATTAATATGGATTGAGGCCACCCTTCTTGTTTTGAAAGTATAATATTGGGTTCTTGTCATATAAAAAGTTGAGATTTTTATATTCCATTGTGTGATATTAATAAGGATTAGTGTCACATATATGTATATATATTTTTTGTCATCATTTATTCCATTTGTATAAAAAGAAAAAGCAGCTACTTCCAATTTCCCACCAACTTTTTGTTCCTCGTCCCAATACTATCATCTTTGTTTTTTTCCCTGTGGTGTTTTGTGTCTGTCCCTTTGATCTTCTTTCCTGTGGGTCACTCAATTGCTCAGTCCACTCATAAAATTCTTGGATTTTGCTTCCAATATCTTCAAATTAAGGGAACCACTACCCATTTATTGGGTCATTAATTTCTTCAAGATTATAGTATGAGCTTCTCTTCAAGTGTTTGATAACTCCAGTAATGGATATTGAAAGTTGGGGCCGTCAAAATCCCATAAAG......................................................................................AAAGAATCATGGAGGACTGTAATAGCTTTAGCTTATCANAGTTTANNTGTGGTTTATGGAGATTTGAGTACTTCACCTCTATATGTATA-NNNAGCANTTTCGCANAGNANNTTCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598358" ref_strand="+" ref_description="SGN-U598358 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|112259089|gb|ABI14646.1| (e_value=2e-95) putative; (*ATH) AT1G70300.1 (e_value=1e-88)  Symbol: None | potassium transporter, putative, similar to potassium transporter HAK2p (Mesembryanthemum crystallinum) gi:14091471:gb:AAK53759; KUP/HAK/KT Transporter family member, PMID:11500563; contains Pfam profile PF02705: K+ potassium transpor... ; (*SWP) sp|Q67VS5|HAK10_ORYSJ (e_value=2e-88) Potassium transporter 10 OS=Oryza sativa subsp. japonica GN=HAK10; ">
      <seq>acttgtatggttatcggtgatggagtccttacgcctgcaatctcagtgttctctgctgtctctggactagaactttcaatggcaaagcatcatcaccaatatgtagaagttccagttgcttgtgtcatacttgtgttcttattttttctccaacattatgggacacatcgactaggatttctatttgcaccgattgtgattacgtggcttttgtgcattagtgcaatcggggtgtacaacatcatccactggaatccccatgtttaccaagcattatctccatactacatgtacaaattcttgaagaagacccaaagaggaggatggatgtcactgggtgggattttattatgtataacaggttcagaggctatgtttgctgatcttggacacttctcacagctgtctattaagatagcttttacctttgttgtttacccatcattaattcttgcttatatgggacaagctgcgtatctttccaagcatcacgttatcgcaagtgattaccacattgggctctatgtatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="11652" stop="15205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11952" g_stop="11997" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11998" i_stop="12242" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12243" g_stop="12296" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="100" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12297" i_stop="14085" i_length="1789">
            <donor d_prob="0.171" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14086" g_stop="14346" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="361" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14347" i_stop="14473" i_length="127">
            <donor d_prob="0.114" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14474" g_stop="14526" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="414" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14527" i_stop="14786" i_length="260">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14787" g_stop="14905" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="533" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U598358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11952" e_stop="11997"/>
          <exon e_start="12243" e_stop="12296"/>
          <exon e_start="14086" e_stop="14346"/>
          <exon e_start="14474" e_stop="14526"/>
          <exon e_start="14787" e_stop="14905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTATGGTTATCGGTGATGGAGTCCTTACGCCTGCAATCTCAGGTATATATGATCAGAGATTTCAATATGTGTGTGAAAAATCATTAAATTTTTACAATTATCATGCTGTGAACCTGTAATCATAAAAGTGCAATGAGTTCAGGGGTAGGTTGAACGATCAAATTTAAATTCTGGATCTGCCTCGTGTATAATGCTTGTTTGACTTAGTTTATTGCCAGATTGGAGATGTGATCTTGCTGATAATTAACCCTTTTTTTAATCTTATTTATGGTGCATTGAATCTGCAGTGTTCTCTGCTGTCTCTGGACTAGAACTTTCAATGGCAAAGCATCATCACCAATGTGAGTCCATATCTTTTGGCAGATCTGTTGTTCCCTAATGGCCCCCTTGCCCATATCCCTTGGTGAAGAAAATGAAGAATCATAAGTCATATCTATTATATTTTACAGCTTTCTTCCATATTATTAAAAGATGCTCATTCTTGTTATGTCAAAACAGTACTTATTAGATGATATTCTGATGCTCTAGCTAACTGATTAACTGAAAAGACCTAGGAGTGTTTATGACAAAGTGTAGAATATAATAATTGAAAATAGTTTCTGGTCTAGTGTATGTCTGGTTTAAAGTAGTCATAATGAACTACTTTCTTTGTTAAAATTTATTTGTTTGGTTTTGACTTGACATGAAGTTTAAAAAAGTGAAGTGTTCTTAAACTAAAGACAGGTAAATTATACTAAAATATTTTTTAATTTTGTGATCTTAAGCATGTCATATGAACAATTGGAATTGAGAGACATTCTTTTTTTAAACGGACTAAAAGGAAAGTAAGACAAACATATTGTAACGAGGGAATATTAAGATAGAGATCAATTCCTTCTGGCTGATCTCATCTGATTATCTTTAGCTTTTCCTGATGCCACTATCTTATTATAATTTGGTTTGTGCATAGTTTAATCAGATATATCTGGGTTACATGTAACGAGACTCAGGGATTTAAAGTTGGTTTTCTTTATCTGGAAACTTTTTCTAATGGACGTGCAATTTGTGACATGGAGAGGTTGCCAATATCTGATGAAGATGCATTATTGTGGGTCCCTTGATACTAAATTAAAGACAAAAATGTATATGGTAATCAAAGTCAGATCAACATCCATAAATAAATAAAGTTAGGTTCTTTCCCCACTGTGGTAGACCATATTGATGTTATCCTTATTTTTAAAAGTAAGGATTCAACTTGAGACTAATAGTATTATTTCATAAAGCAAGAGGCTGCGGGATTATGTTTGGTTATATCCGAAATTGAATAGAATTAGTGGAAAAAGATTAAGTTAGTTTGGTACAACCACTATTATAGGTATAAAGTATGTTAGTCTGATTAAAATGCGTATTCCACTGAATTGGAAGGAAAGAAAATATACTATTGGTATGATGTCTCTTGAAGCTCCTTAAAGACAATTGCCCTCTCTGTTGTGCCTGAGTCACGATTTGCATATCTGGTATTTAGAATGTGAGAAATGAGCAGATAGAATGGGGGAATGAATTGGACAAGTACACCTATGAGCTTTTATACATAGTAATCTAACATTGGAACATAGTAATGCAGCAAAAGATTTACTGATATGCCTTAAAATTGTAGATAGTGATTATGATAAGGAACTGTAGAAACTAATTACCTAAATAGTTGGGTGTGTCTGTTTGACAGCAAAATGATAACTGATAGTTTTGTTGCAATTGTTTGGAGAATAAGCTAAGAAATCTTATTATTCATATAAATATTGCGTGTGGCCCATAATATGGATATTCCTTCTCTAAAATGGACTCATACTAGCAACTTATGGATTTCTGTATCAAGAAAAAATCTGAAAATGTGGTTCAAACCAATCATATAATTACAGATACAGGACAGTTATTTGATGATGCTTGCTTAACTAGTATGGAGTTTTGATGATTTCTCGAGTTAATTTTTGAAATTATGGGAGTCAGAAGCAAACTTATTTTGTTTCTATGGATGATGAAGATGTCACTGATTATTGTTATAGTCTAAGATCATACTGAAAATCTTTTTGTTGAAACAAGAAGCAATAACTGTGGAACTAATGAATATTATGCTGAAATGATTTGTATCTGCAGATGTAGAAGTTCCAGTTGCTTGTGTCATACTTGTGTTCTTATTTTTTCTCCAACATTATGGGACACATCGACTAGGATTTCTATTTGCACCGATTGTGATTACGTGGCTTTTGTGCATTAGTGCAATCGGGGTGTACAACATCATCCACTGGAATCCCCATGTTTACCAAGCATTATCTCCATACTACATGTACAAATTCTTGAAGAAGACCCAAAGAGGAGGATGGATGTCACTGGGTGGGATTTTATTATGTATAACAGGTAGCCCATTCATTGATGTGAAATTGTTGTCTTGATGTTTACGGTGGGATTTGTCATTTCTTTGCTTGTCAAATTCCTCAAGTTATTTGAGTTAATATTGTATTCTCTGTGCTTGTCCATCATTCAGGTTCAGAGGCTATGTTTGCTGATCTTGGACACTTCTCACAGCTGTCTATTAAGGTAATTAACTCGAGTCTTGACACAGGACGGTTTTGCATCAGTTTCCTGAACTTTGCTTCAAAAGAGTGCCATCAAATATGTATCCCACATTTTGGAGGATACTGAGCTAATGTGTGTTAAACTTTTTATCGTCAAAATGAGATTTTCTGCTGTTTTGTTCAATATGAATAAAGGTCCTTGTAGATGTACCAAGTTAAAGTGCTTTATGTTTGGCAACTGCAAATGCAACCAAAATCCTAACAAGAGCTGCTTCTCTGCAGATAGCTTTTACCTTTGTTGTTTACCCATCATTAATTCTTGCTTATATGGGACAAGCTGCGTATCTTTCCAAGCATCACGTTATCGCAAGTGATTACCACATTGGGTTCTATGTATCAGT</genome_strand>
        <mrna_strand>ACTTGTATGGTTATCGGTGATGGAGTCCTTACGCCTGCAATCTCAG.....................................................................................................................................................................................................................................................TGTTCTCTGCTGTCTCTGGACTAGAACTTTCAATGGCAAAGCATCATCACCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGAAGTTCCAGTTGCTTGTGTCATACTTGTGTTCTTATTTTTTCTCCAACATTATGGGACACATCGACTAGGATTTCTATTTGCACCGATTGTGATTACGTGGCTTTTGTGCATTAGTGCAATCGGGGTGTACAACATCATCCACTGGAATCCCCATGTTTACCAAGCATTATCTCCATACTACATGTACAAATTCTTGAAGAAGACCCAAAGAGGAGGATGGATGTCACTGGGTGGGATTTTATTATGTATAACAG...............................................................................................................................GTTCAGAGGCTATGTTTGCTGATCTTGGACACTTCTCACAGCTGTCTATTAAG....................................................................................................................................................................................................................................................................ATAGCTTTTACCTTTGTTGTTTACCCATCATTAATTCTTGCTTATATGGGACAAGCTGCGTATCTTTCCAAGCATCACGTTATCGCAAGTGATTACCACATTGGGCTCTATGTATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585467" ref_strand="+" ref_description="SGN-U585467 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|112259089|gb|ABI14646.1| (e_value=1e-55) putative; (*ATH) AT5G14880.1 (e_value=3e-34)  Symbol: None | potassium transporter, putative, similar to potassium transporter HAK2p (Mesembryanthemum crystallinum) gi:14091471:gb:AAK53759; KUP/HAK/KT Transporter family member, PMID:11500563; contains Pfam profile PF02705: K+ potassium transpor... ; (*SWP) sp|Q9M7J9|POT8_ARATH (e_value=2e-33) Potassium transporter 8 OS=Arabidopsis thaliana GN=POT8; ">
      <seq>ttgggacaacttcaacacacattgatgggataagaatatgcgaggacaacggagagttgactcatgtagatacagaaatgatagagatcagctcgccagaagttccacgaaaaagagtaagatttctggtgcctgagagcccacaaatggatgcaagtgttcgcgaagagttgcaagaacttatggaagctagggaagcagggatggcatttatacttggtcattgttatgttagagctaaaaggggttcaagtttgataaaaaagctggtgattaacataggatatgactttttaagaagaaattgtcgtggaccaacatatgcattgagcttccctcaagcttcaacattggaggttggaatgatctaccatgtataatttatgctttactttttttctaattaaaggatagaattgtagcatatgttttttgtttttttttgtatttcaaattcgaaaagctttgtaaatgttgtaatggtacacgagtttttgctttatacaaggcaataaattaaaaggaaatactgaactttagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="16135" stop="17278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16435" g_stop="16978" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U585467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16435" e_stop="16978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGC</genome_strand>
        <mrna_strand>TTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585488" ref_strand="+" ref_description="SGN-U585488 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157345505|emb|CAO14803.1| (e_value=3e-63) unnamed; (*ATH) AT1G70280.2 (e_value=9e-32) | Symbol: None | NHL repeat-containing protein, contains Pfam profile PF01436: NHL repeat | chr1:26469556-26472369 REVERSE | Aliases: None; ">
      <seq>ttggaggcatgcaacatccaccatatcagagaaatatgaagtcagtgaggcctcccataattccgccagaagatgaatacgagaaacaggatgaaaacctgtttctatcactaggaaggcttgttatgaacactggttcgactgtggttgaaatatttggaggaatgttctcaggtttcagaaagaacagttacccccatcatgtacagcagcactaccattacaatcacaaacaatcgagtacatggccaatgcaggaaagctatgtaattcgagatgaagatgaggccccaccccttgataccagagaccctacaccccgaaaaacctatcccatcatgaacaaagacccggagaaaccacgacatatcagacaaagtcaatcacattatgtaggatggaatggcaatgcacatgggcatggcaattttcagcaacaacaacatcaacatcaacaacagtttcttccacaagtgtatcagcatcacgacaagcaccagtcatcaagtcctcaaacatactacgaggaaagctgtgaaacgaaagagattgtgtttggagcagttcaagaacaggatggacgacatgaaacaatggtgataaaagcagttgattatggggatcctgcttataacaatcacaacgttcgatccaggtacaactacagcacgcgttactcattctgatggtaatagctagacgaccattgcgaaaaacatcaacttgtactctgtctggatttcacttgttgtatctttcatagggaaatggatatgatcatagaaaacagcaccaacaaagtatatgaattctgaatttcttttgtaatccataacttatagtgaatctttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="20965" stop="22417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21262" g_stop="22117" g_length="856"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U585488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21262" e_stop="22117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGTTCGATCCAGGTACAACTACAGCACGCGTTACTCATTCTGATGGTAATAGCTAGACGACCATTGCGAAAAACATCAACTTGTACTCTGTCTGGATTTCACTTGTTGTATCTTTCATAGGGAAATGGATATGATCATAGAAAACAGCACCAACAAAGTATATGAATTCTGAATTTCTTTTGTAATCCATAACTTATAGTGAATCTTTTTGAG</genome_strand>
        <mrna_strand>TTGGAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCCATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGTTCGATCCAGGTACAACTACAGCACGCGTTACTCATTCTGATGGTAATAGCTAGACGACCATTGCGAAAAACATCAACTTGTACTCTGTCTGGATTTCACTTGTTGTATCTTTCATAGGGAAATGGATATGATCATAGAAAACAGCACCAACAAAGTATATGAATTCTGAATTTCTTTTGTAATCCATAACTTATAGTGAATCTTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564794" ref_strand="+" ref_description="SGN-U564794 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157345506|emb|CAO14804.1| (e_value=1e-23) unnamed; (*ATH) AT5G14890.1 (e_value=2e-21) | Symbol: None | NHL repeat-containing protein, contains Pfam profile PF01436: NHL repeat | chr5:4817952-4821811 FORWARD | Aliases: F2G14.10, F2G14_10; ">
      <seq>taaaattccatatttatctgcaaacaacaaaacccctaatttaaaggggttgcggattgtgtgatattttctcctttcttgttgttgtcgtcaatttcttgaaacatggcgggtcaaacaaacacaaaagactcggacgtgaatgaagaattgcaggagctcgaattcacgaaaaggggttgttgtttttggtttccatctttcacatgtggaagaggcgtttgggaacgagtctctaccagtgatcaaaaggaagaaacgcattggtgggataaggggttaaacgttgttatgaaagtcagggagtggtcggaacttgtggcaggtccaaaatggaagacatttattagacgattcaataaaaatcgttctaaaactaataaattcnnttacgaccccatgagttactccttgaatttcgangatgnnncnnnnntaaacgatcaatcggaagacgatcgtttatttcgtgatttctcgtcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="27578" stop="28663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27878" g_stop="28363" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U564794" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27878" e_stop="28363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTCCATATTTATCTGCAAACAACAAAACCCCTAATTTAAAGGGGTTGCGGATTGTGTGATATTTTCTCCTTTCTTGTTGTTGTCGTCAATTTCTTGAAACATGGCGGGTCAAACAAACACAAAAGACTCGGACGTGAATGAAGAATTGCAGGAGCTCGAATTCACGAAAAGGGGTTGTTGTTTTTGGTTTCCATCTTTCACATGTGGAAGAGGCGTTTGGGAACGAGTCTCTACCAGTGATCAAAAGGAAGAAACGCATTGGTGGGATAAGGGGTTAAACGTTGTTATGAAAGTCAGGGAGTGGTCGGAACTTGTGGCAGGTCCAAAATGGAAGACATTTATTAGACGATTCAATAAAAATCGTTCTAAAACTAATAAATTCAATTACGACCCCATGAGTTACTCCTTGAATTTCGATGATGGACCAGGGGTAAACGATCAATCGGAAGACGATCGTTTATTTCGTGATTTCTCGTCGAGA</genome_strand>
        <mrna_strand>TAAAATTCCATATTTATCTGCAAACAACAAAACCCCTAATTTAAAGGGGTTGCGGATTGTGTGATATTTTCTCCTTTCTTGTTGTTGTCGTCAATTTCTTGAAACATGGCGGGTCAAACAAACACAAAAGACTCGGACGTGAATGAAGAATTGCAGGAGCTCGAATTCACGAAAAGGGGTTGTTGTTTTTGGTTTCCATCTTTCACATGTGGAAGAGGCGTTTGGGAACGAGTCTCTACCAGTGATCAAAAGGAAGAAACGCATTGGTGGGATAAGGGGTTAAACGTTGTTATGAAAGTCAGGGAGTGGTCGGAACTTGTGGCAGGTCCAAAATGGAAGACATTTATTAGACGATTCAATAAAAATCGTTCTAAAACTAATAAATTCNNTTACGACCCCATGAGTTACTCCTTGAATTTCGANGATGNNNCNNNNNTAAACGATCAATCGGAAGACGATCGTTTATTTCGTGATTTCTCGTCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594624" ref_strand="+" ref_description="SGN-U594624 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctaacgtgcccttttgcgacaactcttttcatcccgggtttccattgaaaatccaattttcgttacgttgaaccgagagatgatgatggttatcatggtaatggggatcacgagttccccacttctcaaaagactatggaactagaggaagttgtggttgctaaagcaacatttcctgtgagacttggtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="33101" stop="32302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32801" g_stop="32602" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-U594624" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32801" e_stop="32602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACGTGCCCTCTTTGTCGAGCAACTCTTTTCAATCCCGGGTTTCCCATTGAAAATCCAATTTTCGATTACGTTGAACCGAGAGATGATGATGGTTATCATGGTAATGGGGATCACGAGTTCCCCACTTCTCAAAAGACTATGGAACTAGAGGAAGTTGTGGTTGCTAAAGCAACATTTCCTGTGAGACTTGGTAAGT</genome_strand>
        <mrna_strand>CT-AACGTGCCCT-TTTG-CGA-CAACTCTTTTC-ATCCCGGGTTT-CCATTGAAAATCCAATTTTCG-TTACGTTGAACCGAGAGATGATGATGGTTATCATGGTAATGGGGATCACGAGTTCCCCACTTCTCAAAAGACTATGGAACTAGAGGAAGTTGTGGTTGCTAAAGCAACATTTCCTGTGAGACTTGGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594625" ref_strand="+" ref_description="SGN-U594625 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147860397|emb|CAN80445.1| (e_value=3e-30) hypothetical; (*ATH) AT5G40250.1 (e_value=2e-29)  Symbol: None | zinc finger (C3HC4-type RING finger) family protein, similar to RING-H2 finger protein RHX1a (Arabidopsis thaliana) GI:3790591; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) | chr5:16103284-16104414 FORWARD | Al... ; (*SWP) sp|Q9FL07|ATL5I_ARATH (e_value=2e-28) RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I; ">
      <seq>agaggttgttggttctaaatagccctttgattgtgctgtttgcttgtgtgaattctctgataaggacaaattgatattgctccctacttgtagccatgctttccatatcaactgcattgatacttggctcctctctaactcaacgtgccctctttgacgagcaactcttttcaatcccgggtttcccattgaaaatccaattttcgattacgttgaaccgagagatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="33239" stop="32407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32939" g_stop="32707" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-U594625" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32939" e_stop="32707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTTGTTGGTCCTAAAGAGCCCTTTGATTGTGCTGTTTGCTTGTGTGAATTCTCTGATAAGGACAAATTGAGATTGCTCCCTACTTGTAGCCATGCTTTCCATATCAACTGCATTGATACTTGGCTCCTCTCTAACTCAACGTGCCCTCTTTGTCGAGCAACTCTTTTCAATCCCGGGTTTCCCATTGAAAATCCAATTTTCGATTACGTTGAACCGAGAGATGATGATG</genome_strand>
        <mrna_strand>AGAGGTTGTTGGTTCTAAATAGCCCTTTGATTGTGCTGTTTGCTTGTGTGAATTCTCTGATAAGGACAAATTGATATTGCTCCCTACTTGTAGCCATGCTTTCCATATCAACTGCATTGATACTTGGCTCCTCTCTAACTCAACGTGCCCTCTTTGACGAGCAACTCTTTTCAATCCCGGGTTTCCCATTGAAAATCCAATTTTCGATTACGTTGAACCGAGAGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574187" ref_strand="+" ref_description="SGN-U574187 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>ggagacttgtcagttgacagcttttggtttccaaataagtcaatgtcctttttcagttcaaaatcacccctctaacttctctgttttatattttacacactatttttttctatgttgctaaaaactagaaattgtttaaacatagagagaaaaataggctcaaaaatattcaaacttttttttttctatttatgttgtaaaagggatttcaagatcctataaatgtcttagggttttgctgcagccagaagtgattctttatataaagggattgttataagtattgtttttctgtgtaatggtgactaagtgggaatcaagacaggtaaagattctgtctttagcattttctgtttggtttcatcactatctcttgttatttgctctgtcactaaattgtgttttcttttgaaaaaaaaacaaaagactccaacttttcttgaatctgaagggacagtgattctgaatgtttgagtttttctaagcttctgagatggtgaaaggtagataaaaaaagttggtttttttttaatgagttgttgagatgatttgttcatttggtgaagttgagtcacaaagatgggtttctgggcatacccatctgaaaagttcttggattcaatatagaaaagatggtgtttttacatatcctcctcctctgtttcccccatctcctcctccatttggtggaagttctagttttcataaggaaccaaactcatcttcttcatccccatctggaaacaagattagtccagctgttcttttcattatagttatattagctgtcctgtttttcatatctggtctgcttcatttgctagttaggtttcttatcaaacacccttctttttcagcatcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="34231" stop="32767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33932" g_stop="33067" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="866" r_length="866" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-U574187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33932" e_stop="33067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACTTGTCAGTTGACAGCTTTTGGTTTCCAAATAAGTCAATGTCCTTTTTCAGTTCAAAATCACCCCTCTAACTTCTCTGTTTTATATTTTACACACTATTTTTTTCTATGTTGCTAAAAACTAGAAATTGTTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATATCCTCCTCCTCTGTTTCCCCCATCTCCTCCTCCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACCAAACTCATCTTCTTCATCCCCATCTGGAAACAAGATTAGTCCAGCTGTTCTTTTCATTATAGTTATATTAGCTGTCCTGTTTTTCATATCTGGTCTGCTTCATTTGCTAGTTAGGTTTCTTATCAAACACCCTTCTTCTTCAGCATCATCTC</genome_strand>
        <mrna_strand>GGAGACTTGTCAGTTGACAGCTTTTGGTTTCCAAATAAGTCAATGTCCTTTTTCAGTTCAAAATCACCCCTCTAACTTCTCTGTTTTATATTTTACACACTATTTTTTTCTATGTTGCTAAAAACTAGAAATTGTTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATATCCTCCTCCTCTGTTTCCCCCATCTCCTCCTCCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACCAAACTCATCTTCTTCATCCCCATCTGGAAACAAGATTAGTCCAGCTGTTCTTTTCATTATAGTTATATTAGCTGTCCTGTTTTTCATATCTGGTCTGCTTCATTTGCTAGTTAGGTTTCTTATCAAACACCCTTCTTTTTCAGCATCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562993" ref_strand="+" ref_description="SGN-U562993 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157342262|emb|CAO64375.1| (e_value=3e-37) unnamed; (*ATH) AT3G28050.1 (e_value=4e-34) | Symbol: None | nodulin MtN21 family protein, similar to MtN21 (Medicago truncatula) GI:2598575; contains Pfam profile PF00892: Integral membrane protein | chr3:10444054-10446622 FORWARD | Aliases: MMG15.22; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=4e-19) Auxin-induced protein 5NG4 OS=Pinus taeda; ">
      <seq>ggccaggattttgtgtttgacataatctattacatacaaaaatttctaatttgattgaccacaagttctaagagtagattttgaagattattttttaaatatatgtttgatattttcaagttgtcatgaactaactcatactttcattagtccaaattatttaaatacgaaaaatattcaagttgacaactctaccctaccctgctttggccgcagtagtcaaatttctctttcttttaggtttaagcacgataggcaaataaaaagggtccaacttgattaatgaaaccaaaaaaaaaaaaaaacattatcaaattttgtacggcaatgaaaaagttgatgtctttcttctgaagaaaaaaaaggattcttgactaggtgtgggactgggagtgtaaagaaagaaaaatggtgatgcaatgttggtcaactgatttcttgccctttttggcaatggtgatggtggaatgttgtgaaatgttgatgattacacttggtaaagcagccatgaatgatggattgaacaatcttgtttatgttgtttactataatgcccttggtaccctttttcttcttccttgcttaatcttccatagacacagaagcaatatggttcctattactttgcctatattgtggagattcttccttcttggcctgttgggaatttgtttggtgcaagctgtggcctttacaggtattaagtacagcactcctacactggcagctgctttagggaatttgatgccaggttttacatttttgcttgccatcattttcaggatggagaagttagatataacaaaggccagcagtcaagcaaaatctgtgggcaccgtagtggcaattatgggggcatccatcatgacattatacaaaggaccaagggtactaggatcaaatttaccttctgattcatcccatcacgagttagtactttcacaaaaatcaaactggatattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="36575" stop="38878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36872" g_stop="37473" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37474" i_stop="37550" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37551" g_stop="37613" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="665" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37614" i_stop="37688" i_length="75">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37689" g_stop="37805" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="782" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37806" i_stop="38396" i_length="591">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38397" g_stop="38578" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="964" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U562993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>964</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36872" e_stop="37473"/>
          <exon e_start="37551" e_stop="37613"/>
          <exon e_start="37689" e_stop="37805"/>
          <exon e_start="38397" e_stop="38578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGGATTTTGTGTTTGACATAATCTATTACATACAAAAATTTCTAATTTGATTGACCACAAGTTCTAAGAGTAGATTTTGAAGATTATTTTTTAAATATATGTTTGATATTTTCAAGTTGTCATGAACTAACTCATACTTTCATTAGTACAAATTATTTAAATACGAAAAATATTCAAGTTGACAACTCTACCCTACCCTGCTTTGGCCGCAGTAGTCAAATTTCTCTTTCTTTTAGGTTTAAGCACGATAGGCAAATAAAAAGGGTCCAACTTGATTAATGAAACCAAAAAAAAAAAAAAACATTATCAAATTTTGTACGGCAATGAAAAAGTTGTTGTCTTTCTTCTGAAGAAAAAAAAGGATTCTTGACTAGGTGTGGGACTGGGAGTGTAAAGAAAGAAAAATGGTGATGCAATGTTGGTCAACTGATTTCTTGCCCTTTTTGGCAATGGTGATGGTGGAATGTTGTGAAATGTTGATGATTACACTTGGTAAAGCAGCCATGAATGATGGATTGAACAATCTTGTTTATGTTGTTTACTATAATGCCCTTGGTACCCTTTTTCTTCTTCCTTGCTTAATCTTCCATAGACACAGGTTTGTCAAAAATCATCAATCCTATTTCTTGAGATTACTCAAATTTAAAAAAGTCTTACTTTTTTCTTTTCTTTCAGAAGCAATATGGTTCCTATTACTTTGCCTATATTGTGGAGATTCTTCCTTCTTGGCCTGTTGGGGTATTCTACTAATTTTCTTCTCTGTTTTATTGTTATCAAATTTGGGGAAAATTTAACTTGTGAACTGAAATGCAGAATTTGTTTGGTGCAAGCTGTGGCCTTTACAGGTATTAAGTACAGCACTCCTACACTGGCAGCTGCTTTAGGGAATTTGATGCCAGGTTTTACATTTTTGCTTGCCATCATTTTCAGGTGAGGCTTCGCCAACTCCTAATTTCTTCTTCGATTTATATACAGTGTTTATGGCAACATAGTTTACCATTCATTATCATTAGGTTTACTAATTAATGCTATAGAAATTAAGCTCACTTTTGTGCATAGTTAGGGGTTTCCACTTTCCAGTATCTAAATCATTCTTTAATATGTGCAAAAAAGTTGCTTTCTTCTGTTGCAAACCTAAATAGTTTCTCGTCTTCAATATAGTGGCAGACCCAGAATTTGTAGGTTATTTGCTCTTAATCACAGAAGGTGCTCGTGAATCTATTTTGGTGTAAATGCTAGTTTCCTATTAAAAATATAGTGATCGTGTAAAGAACAATGTGTGCTTGAGCATACAGTAGTGTACATGTAGGTCTGCCATTGCTTGAGTATTTGTTTAAACTTAATAGATATGCTCACAATTGTGTGACGGAGGACAATTAAAAAATTACTGATCTGTGTTCTCTTATATGTGGTATTGACACTAGCACTATGTCTTTTTTTCTAGTAAAAGTGGTACTATGTTAGATCATAAGTTTCAGTTGTAACTAGTTGTTCATTCTTTCAGTCTTTTGACATTTTTAGGATGGAGAAGTTAGATATAACAAAGGCCAGCAGTCAAGCAAAATCTGTGGGCACCGTAGTGGCAATTATGGGGGCATCCATCATGACATTATACAAAGGACCAAGGGTACTAGGATCAAATTTACCTTCTGATTCATCCCATCACGAGTTAGTACTTTCACAAGAATCAAACTGGATATTGG</genome_strand>
        <mrna_strand>GGCCAGGATTTTGTGTTTGACATAATCTATTACATACAAAAATTTCTAATTTGATTGACCACAAGTTCTAAGAGTAGATTTTGAAGATTATTTTTTAAATATATGTTTGATATTTTCAAGTTGTCATGAACTAACTCATACTTTCATTAGTCCAAATTATTTAAATACGAAAAATATTCAAGTTGACAACTCTACCCTACCCTGCTTTGGCCGCAGTAGTCAAATTTCTCTTTCTTTTAGGTTTAAGCACGATAGGCAAATAAAAAGGGTCCAACTTGATTAATGAAACCAAAAAAAAAAAAAAACATTATCAAATTTTGTACGGCAATGAAAAAGTTGATGTCTTTCTTCTGAAGAAAAAAAAGGATTCTTGACTAGGTGTGGGACTGGGAGTGTAAAGAAAGAAAAATGGTGATGCAATGTTGGTCAACTGATTTCTTGCCCTTTTTGGCAATGGTGATGGTGGAATGTTGTGAAATGTTGATGATTACACTTGGTAAAGCAGCCATGAATGATGGATTGAACAATCTTGTTTATGTTGTTTACTATAATGCCCTTGGTACCCTTTTTCTTCTTCCTTGCTTAATCTTCCATAGACACAG.............................................................................AAGCAATATGGTTCCTATTACTTTGCCTATATTGTGGAGATTCTTCCTTCTTGGCCTGTTGGG...........................................................................AATTTGTTTGGTGCAAGCTGTGGCCTTTACAGGTATTAAGTACAGCACTCCTACACTGGCAGCTGCTTTAGGGAATTTGATGCCAGGTTTTACATTTTTGCTTGCCATCATTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGTTAGATATAACAAAGGCCAGCAGTCAAGCAAAATCTGTGGGCACCGTAGTGGCAATTATGGGGGCATCCATCATGACATTATACAAAGGACCAAGGGTACTAGGATCAAATTTACCTTCTGATTCATCCCATCACGAGTTAGTACTTTCACAAAAATCAAACTGGATATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565635" ref_strand="+" ref_description="SGN-U565635 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157345511|emb|CAO14809.1| (e_value=2e-115) unnamed; (*ATH) AT3G28050.1 (e_value=3e-111) | Symbol: None | nodulin MtN21 family protein, similar to MtN21 (Medicago truncatula) GI:2598575; contains Pfam profile PF00892: Integral membrane protein | chr3:10444054-10446622 FORWARD | Aliases: MMG15.22; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-38) Auxin-induced protein 5NG4 OS=Pinus taeda; ">
      <seq>ccttaggaataaaaaaaaagtgtaaaaaatttcatctttaattttccctataaaacttagctaaaaaaacagttgcttcaatttcaatgtaagcttagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctgggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctcttaggagatactctttatttgggaagcatcgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattctagtgatctcgagtcgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatctcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccatcttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacagctattctggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41614" stop="45884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41914" g_stop="42366" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="519" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="633" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44361" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="871" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44362" i_stop="44553" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44554" g_stop="44712" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="1030" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44713" i_stop="44817" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44818" g_stop="44969" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1031" r_stop="1182" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44970" i_stop="45051" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45052" g_stop="45584" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1183" r_stop="1715" r_length="533" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U565635" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41914" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44361"/>
          <exon e_start="44554" e_stop="44712"/>
          <exon e_start="44818" e_stop="44969"/>
          <exon e_start="45052" e_stop="45584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTG</genome_strand>
        <mrna_strand>CCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG..................................................................................CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574000" ref_strand="+" ref_description="SGN-U574000 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|37962659|gb|AAR05646.1| (e_value=0) alpha-DOX1 [Lycopersicon esculentum]; (*ATH) AT3G01420.1 (e_value=0)  Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6... ; ">
      <seq>tagtgcatttcttctgcttatgttactttaaaaaataagttatatatagagagagaggacgttaccttcctgtacactccaaaaatcatattacaagtgatattaatttctcgtataaacaatgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacaatttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaattaggtgaaaatggactcatccaacaagatgaaaatggaaaaattatctctggtgatgttcgtaacacttgggctggacttttaacgcttcaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtaattgcaaaagttcacaccatagattggactgttcagcttctgaaaaccgatactatgcttgcaggaatgcgtgccaattggtatggattactaggaaagaagttcaaggatacatttggtcatgttggttccattttaagtggtgttgttggaatgaagaaacctgagaatcatggagtgccttattccttaactgaagaatttacgagtgtttatagaatgcatcaactgttacctgatacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagagtttaaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcataatcctattccactctattttcgtgttcctcagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51135" stop="55437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51435" g_stop="51669" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51813" g_stop="52076" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="499" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52671" g_stop="52820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="649" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53079" g_stop="53212" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="783" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53322" g_stop="53535" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="997" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53698" g_stop="53843" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="998" r_stop="1143" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53844" i_stop="53929" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53930" g_stop="54154" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1144" r_stop="1368" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54243" g_stop="54445" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1369" r_stop="1571" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54588" g_stop="54831" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1572" r_stop="1815" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54912" g_stop="55137" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1816" r_stop="2041" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U574000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2041</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51435" e_stop="51669"/>
          <exon e_start="51813" e_stop="52076"/>
          <exon e_start="52671" e_stop="52820"/>
          <exon e_start="53079" e_stop="53212"/>
          <exon e_start="53322" e_stop="53535"/>
          <exon e_start="53698" e_stop="53843"/>
          <exon e_start="53930" e_stop="54154"/>
          <exon e_start="54243" e_stop="54445"/>
          <exon e_start="54588" e_stop="54831"/>
          <exon e_start="54912" e_stop="55137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGCATTTCTTCTGCTTATGTTACTTTAAAAAATAAGTTATATATAGAGAGAGAGGACGTTACCTTCCTGTACACTCCAAAAATCATATTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTTAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTGGTTAGTATTTATCTCTCTATACATATCAATTGTACTATCGTTACGCATGAATAAAATTAAAATTAATTTGTATGATGAATTGACAGGTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAG</genome_strand>
        <mrna_strand>TAGTGCATTTCTTCTGCTTATGTTACTTTAAAAAATAAGTTATATATAGAGAGAGAGGACGTTACCTTCCTGTACACTCCAAAAATCATATTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAATTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG......................................................................................GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596176" ref_strand="+" ref_description="SGN-U596176 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|37962659|gb|AAR05646.1| (e_value=7e-12) alpha-DOX1 [Lycopersicon esculentum]; ">
      <seq>actctctggtgggacggaagtgttatttatggaagtaacgaggatttcttgaagaaagtaagaacatttagggacggaaaaatgaaattaggtggaaatggacccatccaagaagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="53012" stop="53729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53202" g_stop="53212" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53322" g_stop="53429" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="119" r_length="108" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U596176" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>119</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53202" e_stop="53212"/>
          <exon e_start="53322" e_stop="53429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGA</genome_strand>
        <mrna_strand>ACTCTCTGGTG.............................................................................................................GGACGGAAGTGTTATTTATGGAAGTAACGAGGATTTCTTGAAGAAAGTAAGAACATTTAGGGACGGAAAAATGAAATTAGGTGGAAATGGACCCATCCAAGAAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596177" ref_strand="-" ref_description="SGN-U596177 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|37962659|gb|AAR05646.1| (e_value=2e-73) alpha-DOX1 [Lycopersicon esculentum]; (*ATH) AT3G01420.1 (e_value=1e-61)  Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6... ; ">
      <seq>aatttatagggataaaaaaaaaagtgttcctaggtacaatgactttaaaaaaagaaagcttcaaattcctatttcgaaatgggaaaatttgacaaataataaaaaagcaatcaaaacacttggttaagtatatgatgatgatataaaaaagttggatttattagtgggactcatggcggaaaaaaaaattaaaggatttgccatttcaaaaacagccttcaacatattccttttcatggctataaggaggttaaaggcaaataaatttttcccaagcaatttcaacgatgagacatacacaaaaaaaggattagaatgggtgaatactactgaaagtttaaaaaatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttttctgtttgggatttttttccccaacctcataatcctattcccctctattttcgtgttcctcagtagtagacctcaaaatcatgtgtgtaactatttattaataccgtaatacgtacaagtttgtatttaaggtgtcttgttttatttcatcaaaataatatattgtatcttggtctgtgaaaataactattagttagtaattcgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="54286" stop="55579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54444" g_stop="54445" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54588" g_stop="54831" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="246" r_length="244" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54912" g_stop="55280" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="615" r_length="369" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U596177" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54444" e_stop="54445"/>
          <exon e_start="54588" e_stop="54831"/>
          <exon e_start="54912" e_stop="55280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATTA</genome_strand>
        <mrna_strand>AA..............................................................................................................................................TTTATAGGGATAAAAAAAAAAGTGTTCCTAGGTACAATGACTTTAAAAAAAGAAAGCTTCAAATTCCTATTTCGAAATGGGAAAATTTGACAAATAATAAAAAAGCAATCAAAACACTTGGTTAAGTATATGATGATGATATAAAAAAGTTGGATTTATTAGTGGGACTCATGGCGGAAAAAAAAATTAAAGGATTTGCCATTTCAAAAACAGCCTTCAACATATTCCTTTTCATGGCTATAAG................................................................................GAGGTTAAAGGCAAATAAATTTTTCCCAAGCAATTTCAACGATGAGACATACACAAAAAAAGGATTAGAATGGGTGAATACTACTGAAAGTTTAAAAAATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTTTCTGTTTGGGATTTTTTTCCCCAACCTCATAATCCTATTCCCCTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTTTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573999" ref_strand="+" ref_description="SGN-U573999 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|37962661|gb|AAR05647.1| (e_value=0) alpha-DOX2 [Lycopersicon esculentum]; (*ATH) AT3G01420.1 (e_value=0)  Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6... ; ">
      <seq>tgctgaagaatctcttgttctcccctcttcgtggtttcatccacaaagattttcatcagatacttgacaaaatgaatctccgcgacaaactttcatttctgatagttcatatcattgataaacataacttgtggcaccgggtaccggtgtttttagggctagtttatcttgcacttcgtcgacatcttaatcaggaatataatttgatcaacgtgggtagaacaccgagcggagtccgatcgaatccgggcgacttcccttatagaacagcagatggaaaatataatgatcctttcaatgaaggagcaggaagtgaattttctttctttgggaggaatatgatgcctgttgagcaacatgacaagttaaagaatccagatccaatggtagtggcaacaaagctgctagcacggagagaattcatagacactggaaaacaatttaacatgatagctgcatcatggatacagtttatgattcatgattggatcgatcatttggaagatactcaacagattgaggagcttagggcacctgaagaagttgcaagtcaatgtcctctcaagtcctttaagttttacaaatcaaaagaaactcctaccggattttacgaaattaaaaccggtcatttgaataggcgtaccccttggtgggatggaagtgttatttatgggagcaacgtagagatcttgaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaatttatagagacagagaaagaagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgacggatgatatggaagttattaaaacacttcatgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttacttatcgaaaatgaaatatgaagaattgtgtggtatatttccgtttttacgtaattgtttcagtttgttaaattaatgatgtgtatctatctatctttatttaatgtttcttgataagataattgtaatctttatattttatgtataatgttcttgtgttactcttcttatttaacgtcaaaaaactttttttttatatcaaaaaaaggggggcccgtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="63709" stop="67205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64009" g_stop="64109" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64110" i_stop="64246" i_length="137">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64247" g_stop="64510" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="365" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64511" i_stop="64602" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64603" g_stop="64752" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="515" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64753" i_stop="64819" i_length="67">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64820" g_stop="64956" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="652" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64957" i_stop="65046" i_length="90">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65047" g_stop="65260" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="866" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65326" g_stop="65471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="1012" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65551" g_stop="65778" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1013" r_stop="1240" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65854" g_stop="66056" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1241" r_stop="1443" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66057" i_stop="66126" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66127" g_stop="66370" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1444" r_stop="1687" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66449" g_stop="66904" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1688" r_stop="2142" r_length="455" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U573999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2143</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64009" e_stop="64109"/>
          <exon e_start="64247" e_stop="64510"/>
          <exon e_start="64603" e_stop="64752"/>
          <exon e_start="64820" e_stop="64956"/>
          <exon e_start="65047" e_stop="65260"/>
          <exon e_start="65326" e_stop="65471"/>
          <exon e_start="65551" e_stop="65778"/>
          <exon e_start="65854" e_stop="66056"/>
          <exon e_start="66127" e_stop="66370"/>
          <exon e_start="66449" e_stop="66904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTGGTAATCATTTATAGTCACTGAACCATTGATATATATATATATATATATGTATGTTGTTTTTATTGAGAAATTAAAAATGTGTCTGAAGAAAGAAAGATCAATATTATTAACCATATTCTGTGAACATGAATTTGCAGATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAGGTACGTACGTACGTACTATAACACTCACGAAATTCTATGGCATATTAATAAATGTTGTGTTTTTCAAATTTATAAAATGCATATGCATGCAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAATTCACAATTTAATTAATAATGACAAAGTTTTGTTAATTGTAACCATAAATTTTGAGTACAGATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTGGTAATAAGAATATTTTCCACAAAATATAGTATTATACTAATATGTGTATTTAAACGTTAAGTAATTTGTGTGTGTACAATACATGAAAAGGGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACAGAATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAAGTAAGTTTTTATTTTTATGCTAGAAACTTCAAATATGATTTCTCAAATCCTGAATCCATGTGATTTGCAGTTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</genome_strand>
        <mrna_strand>TGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG.........................................................................................................................................ATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG............................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG...................................................................ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG..........................................................................................GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA...........................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA......................................................................TTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAAC-TTTTTTTTTATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596178" ref_strand="+" ref_description="SGN-U596178 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15212228|gb|AAK85133.1| (e_value=5e-88) cyclooxygenase-like protein [Capsicum annuum]; (*ATH) AT3G01420.1 (e_value=3e-72)  Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6... ; ">
      <seq>tgaccctttaaaccgtatatatttatagcttgtagaaaattaaaccctttacatgggttttgttaatctttttctatttcctcttcgttgtttcattcacaaagattttcatgatgctgttgacaaaatgagtcttctcaacaaacttttgtttaggatggttcacttgattgataaattgaacctgtggcaccggctaccactgttcttggggctactttatctcacagcgcggagacatcttcatgagcaatataatttgatcaacgtccgtagaatatttactaccgatgttacatcaaatcgggacgatgaaaaatacaacaacgatccctttaatgaaggaggtggcagtgaattacctttgtttgggaggaatatgatgcctgttgatcaacatgaaaagttaaagaatccacatccaatggtagtggcaacaaaattgctagcacgcagaaaattcatcgatactggaaaacaatttaacatgatagctgcctcttggatacaatttatgattcatgattggatcgatcatttggaagatactctacagattgagctaagggcacctgaagaagttgcaagtgagtgtactctcaaggcctttaagtttttcacgaccaagcaaacacctacgggtttatgtgatatcaagactggtcacttgaacatacgtactccacagggggatggaagtgttatttatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="70489" stop="74908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70777" g_stop="70933" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70934" i_stop="71705" i_length="772">
            <donor d_prob="0.951" d_score="0.92"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71706" g_stop="71951" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="406" r_length="249" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71952" i_stop="74206" i_length="2255">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74207" g_stop="74356" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="556" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74457" g_stop="74590" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="690" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74656" g_stop="74679" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="714" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U596178" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70777" e_stop="70933"/>
          <exon e_start="71706" e_stop="71951"/>
          <exon e_start="74207" e_stop="74356"/>
          <exon e_start="74457" e_stop="74590"/>
          <exon e_start="74656" e_stop="74679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATGGTAATATATATATTCTTTACTAATCAAGTTAATTTTTTCTTTGTTTTCCACCCAAAATAAGTTTTTTAATGCTATTGAATTGAAGAATAATTTTTTAGATACCAAACATGAGCTAGTTGATTAAGAGGCCCATAGTTTTACAAAAATAATGACCTCTTTATCTGAATTTTTAACCAAATTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCATGGTAACGTTTTAGGGTATATTTTATTTTTTAAAAACTAACAACATTAGGTTGATACACGGTACTGTATAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTGTGAGTAACGTATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTATGGAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTATTTTGGTGAATGACTTTATATAATGGCTTAATTTGATTAAAACCTCTCTTTATCTCCACTAGGTAGTGGAGATAAGATATCTACGTACTGATCATTCCTTGTCATACCTTAGTTATGAGATTACATTGGATTTGATGTTTCGTAATTGGTTGCGTTCCTCGATTGTTCTGTTAATAAATTTATTTAATTTGCTATAGAGTCAAGTTATCACAATTGTTTTTAATTAAACCTATGGTGTACGTACGTAAATTTTAATTTAAATTGTGACATGCATGTAGATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAAT---ACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAGGTATAAACATTTTCTAATTTATCTACTCATTTCATAAATACTTGTAAGCTAAATTTTAACCAAAAGTTATATATTAGTCATCCCCAATTTATAGGGGCCTGTTGATATAATTGTTTGTGTTTATTTAAATATATAAATAATGAGTGTCATATTTACAATCTAAAAAATTGAACTCATTAGATATAAAATTTGGAATCCACCTTGCTAGACTTGGTAACGATTTTGATTTGATCAAGGTTTTACTTATTTAAGCGTTAGAGTCTGTTTGACATACTTATTGGAAGGTCAAAAGTGATTCTTTTTTTTAAAAAAAAAACATAGTATTTGACAAATCTTTCGAAGTGCTTTTAAATGAAAGCAAAAATTATTTTTCTGTTGGTGTAAATTAATAAGCTAAAAATTTCGTCTTTTCAACAAAAATAGGTTAAAAGCAGAAGAAGAAACTATCTTTTCCATATATACATATTTATGAATATACCCTTATTGATTAATTGACATATCTCATAATTTAATTAAGTTTCAATCAAAAAAAAAATATTTTATTTTCATTACCAGGATACTATTAAATTTACAAGTTTTATAAAATTAATTAAGGGTACATACTTCAATCATTCTAAGAAAGACAACTTATGGCACTTTTCATTTTTCCAAACACGTCATTATTGTTATTGAAAGGTTTAACTCATTGGTGGCCTCTTAAATTTGAAGCAAACTTTCACTTAGACGTCTTAATTAGATTTTATTTATTTTAGACACCTATATCATATTCTATTGTGTCATTTTGACACTTTTTGCTAACATGATATGGTGAGTATAATAAAATTATAAAAAGCACATGAAAGACATTTTAAACATATTTTTATTTAATTTTTTCCTTATTCTTTCCTATTTTTGGGCCACCATTTTCTCTATCTTAAGGTCCTTCACTGGTTAAAAGAGTTGAGAGTGATTTTAGAGTTGAATAAACCTCTCTACGTAGATTAGGTTTGATGGTTAAATTGGTGAAGAATTTATTGTTAAATCATGTCAGTTTAGATTATTTTGTTGAAAGTCAATATTACGACTTCACTAACAAATTTTTTTCTAGATTAGACAATTCATTGTGTGATATTTAGCCTTAATTACTTTCTCAAATTCTTCATTAAAATAACAGTCCTTAGTTTAGAAGCTGAATAAATGACCACTTTGTTAGTGTATAATGGAATCCTCTGACTAATAAAGCTAAAAAGCATTGAGATATGACGATCAACGGAGAAGACGAAGGGGGTTGGGTTTAATTCGTTAGAGAAGACGACTAGGGTTGGGGGTGGGGGGGGGGGAGTTATGTAAAGTAATTTCTTTTTTGAAAAAATAATTTATTCAAAGTTCATAATTAAAGAATTGTTTTTGTGTTAAAGAACAAACGTTTTCGTTTAATTTGGTATTTTGACACATCATCAGCGAGTGAGTTATACTCACTTTAAATTTTTGTTGACTATGAAAAAAGTATCAAAATGACACAATACAACATGATATAAAGCGTCTAAAATAAACAAAATCTAGTTAAGATGTTAGTCTAAATTTAAGAAATCACTGATGAGGTAGGCCTTATTGAAAATTGACAATATATACCCTTGATTGCCCGGCAAAAGGAAAATGACTGTGAGTACGTCTTTTTAGTAGCATCGTTTTCCTTGCTATCGACCGTTTTATATATATATATATCCTTGCATTGCATGTATGGTCCCAATTCACAAAACTTCATTTATAAAAATTGCAAGAAATTAAATTATAAATATGAACTAATGATAACTTTAAAGATATCATATATACAATACAAAAAAAATTAAAATTTAAATCCATAATAATACTTAAATTTGCCTTTGGGTGAATGCCAGGCATGACTAAAACAGTACTTGCAATGCACCATCTCATGATCTTATAAATAATTTATGTTAGTATAAAACTTAAATCAATTAAGCTGATTTGAGTCCCTTTTTCTTTAAAAATAAATTAAGCTGAATTTTCAAATGCTGAAATCAAATCAAACTAATTACATTAATTTTTAATATTTTATTTTATTTTTGTTTGTATTTTTGGTTACTTAACTTTTATCAATTTTTTTTAAAATATAAAATCAATGACTTTTTTTTGTGTGTGTGCGTGTGTGAGCAAAATTTAAAGATCTACTTGTGAGTTGTGATAATTTGAATTAAGCATTAATGATGAATAGTTTATCAAAAGAGAAATATGTAATTTTCTTTCTTAAATTACAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAG</genome_strand>
        <mrna_strand>TGACCCTTTAAACCGTATATATTTATAGCTTGTAGAAAATTAAACCCTTTACATGGGTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGCTGTTGACAAAATGAGTCTTCTCAACAAACTTTTGTTTAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCACTGTTCTTGGGGCTACTTTATCTCACAGCGCGGAGACATCTTCATGAGCAATATAATTTGATCAACGTCCGTAGAATATTTACTACCGATGTTACATCAAATCGGGACGATGAAAAATACAACAACGATCCCTTTAATGAAGGAGGTGGCAGTGAATTACCTTTGTTTGGGAGGAATATGATGCCTGTTGATCAACATGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAATCCACATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTTAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCTACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTACTCTCAAGGCCTTTAAGTTTTTCACGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACTGGTCACTTGAACATACGTACTCCACAGGG.................................................................GGATGGAAGTGTTATTTATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573998" ref_strand="+" ref_description="SGN-U573998 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|37962661|gb|AAR05647.1| (e_value=0) alpha-DOX2 [Lycopersicon esculentum]; (*ATH) AT3G01420.1 (e_value=0)  Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6... ; ">
      <seq>ttctagcttgtagaaaattaaactaacaacatgtcttttgttaatctttttctatttcctcttcgttgtttcattcacaaagattttcatgatgttgttgatagaatgagtcttctcaacaaacttttgtttatgatggttcacttgattgataaattgaacctgtggcaccggctaccagtgttcttggggctactttatctcgcagcacggcgacatcttcatcagcaatataatttgatcaacgtcgatagaacatttactatcgatgttacatcaaatcgggtcgtcgaaaaatacaacgacccctttaatgaaggatgtggcagtgaattacctttctttggtaggaatatgatgcctgttgttcaacatgaaaagttaaagaatccagatccaatggtagtggcaacaaaattgctagcacgcagaaaattcatcgatactggaaaacaattcaacatgatagctgcctcttggatacaatttatgattcatgattggatcgatcatttggaagatactcaacagattgagctaagggcacctgaagaagttgcaagtgagtgtcctctcaagtccttgaagtttttcaagaccaagcaaacacctacgggtttatgtgatatcaagacgggtcacttgaacatacgtactccacagtgggatggaagtgctatttatgggagcagatctgaagtttcaaagaaagtgaggacatttaaagacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatgcttgggctggacttgtaactctgcaagcgctctttgtacaagagcataatcttgtttgtgacaccttgaagaaagaatatccagaattgaaagatgaggagttgtatcgtcatgcaaaacgtgtcactgctgctgtaattgctaaaattcacaccatagattggacagttgaacttctcaatacagacacccttctagcaggaatgcgcgccaattggtatggattgttaggaaagaaattcaaggatacatttggtcatgttggaggttccattttaagtggttttgtgggaatgaagaaacctgaggatcatggagtgccttattccttaactgaggaatttacgagtgtctatcgaatgcatcaactcctgcctgatacacttgagctaagaaatatcgatgccacgcctggactaaacaaatctcttcctttgactaatgagtaaggcatcgcccctttcaaattattgtaagtagctcatttattcctaatctatttaattgcttattgaaactataggatcctgatggaagatctaattgggggtaaaggaaatgagaatctatcaagaattgggtttactaagcaaatggtttcaatgggacatcaagctagtggagctcttgaactttggaattatccgatatggatgagggatcttattgcccaagacgtcgatggaacagacaggccagatcatattgaccttgcagctcttgaaatttatagagacagagaaaggagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgagtgatgatatggaagttattaaaacacttaatgaagtatatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaagggatttgctatctctgagactgcctttttcatatttctaatcatggcatcaagaaggttagaggcagataaattcttcacgagctattacaatgaggagacatatacaaaaaaaggacttgaatgggtgaatacaactgaaagcttaaaagatgtactagatcgacattatccagagatgactgagaaatggatgaactccaacagcgccttttctgtttgggactcgtctccagaacctcacaatccaattccagtctactttcgcgttcctcggacataggctcaattatacttcaaatcaaaataaaaagaagtaatacgtgtgttgattagtttttacctgcaaatgtggaataagattccatgtactatcctcactacctgtttcaaggagtaagcagttttatgaaactattcagagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="70499" stop="76791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70799" g_stop="70933" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70934" i_stop="71705" i_length="772">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71706" g_stop="71951" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="381" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71952" i_stop="74206" i_length="2255">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74207" g_stop="74356" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="531" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74457" g_stop="74590" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="665" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74656" g_stop="74869" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="879" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74870" i_stop="74949" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74950" g_stop="75095" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="880" r_stop="1025" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75096" i_stop="75186" i_length="91">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75187" g_stop="75695" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1534" r_length="509" r_score="0.998"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75696" i_stop="75783" i_length="88">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75784" g_stop="76027" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1535" r_stop="1778" r_length="244" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="76028" i_stop="76130" i_length="103">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="76131" g_stop="76490" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1779" r_stop="2147" r_length="369" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2149" polyA_stop="2164"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U573998" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>2138</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70799" e_stop="70933"/>
          <exon e_start="71706" e_stop="71951"/>
          <exon e_start="74207" e_stop="74356"/>
          <exon e_start="74457" e_stop="74590"/>
          <exon e_start="74656" e_stop="74869"/>
          <exon e_start="74950" e_stop="75095"/>
          <exon e_start="75187" e_stop="75695"/>
          <exon e_start="75784" e_stop="76027"/>
          <exon e_start="76131" e_stop="76490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATGGTAATATATATATTCTTTACTAATCAAGTTAATTTTTTCTTTGTTTTCCACCCAAAATAAGTTTTTTAATGCTATTGAATTGAAGAATAATTTTTTAGATACCAAACATGAGCTAGTTGATTAAGAGGCCCATAGTTTTACAAAAATAATGACCTCTTTATCTGAATTTTTAACCAAATTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCATGGTAACGTTTTAGGGTATATTTTATTTTTTAAAAACTAACAACATTAGGTTGATACACGGTACTGTATAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTGTGAGTAACGTATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTATGGAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTATTTTGGTGAATGACTTTATATAATGGCTTAATTTGATTAAAACCTCTCTTTATCTCCACTAGGTAGTGGAGATAAGATATCTACGTACTGATCATTCCTTGTCATACCTTAGTTATGAGATTACATTGGATTTGATGTTTCGTAATTGGTTGCGTTCCTCGATTGTTCTGTTAATAAATTTATTTAATTTGCTATAGAGTCAAGTTATCACAATTGTTTTTAATTAAACCTATGGTGTACGTACGTAAATTTTAATTTAAATTGTGACATGCATGTAGATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAGGTATAAACATTTTCTAATTTATCTACTCATTTCATAAATACTTGTAAGCTAAATTTTAACCAAAAGTTATATATTAGTCATCCCCAATTTATAGGGGCCTGTTGATATAATTGTTTGTGTTTATTTAAATATATAAATAATGAGTGTCATATTTACAATCTAAAAAATTGAACTCATTAGATATAAAATTTGGAATCCACCTTGCTAGACTTGGTAACGATTTTGATTTGATCAAGGTTTTACTTATTTAAGCGTTAGAGTCTGTTTGACATACTTATTGGAAGGTCAAAAGTGATTCTTTTTTTTAAAAAAAAAACATAGTATTTGACAAATCTTTCGAAGTGCTTTTAAATGAAAGCAAAAATTATTTTTCTGTTGGTGTAAATTAATAAGCTAAAAATTTCGTCTTTTCAACAAAAATAGGTTAAAAGCAGAAGAAGAAACTATCTTTTCCATATATACATATTTATGAATATACCCTTATTGATTAATTGACATATCTCATAATTTAATTAAGTTTCAATCAAAAAAAAAATATTTTATTTTCATTACCAGGATACTATTAAATTTACAAGTTTTATAAAATTAATTAAGGGTACATACTTCAATCATTCTAAGAAAGACAACTTATGGCACTTTTCATTTTTCCAAACACGTCATTATTGTTATTGAAAGGTTTAACTCATTGGTGGCCTCTTAAATTTGAAGCAAACTTTCACTTAGACGTCTTAATTAGATTTTATTTATTTTAGACACCTATATCATATTCTATTGTGTCATTTTGACACTTTTTGCTAACATGATATGGTGAGTATAATAAAATTATAAAAAGCACATGAAAGACATTTTAAACATATTTTTATTTAATTTTTTCCTTATTCTTTCCTATTTTTGGGCCACCATTTTCTCTATCTTAAGGTCCTTCACTGGTTAAAAGAGTTGAGAGTGATTTTAGAGTTGAATAAACCTCTCTACGTAGATTAGGTTTGATGGTTAAATTGGTGAAGAATTTATTGTTAAATCATGTCAGTTTAGATTATTTTGTTGAAAGTCAATATTACGACTTCACTAACAAATTTTTTTCTAGATTAGACAATTCATTGTGTGATATTTAGCCTTAATTACTTTCTCAAATTCTTCATTAAAATAACAGTCCTTAGTTTAGAAGCTGAATAAATGACCACTTTGTTAGTGTATAATGGAATCCTCTGACTAATAAAGCTAAAAAGCATTGAGATATGACGATCAACGGAGAAGACGAAGGGGGTTGGGTTTAATTCGTTAGAGAAGACGACTAGGGTTGGGGGTGGGGGGGGGGGAGTTATGTAAAGTAATTTCTTTTTTGAAAAAATAATTTATTCAAAGTTCATAATTAAAGAATTGTTTTTGTGTTAAAGAACAAACGTTTTCGTTTAATTTGGTATTTTGACACATCATCAGCGAGTGAGTTATACTCACTTTAAATTTTTGTTGACTATGAAAAAAGTATCAAAATGACACAATACAACATGATATAAAGCGTCTAAAATAAACAAAATCTAGTTAAGATGTTAGTCTAAATTTAAGAAATCACTGATGAGGTAGGCCTTATTGAAAATTGACAATATATACCCTTGATTGCCCGGCAAAAGGAAAATGACTGTGAGTACGTCTTTTTAGTAGCATCGTTTTCCTTGCTATCGACCGTTTTATATATATATATATCCTTGCATTGCATGTATGGTCCCAATTCACAAAACTTCATTTATAAAAATTGCAAGAAATTAAATTATAAATATGAACTAATGATAACTTTAAAGATATCATATATACAATACAAAAAAAATTAAAATTTAAATCCATAATAATACTTAAATTTGCCTTTGGGTGAATGCCAGGCATGACTAAAACAGTACTTGCAATGCACCATCTCATGATCTTATAAATAATTTATGTTAGTATAAAACTTAAATCAATTAAGCTGATTTGAGTCCCTTTTTCTTTAAAAATAAATTAAGCTGAATTTTCAAATGCTGAAATCAAATCAAACTAATTACATTAATTTTTAATATTTTATTTTATTTTTGTTTGTATTTTTGGTTACTTAACTTTTATCAATTTTTTTTAAAATATAAAATCAATGACTTTTTTTTGTGTGTGTGCGTGTGTGAGCAAAATTTAAAGATCTACTTGTGAGTTGTGATAATTTGAATTAAGCATTAATGATGAATAGTTTATCAAAAGAGAAATATGTAATTTTCTTTCTTAAATTACAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAGGTACTAATCTTAGTGATCTTGGATTATTTTATTTTTTTCGAGTATTTTTACAACCTGAATTGATTTTCAAATTTTTCCAGAAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTGGTCAATAATCTCAAATTAACACAAGTTATTTTCATTTTGTCAACTACGTAGTACTGAGCATGACTCAAATGAATTAATTTTATGTTCGCAGGTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGAGTAAGGCATCGCCCCTTTCAAATTATTGTAAGTAGCTCATTTATTCCTAATCTATTTAATTGCTTATTGAAACTATAGGATCCTGATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTACAGTTTATTTCTCAGGACTAAAACTACTTCAAAATAAATAAATAAAACAGAGTATATATAATTGATATTGTTGTTTGGATGGCAGTTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAGGTTCGTACTAGAACTGAAAAAAAGAAGCAATTATCATTTATGCATAACAATATTATGCCTTTGTAGATTGACTAATATTGAAAGTTGATTTATAAATTTACAGAAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTC------A----AAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</genome_strand>
        <mrna_strand>TTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG.................................................................GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAG................................................................................AAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG...........................................................................................GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGAGTAAGGCATCGCCCCTTTCAAATTATTGTAAGTAGCTCATTTATTCCTAATCTATTTAATTGCTTATTGAAACTATAGGATCCTGATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCATATTGACCTTGCAGCTCTTGAAA........................................................................................TTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGATTTGCTATCTCTGAGACTGCCTTTTTCATATTTCTAATCATGGCATCAAG.......................................................................................................AAGGTTAGAGGCAGATAAATTCTTCACGAGCTATTACAATGAGGAGACATATACAAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGGACTCGTCTCCAGAACCTCACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAATTATACTTCAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGGAATAAGATTCCATGTACTATCCTCACTACCTGTTTCAAGGAGTAAGCAGTTTTATGAAACTA-TTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597553" ref_strand="+" ref_description="SGN-U597553 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115467534|ref|NP_001057366.1| (e_value=1e-17) Os06g0272900; (*ATH) AT3G28150.1 (e_value=3e-18) | Symbol: None | expressed protein | chr3:10473135-10474991 REVERSE | Aliases: MMG15.18; ">
      <seq>gctaaccatcacctactctagaaaaattaacccattcttcacttaaagtagaacaagcaccacatttctctctgtttctctcttctccttgttgttaatgtatatcaaatgaagatgaattttcacaattataatctatttaaagaggataagtttcgtagcccaggtttcttattgatctattcactctttctaaccgtgattttcagctgctacatgcttcatttttccttcagcccaaacgttaacttcataaccaaacaagattcagctcctcctactaaatcctcacacgttacaaatcactctcaacctgcagttcacaacaacattacatccgattgtgacttgttgaatggtaattgggttttagaggagaagggtaattattctctgtattatacaaactttagctgtccaacaattccgcattcaaaaaactgtttgttgaacggaagggcagatgaaggatttatgcagtggagatggaaaccagaagaatgtacgcttccgcgattcaatgctaaaacgtttttaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="79502" stop="78274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79203" g_stop="78885" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78884" i_stop="78796" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.693" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78795" g_stop="78574" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="541" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-U597553" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79203" e_stop="78885"/>
          <exon e_start="78795" e_stop="78574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAGGTAAGTAAGTTTTTTAATCACTTATTGTACGTATTTCTCACTAGTTTTACATTGGATGTCAACCTCGTCTTTGCTCATATTTTTGGCAGTTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTACGCTTCCGCGATTCAATGCTAAAACGTTTTTAACAT</genome_strand>
        <mrna_strand>GCTAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAG.........................................................................................TTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTACGCTTCCGCGATTCAATGCTAAAACGTTTTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567595" ref_strand="+" ref_description="SGN-U567595 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157345523|emb|CAO14821.1| (e_value=8e-35) unnamed; (*ATH) AT3G01410.1 (e_value=9e-36) | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5; ">
      <seq>taatcagcccaattgatgtttccggcaaaacagcccaaatatgcagtttcggatcaaaattagctgaaatattacacgacttcccaaaatgaaacttgagagatcagctactgacaaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataanattgtggggaagaatgttcaggaaaagaggatgcanatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatncntnctccctacntgcagngntcatgcatccttgantttganggggcttcnaaggggaatcctggnctagctggtgctggggctgtgctgcgtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80651" stop="85502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80951" g_stop="81140" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="341" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="500" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="560" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="660" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85108" g_stop="85202" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="755" r_length="95" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U567595" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80951" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAGCCCAATTGATGTTTCCGGCAAAACAGCCCAAATATGCAGTTTCGGATCAAAATTAGCTGAAATATTACACGACTTCCCAAAATGAAACTTGAGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATAT-CCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGC</genome_strand>
        <mrna_strand>TAATCAGCCCAATTGATGTTTCCGGCAAAACAGCCCAAATATGCAGTTTCGGATCAAAATTAGCTGAAATATTACACGACTTCCCAAAATGAAACTTGAGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAANATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAN.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATNCNT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NCTCCCTACNTGCAGNGNTCATGCATCCTTGANTTTGANGGGGCTTCNAAGGGGAATCCTGGNCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567596" ref_strand="+" ref_description="SGN-U567596 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157345523|emb|CAO14821.1| (e_value=7e-73) unnamed; (*ATH) AT3G01410.1 (e_value=2e-72) | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5; (*SWP) sp|P64955|Y2228_MYCTU (e_value=5e-13) Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium tuberculosis GN=Rv2228c; ">
      <seq>ggtgaagaaaatgccctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcaaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaatcttaggactaagatatgctcttgagaaaggtttcaaacacattaaagtcaagggcgattcgaaacttgtctgcatgcagactcaaggaatctggaaatgcaagaatcagaacatggctgagctatccaagattgttaaagagcttaaagatcagtttatgtctttccagatcaaccacatggacagagaatccaacactgaagccgatgcccaggcaaatttagccgtgtatctcaagaatggcgaaattcaagtggaatgtgacatgataacttaattaagtcaccaactactacctcaacttgttgggatttaggaaatgatgaatgaccgccaagacagaccaatttggatattcagttgtctgaaactacacttgtaacatgtagatatatgatctgaattatgtgcatgtaacctaattatgtatctggattgaaagtagcttctgctgtaacctaatttgcaatgaaaattggttgggacaagtacaccaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80754" stop="88024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81066" g_stop="81140" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="297" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="456" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="516" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="615" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85108" g_stop="85215" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="723" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85296" g_stop="85439" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="867" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="85440" i_stop="86818" i_length="1379">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.518" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86819" g_stop="86926" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="975" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="86927" i_stop="87343" i_length="417">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="87344" g_stop="87395" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1027" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="87396" i_stop="87464" i_length="69">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="87465" g_stop="87724" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1028" r_stop="1287" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U567596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1216</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81066" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85215"/>
          <exon e_start="85296" e_stop="85439"/>
          <exon e_start="86819" e_stop="86926"/>
          <exon e_start="87344" e_stop="87395"/>
          <exon e_start="87465" e_stop="87724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCACCCCCCCCCCAAAAAAAAAAAAAAAACCACCATACACACACAAAGATAAATGAATGTGTGTGTATAATTCATTTAATCATAATTCATAGTCATAGCAAAATCAACCGAATGTAACATCAACAATACTTTCAGTTCTATAAAGGTCTCTCCGGCTGCTTTTTAATGCACAATGTTATCATTTTTTTTCTTGTTTTTTCAAGCACTAACCATGTCTTCACCTCAACTTTTTCCTCACGAATTGTAATTCTGCATATCATCTTTTTCCTTTTGATGAGTCAGTTGATTAGGCCAGCTACATAAAAACATGAAATACTATGATAAAAAAGAGAGAGAGATGATCAAAGAAGGCTTTTAAACAGAAATGACAAAACCTAAGCAATATCCACCAAGTTTTGAATTGTGCATCACTGGCCCTCGAGGATTTCTCGGTTATAATTAGAAAATGGCAAAGCTAAGAGCTGTTGTGGCATAAAAGAATGCAGCAGCTGGCTAGCAGTTTGGCAACCCGCATTGTGTTGTGAAAACTTGCTTCTCAATATCCCAATTTGAATCCCGGAGAACATATGGTGTAGGTTAATGATTAATTCAAGAAACTTATTTTACTTGGCTTTTATTTTGGCTTTATTACCAAATGCCTAAGATTTTACAGTGACAGGTTTAGGAGCGACTATAAAGACCCTATAGGATTTGAGACATATTCAGCCTATATGTAATTTGATAGGAATTATGGGATGGCATAGCTTGCCTTCTTGATGGTACCTCATCCTATCCATCCCAAGAGACACCTAAACCAGTTTAAAAGTGAAGCTATTCTTCCCTTGCAACCTATGTGATCTTACGCTGAGATCATATGTGCTTTTGCCGTGCTATTTATATTTTTTTCAGTTTTATGTTTTAGCTGGAACTGCTTCTGGGCCGGTCTCTTGTTTTTACAAATTTCTTCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGAGTATGGCCAATTTTTCCTCTTTTGCTAATTTGAAGCTCACTGAGCTGGTCTATCAGAATTTTGATTTTCGAAGTCCTTATTATATCTTGCAACTGCATGTTGTTTTTGTGATAAATATGGAGTAGTGTGGTCTCCTGTGACCAAAAGAGGTGCAAGCGGTGGTACCTGGACGTCATGTTTAATTTATGCAATATATATAGTTTCTCTTTTCTTGCTAAGCTGTTCTTCGAAATTGATTTTATCACCTTGTTGCTAGAAGTGAATAATCATGCTTCCCTAGTCAATCAATTCACTCTGTTCTGGTTGCTCTGCATGAACAGTTCAGAATTTTTCTGCACATAATTGTTCCGTTCTTTTTAATCATTTAAAGCCTTTTTTCATCCAATTCCAAGGGTTTTTACTTGTTTAACATATCAGGAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGAGTAAGGGTCTTTTGTCTTGTGAGTTTCTCTTTTTCCGTGAGAAATCTAATAAGAAATATTTTGTTGCAGATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACCAGGC</genome_strand>
        <mrna_strand>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA.....................................................................ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596127" ref_strand="+" ref_description="SGN-U596127 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345523|emb|CAO14821.1| (e_value=9e-26) unnamed; (*ATH) AT3G01410.1 (e_value=5e-27) | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5; ">
      <seq>atatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttcaaagtggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgnatacagaggcgtaatcttaggactaanatatgctcttgagaaaggtttcaaacacattaaagtcangggcgattcgaaacttgtctgcatgcanactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80954" stop="85738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81254" g_stop="81527" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81528" i_stop="83764" i_length="2237">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="334" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="433" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85123" g_stop="85215" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="526" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85296" g_stop="85435" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="666" r_length="140" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U596127" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81254" e_stop="81527"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85123" e_stop="85215"/>
          <exon e_start="85296" e_stop="85435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCAT</genome_strand>
        <mrna_strand>ATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGTGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGNATACAGAGGCGTAATCTTAGGACTAANATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCANGGGCGATTCGAAACTTGTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602385" ref_strand="+" ref_description="SGN-U602385 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgattcgaaacttgtctgcatgcaggtcttctttctctacttcttacagctgttttttttagttttattcatttttaatttgcttttagtaaattagtcaatttttctgctttctcactttaaatatcctgtcaaatttgtatatcttcagtaatttattgaaatcactgatttctaaaacaattgctgaagagtcttttcaattgagtgtcagagacatattcattgaactgggctacaccaacagaaagtggaccgttcaatataaggagacacatggtttttaaccaactagtttttggacatgtacatcccaaattaactagaatatgattttgcataatcacataaaattattgaaaaatatttttgagtaacaaaacacacattaattaagattcatgaatgtgattcttcatttgggacttcatggttgagcccccctcccccccccccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="85115" stop="86176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85415" g_stop="85875" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U602385" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85415" e_stop="85875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCACCCCCCCCC</genome_strand>
        <mrna_strand>CGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCCCCCCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567594" ref_strand="+" ref_description="SGN-U567594 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157345523|emb|CAO14821.1| (e_value=3e-83) unnamed; (*ATH) AT3G01410.1 (e_value=2e-78) | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5; (*SWP) sp|P64955|Y2228_MYCTU (e_value=2e-18) Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium tuberculosis GN=Rv2228c; ">
      <seq>gcaagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcacccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggaccttctctggtattagtttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaactattctagccccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="87840" stop="95614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88139" g_stop="88178" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88469" g_stop="88618" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="190" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="349" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="409" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91469" g_stop="91567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="508" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91568" i_stop="92870" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92871" g_stop="92978" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="616" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93058" g_stop="93201" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="760" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93202" i_stop="94379" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94380" g_stop="94487" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="868" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429">
            <donor d_prob="0.740" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94917" g_stop="94968" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="920" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="94969" i_stop="95035" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="95036" g_stop="95314" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="921" r_stop="1199" r_length="279" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U567594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88139" e_stop="88178"/>
          <exon e_start="88469" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91567"/>
          <exon e_start="92871" e_stop="92978"/>
          <exon e_start="93058" e_stop="93201"/>
          <exon e_start="94380" e_stop="94487"/>
          <exon e_start="94917" e_stop="94968"/>
          <exon e_start="95036" e_stop="95314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTG</genome_strand>
        <mrna_strand>GCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCACCCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGACCTTCTCTGGTATTAGTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCCCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602874" ref_strand="+" ref_description="SGN-U602874 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gattttacctaacaattctttgtatcaatacgtttaaattcttgtcattgtctgctttatctggatgttgacattcttggggtggggtgagggtggtgatttggtgggtggttagccttggaaagggcttgctcctatgttttgactttattctgctgctggccgaaactagtgaggatagtgatgcgtattggagctgatttggaaaataaaaggttgagaagtcctgattcggcaaccactgatccaagggggaccaagtgattcttaaatcaaactgtaagggcaaagtggaacattgttggttaacgttgcgcaaaagtccaaagttggaagatggtgacaaaatttatatgtaatctatgttgctgggattctccaagaaatagtgctgcacccatgctagatcctccaaaatgcactacttttgaaggattcgacatgctctcatcaacattttagagtccgagcaacataacttgtattaagtttattttagaatgtaaggggtcgtttggtacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="91279" stop="92402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91578" g_stop="92102" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-U602874" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91578" e_stop="92102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAA</genome_strand>
        <mrna_strand>GATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1783" PGL_stop="918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1783" e_stop="1131"/>
            <exon e_start="1058" e_stop="918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1783" e_stop="1131" e_length="653"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="1130" i_stop="1059" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="1058" e_stop="918" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1783" stop="1131"/>
              <exon start="1058" stop="918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATTTTCAATGGCAGTAAAGGAAGCTTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA : ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAAGGTTATTCGTTATTTTCCCATTAAATCAGCAGATTATCAAAACT</gDNA_template>
            <first_frame> T  I  F  N  G  S  K  G  S  F  D  E  K  R  S  F  N  G  T  L  L  I  H  S  S  F  F  S  S  A  N  F  H  S  L  F  H  S  *  Y  K  K  I  I  G  I  C  C  V  F  Q  K  R  D  N  L  P  E  S  D  F  D  I  G  L  R  H  G  R  *  L  E  Y  L  Q  S  R  R  L  T  S  V  I  Y  S  N  L  *  R  T  N  H  F  R  T  M  C  H  G  G  A  K  F  S  I  Q  T  A  I  S  S  I  A  G  T  M  S  S  S  L  P  V  S  S  L  F  S  S  I  H  S  T  S  T  Y  L  S  S  A  I  E  L  V  C  P  L  M  T  K  P  P  V  K  L  P  S  I  V  L  S  P  T  S  F  T  S  F  T  L  P  *  S  S  A  Q  L  L  L  L  L  A  L  G  F  S  A  G  V  S  L  L  W  I  P  V  K  L  L  Y  D  I  S  K  L  I  S  S  L  I  L  Q  L  L  F  P  C  L  K :   L  L  F  A  M  *  S  Q  Q  P  K  E  M  V  R  V  I  P  K  V  H  L  H  L  S  F  S  Y  N  M  C  Q  G  Y  S  L  F  S  H  *  I  S  R  L  S  K   </first_frame>
            <second_frame>  Q  F  S  M  A  V  K  E  A  L  M  K  K  G  A  S  M  E  H  S  *  F  I  L  P  S  F  L  A  L  I  F  T  H  C  F  I  H  N  T  K  K  L  L  E  S  V  V  F  S  R  R  E  T  I  F  R  N  P  I  L  I  S  D  S  A  M  E  D  D  *  N  I  C  K  A  G  V  S  P  P  S  F  T  A  I  F  E  E  Q  I  I  F  E  R  C  A  M  V  A  P  N  S  R  S  K  Q  R  Y  R  Q  S  L  E  L  C  L  P  P  Y  L  S  H  L  S  F  H  R  S  T  L  L  L  R  T  F  R  Q  R  *  S  L  Y  V  H  *  *  R  S  R  P  *  N  Y  H  L  S  F  S  H  R  H  L  L  L  P  S  H  C  H  E  V  P  H  S  F  C  C  S  *  L  *  G  F  R  P  G  *  A  C  Y  G  S  P  *  N  C  Y  T  I  S  Q  N  *  F  H  R  *  F  Y  S  C  S  S  P  A  S   : N  C  Y  S  L  C  N  P  S  S  Q  K  K  W  F  G  S  F  Q  K  Y  T  C  T  Y  R  S  H  T  I  C  A  K  V  I  R  Y  F  P  I  K  S  A  D  Y  Q  N  </second_frame>
            <third_frame>   N  F  Q  W  Q  *  R  K  L  *  *  K  K  E  L  Q  W  N  T  L  N  S  F  F  L  L  F  *  R  *  F  S  L  T  V  S  F  I  I  Q  K  N  Y  W  N  L  L  C  F  P  E  E  R  Q  S  S  G  I  R  F  *  Y  R  T  P  P  W  K  M  T  R  I  F  A  K  P  A  S  H  L  R  H  L  Q  Q  S  L  K  N  K  S  F  S  N  D  V  P  W  W  R  Q  I  L  D  P  N  S  D  I  V  N  R  W  N  Y  V  F  L  L  T  C  L  I  S  L  F  I  D  P  L  Y  F  Y  V  P  F  V  S  D  R  A  C  M  S  T  D  D  E  A  A  R  E  I  T  I  Y  R  S  L  T  D  I  F  Y  F  L  H  I  A  M  K  F  R  T  A  F  V  A  P  S  S  R  V  F  G  R  G  E  L  V  M  D  P  R  E  I  A  I  R  Y  L  K  T  D  F  I  V  D  F  T  A  A  L  P  L  P  Q  :  I  V  I  R  Y  V  I  P  A  A  K  R  N  G  S  G  H  S  K  S  T  L  A  L  I  V  L  I  Q  Y  V  P  R  L  F  V  I  F  P  L  N  Q  Q  I  I  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1598" stop="1131"/>
                    <exon start="1058" stop="918"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTPPWKMTRIFAKPASHLRHLQQSLKNKSFSNDVPWWRQILDPNSDIVNRWNYVFLLTCLISLFIDPLYFYVPFVSDRACMSTDDEAAREITIYRSLTDIFYFLHIAMKFRTAFVAPSSRVFGRGELVMDPREIAIRYLKTDFIVDFTAALPLPQIVIRYVIPAAKRNGSGHSKSTLALIVLIQYVPRLFVIFPLNQQIIKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10819" PGL_stop="11634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10819" e_stop="11427"/>
            <exon e_start="11514" e_stop="11634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10819" e_stop="11427" e_length="609"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.843">
            <gDNA_intron_boundary i_start="11428" i_stop="11513" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="11514" e_stop="11634" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10819" stop="11427"/>
              <exon start="11514" stop="11634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCTTCTTGCTCTGCACCTTACTGGTAAATTTCTTACCCTCTACCTGGCCCCCACTCAAAAATATTCTACGACTCCATTAGAGAAGCTCCAGCCAAGAAACAAAAGTGGGTGTGGTAGATAACCCAAATCTCACACATTAATATGGATTGAGGCCACCCTTCTTGTTTTGAAAGTATAATATTGGGTTCTTGTCATATAAAAAGTTGAGATTTTTATATTCCATTGTGTGATATTAATAAGGATTAGTGTCACATATATGTATATATATTTTTTGTCATCATTTATTCCATTTGTATAAAAAGAAAAAGCAGCTACTTCCAATTTCCCACCAACTTTTTGTTCCTCGTCCCAATACTATCATCTTTGTTTTTTTCCCTGTGGTGTTTTGTGTCTGTCCCTTTGATCTTCTTTCCTGTGGGTCACTCAATTGCTCAGTCCACTCATAAAATTCTTGGATTTTGCTTCCAATATCTTCAAATTAAGGGAACCACTACCCATTTATTGGGTCATTAATTTCTTCAAGATTATAGTATGAGCTTCTCTTCAAGTGTTTGATAACTCCAGTAATGGATATTGAAAGTTGGGGCCGTCAAAATCCCATAAAG : AAAGAATCATGGAGGACTGTAATAGCTTTAGCTTATCAGAGTTTAGGTGTGGTTTATGGAGATTTGAGTACTTCACCTCTATATGTATACAAGAGCACTTTCGCAGAGGACATTCAACATT</gDNA_template>
            <first_frame> P  T  F  L  L  C  T  L  L  V  N  F  L  P  S  T  W  P  P  L  K  N  I  L  R  L  H  *  R  S  S  S  Q  E  T  K  V  G  V  V  D  N  P  N  L  T  H  *  Y  G  L  R  P  P  F  L  F  *  K  Y  N  I  G  F  L  S  Y  K  K  L  R  F  L  Y  S  I  V  *  Y  *  *  G  L  V  S  H  I  C  I  Y  I  F  C  H  H  L  F  H  L  Y  K  K  K  K  Q  L  L  P  I  S  H  Q  L  F  V  P  R  P  N  T  I  I  F  V  F  F  P  V  V  F  C  V  C  P  F  D  L  L  S  C  G  S  L  N  C  S  V  H  S  *  N  S  W  I  L  L  P  I  S  S  N  *  G  N  H  Y  P  F  I  G  S  L  I  S  S  R  L  *  Y  E  L  L  F  K  C  L  I  T  P  V  M  D  I  E  S  W  G  R  Q  N  P  I  K  :  K  E  S  W  R  T  V  I  A  L  A  Y  Q  S  L  G  V  V  Y  G  D  L  S  T  S  P  L  Y  V  Y  K  S  T  F  A  E  D  I  Q  H  </first_frame>
            <second_frame>  P  P  S  C  S  A  P  Y  W  *  I  S  Y  P  L  P  G  P  H  S  K  I  F  Y  D  S  I  R  E  A  P  A  K  K  Q  K  W  V  W  *  I  T  Q  I  S  H  I  N  M  D  *  G  H  P  S  C  F  E  S  I  I  L  G  S  C  H  I  K  S  *  D  F  Y  I  P  L  C  D  I  N  K  D  *  C  H  I  Y  V  Y  I  F  F  V  I  I  Y  S  I  C  I  K  R  K  S  S  Y  F  Q  F  P  T  N  F  L  F  L  V  P  I  L  S  S  L  F  F  S  L  W  C  F  V  S  V  P  L  I  F  F  P  V  G  H  S  I  A  Q  S  T  H  K  I  L  G  F  C  F  Q  Y  L  Q  I  K  G  T  T  T  H  L  L  G  H  *  F  L  Q  D  Y  S  M  S  F  S  S  S  V  *  *  L  Q  *  W  I  L  K  V  G  A  V  K  I  P  *  R :   K  N  H  G  G  L  *  *  L  *  L  I  R  V  *  V  W  F  M  E  I  *  V  L  H  L  Y  M  Y  T  R  A  L  S  Q  R  T  F  N  I </second_frame>
            <third_frame>   H  L  L  A  L  H  L  T  G  K  F  L  T  L  Y  L  A  P  T  Q  K  Y  S  T  T  P  L  E  K  L  Q  P  R  N  K  S  G  C  G  R  *  P  K  S  H  T  L  I  W  I  E  A  T  L  L  V  L  K  V  *  Y  W  V  L  V  I  *  K  V  E  I  F  I  F  H  C  V  I  L  I  R  I  S  V  T  Y  M  Y  I  Y  F  L  S  S  F  I  P  F  V  *  K  E  K  A  A  T  S  N  F  P  P  T  F  C  S  S  S  Q  Y  Y  H  L  C  F  F  P  C  G  V  L  C  L  S  L  *  S  S  F  L  W  V  T  Q  L  L  S  P  L  I  K  F  L  D  F  A  S  N  I  F  K  L  R  E  P  L  P  I  Y  W  V  I  N  F  F  K  I  I  V  *  A  S  L  Q  V  F  D  N  S  S  N  G  Y  *  K  L  G  P  S  K  S  H  K   : E  R  I  M  E  D  C  N  S  F  S  L  S  E  F  R  C  G  L  W  R  F  E  Y  F  T  S  I  C  I  Q  E  H  F  R  R  G  H  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11069" stop="11335"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHIYVYIFFVIIYSICIKRKSSYFQFPTNFLFLVPILSSLFFSLWCFVSVPLIFFPVGHSIAQSTHKILGFCFQYLQIKGTTTHLLGH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11062" stop="11268"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLVSHICIYIFCHHLFHLYKKKKQLLPISHQLFVPRPNTIIFVFFPVVFCVCPFDLLSCGSLNCSVHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11353" stop="11427"/>
                    <exon start="11514" stop="11633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YELLFKCLITPVMDIESWGRQNPIKKESWRTVIALAYQSLGVVYGDLSTSPLYVYKSTFAEDIQH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11952" PGL_stop="14905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11952" e_stop="11997"/>
            <exon e_start="12243" e_stop="12296"/>
            <exon e_start="14086" e_stop="14346"/>
            <exon e_start="14474" e_stop="14526"/>
            <exon e_start="14787" e_stop="14905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.171" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.114" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11952" e_stop="11997" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11998" i_stop="12242" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12243" e_stop="12296" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.171" acc_prob="0.817">
            <gDNA_intron_boundary i_start="12297" i_stop="14085" i_length="1789"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14086" e_stop="14346" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.114" acc_prob="0.984">
            <gDNA_intron_boundary i_start="14347" i_stop="14473" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14474" e_stop="14526" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14527" i_stop="14786" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="14787" e_stop="14905" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11952" stop="11997"/>
              <exon start="12243" stop="12296"/>
              <exon start="14086" stop="14346"/>
              <exon start="14474" stop="14526"/>
              <exon start="14787" stop="14905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGTATGGTTATCGGTGATGGAGTCCTTACGCCTGCAATCTCAG : TGTTCTCTGCTGTCTCTGGACTAGAACTTTCAATGGCAAAGCATCATCACCAAT : ATGTAGAAGTTCCAGTTGCTTGTGTCATACTTGTGTTCTTATTTTTTCTCCAACATTATGGGACACATCGACTAGGATTTCTATTTGCACCGATTGTGATTACGTGGCTTTTGTGCATTAGTGCAATCGGGGTGTACAACATCATCCACTGGAATCCCCATGTTTACCAAGCATTATCTCCATACTACATGTACAAATTCTTGAAGAAGACCCAAAGAGGAGGATGGATGTCACTGGGTGGGATTTTATTATGTATAACAG : GTTCAGAGGCTATGTTTGCTGATCTTGGACACTTCTCACAGCTGTCTATTAAG : ATAGCTTTTACCTTTGTTGTTTACCCATCATTAATTCTTGCTTATATGGGACAAGCTGCGTATCTTTCCAAGCATCACGTTATCGCAAGTGATTACCACATTGGGTTCTATGTATCAGT</gDNA_template>
            <first_frame> T  C  M  V  I  G  D  G  V  L  T  P  A  I  S   : V  F  S  A  V  S  G  L  E  L  S  M  A  K  H  H  H  Q   : Y  V  E  V  P  V  A  C  V  I  L  V  F  L  F  F  L  Q  H  Y  G  T  H  R  L  G  F  L  F  A  P  I  V  I  T  W  L  L  C  I  S  A  I  G  V  Y  N  I  I  H  W  N  P  H  V  Y  Q  A  L  S  P  Y  Y  M  Y  K  F  L  K  K  T  Q  R  G  G  W  M  S  L  G  G  I  L  L  C  I  T   : G  S  E  A  M  F  A  D  L  G  H  F  S  Q  L  S  I  K  :  I  A  F  T  F  V  V  Y  P  S  L  I  L  A  Y  M  G  Q  A  A  Y  L  S  K  H  H  V  I  A  S  D  Y  H  I  G  F  Y  V  S   </first_frame>
            <second_frame>  L  V  W  L  S  V  M  E  S  L  R  L  Q  S  Q  :  C  S  L  L  S  L  D  *  N  F  Q  W  Q  S  I  I  T  N  :  M  *  K  F  Q  L  L  V  S  Y  L  C  S  Y  F  F  S  N  I  M  G  H  I  D  *  D  F  Y  L  H  R  L  *  L  R  G  F  C  A  L  V  Q  S  G  C  T  T  S  S  T  G  I  P  M  F  T  K  H  Y  L  H  T  T  C  T  N  S  *  R  R  P  K  E  E  D  G  C  H  W  V  G  F  Y  Y  V  *  Q  :  V  Q  R  L  C  L  L  I  L  D  T  S  H  S  C  L  L  R :   *  L  L  P  L  L  F  T  H  H  *  F  L  L  I  W  D  K  L  R  I  F  P  S  I  T  L  S  Q  V  I  T  T  L  G  S  M  Y  Q  </second_frame>
            <third_frame>   L  Y  G  Y  R  *  W  S  P  Y  A  C  N  L  S :   V  L  C  C  L  W  T  R  T  F  N  G  K  A  S  S  P  I :   C  R  S  S  S  C  L  C  H  T  C  V  L  I  F  S  P  T  L  W  D  T  S  T  R  I  S  I  C  T  D  C  D  Y  V  A  F  V  H  *  C  N  R  G  V  Q  H  H  P  L  E  S  P  C  L  P  S  I  I  S  I  L  H  V  Q  I  L  E  E  D  P  K  R  R  M  D  V  T  G  W  D  F  I  M  Y  N  R :   F  R  G  Y  V  C  *  S  W  T  L  L  T  A  V  Y  *   : D  S  F  Y  L  C  C  L  P  I  I  N  S  C  L  Y  G  T  S  C  V  S  F  Q  A  S  R  Y  R  K  *  L  P  H  W  V  L  C  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11952" stop="11997"/>
                    <exon start="12243" stop="12296"/>
                    <exon start="14086" stop="14346"/>
                    <exon start="14474" stop="14526"/>
                    <exon start="14787" stop="14903"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCMVIGDGVLTPAISVFSAVSGLELSMAKHHHQYVEVPVACVILVFLFFLQHYGTHRLGFLFAPIVITWLLCISAIGVYNIIHWNPHVYQALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTFVVYPSLILAYMGQAAYLSKHHVIASDYHIGFYVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="16435" PGL_stop="16978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16435" e_stop="16978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16435" e_stop="16978" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16435" stop="16978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGC</gDNA_template>
            <first_frame> L  G  Q  L  Q  H  T  L  M  G  *  E  Y  A  R  T  T  E  S  *  L  M  *  I  Q  K  *  *  R  S  A  R  Q  K  F  H  E  K  E  *  D  F  W  C  L  R  A  H  K  W  M  Q  V  F  A  K  S  C  K  N  L  W  K  L  G  K  Q  G  W  H  L  Y  L  V  I  V  M  L  E  L  K  G  V  Q  V  *  *  K  S  W  *  L  T  *  D  M  T  F  *  E  E  I  V  V  D  Q  H  M  H  *  A  S  L  K  L  Q  H  W  R  L  E  *  S  T  M  Y  N  L  C  F  T  F  F  L  I  K  G  *  N  C  S  I  C  F  L  F  F  F  V  F  Q  I  R  K  A  L  *  M  L  *  W  Y  T  S  F  C  F  I  Q  G  N  K  L  K  G  N  T  E  L  *  R  </first_frame>
            <second_frame>  W  D  N  F  N  T  H  *  W  D  K  N  M  R  G  Q  R  R  V  D  S  C  R  Y  R  N  D  R  D  Q  L  A  R  S  S  T  K  K  S  K  I  S  G  A  *  E  P  T  N  G  C  K  C  S  R  R  V  A  R  T  Y  G  S  *  G  S  R  D  G  I  Y  T  W  S  L  L  C  *  S  *  K  G  F  K  F  D  K  K  A  G  D  *  H  R  I  *  L  F  K  K  K  L  S  W  T  N  I  C  I  E  L  P  S  S  F  N  I  G  G  W  N  D  L  P  C  I  I  Y  A  L  L  F  F  *  L  K  D  R  I  V  A  Y  V  F  C  F  F  L  Y  F  K  F  E  K  L  C  K  C  C  N  G  T  R  V  F  A  L  Y  K  A  I  N  *  K  E  I  L  N  F  R  G </second_frame>
            <third_frame>   G  T  T  S  T  H  I  D  G  I  R  I  C  E  D  N  G  E  L  T  H  V  D  T  E  M  I  E  I  S  S  P  E  V  P  R  K  R  V  R  F  L  V  P  E  S  P  Q  M  D  A  S  V  R  E  E  L  Q  E  L  M  E  A  R  E  A  G  M  A  F  I  L  G  H  C  Y  V  R  A  K  R  G  S  S  L  I  K  K  L  V  I  N  I  G  Y  D  F  L  R  R  N  C  R  G  P  T  Y  A  L  S  F  P  Q  A  S  T  L  E  V  G  M  I  Y  H  V  *  F  M  L  Y  F  F  S  N  *  R  I  E  L  *  H  M  F  F  V  F  F  C  I  S  N  S  K  S  F  V  N  V  V  M  V  H  E  F  L  L  Y  T  R  Q  *  I  K  R  K  Y  *  T  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16437" stop="16814"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTTSTHIDGIRICEDNGELTHVDTEMIEISSPEVPRKRVRFLVPESPQMDASVREELQELMEAREAGMAFILGHCYVRAKRGSSLIKKLVINIGYDFLRRNCRGPTYALSFPQASTLEVGMIYHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21262" PGL_stop="22117"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21262" e_stop="22117"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="21262" e_stop="22117" e_length="856"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21262" stop="22117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGTTCGATCCAGGTACAACTACAGCACGCGTTACTCATTCTGATGGTAATAGCTAGACGACCATTGCGAAAAACATCAACTTGTACTCTGTCTGGATTTCACTTGTTGTATCTTTCATAGGGAAATGGATATGATCATAGAAAACAGCACCAACAAAGTATATGAATTCTGAATTTCTTTTGTAATCCATAACTTATAGTGAATCTTTTTGAG</gDNA_template>
            <first_frame> S  E  A  C  N  I  H  H  I  R  E  I  *  S  Q  *  G  L  P  *  F  R  Q  K  M  N  T  R  N  R  M  K  T  C  F  Y  H  *  E  G  L  L  *  T  L  V  R  L  W  L  K  Y  L  E  E  C  S  Q  V  S  E  R  T  V  T  P  I  M  Y  S  S  T  T  I  T  I  T  N  N  R  V  H  G  Q  C  R  K  A  M  *  F  E  M  K  M  R  P  H  P  L  I  P  E  T  L  H  P  E  K  P  I  Q  S  *  T  K  T  R  R  N  H  D  I  S  D  K  V  N  H  I  M  *  D  G  M  A  M  H  M  G  M  A  I  F  S  N  N  N  I  N  I  N  N  S  F  F  H  K  C  I  S  I  T  T  S  T  S  H  Q  V  L  K  H  T  T  R  K  A  V  K  R  K  R  L  C  L  E  Q  F  K  N  R  M  D  D  M  K  Q  W  *  *  K  Q  L  I  M  G  I  L  L  I  T  I  T  T  F  D  P  G  T  T  T  A  R  V  T  H  S  D  G  N  S  *  T  T  I  A  K  N  I  N  L  Y  S  V  W  I  S  L  V  V  S  F  I  G  K  W  I  *  S  *  K  T  A  P  T  K  Y  M  N  S  E  F  L  L  *  S  I  T  Y  S  E  S  F  *  </first_frame>
            <second_frame>  Q  R  H  A  T  S  T  I  S  E  K  Y  E  V  S  E  A  S  H  N  S  A  R  R  *  I  R  E  T  G  *  K  P  V  S  I  T  R  K  A  C  Y  E  H  W  F  D  C  G  *  N  I  W  R  N  V  L  R  F  Q  K  E  Q  L  P  P  S  C  T  A  A  L  P  L  Q  S  Q  T  I  E  Y  M  A  N  A  G  K  L  C  N  S  R  *  R  *  G  P  T  P  *  Y  Q  R  P  Y  T  P  K  N  L  S  N  H  E  Q  R  P  G  E  T  T  T  Y  Q  T  K  S  I  T  L  C  R  M  E  W  Q  C  T  W  A  W  Q  F  S  A  T  T  T  S  T  S  T  T  V  S  S  T  S  V  S  A  S  R  Q  A  P  V  I  K  S  S  N  I  L  R  G  K  L  *  N  E  R  D  C  V  W  S  S  S  R  T  G  W  T  T  *  N  N  G  D  K  S  S  *  L  W  G  S  C  L  *  Q  S  Q  R  S  I  Q  V  Q  L  Q  H  A  L  L  I  L  M  V  I  A  R  R  P  L  R  K  T  S  T  C  T  L  S  G  F  H  L  L  Y  L  S  *  G  N  G  Y  D  H  R  K  Q  H  Q  Q  S  I  *  I  L  N  F  F  C  N  P  *  L  I  V  N  L  F  E </second_frame>
            <third_frame>   R  G  M  Q  H  P  P  Y  Q  R  N  M  K  S  V  R  P  P  I  I  P  P  E  D  E  Y  E  K  Q  D  E  N  L  F  L  S  L  G  R  L  V  M  N  T  G  S  T  V  V  E  I  F  G  G  M  F  S  G  F  R  K  N  S  Y  P  H  H  V  Q  Q  H  Y  H  Y  N  H  K  Q  S  S  T  W  P  M  Q  E  S  Y  V  I  R  D  E  D  E  A  P  P  L  D  T  R  D  P  T  P  R  K  T  Y  P  I  M  N  K  D  P  E  K  P  R  H  I  R  Q  S  Q  S  H  Y  V  G  W  N  G  N  A  H  G  H  G  N  F  Q  Q  Q  Q  H  Q  H  Q  Q  Q  F  L  P  Q  V  Y  Q  H  H  D  K  H  Q  S  S  S  P  Q  T  Y  Y  E  E  S  C  E  T  K  E  I  V  F  G  A  V  Q  E  Q  D  G  R  H  E  T  M  V  I  K  A  V  D  Y  G  D  P  A  Y  N  N  H  N  V  R  S  R  Y  N  Y  S  T  R  Y  S  F  *  W  *  *  L  D  D  H  C  E  K  H  Q  L  V  L  C  L  D  F  T  C  C  I  F  H  R  E  M  D  M  I  I  E  N  S  T  N  K  V  Y  E  F  *  I  S  F  V  I  H  N  L  *  *  I  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21264" stop="21947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGMQHPPYQRNMKSVRPPIIPPEDEYEKQDENLFLSLGRLVMNTGSTVVEIFGGMFSGFRKNSYPHHVQQHYHYNHKQSSTWPMQESYVIRDEDEAPPLDTRDPTPRKTYPIMNKDPEKPRHIRQSQSHYVGWNGNAHGHGNFQQQQHQHQQQFLPQVYQHHDKHQSSSPQTYYEESCETKEIVFGAVQEQDGRHETMVIKAVDYGDPAYNNHNVRSRYNYSTRYSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27878" PGL_stop="28363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27878" e_stop="28363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="27878" e_stop="28363" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27878" stop="28363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATTCCATATTTATCTGCAAACAACAAAACCCCTAATTTAAAGGGGTTGCGGATTGTGTGATATTTTCTCCTTTCTTGTTGTTGTCGTCAATTTCTTGAAACATGGCGGGTCAAACAAACACAAAAGACTCGGACGTGAATGAAGAATTGCAGGAGCTCGAATTCACGAAAAGGGGTTGTTGTTTTTGGTTTCCATCTTTCACATGTGGAAGAGGCGTTTGGGAACGAGTCTCTACCAGTGATCAAAAGGAAGAAACGCATTGGTGGGATAAGGGGTTAAACGTTGTTATGAAAGTCAGGGAGTGGTCGGAACTTGTGGCAGGTCCAAAATGGAAGACATTTATTAGACGATTCAATAAAAATCGTTCTAAAACTAATAAATTCAATTACGACCCCATGAGTTACTCCTTGAATTTCGATGATGGACCAGGGGTAAACGATCAATCGGAAGACGATCGTTTATTTCGTGATTTCTCGTCGAGA</gDNA_template>
            <first_frame> *  N  S  I  F  I  C  K  Q  Q  N  P  *  F  K  G  V  A  D  C  V  I  F  S  P  F  L  L  L  S  S  I  S  *  N  M  A  G  Q  T  N  T  K  D  S  D  V  N  E  E  L  Q  E  L  E  F  T  K  R  G  C  C  F  W  F  P  S  F  T  C  G  R  G  V  W  E  R  V  S  T  S  D  Q  K  E  E  T  H  W  W  D  K  G  L  N  V  V  M  K  V  R  E  W  S  E  L  V  A  G  P  K  W  K  T  F  I  R  R  F  N  K  N  R  S  K  T  N  K  F  N  Y  D  P  M  S  Y  S  L  N  F  D  D  G  P  G  V  N  D  Q  S  E  D  D  R  L  F  R  D  F  S  S  R </first_frame>
            <second_frame>  K  I  P  Y  L  S  A  N  N  K  T  P  N  L  K  G  L  R  I  V  *  Y  F  L  L  S  C  C  C  R  Q  F  L  E  T  W  R  V  K  Q  T  Q  K  T  R  T  *  M  K  N  C  R  S  S  N  S  R  K  G  V  V  V  F  G  F  H  L  S  H  V  E  E  A  F  G  N  E  S  L  P  V  I  K  R  K  K  R  I  G  G  I  R  G  *  T  L  L  *  K  S  G  S  G  R  N  L  W  Q  V  Q  N  G  R  H  L  L  D  D  S  I  K  I  V  L  K  L  I  N  S  I  T  T  P  *  V  T  P  *  I  S  M  M  D  Q  G  *  T  I  N  R  K  T  I  V  Y  F  V  I  S  R  R   </second_frame>
            <third_frame>   K  F  H  I  Y  L  Q  T  T  K  P  L  I  *  R  G  C  G  L  C  D  I  F  S  F  L  V  V  V  V  N  F  L  K  H  G  G  S  N  K  H  K  R  L  G  R  E  *  R  I  A  G  A  R  I  H  E  K  G  L  L  F  L  V  S  I  F  H  M  W  K  R  R  L  G  T  S  L  Y  Q  *  S  K  G  R  N  A  L  V  G  *  G  V  K  R  C  Y  E  S  Q  G  V  V  G  T  C  G  R  S  K  M  E  D  I  Y  *  T  I  Q  *  K  S  F  *  N  *  *  I  Q  L  R  P  H  E  L  L  L  E  F  R  *  W  T  R  G  K  R  S  I  G  R  R  S  F  I  S  *  F  L  V  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27980" stop="28363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMAGQTNTKDSDVNEELQELEFTKRGCCFWFPSFTCGRGVWERVSTSDQKEETHWWDKGLNVVMKVREWSELVAGPKWKTFIRRFNKNRSKTNKFNYDPMSYSLNFDDGPGVNDQSEDDRLFRDFSSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32939" PGL_stop="32602"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32939" e_stop="32602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="32939" e_stop="32602" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32939" stop="32707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32801" stop="32602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594624" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGGTTGTTGGTCCTAAAGAGCCCTTTGATTGTGCTGTTTGCTTGTGTGAATTCTCTGATAAGGACAAATTGAGATTGCTCCCTACTTGTAGCCATGCTTTCCATATCAACTGCATTGATACTTGGCTCCTCTCTAACTCAACGTGCCCTCTTTGTCGAGCAACTCTTTTCAATCCCGGGTTTCCCATTGAAAATCCAATTTTCGATTACGTTGAACCGAGAGATGATGATGGTTATCATGGTAATGGGGATCACGAGTTCCCCACTTCTCAAAAGACTATGGAACTAGAGGAAGTTGTGGTTGCTAAAGCAACATTTCCTGTGAGACTTGGTAAGT</gDNA_template>
            <first_frame> R  G  C  W  S  *  R  A  L  *  L  C  C  L  L  V  *  I  L  *  *  G  Q  I  E  I  A  P  Y  L  *  P  C  F  P  Y  Q  L  H  *  Y  L  A  P  L  *  L  N  V  P  S  L  S  S  N  S  F  Q  S  R  V  S  H  *  K  S  N  F  R  L  R  *  T  E  R  *  *  W  L  S  W  *  W  G  S  R  V  P  H  F  S  K  D  Y  G  T  R  G  S  C  G  C  *  S  N  I  S  C  E  T  W  *   </first_frame>
            <second_frame>  E  V  V  G  P  K  E  P  F  D  C  A  V  C  L  C  E  F  S  D  K  D  K  L  R  L  L  P  T  C  S  H  A  F  H  I  N  C  I  D  T  W  L  L  S  N  S  T  C  P  L  C  R  A  T  L  F  N  P  G  F  P  I  E  N  P  I  F  D  Y  V  E  P  R  D  D  D  G  Y  H  G  N  G  D  H  E  F  P  T  S  Q  K  T  M  E  L  E  E  V  V  V  A  K  A  T  F  P  V  R  L  G  K  </second_frame>
            <third_frame>   R  L  L  V  L  K  S  P  L  I  V  L  F  A  C  V  N  S  L  I  R  T  N  *  D  C  S  L  L  V  A  M  L  S  I  S  T  A  L  I  L  G  S  S  L  T  Q  R  A  L  F  V  E  Q  L  F  S  I  P  G  F  P  L  K  I  Q  F  S  I  T  L  N  R  E  M  M  M  V  I  M  V  M  G  I  T  S  S  P  L  L  K  R  L  W  N  *  R  K  L  W  L  L  K  Q  H  F  L  *  D  L  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32938" stop="32603"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVGPKEPFDCAVCLCEFSDKDKLRLLPTCSHAFHINCIDTWLLSNSTCPLCRATLFNPGFPIENPIFDYVEPRDDDGYHGNGDHEFPTSQKTMELEEVVVAKATFPVRLGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="33932" PGL_stop="33067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33932" e_stop="33067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="33932" e_stop="33067" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33932" stop="33067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGACTTGTCAGTTGACAGCTTTTGGTTTCCAAATAAGTCAATGTCCTTTTTCAGTTCAAAATCACCCCTCTAACTTCTCTGTTTTATATTTTACACACTATTTTTTTCTATGTTGCTAAAAACTAGAAATTGTTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATATCCTCCTCCTCTGTTTCCCCCATCTCCTCCTCCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACCAAACTCATCTTCTTCATCCCCATCTGGAAACAAGATTAGTCCAGCTGTTCTTTTCATTATAGTTATATTAGCTGTCCTGTTTTTCATATCTGGTCTGCTTCATTTGCTAGTTAGGTTTCTTATCAAACACCCTTCTTCTTCAGCATCATCTC</gDNA_template>
            <first_frame> *  D  L  S  V  D  S  F  W  F  P  N  K  S  M  S  F  F  S  S  K  S  P  L  *  L  L  C  F  I  F  Y  T  L  F  F  S  M  L  L  K  T  R  N  C  L  N  I  E  R  K  I  G  S  K  I  F  K  L  F  F  F  Y  L  C  C  K  R  D  F  K  I  L  *  M  S  *  G  F  A  A  A  R  S  D  S  L  Y  K  G  I  V  I  S  I  V  F  L  C  N  G  D  *  V  G  I  K  T  G  K  D  S  V  F  S  I  F  C  L  V  S  S  L  S  L  V  I  C  S  V  T  K  L  C  F  L  L  K  K  K  Q  K  T  P  T  F  L  E  S  E  G  T  V  I  L  N  V  *  V  F  L  S  F  *  D  G  E  R  *  I  K  K  V  G  F  F  L  M  S  C  *  D  D  L  F  I  W  *  S  *  V  T  K  M  G  F  W  A  Y  P  S  E  K  F  L  D  S  I  *  K  R  W  C  F  Y  I  S  S  S  S  V  S  P  I  S  S  S  I  W  W  K  F  *  F  S  *  G  T  K  L  I  F  F  I  P  I  W  K  Q  D  *  S  S  C  S  F  H  Y  S  Y  I  S  C  P  V  F  H  I  W  S  A  S  F  A  S  *  V  S  Y  Q  T  P  F  F  F  S  I  I   </first_frame>
            <second_frame>  E  T  C  Q  L  T  A  F  G  F  Q  I  S  Q  C  P  F  S  V  Q  N  H  P  S  N  F  S  V  L  Y  F  T  H  Y  F  F  L  C  C  *  K  L  E  I  V  *  T  *  R  E  K  *  A  Q  K  Y  S  N  F  F  F  S  I  Y  V  V  K  G  I  S  R  S  Y  K  C  L  R  V  L  L  Q  P  E  V  I  L  Y  I  K  G  L  L  *  V  L  F  F  C  V  M  V  T  K  W  E  S  R  Q  V  K  I  L  S  L  A  F  S  V  W  F  H  H  Y  L  L  L  F  A  L  S  L  N  C  V  F  F  *  K  K  N  K  R  L  Q  L  F  L  N  L  K  G  Q  *  F  *  M  F  E  F  F  *  A  S  E  M  V  K  G  R  *  K  K  L  V  F  F  *  *  V  V  E  M  I  C  S  F  G  E  V  E  S  Q  R  W  V  S  G  H  T  H  L  K  S  S  W  I  Q  Y  R  K  D  G  V  F  T  Y  P  P  P  L  F  P  P  S  P  P  P  F  G  G  S  S  S  F  H  K  E  P  N  S  S  S  S  S  P  S  G  N  K  I  S  P  A  V  L  F  I  I  V  I  L  A  V  L  F  F  I  S  G  L  L  H  L  L  V  R  F  L  I  K  H  P  S  S  S  A  S  S  </second_frame>
            <third_frame>   R  L  V  S  *  Q  L  L  V  S  K  *  V  N  V  L  F  Q  F  K  I  T  P  L  T  S  L  F  Y  I  L  H  T  I  F  F  Y  V  A  K  N  *  K  L  F  K  H  R  E  K  N  R  L  K  N  I  Q  T  F  F  F  L  F  M  L  *  K  G  F  Q  D  P  I  N  V  L  G  F  C  C  S  Q  K  *  F  F  I  *  R  D  C  Y  K  Y  C  F  S  V  *  W  *  L  S  G  N  Q  D  R  *  R  F  C  L  *  H  F  L  F  G  F  I  T  I  S  C  Y  L  L  C  H  *  I  V  F  S  F  E  K  K  T  K  D  S  N  F  S  *  I  *  R  D  S  D  S  E  C  L  S  F  S  K  L  L  R  W  *  K  V  D  K  K  S  W  F  F  F  N  E  L  L  R  *  F  V  H  L  V  K  L  S  H  K  D  G  F  L  G  I  P  I  *  K  V  L  G  F  N  I  E  K  M  V  F  L  H  I  L  L  L  C  F  P  H  L  L  L  H  L  V  E  V  L  V  F  I  R  N  Q  T  H  L  L  H  P  H  L  E  T  R  L  V  Q  L  F  F  S  L  *  L  Y  *  L  S  C  F  S  Y  L  V  C  F  I  C  *  L  G  F  L  S  N  T  L  L  L  Q  H  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33397" stop="33068"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEMICSFGEVESQRWVSGHTHLKSSWIQYRKDGVFTYPPPLFPPSPPPFGGSSSFHKEPNSSSSSPSGNKISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="36872" PGL_stop="38578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36872" e_stop="37473"/>
            <exon e_start="37551" e_stop="37613"/>
            <exon e_start="37689" e_stop="37805"/>
            <exon e_start="38397" e_stop="38578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.397" e_score="0.992"/>
          <exon-intron don_prob="0.822" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="36872" e_stop="37473" e_length="602"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.397">
            <gDNA_intron_boundary i_start="37474" i_stop="37550" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37551" e_stop="37613" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.822" acc_prob="0.922">
            <gDNA_intron_boundary i_start="37614" i_stop="37688" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37689" e_stop="37805" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="37806" i_stop="38396" i_length="591"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="38397" e_stop="38578" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36872" stop="37473"/>
              <exon start="37551" stop="37613"/>
              <exon start="37689" stop="37805"/>
              <exon start="38397" stop="38578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562993" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCAGGATTTTGTGTTTGACATAATCTATTACATACAAAAATTTCTAATTTGATTGACCACAAGTTCTAAGAGTAGATTTTGAAGATTATTTTTTAAATATATGTTTGATATTTTCAAGTTGTCATGAACTAACTCATACTTTCATTAGTACAAATTATTTAAATACGAAAAATATTCAAGTTGACAACTCTACCCTACCCTGCTTTGGCCGCAGTAGTCAAATTTCTCTTTCTTTTAGGTTTAAGCACGATAGGCAAATAAAAAGGGTCCAACTTGATTAATGAAACCAAAAAAAAAAAAAAACATTATCAAATTTTGTACGGCAATGAAAAAGTTGTTGTCTTTCTTCTGAAGAAAAAAAAGGATTCTTGACTAGGTGTGGGACTGGGAGTGTAAAGAAAGAAAAATGGTGATGCAATGTTGGTCAACTGATTTCTTGCCCTTTTTGGCAATGGTGATGGTGGAATGTTGTGAAATGTTGATGATTACACTTGGTAAAGCAGCCATGAATGATGGATTGAACAATCTTGTTTATGTTGTTTACTATAATGCCCTTGGTACCCTTTTTCTTCTTCCTTGCTTAATCTTCCATAGACACAG : AAGCAATATGGTTCCTATTACTTTGCCTATATTGTGGAGATTCTTCCTTCTTGGCCTGTTGGG : AATTTGTTTGGTGCAAGCTGTGGCCTTTACAGGTATTAAGTACAGCACTCCTACACTGGCAGCTGCTTTAGGGAATTTGATGCCAGGTTTTACATTTTTGCTTGCCATCATTTTCAG : GATGGAGAAGTTAGATATAACAAAGGCCAGCAGTCAAGCAAAATCTGTGGGCACCGTAGTGGCAATTATGGGGGCATCCATCATGACATTATACAAAGGACCAAGGGTACTAGGATCAAATTTACCTTCTGATTCATCCCATCACGAGTTAGTACTTTCACAAGAATCAAACTGGATATTGG</gDNA_template>
            <first_frame> K  Q  D  F  V  F  D  I  I  Y  Y  I  Q  K  F  L  I  *  L  T  T  S  S  K  S  R  F  *  R  L  F  F  K  Y  M  F  D  I  F  K  L  S  *  T  N  S  Y  F  H  *  Y  K  L  F  K  Y  E  K  Y  S  S  *  Q  L  Y  P  T  L  L  W  P  Q  *  S  N  F  S  F  F  *  V  *  A  R  *  A  N  K  K  G  P  T  *  L  M  K  P  K  K  K  K  N  I  I  K  F  C  T  A  M  K  K  L  L  S  F  F  *  R  K  K  R  I  L  D  *  V  W  D  W  E  C  K  E  R  K  M  V  M  Q  C  W  S  T  D  F  L  P  F  L  A  M  V  M  V  E  C  C  E  M  L  M  I  T  L  G  K  A  A  M  N  D  G  L  N  N  L  V  Y  V  V  Y  Y  N  A  L  G  T  L  F  L  L  P  C  L  I  F  H  R  H  R :   S  N  M  V  P  I  T  L  P  I  L  W  R  F  F  L  L  G  L  L  G :   I  C  L  V  Q  A  V  A  F  T  G  I  K  Y  S  T  P  T  L  A  A  A  L  G  N  L  M  P  G  F  T  F  L  L  A  I  I  F  R :   M  E  K  L  D  I  T  K  A  S  S  Q  A  K  S  V  G  T  V  V  A  I  M  G  A  S  I  M  T  L  Y  K  G  P  R  V  L  G  S  N  L  P  S  D  S  S  H  H  E  L  V  L  S  Q  E  S  N  W  I  L  </first_frame>
            <second_frame>  S  R  I  L  C  L  T  *  S  I  T  Y  K  N  F  *  F  D  *  P  Q  V  L  R  V  D  F  E  D  Y  F  L  N  I  C  L  I  F  S  S  C  H  E  L  T  H  T  F  I  S  T  N  Y  L  N  T  K  N  I  Q  V  D  N  S  T  L  P  C  F  G  R  S  S  Q  I  S  L  S  F  R  F  K  H  D  R  Q  I  K  R  V  Q  L  D  *  *  N  Q  K  K  K  K  T  L  S  N  F  V  R  Q  *  K  S  C  C  L  S  S  E  E  K  K  G  F  L  T  R  C  G  T  G  S  V  K  K  E  K  W  *  C  N  V  G  Q  L  I  S  C  P  F  W  Q  W  *  W  W  N  V  V  K  C  *  *  L  H  L  V  K  Q  P  *  M  M  D  *  T  I  L  F  M  L  F  T  I  M  P  L  V  P  F  F  F  F  L  A  *  S  S  I  D  T   : E  A  I  W  F  L  L  L  C  L  Y  C  G  D  S  S  F  L  A  C  W   : E  F  V  W  C  K  L  W  P  L  Q  V  L  S  T  A  L  L  H  W  Q  L  L  *  G  I  *  C  Q  V  L  H  F  C  L  P  S  F  S   : G  W  R  S  *  I  *  Q  R  P  A  V  K  Q  N  L  W  A  P  *  W  Q  L  W  G  H  P  S  *  H  Y  T  K  D  Q  G  Y  *  D  Q  I  Y  L  L  I  H  P  I  T  S  *  Y  F  H  K  N  Q  T  G  Y  W </second_frame>
            <third_frame>   A  G  F  C  V  *  H  N  L  L  H  T  K  I  S  N  L  I  D  H  K  F  *  E  *  I  L  K  I  I  F  *  I  Y  V  *  Y  F  Q  V  V  M  N  *  L  I  L  S  L  V  Q  I  I  *  I  R  K  I  F  K  L  T  T  L  P  Y  P  A  L  A  A  V  V  K  F  L  F  L  L  G  L  S  T  I  G  K  *  K  G  S  N  L  I  N  E  T  K  K  K  K  K  H  Y  Q  I  L  Y  G  N  E  K  V  V  V  F  L  L  K  K  K  K  D  S  *  L  G  V  G  L  G  V  *  R  K  K  N  G  D  A  M  L  V  N  *  F  L  A  L  F  G  N  G  D  G  G  M  L  *  N  V  D  D  Y  T  W  *  S  S  H  E  *  W  I  E  Q  S  C  L  C  C  L  L  *  C  P  W  Y  P  F  S  S  S  L  L  N  L  P  *  T  Q  :  K  Q  Y  G  S  Y  Y  F  A  Y  I  V  E  I  L  P  S  W  P  V  G  :  N  L  F  G  A  S  C  G  L  Y  R  Y  *  V  Q  H  S  Y  T  G  S  C  F  R  E  F  D  A  R  F  Y  I  F  A  C  H  H  F  Q  :  D  G  E  V  R  Y  N  K  G  Q  Q  S  S  K  I  C  G  H  R  S  G  N  Y  G  G  I  H  H  D  I  I  Q  R  T  K  G  T  R  I  K  F  T  F  *  F  I  P  S  R  V  S  T  F  T  R  I  K  L  D  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37250" stop="37473"/>
                    <exon start="37551" stop="37613"/>
                    <exon start="37689" stop="37805"/>
                    <exon start="38397" stop="38577"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWDWECKERKMVMQCWSTDFLPFLAMVMVECCEMLMITLGKAAMNDGLNNLVYVVYYNALGTLFLLPCLIFHRHRSNMVPITLPILWRFFLLGLLGICLVQAVAFTGIKYSTPTLAAALGNLMPGFTFLLAIIFRMEKLDITKASSQAKSVGTVVAIMGASIMTLYKGPRVLGSNLPSDSSHHELVLSQESNWIL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36930" stop="37154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQVLRVDFEDYFLNICLIFSSCHELTHTFISTNYLNTKNIQVDNSTLPCFGRSSQISLSFRFKHDRQIKRVQLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="41914" PGL_stop="45584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41914" e_stop="42366"/>
            <exon e_start="42463" e_stop="42528"/>
            <exon e_start="43397" e_stop="43510"/>
            <exon e_start="44124" e_stop="44361"/>
            <exon e_start="44554" e_stop="44712"/>
            <exon e_start="44818" e_stop="44969"/>
            <exon e_start="45052" e_stop="45584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.704" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41914" e_stop="42366" e_length="453"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.704">
            <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42463" e_stop="42528" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43397" e_stop="43510" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44124" e_stop="44361" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.847">
            <gDNA_intron_boundary i_start="44362" i_stop="44553" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44554" e_stop="44712" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.756">
            <gDNA_intron_boundary i_start="44713" i_stop="44817" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44818" e_stop="44969" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="44970" i_stop="45051" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="45052" e_stop="45584" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41914" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44361"/>
              <exon start="44554" stop="44712"/>
              <exon start="44818" stop="44969"/>
              <exon start="45052" stop="45584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG : ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG : GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG : GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG : ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT : GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG : CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTG</gDNA_template>
            <first_frame> P  *  E  *  K  K  S  V  K  N  F  I  F  N  F  P  Y  K  T  *  L  K  K  Q  L  L  Q  F  Q  C  K  L  S  *  K  K  N  S  Y  F  N  P  G  P  *  H  I  V  F  I  E  H  T  H  S  Y  E  *  I  S  D  F  *  V  K  L  M  S  A  T  R  R  S  *  R  F  *  R  K  K  Q  R  K  N  G  K  Q  *  Q  R  D  N  F  L  Q  R  S  A  T  I  C  S  Y  G  D  Y  G  M  Y  K  C  W  I  K  Y  A  L  Q  S  C  Y  *  Q  R  H  E  *  S  C  L  C  C  L  *  L  W  S  C  G  S  S  A  S  S  F  S  F  L  L  H  Q  :  I  K  N  S  S  T  S  Q  L  L  D  S  C  Q  N  L  S  S  W  S  Y  R  :  V  Y  I  T  D  N  G  V  Y  R  H  Y  L  C  L  S  N  A  C  L  R  H  Q  Q  S  R  P  C  F  Y  F  R  L  G  C  H  F  Q  :  D  G  E  D  T  V  E  K  I  N  H  S  S  Q  S  V  G  H  G  G  V  H  S  W  S  I  R  S  N  S  V  Q  R  P  K  N  I  S  A  Y  H  S  H  T  Q  F  T  T  S  T  S  Q  L  I  S  I  E  L  D  A  W  W  P  F  P  H  N  *  I  F  F  S  P  N  V  V  Y  S  S   : D  M  D  Y  E  G  V  S  S  R  S  D  G  S  F  L  L  Q  L  N  C  *  H  P  S  C  Y  C  R  I  F  I  *  T  *  L  K  Q  M  D  N  *  T  G  Y  R  T  G  L  H  P  L  L   : W  N  I  G  F  I  L  K  *  Y  N  S  H  L  G  F  A  R  E  R  T  S  I  C  S  N  V  *  T  I  V  H  R  D  C  S  C  H  G  S  H  S  L  R  R  Y  S  L  F  G  K  :  H  R  W  S  N  G  N  C  N  W  I  L  Y  G  N  V  G  K  G  K  R  D  V  *  I  *  *  F  *  *  S  R  V  V  S  R  S  K  V  P  L  V  T  Q  L  Q  K  *  R  H  L  K  Q  V  N  H  *  F  E  S  R  M  G  R  H  T  K  G  R  K  N  Y  T  I  F  Y  E  P  K  T  S  M  G  L  Y  R  K  K  Q  Y  A  V  M  G  K  K  G  V  A  K  L  L  A  Y  I  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y   </first_frame>
            <second_frame>  L  R  N  K  K  K  V  *  K  I  S  S  L  I  F  P  I  K  L  S  *  K  N  S  C  F  N  F  N  V  S  L  A  E  K  K  T  V  T  L  I  L  D  H  N  I  S  Y  L  L  N  T  H  T  R  M  N  K  Y  Q  I  F  R  *  S  S  C  P  P  R  V  E  V  E  D  F  E  E  K  N  R  G  K  M  G  S  N  N  R  E  T  T  F  Y  K  E  V  L  P  F  A  A  M  V  T  M  E  C  I  N  V  G  L  N  T  L  Y  K  A  A  T  N  K  G  M  S  N  H  V  F  V  V  Y  S  Y  G  L  A  A  L  L  L  L  P  S  P  F  F  S  T  R :   S  R  I  L  P  P  L  N  C  S  I  L  A  K  I  F  L  L  G  V  I  G :   C  T  S  Q  I  M  G  Y  T  G  I  I  Y  A  S  P  T  L  A  S  A  I  S  N  L  V  P  A  F  T  F  V  L  A  V  I  F  R :   M  E  K  I  Q  L  K  R  S  T  T  R  A  K  V  L  G  T  V  V  S  I  A  G  A  F  V  V  T  L  Y  K  G  P  K  I  L  V  P  T  T  A  T  P  N  L  L  R  Q  P  L  S  S  S  Q  S  N  W  M  L  G  G  L  F  L  T  T  E  Y  F  L  V  P  M  W  Y  I  V  Q  :  T  W  I  M  K  V  Y  P  A  E  V  T  V  V  F  F  Y  N  L  T  V  S  I  L  A  A  I  V  G  F  L  S  E  P  D  S  N  K  W  I  I  K  P  D  I  A  L  A  S  I  L  C  S  :  G  I  L  G  S  S  L  N  N  T  I  H  T  W  A  L  R  V  K  G  P  V  Y  V  A  M  F  K  P  L  S  I  A  I  A  V  A  M  G  V  I  L  L  G  D  T  L  Y  L  G  S :   I  V  G  A  T  V  I  A  I  G  F  Y  T  V  M  W  G  K  A  K  E  M  S  E  Y  N  D  S  S  D  L  E  S  S  P  D  Q  K  F  P  L  L  H  N  Y  K  N  E  G  I  S  N  K  *  T  I  S  L  K  A  E  W  D  V  T  Q  K  A  G  K  I  T  P  S  F  M  N  Q  K  R  V  W  G  C  T  G  R  N  N  M  P  L  W  E  K  K  E  *  Q  N  C  W  H  I  Y  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  </second_frame>
            <third_frame>   L  G  I  K  K  K  C  K  K  F  H  L  *  F  S  L  *  N  L  A  K  K  T  V  A  S  I  S  M  *  A  *  L  K  K  K  Q  L  L  *  S  W  T  I  T  Y  R  I  Y  *  T  H  T  L  V  *  I  N  I  R  F  L  G  K  A  H  V  R  H  A  *  K  L  K  I  L  K  K  K  T  E  E  K  W  E  A  I  T  E  R  Q  L  F  T  K  K  C  Y  H  L  Q  L  W  *  L  W  N  V  *  M  L  D  *  I  R  F  T  K  L  L  L  T  K  A  *  V  I  M  S  L  L  F  I  V  M  V  L  R  L  F  C  F  F  L  L  L  S  S  P  P   : D  Q  E  F  F  H  L  S  I  A  R  F  L  P  K  S  F  F  L  E  L  S   : G  V  H  H  R  *  W  G  I  Q  A  L  S  M  P  L  Q  R  L  P  P  P  S  A  I  S  S  L  L  L  L  S  S  W  L  S  F  S   : G  W  R  R  Y  S  *  K  D  Q  P  L  E  P  K  C  W  A  R  W  C  P  *  L  E  H  S  *  *  L  C  T  K  A  Q  K  Y  *  C  L  P  Q  P  H  P  I  Y  Y  V  N  L  S  A  H  L  N  R  I  G  C  L  V  A  F  S  S  Q  L  N  I  F  *  S  Q  C  G  I  *  F  R :   H  G  L  *  R  C  I  Q  Q  K  *  R  *  F  S  S  T  T  *  L  L  A  S  *  L  L  L  *  D  F  Y  L  N  L  T  Q  T  N  G  *  L  N  R  I  S  H  W  P  P  S  S  A  L :   E  Y  W  V  H  P  *  I  I  Q  F  T  P  G  L  C  A  *  K  D  Q  Y  M  *  Q  C  L  N  H  C  P  S  R  L  Q  L  P  W  E  S  F  S  *  E  I  L  F  I  W  E   : A  S  L  E  Q  R  *  L  Q  L  D  S  I  R  *  C  G  E  R  Q  K  R  C  L  N  I  M  I  L  V  I  S  S  R  L  Q  I  K  S  S  P  C  Y  T  T  T  K  M  K  A  S  Q  T  S  E  P  L  V  *  K  Q  N  G  T  S  H  K  R  Q  E  K  L  H  H  L  L  *  T  K  N  E  Y  G  V  V  Q  E  E  T  I  C  R  Y  G  K  K  R  S  S  K  I  V  G  I  Y  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42107" stop="42366"/>
                    <exon start="42463" stop="42528"/>
                    <exon start="43397" stop="43510"/>
                    <exon start="44124" stop="44361"/>
                    <exon start="44554" stop="44712"/>
                    <exon start="44818" stop="44969"/>
                    <exon start="45052" stop="45214"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSCPPRVEVEDFEEKNRGKMGSNNRETTFYKEVLPFAAMVTMECINVGLNTLYKAATNKGMSNHVFVVYSYGLAALLLLPSPFFSTRSRILPPLNCSILAKIFLLGVIGCTSQIMGYTGIIYASPTLASAISNLVPAFTFVLAVIFRMEKIQLKRSTTRAKVLGTVVSIAGAFVVTLYKGPKILVPTTATPNLLRQPLSSSQSNWMLGGLFLTTEYFLVPMWYIVQTWIMKVYPAEVTVVFFYNLTVSILAAIVGFLSEPDSNKWIIKPDIALASILCSGILGSSLNNTIHTWALRVKGPVYVAMFKPLSIAIAVAMGVILLGDTLYLGSIVGATVIAIGFYTVMWGKAKEMSEYNDSSDLESSPDQKFPLLHNYKNEGISNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45282" stop="45584"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNEYGVVQEETICRYGKKRSSKIVGIYIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="51435" PGL_stop="55280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51435" e_stop="51669"/>
            <exon e_start="51813" e_stop="52076"/>
            <exon e_start="52671" e_stop="52820"/>
            <exon e_start="53079" e_stop="53212"/>
            <exon e_start="53322" e_stop="53535"/>
            <exon e_start="53698" e_stop="53843"/>
            <exon e_start="53930" e_stop="54154"/>
            <exon e_start="54243" e_stop="54445"/>
            <exon e_start="54588" e_stop="54831"/>
            <exon e_start="54912" e_stop="55280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.012" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51435" e_stop="51669" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.012">
            <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51813" e_stop="52076" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="52671" e_stop="52820" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53079" e_stop="53212" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53322" e_stop="53535" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53698" e_stop="53843" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53844" i_stop="53929" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53930" e_stop="54154" e_length="225"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54243" e_stop="54445" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54588" e_stop="54831" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="0.959">
            <gDNA_exon_boundary e_start="54912" e_stop="55280" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51435" stop="51669"/>
              <exon start="51813" stop="52076"/>
              <exon start="52671" stop="52820"/>
              <exon start="53079" stop="53212"/>
              <exon start="53322" stop="53535"/>
              <exon start="53698" stop="53843"/>
              <exon start="53930" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53202" stop="53212"/>
              <exon start="53322" stop="53429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54444" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596177" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTGCATTTCTTCTGCTTATGTTACTTTAAAAAATAAGTTATATATAGAGAGAGAGGACGTTACCTTCCTGTACACTCCAAAAATCATATTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG : ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG : TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG : GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG : AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG : GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA : AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATTA</gDNA_template>
            <first_frame> *  C  I  S  S  A  Y  V  T  L  K  N  K  L  Y  I  E  R  E  D  V  T  F  L  Y  T  P  K  I  I  L  Q  V  I  L  I  S  R  I  N  N  V  F  C  Y  A  Q  E  S  L  A  I  L  S  P  *  I  H  P  Q  R  F  P  *  D  L  *  Q  N  D  S  H  R  *  I  I  F  F   : D  C  S  F  Y  *  *  T  *  L  L  A  P  A  T  G  I  L  R  V  T  L  S  W  S  T  A  E  S  S  P  A  I  *  F  D  Q  R  R  *  N  T  Y  R  S  S  I  K  S  G  R  L  P  L  Q  N  C  *  W  K  I  Q  *  P  F  *  *  R  N  R  Q  S  I  F  F  L  W  Q  E  Y  D  A  S  S  S  E  *  *   : V  K  K  A  R  S  N  G  S  S  N  E  A  S  S  T  K  K  I  H  R  H  W  K  T  I  Q  Y  D  S  C  F  L  D  T  V  Y  G  S  *  L  D  R  S  F  G  R  Y  S  T   : G  *  A  K  G  T  K  R  S  C  *  *  M  P  T  Q  V  L  *  V  *  Q  I  Q  R  N  S  Y  R  F  L  *  N  Q  N  R  S  L  E  Q  P  Y  S  L  V  :  G  R  K  C  N  L  W  K  *  R  G  C  F  E  E  S  E  N  I  *  R  R  K  T  E  I  R  *  K  W  T  H  P  T  R  *  K  W  K  N  Y  L  W  *  C  S  *  H  L  G  W  T  F  N  A  S  S  S  L  C  S  R  A  Q  C  C  L  *  H  F  E   : E  R  I  S  R  I  R  G  *  R  V  V  S  S  C  K  A  S  H  F  S  C  N  C  K  S  S  H  H  R  L  D  C  S  A  S  E  N  R  Y  Y  A  C  R  N  A  C  Q  L  :  V  W  I  T  R  K  E  V  Q  G  Y  I  W  S  C  W  F  H  F  K  W  C  C  W  N  E  E  T  *  E  S  W  S  A  L  F  L  N  *  R  I  Y  E  C  L  *  N  A  S  T  V  T  *  Y  T  S  A  K  K  Y  R  C  H  A  W  A  K  Q  I  S  S  F  N  *  *  :  N  S  H  G  R  S  S  W  E  *  R  K  R  E  F  I  K  N  W  V  Y  *  A  N  G  F  N  G  A  S  S  *  W  S  S  *  A  L  E  L  S  S  V  D  E  R  S  Y  C  P  R  C  *  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  G  *  R  K  K  C  S  *  V  Q  *  L  *  K  R  N  A  S  N  S  Y  F  E  M  G  R  F  D  R  *  *  R  S  N  Q  N  T  W  *  S  I  *  *  *  Y  R  R  V  G  F  I  S  G  T  H  G  G  E  K  N  *  R  I  C  H  F  R  N  S  L  Q  H  I  P  S  H  G  Y  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  *  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  K  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  *  S  Y  S  T  L  F  S  C  S  S  V  V  D  L  K  I  M  C  V  T  I  Y  *  Y  R  N  T  Y  K  F  V  F  K  V  S  C  S  I  S  S  K  *  Y  I  V  S  W  S  V  K  I  T  I  S  *  *  F  V  L </first_frame>
            <second_frame>  S  A  F  L  L  L  M  L  L  *  K  I  S  Y  I  *  R  E  R  T  L  P  S  C  T  L  Q  K  S  Y  Y  K  *  Y  *  F  L  V  *  T  M  S  F  V  M  L  K  N  L  L  L  S  S  L  R  K  F  I  H  K  D  F  H  E  I  F  D  K  M  T  L  I  D  K  L  F  F  L  :  I  V  H  F  I  D  K  H  N  F  W  H  R  L  P  V  F  F  G  L  L  Y  L  G  A  R  R  S  L  H  Q  Q  Y  N  L  I  N  V  G  R  T  P  T  G  V  R  S  N  P  A  D  Y  P  Y  R  T  A  D  G  K  F  N  D  P  F  N  E  G  T  G  S  Q  F  S  F  F  G  R  N  M  M  P  L  H  Q  N  N  K  :  L  K  K  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  V  H  D  W  I  D  H  L  E  D  T  Q  Q  :  V  E  L  R  A  P  K  E  V  A  N  E  C  P  L  K  S  F  R  F  N  K  S  K  E  T  P  T  D  F  Y  E  I  K  T  G  H  L  N  S  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  E  D  V  L  K  K  V  R  T  F  R  D  G  K  L  K  L  G  E  N  G  L  I  Q  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  L  L  T  L  Q  A  L  F  V  Q  E  H  N  A  V  C  D  T  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  Q  L  L  K  T  D  T  M  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  S  I  L  S  G  V  V  G  M  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  Q  L  R  N  I  D  A  T  P  G  P  N  K  S  L  P  L  T  N  E :   I  P  M  E  E  V  V  G  S  K  G  K  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  V  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  P  R  Y  N  D  F  R  R  G  M  L  Q  I  P  I  S  K  W  E  D  L  T  D  D  E  E  A  I  K  T  L  G  E  V  Y  D  D  D  I  E  E  L  D  L  L  V  G  L  M  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  N  I  F  L  L  M  A  I  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  D  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  I  P  L  Y  F  R  V  P  Q  *  *  T  S  K  S  C  V  *  L  F  I  N  T  V  I  R  T  S  L  Y  L  R  C  L  V  L  F  H  Q  N  N  I  L  Y  L  G  L  *  K  *  L  L  V  S  N  S  Y   </second_frame>
            <third_frame>   V  H  F  F  C  L  C  Y  F  K  K  *  V  I  Y  R  E  R  G  R  Y  L  P  V  H  S  K  N  H  I  T  S  D  I  N  F  S  Y  K  Q  C  L  L  L  C  S  R  I  S  C  Y  P  L  S  V  N  S  S  T  K  I  S  M  R  S  L  T  K  *  L  S  S  I  N  Y  F  F  * :   L  F  I  L  L  I  N  I  T  F  G  T  G  Y  R  Y  S  S  G  Y  F  I  L  E  H  G  G  V  F  T  S  N  I  I  *  S  T  S  V  E  H  L  P  E  F  D  Q  I  R  Q  I  T  L  T  E  L  L  M  E  N  S  M  T  L  L  M  K  E  Q  A  V  N  F  L  S  L  A  G  I  *  C  L  F  I  R  I  I  S :   *  K  S  Q  I  Q  W  *  *  Q  R  S  F  *  H  E  E  N  S  *  T  L  E  N  N  S  I  *  *  L  L  L  G  Y  S  L  W  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  Q  K  K  L  L  M  N  A  H  S  S  P  L  G  L  T  N  P  K  K  L  L  Q  I  F  M  K  S  K  P  V  T  *  T  A  V  L  P  G   : G  T  E  V  *  F  M  E  V  T  R  M  F  *  R  K  *  E  H  L  E  T  E  N  *  N  *  V  K  M  D  S  S  N  K  M  K  M  E  K  L  S  L  V  M  F  V  T  L  G  L  D  F  *  R  F  K  L  S  L  F  K  S  T  M  L  F  V  T  L  *  R :   K  N  I  Q  N  *  R  M  K  S  C  I  V  M  Q  G  *  S  L  Q  L  *  L  Q  K  F  T  P  *  I  G  L  F  S  F  *  K  P  I  L  C  L  Q  E  C  V  P  I   : G  M  D  Y  *  E  R  S  S  R  I  H  L  V  M  L  V  P  F  *  V  V  L  L  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  K  N  L  R  V  F  I  E  C  I  N  C  Y  L  I  H  F  S  *  E  I  *  M  P  R  L  G  Q  T  N  L  F  L  *  L  M   : K  F  P  W  K  K  *  L  G  V  K  E  K  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  G  I  K  L  V  E  L  L  S  F  G  I  I  Q  C  G  *  E  I  L  L  P  K  M  L  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  G  I  E  K  E  V  F  L  G  T  M  T  L  E  E  E  C  F  K  F  L  F  R  N  G  K  I  *  Q  M  M  K  K  Q  S  K  H  L  V  K  Y  M  M  M  I  *  K  S  W  I  Y  *  W  D  S  W  R  R  K  K  L  K  D  L  P  F  Q  K  Q  P  S  T  Y  S  F  S  W  L  *   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  M  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  I  I  L  F  H  S  I  F  V  F  L  S  S  R  P  Q  N  H  V  C  N  Y  L  L  I  P  *  Y  V  Q  V  C  I  *  G  V  L  F  Y  F  I  K  I  I  Y  C  I  L  V  C  E  N  N  Y  *  L  V  I  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51553" stop="51669"/>
                    <exon start="51813" stop="52076"/>
                    <exon start="52671" stop="52820"/>
                    <exon start="53079" stop="53212"/>
                    <exon start="53322" stop="53535"/>
                    <exon start="53698" stop="53843"/>
                    <exon start="53930" stop="54154"/>
                    <exon start="54243" stop="54445"/>
                    <exon start="54588" stop="54831"/>
                    <exon start="54912" stop="55137"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSFVMLKNLLLSSLRKFIHKDFHEIFDKMTLIDKLFFLIVHFIDKHNFWHRLPVFFGLLYLGARRSLHQQYNLINVGRTPTGVRSNPADYPYRTADGKFNDPFNEGTGSQFSFFGRNMMPLHQNNKLKKPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMVHDWIDHLEDTQQVELRAPKEVANECPLKSFRFNKSKETPTDFYEIKTGHLNSRTPWWDGSVIYGSNEDVLKKVRTFRDGKLKLGENGLIQQDENGKIISGDVRNTWAGLLTLQALFVQEHNAVCDTLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVQLLKTDTMLAGMRANWYGLLGKKFKDTFGHVGSILSGVVGMKKPENHGVPYSLTEEFTSVYRMHQLLPDTLQLRNIDATPGPNKSLPLTNEIPMEEVVGSKGKENLSRIGFTKQMVSMGHQASGALELWNYPVWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVPRYNDFRRGMLQIPISKWEDLTDDEEAIKTLGEVYDDDIEELDLLVGLMAEKKIKGFAISETAFNIFLLMAIRRLEADRFFTSNYNDETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPIPLYFRVPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="64009" PGL_stop="66904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64009" e_stop="64109"/>
            <exon e_start="64247" e_stop="64510"/>
            <exon e_start="64603" e_stop="64752"/>
            <exon e_start="64820" e_stop="64956"/>
            <exon e_start="65047" e_stop="65260"/>
            <exon e_start="65326" e_stop="65471"/>
            <exon e_start="65551" e_stop="65778"/>
            <exon e_start="65854" e_stop="66056"/>
            <exon e_start="66127" e_stop="66370"/>
            <exon e_start="66449" e_stop="66904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64009" e_stop="64109" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.935">
            <gDNA_intron_boundary i_start="64110" i_stop="64246" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64247" e_stop="64510" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64511" i_stop="64602" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64603" e_stop="64752" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64753" i_stop="64819" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64820" e_stop="64956" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.884" acc_prob="0.906">
            <gDNA_intron_boundary i_start="64957" i_stop="65046" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65047" e_stop="65260" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65326" e_stop="65471" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65551" e_stop="65778" e_length="228"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65854" e_stop="66056" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="66057" i_stop="66126" i_length="70"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66127" e_stop="66370" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="66449" e_stop="66904" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64009" stop="64109"/>
              <exon start="64247" stop="64510"/>
              <exon start="64603" stop="64752"/>
              <exon start="64820" stop="64956"/>
              <exon start="65047" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="66056"/>
              <exon start="66127" stop="66370"/>
              <exon start="66449" stop="66904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG : ATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG : GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG : AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG : GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA : AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA : TTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</gDNA_template>
            <first_frame> C  *  R  I  S  C  S  P  L  F  V  V  S  S  T  K  I  F  I  R  Y  L  T  K  *  I  S  A  T  N  F  H  F  * :   *  F  I  S  L  I  N  I  T  C  G  T  G  Y  R  C  F  *  G  *  F  I  L  H  F  V  D  I  L  I  R  N  I  I  *  S  T  W  V  E  H  R  A  E  S  D  R  I  R  A  T  S  L  I  E  Q  Q  M  E  N  I  M  I  L  S  M  K  E  Q  E  V  N  F  L  S  L  G  G  I  *  C  L  L  S  N  M  T  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  S  C  *  H  G  E  N  S  *  T  L  E  N  N  L  T  *  *  L  H  H  G  Y  S  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  R  S  L  G  H  L  K  K  L  Q  V  N  V  L  S  S  P  L  S  F  T  N  Q  K  K  L  L  P  D  F  T  K  L  K  P  V  I  *  I  G  V  P  L  G   : G  M  E  V  L  F  M  G  A  T  *  R  S  *  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  D  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  I  L  G  L  D  L  *  H  C  K  R  S  L  Y  K  S  I  I  L  F  V  M  S  *  R :   K  N  I  Q  N  W  K  M  K  S  C  I  V  M  Q  D  W  *  L  L  L  L  L  Q  K  F  T  Q  *  I  G  L  S  S  F  L  K  Q  T  P  Y  L  Q  Q  C  E  P  I   : G  M  D  C  *  G  R  N  L  K  I  H  L  G  T  L  E  V  Q  F  W  V  V  *  *  D  *  K  N  P  K  I  M  E  C  L  I  P  *  L  K  N  L  *  V  C  I  E  C  I  N  S  Y  L  I  N  F  S  *  E  I  *  M  Q  L  L  D  Q  I  N  L  S  L  *  L  T   : K  S  Q  W  E  I  *  S  E  A  K  E  R  R  I  Y  Q  E  S  D  L  L  S  R  W  F  Q  W  G  I  K  H  V  E  L  L  S  F  G  I  I  Q  Y  G  *  G  I  L  L  L  K  M  L  M  E  Q  T  G  H  I  M  L  T  L  Q  H  S  K  :  F  I  E  T  E  K  E  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  R  M  I  W  K  L  L  K  H  F  M  K  F  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  K  D  L  P  S  L  R  L  H  F  S  Y  S  F  S  W  H  Q   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  R  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  T  I  L  F  H  S  T  F  V  F  L  N  I  K  L  I  I  P  N  L  F  T  Y  R  K  *  N  M  K  N  C  V  V  Y  F  R  F  Y  V  I  V  S  V  C  *  I  N  D  V  Y  L  S  I  F  I  *  C  F  L  I  R  *  L  *  S  L  Y  F  M  Y  N  V  L  V  L  L  F  L  F  N  V  K  K  L  F  F  L  Y  Q  </first_frame>
            <second_frame>  A  E  E  S  L  V  L  P  S  S  W  F  H  P  Q  R  F  S  S  D  T  *  Q  N  E  S  P  R  Q  T  F  I  S   : D  S  S  Y  H  *  *  T  *  L  V  A  P  G  T  G  V  F  R  A  S  L  S  C  T  S  S  T  S  *  S  G  I  *  F  D  Q  R  G  *  N  T  E  R  S  P  I  E  S  G  R  L  P  L  *  N  S  R  W  K  I  *  *  S  F  Q  *  R  S  R  K  *  I  F  F  L  W  E  E  Y  D  A  C  *  A  T  *  Q   : V  K  E  S  R  S  N  G  S  G  N  K  A  A  S  T  E  R  I  H  R  H  W  K  T  I  *  H  D  S  C  I  M  D  T  V  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  G  A  *  G  T  *  R  S  C  K  S  M  S  S  Q  V  L  *  V  L  Q  I  K  R  N  S  Y  R  I  L  R  N  *  N  R  S  F  E  *  A  Y  P  L  V  :  G  W  K  C  Y  L  W  E  Q  R  R  D  L  E  E  S  K  D  I  *  R  R  K  I  E  T  I  R  K  W  T  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  Y  L  G  W  I  C  N  T  A  S  A  L  C  T  R  A  *  S  C  L  *  C  L  E   : E  R  I  S  R  I  G  R  *  R  V  V  S  S  C  K  T  G  D  F  C  C  Y  C  K  S  S  H  N  R  L  D  C  R  A  S  *  N  R  H  L  I  C  S  N  A  N  Q  L  :  V  W  I  A  R  E  E  I  *  R  Y  I  W  A  R  W  R  C  N  F  G  W  F  S  R  T  K  K  T  R  K  S  W  S  A  L  F  L  N  *  R  I  C  E  C  V  S  N  A  S  T  L  T  *  *  T  S  V  K  K  Y  R  C  N  F  W  T  K  *  I  Y  P  F  D  *  R  :  N  P  N  G  R  F  N  R  R  Q  R  R  G  E  F  I  K  N  R  I  Y  *  A  D  G  F  N  G  A  S  S  M  W  S  S  *  A  L  E  L  S  N  M  D  E  G  S  Y  C  S  R  C  *  W  N  R  Q  A  T  S  C  *  P  C  S  T  R  N :   L  *  R  Q  R  K  K  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  D  G  *  Y  G  S  Y  *  N  T  S  *  S  L  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  R  I  C  H  L  *  D  C  I  F  H  I  P  S  H  G  I  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  G  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  E  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  Q  S  C  S  T  L  L  S  C  S  *  T  L  N  *  *  Y  L  I  Y  L  L  I  E  N  E  I  *  R  I  V  W  Y  I  S  V  F  T  *  L  F  Q  F  V  K  L  M  M  C  I  Y  L  S  L  F  N  V  S  *  *  D  N  C  N  L  Y  I  L  C  I  M  F  L  C  Y  S  S  Y  L  T  S  K  N  F  F  F  Y  I  K </second_frame>
            <third_frame>   L  K  N  L  L  F  S  P  L  R  G  F  I  H  K  D  F  H  Q  I  L  D  K  M  N  L  R  D  K  L  S  F  L  :  I  V  H  I  I  D  K  H  N  L  W  H  R  V  P  V  F  L  G  L  V  Y  L  A  L  R  R  H  L  N  Q  E  Y  N  L  I  N  V  G  R  T  P  S  G  V  R  S  N  P  G  D  F  P  Y  R  T  A  D  G  K  Y  N  D  P  F  N  E  G  A  G  S  E  F  S  F  F  G  R  N  M  M  P  V  E  Q  H  D  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  E  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  E  L  R  A  P  E  E  V  A  S  Q  C  P  L  K  S  F  K  F  Y  K  S  K  E  T  P  T  G  F  Y  E  I  K  T  G  H  L  N  R  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  V  E  I  L  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  F  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  V  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  E  L  L  K  T  D  T  L  F  A  A  M  R  T  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  A  I  L  G  G  L  V  G  L  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  V  S  V  Y  R  M  H  Q  L  L  P  D  K  L  Q  L  R  N  I  D  A  T  S  G  P  N  K  S  I  P  L  T  N  E :   I  P  M  G  D  L  I  G  G  K  G  E  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  C  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  H  H  V  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  T  D  D  M  E  V  I  K  T  L  H  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  L  M  A  S  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  V  P  L  Y  F  R  V  P  K  H  *  T  N  N  T  *  F  I  Y  L  S  K  M  K  Y  E  E  L  C  G  I  F  P  F  L  R  N  C  F  S  L  L  N  *  *  C  V  S  I  Y  L  Y  L  M  F  L  D  K  I  I  V  I  F  I  F  Y  V  *  C  S  C  V  T  L  L  I  *  R  Q  K  T  F  F  F  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64011" stop="64109"/>
                    <exon start="64247" stop="64510"/>
                    <exon start="64603" stop="64752"/>
                    <exon start="64820" stop="64956"/>
                    <exon start="65047" stop="65260"/>
                    <exon start="65326" stop="65471"/>
                    <exon start="65551" stop="65778"/>
                    <exon start="65854" stop="66056"/>
                    <exon start="66127" stop="66370"/>
                    <exon start="66449" stop="66677"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1911</number_coding_nucleotides>
                  <number_encoded_amino_acids>637</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNLLFSPLRGFIHKDFHQILDKMNLRDKLSFLIVHIIDKHNLWHRVPVFLGLVYLALRRHLNQEYNLINVGRTPSGVRSNPGDFPYRTADGKYNDPFNEGAGSEFSFFGRNMMPVEQHDKLKNPDPMVVATKLLARREFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIEELRAPEEVASQCPLKSFKFYKSKETPTGFYEIKTGHLNRRTPWWDGSVIYGSNVEILKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNTWAGFVTLQALFVQEHNLVCDVLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLFAAMRTNWYGLLGKKFKDTFGHVGGAILGGLVGLKKPENHGVPYSLTEEFVSVYRMHQLLPDKLQLRNIDATSGPNKSIPLTNEIPMGDLIGGKGEENLSRIGFTKQMVSMGHQACGALELWNYPIWMRDLIAQDVDGTDRPHHVDLAALEIYRDRERSVARYNEFRRRMLQIPITKWEDLTDDMEVIKTLHEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPVPLYFRVPKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="70777" PGL_stop="76490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70777" e_stop="70933"/>
            <exon e_start="71706" e_stop="71951"/>
            <exon e_start="74207" e_stop="74356"/>
            <exon e_start="74457" e_stop="74590"/>
            <exon e_start="74656" e_stop="74869"/>
            <exon e_start="74950" e_stop="75095"/>
            <exon e_start="75187" e_stop="75695"/>
            <exon e_start="75784" e_stop="76027"/>
            <exon e_start="76131" e_stop="76490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.969" acc_prob="0.995" e_score="0.992"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70777" e_stop="70933" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.962">
            <gDNA_intron_boundary i_start="70934" i_stop="71705" i_length="772"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71706" e_stop="71951" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71952" i_stop="74206" i_length="2255"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74207" e_stop="74356" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74457" e_stop="74590" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.923">
            <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74656" e_stop="74869" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74870" i_stop="74949" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74950" e_stop="75095" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75096" i_stop="75186" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="75187" e_stop="75695" e_length="509"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75696" i_stop="75783" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="75784" e_stop="76027" e_length="244"/>
          </exon>
          <intron i_serial="8" don_prob="0.969" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76028" i_stop="76130" i_length="103"/>
          </intron>
          <exon e_serial="9" e_score="0.911">
            <gDNA_exon_boundary e_start="76131" e_stop="76490" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70777" stop="70933"/>
              <exon start="71706" stop="71951"/>
              <exon start="74207" stop="74356"/>
              <exon start="74457" stop="74590"/>
              <exon start="74656" stop="74679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70799" stop="70933"/>
              <exon start="71706" stop="71951"/>
              <exon start="74207" stop="74356"/>
              <exon start="74457" stop="74590"/>
              <exon start="74656" stop="74869"/>
              <exon start="74950" stop="75095"/>
              <exon start="75187" stop="75695"/>
              <exon start="75784" stop="76027"/>
              <exon start="76131" stop="76490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATG : ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG : GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAG : AAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG : GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGAGTAAGGCATCGCCCCTTTCAAATTATTGTAAGTAGCTCATTTATTCCTAATCTATTTAATTGCTTATTGAAACTATAGGATCCTGATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAG : AAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</gDNA_template>
            <first_frame> L  E  P  T  P  Y  I  F  L  A  C  R  K  L  N  *  Q  H  V  F  C  *  S  F  S  I  S  S  S  L  F  H  S  Q  R  F  S  *  C  C  *  *  N  E  S  S  Q  Q  T  F  V  Y   : D  G  S  L  D  *  *  I  E  P  V  A  P  A  T  S  V  L  G  A  T  L  S  R  S  T  A  T  S  S  S  A  I  *  F  D  Q  R  R  *  N  I  Y  Y  R  C  Y  I  K  S  G  R  R  K  I  Q  R  P  L  *  *  R  M  W  Q  *  I  T  F  L  W  *  E  Y  D  A  C  C  S  T  *  K   : V  K  E  S  R  S  N  G  S  G  N  K  I  A  S  T  Q  K  I  H  R  Y  W  K  T  I  Q  H  D  S  C  L  L  D  T  I  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  A  K  G  T  *  R  S  C  K  *  V  S  S  Q  V  L  E  V  F  Q  D  Q  A  N  T  Y  G  F  M  *  Y  Q  D  G  S  L  E  H  T  Y  S  T  V  :  G  W  K  C  Y  L  W  E  Q  I  *  S  F  K  E  S  E  D  I  *  R  R  K  I  E  T  I  R  K  W  A  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  C  L  G  W  T  C  N  S  A  S  A  L  C  T  R  A  *  S  C  L  *  H  L  E   : E  R  I  S  R  I  E  R  *  G  V  V  S  S  C  K  T  C  H  C  C  C  N  C  *  N  S  H  H  R  L  D  S  *  T  S  Q  Y  R  H  P  S  S  R  N  A  R  Q  L  :  V  W  I  V  R  K  E  I  Q  G  Y  I  W  S  C  W  R  F  H  F  K  W  F  C  G  N  E  E  T  *  G  S  W  S  A  L  F  L  N  *  G  I  Y  E  C  L  S  N  A  S  T  P  A  *  Y  T  *  A  K  K  Y  R  C  H  A  W  T  K  Q  I  S  S  F  D  *  *  V  R  H  R  P  F  Q  I  I  V  S  S  S  F  I  P  N  L  F  N  C  L  L  K  L  *  D  P  D  G  R  S  N  W  G  *  R  K  *  E  S  I  K  N  W  V  Y  *  A  N  G  F  N  G  T  S  S  *  W  S  S  *  T  L  E  L  S  D  M  D  E  G  S  Y  C  P  R  R  R  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  R  Q  R  K  E  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  E  *  *  Y  G  S  Y  *  N  T  *  *  S  I  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  G  V  C  Y  L  *  D  C  F  F  H  I  S  N  H  G  I  K  :  K  V  R  G  R  *  I  F  H  E  L  L  Q  *  G  D  I  Y  E  K  R  T  *  M  G  E  Y  N  *  K  L  K  R  C  T  R  S  T  L  S  R  D  D  *  E  M  D  E  L  Q  Q  R  L  F  C  L  E  L  A  S  R  T  T  Q  S  N  S  S  L  L  S  R  S  S  D  I  G  S  K  S  K  *  K  E  V  I  R  V  L  I  S  F  Y  L  Q  M  C  N  K  I  P  C  T  I  L  T  T  C  F  I  Q  *  A  V  L  *  N  Y  F  R </first_frame>
            <second_frame>  *  N  Q  P  H  I  Y  F  *  L  V  E  N  *  T  N  N  M  S  F  V  N  L  F  L  F  P  L  R  C  F  I  H  K  D  F  H  D  V  V  D  R  M  S  L  L  N  K  L  L  F  M  :  M  V  H  L  I  D  K  L  N  L  W  H  R  L  P  V  F  L  G  L  L  Y  L  A  A  R  R  H  L  H  Q  Q  Y  N  L  I  N  V  D  R  T  F  T  I  D  V  T  S  N  R  V  V  E  K  Y  N  D  P  F  N  E  G  C  G  S  E  L  P  F  F  G  R  N  M  M  P  V  V  Q  H  E  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  L  R  A  P  E  E  V  A  S  E  C  P  L  K  S  L  K  F  F  K  T  K  Q  T  P  T  G  L  C  D  I  K  T  G  H  L  N  I  R  T  P  Q  W :   D  G  S  A  I  Y  G  S  R  S  E  V  S  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  A  W  A  G  L  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  T  L  K  :  K  E  Y  P  E  L  K  D  E  E  L  Y  R  H  A  K  R  V  T  A  A  V  I  A  K  I  H  T  I  D  W  T  V  E  L  L  N  T  D  T  L  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  S  I  L  S  G  F  V  G  M  K  K  P  E  D  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  E  L  R  N  I  D  A  T  P  G  L  N  K  S  L  P  L  T  N  E  *  G  I  A  P  F  K  L  L  *  V  A  H  L  F  L  I  Y  L  I  A  Y  *  N  Y  R  I  L  M  E  D  L  I  G  G  K  G  N  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  S  D  D  M  E  V  I  K  T  L  N  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  I  M  A  S  R :   R  L  E  A  D  K  F  F  T  S  Y  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  E  K  W  M  N  S  N  S  A  F  S  V  W  N  S  P  P  E  P  H  N  P  I  P  V  Y  F  R  V  P  R  T  *  A  Q  N  Q  N  K  K  K  *  Y  V  C  *  L  V  F  T  C  K  C  V  I  R  F  H  V  L  S  S  L  P  V  S  F  S  E  P  F  Y  E  T  I  S   </second_frame>
            <third_frame>   R  T  N  P  I  Y  I  S  S  L  *  K  I  K  L  T  T  C  L  L  L  I  F  F  Y  F  L  F  V  V  S  F  T  K  I  F  M  M  L  L  I  E  *  V  F  S  T  N  F  C  L  * :   W  F  T  *  L  I  N  *  T  C  G  T  G  Y  Q  C  S  W  G  Y  F  I  S  Q  H  G  D  I  F  I  S  N  I  I  *  S  T  S  I  E  H  L  L  S  M  L  H  Q  I  G  S  S  K  N  T  T  T  P  L  M  K  D  V  A  V  N  Y  L  S  L  V  G  I  *  C  L  L  F  N  M  K  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  N  C  *  H  A  E  N  S  S  I  L  E  N  N  S  T  *  *  L  P  L  G  Y  N  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  L  K  K  L  Q  V  S  V  L  S  S  P  *  S  F  S  R  P  S  K  H  L  R  V  Y  V  I  S  R  R  V  T  *  T  Y  V  L  H  S   : G  M  E  V  L  F  M  G  A  D  L  K  F  Q  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  G  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  M  L  G  L  D  L  *  L  C  K  R  S  L  Y  K  S  I  I  L  F  V  T  P  *  R :   K  N  I  Q  N  *  K  M  R  S  C  I  V  M  Q  N  V  S  L  L  L  *  L  L  K  F  T  P  *  I  G  Q  L  N  F  S  I  Q  T  P  F  *  Q  E  C  A  P  I   : G  M  D  C  *  E  R  N  S  R  I  H  L  V  M  L  E  V  P  F  *  V  V  L  W  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  R  N  L  R  V  S  I  E  C  I  N  S  C  L  I  H  L  S  *  E  I  S  M  P  R  L  D  *  T  N  L  F  L  *  L  M  S  K  A  S  P  L  S  N  Y  C  K  *  L  I  Y  S  *  S  I  *  L  L  I  E  T  I  G  S  *  W  K  I  *  L  G  V  K  E  M  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  D  I  K  L  V  E  L  L  N  F  G  I  I  R  Y  G  *  G  I  L  L  P  K  T  S  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  E  T  E  K  G  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  V  M  I  W  K  L  L  K  H  L  M  K  Y  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  R  G  L  L  S  L  R  L  L  F  S  Y  F  *  S  W  H  Q   : E  G  *  R  Q  I  N  F  S  R  A  I  T  M  R  R  H  I  R  K  K  D  L  N  G  *  I  Q  L  K  A  *  K  M  Y  *  I  D  I  I  Q  R  *  L  R  N  G  *  T  P  T  A  P  F  L  F  G  T  R  L  Q  N  H  T  I  Q  F  Q  S  T  F  A  F  L  G  H  R  L  K  I  K  I  K  R  S  N  T  C  V  D  *  F  L  P  A  N  V  *  *  D  S  M  Y  Y  P  H  Y  L  F  H  S  V  S  R  F  M  K  L  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70820" stop="70933"/>
                    <exon start="71706" stop="71951"/>
                    <exon start="74207" stop="74356"/>
                    <exon start="74457" stop="74590"/>
                    <exon start="74656" stop="74869"/>
                    <exon start="74950" stop="75095"/>
                    <exon start="75187" stop="75418"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNMSFVNLFLFPLRCFIHKDFHDVVDRMSLLNKLLFMMVHLIDKLNLWHRLPVFLGLLYLAARRHLHQQYNLINVDRTFTIDVTSNRVVEKYNDPFNEGCGSELPFFGRNMMPVVQHEKLKNPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIELRAPEEVASECPLKSLKFFKTKQTPTGLCDIKTGHLNIRTPQWDGSAIYGSRSEVSKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNAWAGLVTLQALFVQEHNLVCDTLKKEYPELKDEELYRHAKRVTAAVIAKIHTIDWTVELLNTDTLLAGMRANWYGLLGKKFKDTFGHVGGSILSGFVGMKKPEDHGVPYSLTEEFTSVYRMHQLLPDTLELRNIDATPGLNKSLPLTNE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75485" stop="75695"/>
                    <exon start="75784" stop="76027"/>
                    <exon start="76131" stop="76359"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYRILMEDLIGGKGNENLSRIGFTKQMVSMGHQASGALELWNYPIWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVARYNEFRRRMLQIPITKWEDLSDDMEVIKTLNEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLIMASRRLEADKFFTSYYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTEKWMNSNSAFSVWNSPPEPHNPIPVYFRVPRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="79203" PGL_stop="78574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79203" e_stop="78885"/>
            <exon e_start="78795" e_stop="78574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.693" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="79203" e_stop="78885" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.693">
            <gDNA_intron_boundary i_start="78884" i_stop="78796" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78795" e_stop="78574" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79203" stop="78885"/>
              <exon start="78795" stop="78574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAG : TTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTACGCTTCCGCGATTCAATGCTAAAACGTTTTTAACAT</gDNA_template>
            <first_frame> P  N  H  H  L  L  *  K  N  *  P  I  L  H  L  K  *  N  K  H  H  I  S  L  C  F  S  L  L  L  V  V  N  V  Y  Q  M  K  M  N  F  H  N  Y  N  L  F  K  E  D  K  F  R  S  P  G  F  L  L  I  Y  S  L  F  L  T  V  I  F  S  C  Y  M  L  H  F  S  F  S  P  N  V  N  F  I  T  K  Q  D  S  A  P  P  T  K  S  S  H  V  T  N  H  S  Q  P  A   : V  H  N  N  I  T  S  D  C  D  L  L  N  G  N  W  V  L  E  E  K  G  N  Y  S  L  Y  Y  T  N  F  S  C  P  T  I  P  H  S  K  N  C  L  L  N  G  R  A  D  E  G  F  M  Q  W  R  W  K  P  E  E  C  T  L  P  R  F  N  A  K  T  F  L  T  </first_frame>
            <second_frame>  L  T  I  T  Y  S  R  K  I  N  P  F  F  T  *  S  R  T  S  T  T  F  L  S  V  S  L  F  S  L  L  L  M  Y  I  K  *  R  *  I  F  T  I  I  I  Y  L  K  R  I  S  F  V  A  Q  V  S  Y  *  S  I  H  S  F  *  P  *  F  S  A  A  T  C  F  I  F  P  S  A  Q  T  L  T  S  *  P  N  K  I  Q  L  L  L  L  N  P  H  T  L  Q  I  T  L  N  L  Q  :  F  T  T  T  L  H  P  I  V  T  C  *  M  V  I  G  F  *  R  R  R  V  I  I  L  C  I  I  Q  T  L  A  V  Q  Q  F  R  I  Q  K  T  V  C  *  T  E  G  Q  M  K  D  L  C  S  G  D  G  N  Q  K  N  V  R  F  R  D  S  M  L  K  R  F  *  H </second_frame>
            <third_frame>   *  P  S  P  T  L  E  K  L  T  H  S  S  L  K  V  E  Q  A  P  H  F  S  L  F  L  S  S  P  C  C  *  C  I  S  N  E  D  E  F  S  Q  L  *  S  I  *  R  G  *  V  S  *  P  R  F  L  I  D  L  F  T  L  S  N  R  D  F  Q  L  L  H  A  S  F  F  L  Q  P  K  R  *  L  H  N  Q  T  R  F  S  S  S  Y  *  I  L  T  R  Y  K  S  L  S  T  C  S :   S  Q  Q  H  Y  I  R  L  *  L  V  E  W  *  L  G  F  R  G  E  G  *  L  F  S  V  L  Y  K  L  *  L  S  N  N  S  A  F  K  K  L  F  V  E  R  K  G  R  *  R  I  Y  A  V  E  M  E  T  R  R  M  Y  A  S  A  I  Q  C  *  N  V  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79152" stop="78885"/>
                    <exon start="78795" stop="78575"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKHHISLCFSLLLVVNVYQMKMNFHNYNLFKEDKFRSPGFLLIYSLFLTVIFSCYMLHFSFSPNVNFITKQDSAPPTKSSHVTNHSQPAVHNNITSDCDLLNGNWVLEEKGNYSLYYTNFSCPTIPHSKNCLLNGRADEGFMQWRWKPEECTLPRFNAKTFLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="80951" PGL_stop="87724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80951" e_stop="81140"/>
            <exon e_start="81377" e_stop="81527"/>
            <exon e_start="81821" e_stop="81979"/>
            <exon e_start="83765" e_stop="83824"/>
            <exon e_start="84174" e_stop="84272"/>
            <exon e_start="85108" e_stop="85215"/>
            <exon e_start="85296" e_stop="85439"/>
            <exon e_start="86819" e_stop="86926"/>
            <exon e_start="87344" e_stop="87395"/>
            <exon e_start="87465" e_stop="87724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.518" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.273" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80951" e_stop="81140" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81377" e_stop="81527" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81821" e_stop="81979" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83765" e_stop="83824" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84174" e_stop="84272" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85108" e_stop="85215" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85296" e_stop="85439" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.518">
            <gDNA_intron_boundary i_start="85440" i_stop="86818" i_length="1379"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86819" e_stop="86926" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.842" acc_prob="0.981">
            <gDNA_intron_boundary i_start="86927" i_stop="87343" i_length="417"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="87344" e_stop="87395" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.273" acc_prob="0.969">
            <gDNA_intron_boundary i_start="87396" i_stop="87464" i_length="69"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="87465" e_stop="87724" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80951" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81066" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85215"/>
              <exon start="85296" stop="85439"/>
              <exon start="86819" stop="86926"/>
              <exon start="87344" stop="87395"/>
              <exon start="87465" stop="87724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCAGCCCAATTGATGTTTCCGGCAAAACAGCCCAAATATGCAGTTTCGGATCAAAATTAGCTGAAATATTACACGACTTCCCAAAATGAAACTTGAGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG : TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA : GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA : ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACCAGGC</gDNA_template>
            <first_frame> *  S  A  Q  L  M  F  P  A  K  Q  P  K  Y  A  V  S  D  Q  N  *  L  K  Y  Y  T  T  S  Q  N  E  T  *  E  I  S  Y  *  Q  R  Q  N  S  I  K  T  P  F  L  H  L  P  T  N  Y  T  L  H  S  P  L  P  L   : V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   L  P  T  C  S  V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  *  S  *  D  *  D  M  L  L  R  K  V  S  N  T  L  K  S  R  A  I  R  N  L  S  A  C  R :   L  K  E  S  G  N  A  R  I  R  T  W  L  S  Y  P  R  L  L  K  S  L  K  I  S  L  C  L  S  R  S  T  T  W  T  E :   N  P  T  L  K  P  M  P  R  Q  I  *  P  C  I  S  R  :  M  A  K  F  K  W  N  V  T  *  *  L  N  *  V  T  N  Y  Y  L  N  L  L  G  F  R  K  *  *  M  T  A  K  T  D  Q  F  G  Y  S  V  V  *  N  Y  T  C  N  M  *  I  Y  D  L  N  Y  V  H  V  T  *  L  C  I  W  I  E  S  S  F  C  C  N  L  I  C  N  E  N  W  L  G  Q  V  H  Q   </first_frame>
            <second_frame>  N  Q  P  N  *  C  F  R  Q  N  S  P  N  M  Q  F  R  I  K  I  S  *  N  I  T  R  L  P  K  M  K  L  E  R  S  A  T  D  K  D  K  T  P  L  K  L  P  F  F  T  F  Q  P  T  T  P  F  T  L  L  F  R  S  :  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : F  S  L  H  A  V  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R  N  L  R  T  K  I  C  S  *  E  R  F  Q  T  H  *  S  Q  G  R  F  E  T  C  L  H  A   : D  S  R  N  L  E  M  Q  E  S  E  H  G  *  A  I  Q  D  C  *  R  A  *  R  S  V  Y  V  F  P  D  Q  P  H  G  Q   : R  I  Q  H  *  S  R  C  P  G  K  F  S  R  V  S  Q  E :   W  R  N  S  S  G  M  *  H  D  N  L  I  K  S  P  T  T  T  S  T  C  W  D  L  G  N  D  E  *  P  P  R  Q  T  N  L  D  I  Q  L  S  E  T  T  L  V  T  C  R  Y  M  I  *  I  M  C  M  *  P  N  Y  V  S  G  L  K  V  A  S  A  V  T  *  F  A  M  K  I  G  W  D  K  Y  T  R  </second_frame>
            <third_frame>   I  S  P  I  D  V  S  G  K  T  A  Q  I  C  S  F  G  S  K  L  A  E  I  L  H  D  F  P  K  *  N  L  R  D  Q  L  L  T  K  T  K  L  H  *  N  S  L  S  S  P  S  N  Q  L  H  P  S  L  S  S  S  A  R :   A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  S  P  Y  M  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  R  Y  A  L  E  K  G  F  K  H  I  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  Q  F  M  S  F  Q  I  N  H  M  D  R  :  E  S  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : N  G  E  I  Q  V  E  C  D  M  I  T  *  L  S  H  Q  L  L  P  Q  L  V  G  I  *  E  M  M  N  D  R  Q  D  R  P  I  W  I  F  S  C  L  K  L  H  L  *  H  V  D  I  *  S  E  L  C  A  C  N  L  I  M  Y  L  D  *  K  *  L  L  L  *  P  N  L  Q  *  K  L  V  G  T  S  T  P  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81085" stop="81140"/>
                    <exon start="81377" stop="81527"/>
                    <exon start="81821" stop="81979"/>
                    <exon start="83765" stop="83824"/>
                    <exon start="84174" stop="84272"/>
                    <exon start="85108" stop="85215"/>
                    <exon start="85296" stop="85439"/>
                    <exon start="86819" stop="86926"/>
                    <exon start="87344" stop="87395"/>
                    <exon start="87465" stop="87502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSSPSNQLHPSLSSSARAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPSPYMQCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQANLAVYLKNGEIQVECDMIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81254" e_stop="81527"/>
            <exon e_start="83765" e_stop="83824"/>
            <exon e_start="84174" e_stop="84272"/>
            <exon e_start="85123" e_stop="85215"/>
            <exon e_start="85296" e_stop="85875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.677" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81254" e_stop="81527" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81528" i_stop="83764" i_length="2237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83765" e_stop="83824" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84174" e_stop="84272" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.677">
            <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="85123" e_stop="85215" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="85296" e_stop="85875" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81254" stop="81527"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85123" stop="85215"/>
              <exon start="85296" stop="85435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85415" stop="85875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCACCCCCCCCC</gDNA_template>
            <first_frame> I  *  *  *  Y  V  D  R  T  L  F  S  E  S  S  N  R  *  G  N  W  A  L  V  V  V  V  S  F  R  L  L  L  K  L  M  I  V  L  I  Q  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : S  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : L  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R  N  L  R  T  K  I  C  S  *  E  R  F  Q  T  H  *  S  Q  G  R  F  E  T  C  L  H  A  G  L  L  S  L  L  L  T  A  V  F  F  S  F  I  H  F  *  F  A  F  S  K  L  V  N  F  S  A  F  S  L  *  I  S  C  Q  I  C  I  S  S  V  I  Y  *  N  H  *  F  L  K  Q  L  L  K  S  L  F  N  *  V  S  E  T  Y  S  L  N  W  A  T  P  T  E  S  G  P  F  N  I  R  R  H  M  V  F  N  Q  L  V  F  G  H  V  H  P  K  L  T  R  I  *  F  C  I  I  T  *  N  Y  *  K  I  F  L  S  N  K  T  H  I  N  *  D  S  *  M  *  F  F  I  W  D  F  M  V  E  P  P  S  P  H  P  P   </first_frame>
            <second_frame>  Y  S  N  N  T  *  T  V  H  C  S  L  S  L  Q  I  V  E  E  I  G  H  L  *  L  L  F  R  F  V  F  C  *  N  L  *  L  C  *  Y  S  A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  R  Y  A  L  E  K  G  F  K  H  I  K  V  K  G  D  S  K  L  V  C  M  Q  V  F  F  L  Y  F  L  Q  L  F  F  L  V  L  F  I  F  N  L  L  L  V  N  *  S  I  F  L  L  S  H  F  K  Y  P  V  K  F  V  Y  L  Q  *  F  I  E  I  T  D  F  *  N  N  C  *  R  V  F  S  I  E  C  Q  R  H  I  H  *  T  G  L  H  Q  Q  K  V  D  R  S  I  *  G  D  T  W  F  L  T  N  *  F  L  D  M  Y  I  P  N  *  L  E  Y  D  F  A  *  S  H  K  I  I  E  K  Y  F  *  V  T  K  H  T  L  I  K  I  H  E  C  D  S  S  F  G  T  S  W  L  S  P  P  P  P  T  P  P  </second_frame>
            <third_frame>   I  V  I  I  R  R  P  Y  I  V  L  *  V  F  K  S  L  R  K  L  G  T  C  S  C  C  F  V  S  S  F  A  K  T  Y  D  C  V  D  T  V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  *  S  *  D  *  D  M  L  L  R  K  V  S  N  T  L  K  S  R  A  I  R  N  L  S  A  C  R  S  S  F  S  T  S  Y  S  C  F  F  *  F  Y  S  F  L  I  C  F  *  *  I  S  Q  F  F  C  F  L  T  L  N  I  L  S  N  L  Y  I  F  S  N  L  L  K  S  L  I  S  K  T  I  A  E  E  S  F  Q  L  S  V  R  D  I  F  I  E  L  G  Y  T  N  R  K  W  T  V  Q  Y  K  E  T  H  G  F  *  P  T  S  F  W  T  C  T  S  Q  I  N  *  N  M  I  L  H  N  H  I  K  L  L  K  N  I  F  E  *  Q  N  T  H  *  L  R  F  M  N  V  I  L  H  L  G  L  H  G  *  A  P  L  P  P  P  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81372" stop="81527"/>
                    <exon start="83765" stop="83824"/>
                    <exon start="84174" stop="84272"/>
                    <exon start="85123" stop="85215"/>
                    <exon start="85296" stop="85511"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQVFFLYFLQLFFLVLFIFNLLLVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85507" stop="85701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQFFCFLTLNILSNLYIFSNLLKSLISKTIAEESFQLSVRDIFIELGYTNRKWTVQYKETHGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="88139" PGL_stop="95314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88139" e_stop="88178"/>
            <exon e_start="88469" e_stop="88618"/>
            <exon e_start="88840" e_stop="88998"/>
            <exon e_start="90813" e_stop="90872"/>
            <exon e_start="91469" e_stop="91567"/>
            <exon e_start="92871" e_stop="92978"/>
            <exon e_start="93058" e_stop="93201"/>
            <exon e_start="94380" e_stop="94487"/>
            <exon e_start="94917" e_stop="94968"/>
            <exon e_start="95036" e_stop="95314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="0.991"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="88139" e_stop="88178" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88469" e_stop="88618" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88840" e_stop="88998" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90813" e_stop="90872" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91469" e_stop="91567" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="91568" i_stop="92870" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92871" e_stop="92978" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93058" e_stop="93201" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="93202" i_stop="94379" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="94380" e_stop="94487" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="94917" e_stop="94968" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="94969" i_stop="95035" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="0.975">
            <gDNA_exon_boundary e_start="95036" e_stop="95314" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88139" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92871" stop="92978"/>
              <exon start="93058" stop="93201"/>
              <exon start="94380" stop="94487"/>
              <exon start="94917" stop="94968"/>
              <exon start="95036" stop="95314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTG</gDNA_template>
            <first_frame> P  S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A  L   </first_frame>
            <second_frame>  Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *  H  F  </second_frame>
            <third_frame>   K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88520" stop="88618"/>
                    <exon start="88840" stop="88998"/>
                    <exon start="90813" stop="90872"/>
                    <exon start="91469" stop="91567"/>
                    <exon start="92871" stop="92978"/>
                    <exon start="93058" stop="93201"/>
                    <exon start="94380" stop="94487"/>
                    <exon start="94917" stop="94968"/>
                    <exon start="95036" stop="95076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91578" e_stop="92102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="91578" e_stop="92102" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91578" stop="92102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAA</gDNA_template>
            <first_frame> Y  F  T  *  Q  F  F  V  S  I  R  L  N  S  C  H  C  L  L  Y  L  D  V  D  I  L  G  V  G  *  G  W  *  F  G  G  W  L  A  L  E  R  A  C  S  Y  V  L  T  L  F  C  C  W  P  K  L  V  R  I  V  M  R  I  G  A  D  L  E  N  K  R  L  R  S  P  D  S  A  T  T  D  P  R  G  T  K  *  F  L  N  Q  T  V  R  A  K  W  N  I  V  G  *  R  C  A  K  V  Q  S  W  K  M  V  T  K  F  I  C  N  L  C  C  W  D  S  P  R  N  S  A  A  P  M  L  D  P  P  K  C  T  T  F  E  G  F  D  M  L  S  S  T  F  *  S  P  S  N  I  T  C  I  K  F  I  L  E  C  K  G  S  F  G  T  K </first_frame>
            <second_frame>  I  L  P  N  N  S  L  Y  Q  Y  V  *  I  L  V  I  V  C  F  I  W  M  L  T  F  L  G  W  G  E  G  G  D  L  V  G  G  *  P  W  K  G  L  A  P  M  F  *  L  Y  S  A  A  G  R  N  *  *  G  *  *  C  V  L  E  L  I  W  K  I  K  G  *  E  V  L  I  R  Q  P  L  I  Q  G  G  P  S  D  S  *  I  K  L  *  G  Q  S  G  T  L  L  V  N  V  A  Q  K  S  K  V  G  R  W  *  Q  N  L  Y  V  I  Y  V  A  G  I  L  Q  E  I  V  L  H  P  C  *  I  L  Q  N  A  L  L  L  K  D  S  T  C  S  H  Q  H  F  R  V  R  A  T  *  L  V  L  S  L  F  *  N  V  R  G  R  L  V  Q   </second_frame>
            <third_frame>   F  Y  L  T  I  L  C  I  N  T  F  K  F  L  S  L  S  A  L  S  G  C  *  H  S  W  G  G  V  R  V  V  I  W  W  V  V  S  L  G  K  G  L  L  L  C  F  D  F  I  L  L  L  A  E  T  S  E  D  S  D  A  Y  W  S  *  F  G  K  *  K  V  E  K  S  *  F  G  N  H  *  S  K  G  D  Q  V  I  L  K  S  N  C  K  G  K  V  E  H  C  W  L  T  L  R  K  S  P  K  L  E  D  G  D  K  I  Y  M  *  S  M  L  L  G  F  S  K  K  *  C  C  T  H  A  R  S  S  K  M  H  Y  F  *  R  I  R  H  A  L  I  N  I  L  E  S  E  Q  H  N  L  Y  *  V  Y  F  R  M  *  G  V  V  W  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0065M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 51008 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 2125 bytes was the average size of a spliced alignment
$ 25392 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1587 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 40 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:40:33
-->
